179 results on '"Oshlack A."'
Search Results
2. TALLSorts: a T-cell acute lymphoblastic leukemia subtype classifier using RNA-seq expression data
3. Benchmarking single-cell hashtag oligo demultiplexing methods
4. Catchii: Empowering literature review screening in healthcare
5. Variants in SART3 cause a spliceosomopathy characterised by failure of testis development and neuronal defects
6. TALLSorts: a T-cell acute lymphoblastic leukaemia subtype classifier using RNA-seq expression data
7. Unusual PDGFRB fusion reveals novel mechanism of kinase activation in Ph-like B-ALL
8. Catchii: empowering literature review screening in healthcare
9. Toblerone: detecting exon deletion events in cancer using RNA-seq
10. 3135 – DECIPHERING THE CELL-INTRINSIC MECHANISMS CONTROLLING CELL FATE AND OUTPUT OF HEMATOPOIETIC STEM AND PROGENITOR CELLS AT SINGLE CLONE RESOLUTION.
11. 2024 – UNDERSTANDING HOW THE TISSUE MICROENVIRONMENT DIRECTS CELL FATE IN HAEMATOPOIETIC STEM AND PROGENITOR CELLS
12. Benchmarking single-cell hashtag oligo demultiplexing methods
13. Toblerone: detecting exon deletion events in cancer using RNA-seq
14. Defining the Fetal Gene Program at Single-Cell Resolution in Pediatric Dilated Cardiomyopathy
15. RNA-Seq of amniotic fluid cell-free RNA: a discovery phase study of the pathophysiology of congenital cytomegalovirus infection
16. A multimodal cell atlas of the pediatric lower airway
17. propeller: testing for differences in cell type proportions in single cell data
18. Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability
19. ALLSorts: an RNA-Seq subtype classifier for B-cell acute lymphoblastic leukemia
20. Single-cell atlas of bronchoalveolar lavage from preschool cystic fibrosis reveals new cell phenotypes
21. Enhancer retargeting of CDX2 and UBTF::ATXN7L3 define a subtype of high-risk B-progenitor acute lymphoblastic leukemia
22. STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data
23. SFPQ-ABL1 and BCR-ABL1 use different signaling networks to drive B-cell acute lymphoblastic leukemia
24. Multi-omic profiling of lung inflammation in early life cystic fibrosis
25. RNAseq of amniotic fluid cell-free RNA: insights into the pathophysiology of congenital cytomegalovirus infection
26. JAFFAL: detecting fusion genes with long-read transcriptome sequencing
27. Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants
28. DNA Methylation Profiles of Purified Cell Types in Bronchoalveolar Lavage: Applications for Mixed Cell Paediatric Pulmonary Studies
29. Slinker: Visualising novel splicing events in RNA-Seq data
30. splatPop: simulating population scale single-cell RNA sequencing data
31. Diagnostic Utility of Multimodal Genomic Profiling for Molecular Classification and MRD Assessment in Adult B-Cell Acute Lymphoblastic Leukemia
32. MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data
33. ALLSorts: a RNA-Seq classifier for B-Cell Acute Lymphoblastic Leukemia
34. splatPop: simulating population scale single-cell RNA sequencing data
35. Detecting copy number alterations in RNA-Seq using SuperFreq
36. STRipy: a graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data
37. Gene set enrichment analysis for genome-wide DNA methylation data
38. JAFFAL: Detecting fusion genes with long read transcriptome sequencing
39. Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor
40. Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design
41. MLL-TFE3: a novel and aggressive KMT2A fusion identified in infant leukemia
42. Gene set enrichment analysis for genome-wide DNA methylation data
43. Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data
44. MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data
45. Detecting copy number alterations in RNA-Seq using SuperFreq
46. Accuracy of short tandem repeats genotyping tools in whole exome sequencing data
47. The application of RNA sequencing for the diagnosis and genomic classification of pediatric acute lymphoblastic leukemia
48. SuperFreq: Integrated mutation detection and clonal tracking in cancer
49. Accuracy of short tandem repeats genotyping tools in whole exome sequencing data
50. Human yolk sac-like haematopoiesis generates RUNX1- and GFI1/1B-dependent blood and SOX17-positive endothelium
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