121 results on '"Earl, Ashlee M."'
Search Results
2. SAFPred: Synteny-aware gene function prediction for bacteria using protein embeddings
3. DistinctEscherichia colitranscriptional profiles in the guts of recurrent UTI sufferers revealed by pan-genome hybrid selection
4. Global diversity of enterococci and description of 18 previously unknown species
5. Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway
6. Utility of Mycobacterium tuberculosis genome sequencing snapshots to assess transmission dynamics over time
7. Genomic epidemiology and antibiotic susceptibility profiling of uropathogenic Escherichia coli among children in the United States
8. Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis
9. Clinical and Genomic Characterization of a Cohort of Patients With Klebsiella pneumoniae Bloodstream Infection
10. Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study
11. zol & fai: large-scale targeted detection and evolutionary investigation of gene clusters
12. The carbapenem inoculum effect provides insight into the molecular mechanisms underlying carbapenem resistance inEnterobacterales
13. Global diversity of enterococci and description of 18 novel species
14. The Role of Mobile Genetic Elements in Virulence Factor Carriage from Symptomatic and Asymptomatic Cases of Escherichia coli Bacteriuria
15. Intrinsic Resistance to Colistin in the Genus Hafnia
16. Development of a prediction model for the acquisition of extended spectrum beta-lactam-resistant organisms in U.S. international travellers
17. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes
18. Strain Tracking with Uncertainty Quantification
19. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
20. Cloacaenodin, an Antimicrobial Lasso Peptide with Activity against Enterobacter
21. Within-host evolution of bacterial pathogens during persistent infection of humans
22. Benchmarking AlphaFold ‐enabled molecular docking predictions for antibiotic discovery
23. Travel-associated extensively drug-resistant typhoid fever: a case series to inform management in non-endemic regions
24. Linking community water and sanitation access to the global burden of antibiotic resistance using human gut metagenomes from 26 countries
25. Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway
26. Modulating the evolutionary trajectory of tolerance using antibiotics with different metabolic dependencies
27. Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women
28. Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children
29. Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
30. Transcriptomics Reveals How Minocycline-Colistin Synergy Overcomes Antibiotic Resistance in Multidrug-Resistant Klebsiella pneumoniae
31. StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities
32. Establishing the role of the gut microbiota in susceptibility to recurrent urinary tract infections
33. Emerging enterococcus pore-forming toxins with MHC/HLA-I as receptors
34. The interplay between community and hospital Enterococcus faecium clones within health-care settings: a genomic analysis
35. Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance
36. Mutagenesis and DNA Repair: The Consequences of Error and Mechanisms for Remaining the Same
37. Gut-bladder axis syndrome associated with recurrent UTIs in humans
38. Transcriptomics reveals how minocycline-colistin synergy overcomes antibiotic resistance in multidrug-resistant Klebsiella pneumoniae
39. Global phylogenomic analyses of Mycobacterium abscessus provide context for non cystic fibrosis infections and the evolution of antibiotic resistance
40. Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics
41. Author response: Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics
42. Clinically relevant mutations in core metabolic genes confer antibiotic resistance
43. Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections
44. StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities
45. Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics
46. Genes Contributing to the Unique Biology and Intrinsic Antibiotic Resistance of Enterococcus faecalis
47. Acquisition and Long-term Carriage of Multidrug-Resistant Organisms in US International Travelers
48. Evidence for Expanding the Role of Streptomycin in the Management of Drug-Resistant Mycobacterium tuberculosis
49. Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data
50. Colon Cancer-Associated Fusobacterium nucleatum May Originate From the Oral Cavity and Reach Colon Tumors via the Circulatory System
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