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Marine net primary production (NPP) is remarkably high given the typical vertical separation of 50–150 m between the depth zones of light and nutrient sufficiency, respectively. Here we present evidence that many autotrophs bridge this gap through downward and upward migration, thereby facilitating biological nutrient pumping and high rates of oceanic NPP. Our model suggests that phytoplankton vertical migration (PVM) fuels up to 40% (>28 tg yr−1N) of new production and directly contributes 25% of total oceanic NPP (herein estimated at 56 PgC yr−1). Confidence in these estimates is supported by good reproduction of seasonal, vertical and geographic variations in NPP. In contrast to common predictions, a sensitivity study of the PVM model indicates higher NPP under global warming when enhanced stratification reduces physical nutrient transport into the surface ocean. Our findings suggest that PVM is a key mechanism driving marine biogeochemistry and therefore requires consideration in global carbon budgets.

Diatoms account for up to 40% of marine primary production1,2and require silicic acid to grow and build their opal shell3. On the physiological and ecological level, diatoms are thought to be resistant to, or even benefit from, ocean acidification4–6. Yet, global-scale responses and implications for biogeochemical cycles in the future ocean remain largely unknown. Here we conducted five in situ mesocosm experiments with natural plankton communities in different biomes and find that ocean acidification increases the elemental ratio of silicon (Si) to nitrogen (N) of sinking biogenic matter by 17 ± 6 per cent under pCO2conditions projected for the year 2100. This shift in Si:N seems to be caused by slower chemical dissolution of silica at decreasing seawater pH. We test this finding with global sediment trap data, which confirm a widespread influence of pH on Si:N in the oceanic water column. Earth system model simulations show that a future pH-driven decrease in silica dissolution of sinking material reduces the availability of silicic acid in the surface ocean, triggering a global decline of diatoms by 13–26 per cent due to ocean acidification by the year 2200. This outcome contrasts sharply with the conclusions of previous experimental studies, thereby illustrating how our current understanding of biological impacts of ocean change can be considerably altered at the global scale through unexpected feedback mechanisms in the Earth system.

Ocean acidification (OA) will affect marine biotas from the organism to the ecosystem level. Yet, the consequences for the biological carbon pump and thereby the oceanic sink for atmospheric CO2are still unclear. Here we show that OA considerably alters the C/N ratio of organic-matter export (C/Nexport), a key factor determining efficiency of the biological pump. By synthesizing sediment-trap data from in situ mesocosm studies in different marine biomes, we find distinct but highly variable impacts of OA on C/Nexport, reaching up to a 20% increase/decrease under partial pressure of CO2(pCO2) conditions projected for 2100. These changes are driven by pCO2effects on a variety of plankton taxa and corresponding shifts in food-web structure. Notably, our findings suggest a pivotal role of heterotrophic processes in controlling the response of C/Nexportto OA, thus contradicting the paradigm of primary producers as the principal driver of biogeochemical responses to ocean change.

Ocean acidification, the change in seawater carbonate chemistry due to the uptake of anthropogenic CO2, affects the physiology of marine organisms in multiple ways1. Diverse competitive and trophic interactions transform the metabolic responses to changes in community composition, seasonal succession and potentially geographical distribution of species. The health of ocean ecosystems depends on whether basic biotic functions are maintained, ecosystem engineers and keystone species are retained, and the spread of nuisance species is avoided2. Here, we show in a field experiment that the toxic microalga Vicicitus globosushas a selective advantage under ocean acidification, increasing its abundance in natural plankton communities at CO2levels higher than 600 µatm and developing blooms above 800 µatm CO2. The mass development of V. globosushas had a dramatic impact on the plankton community, preventing the development of the micro- and mesozooplankton communities, thereby disrupting trophic transfer of primary produced organic matter. This has prolonged the residence of particulate matter in the water column and caused a strong decline in export flux. Considering its wide geographical distribution and confirmed role in fish kills3, the proliferation of V. globosusunder the IPCC4CO2emission representative concentration pathway (RCP4.5 to RCP8.5) scenarios may pose an emergent threat to coastal communities, aquaculture and fisheries.