199 results on '"Dutilh, Bas E."'
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2. Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes
3. Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
4. Taxonomic resolution of different 16S rRNA variable regions varies strongly across plant-associated bacteria
5. Metagenomics in Virology
6. Virus Bioinformatics
7. Graphite: painting genomes using a colored De Bruijn graph
8. Correction to: Changes to virus taxonomy and the ICTV Statutes ratifed by the International Committee on Taxonomy of Viruses (2023)
9. Phylogeny and disease links of a widespread and ancient gut phage lineage
10. Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome
11. Author Correction: Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
12. Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities
13. Growth rate is a dominant factor predicting the rhizosphere effect
14. Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
15. Bacterial oncotraits rather than spatial organization are associated with dysplasia in ulcerative colitis
16. Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)
17. Benchmarking Bioinformatic Virus Identification Tools Using Real-World Metagenomic Data across Biomes
18. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
19. Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons
20. Four principles to establish a universal virus taxonomy
21. Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome
22. Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee
23. Guidance for creating individual and batch latinized binomial virus species names
24. Copiotrophs dominate rhizosphere microbiomes and growth rate potential is a major factor explaining the rhizosphere effect
25. A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists
26. BACTERIAL ONCOTRAITS BUT NOT BIOFILMS ARE ASSOCIATED WITH DYSPLASIA IN ULCERATIVE COLITIS
27. Phage Genome Annotation Using the RAST Pipeline
28. Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)
29. Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
30. A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater
31. On specialists and generalists: niche range strategies across the tree of life
32. Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome
33. 613: BACTERIAL ONCOTRAITS BUT NOT BIOFILMS ARE ASSOCIATED WITH DYSPLASIA IN ULCERATIVE COLITIS
34. Differentiating between viruses and virus species by writing their names correctly
35. High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems
36. Perspective on taxonomic classification of uncultivated viruses
37. Novel high-resolution targeted sequencing of the cervicovaginal microbiome
38. Colorectal Cancer-Associated Microbiota
39. A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology
40. Finding functional associations between prokaryotic virus orthologous groups: a proof of concept
41. Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota
42. Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021
43. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)
44. RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content
45. Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain
46. The human gut microbiome and health inequities
47. Optimized bacterial DNA isolation method for microbiome analysis of human tissues
48. Production of inactivated gram-positive and gram-negative species with preserved cellular morphology and integrity
49. Stability of the human gut virome and effect of gluten-free diet
50. ITN—VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics
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