535 results on '"Morris, James A"'
Search Results
2. Pharmacophore Establishment and Optimization of Saturated 1,6-Naphthyridine-Fused Quinazolinones that Inhibit Meningoencephalitis-Causing Naegleria fowleri
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Lish, Matthew S., McKeon, Jillian E. M., Palmentiero, Caroline M., Pomeroy, Julia M., Roster, Colm P., Guzei, Ilia A., Morris, James C., and Golden, Jennifer E.
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Primary amoebic meningoencephalitis (PAM) is a human brain infection caused by Naegleria fowleriwith a 97% mortality rate. Quinazolinones resulting from a Mannich-coupled domino rearrangement were recently identified as inhibitors of the amoeba. Herein, we resolved the effective concentrations for 25 pilot compounds and then, using the Mannich protocol and a key late-stage, N-demethylation/functionalization, we synthesized 53 additional analogs to improve potency, solubility and microsomal stability. We established an antiamoebic quinazolinone pharmacophore, culminating in (±)-trans-57bwhich featured the best combination of potency, selectivity index, solubility, and microsomal stability. Enantiomeric separation afforded (4aS,13bR)-57b(BDGR-20237) with a 41-fold potency advantage over its enantiomer. ADME and mouse pharmacokinetic profiling for BDGR-20237revealed high brain penetrance but a limited half-life which did not statistically enhance the mouse survival in a pilot efficacy study. The pharmacophoric model, supported by 88 quinazolinones, several of which exhibit subnanomolar potency, will guide further scaffold optimization.
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- 2024
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3. A New Way to Input Ligatures Found in Kirishitan-ban
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Morris, James Harry
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Abstract:This annotation explores a newly developed font that allows users to input special characters (ligatures and logograms) found in texts produced by Jesuit missionaries to Japan and their followers. This new font allows users to create transcriptions that are more materially and typographically closer to the original sources, and the syntax used to input these special characters opens up the possibility for digital analysis of these transcriptions. The annotation contextualizes the discussion of the new font, it benefits, and limitations in relation to the current practices used by Japanologists to input these characters.
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- 2024
4. Metabolism of the 4‑Hydroxyphenylpyruvate Dioxygenase Inhibitor, Mesotrione, in Multiple-Herbicide-Resistant Palmer amaranth (Amaranthus palmeri).
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Concepcion, Jeanaflor Crystal T., Kaundun, Shiv S., Morris, James A., Brandenburg, Autumn N., and Riechers, Dean E.
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- 2024
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5. Synthesis and Evaluation of Benzylamine Inhibitors of Neuropathogenic Naegleria fowleri "Brain-Eating" Amoeba.
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Pomeroy, Julia M., Khalifa, Muhammad M., Milanes, Jillian E., Palmentiero, Caroline M., Morris, James C., and Golden, Jennifer E.
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- 2024
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6. Connectivity-Dependent Conductance of 2,2′-Bipyridine-Based Metal Complexes.
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Chelli, Yahia, Ferri, Nicolò, Vezzoli, Andrea, Davidson, Ross J., Morris, James, Nichols, Richard J., Higgins, Simon J., Sangtarash, Sara, Sadeghi, Hatef, Yufit, Dmitry S., and Beeby, Andrew
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- 2023
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7. Experimental Validation of an Iterative Learning-Based Flight Trajectory Optimizer for an Underwater Kite
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Reed, James, Naik, Kartik, Abney, Andrew, Herbert, Dillon, Fine, Jacob, Vadlamannati, Ashwin, Morris, James, Taylor, Trip, Muglia, Michael, Granlund, Kenneth, Bryant, Matthew, and Vermillion, Chris
- Abstract
In this work, we present an iterative learning strategy and experimental validation thereof for optimizing the flight trajectory of an underwater kite. The methodology is adapted to two different power generation configurations. The iterative learning algorithm consists of two main steps, which are executed at each iteration. In the first step, a meta-model is updated using a recursive least squares (RLS) estimate to capture an economic performance index as a function of a set of basis parameters that define the flight trajectory. The second step is an iterative learning update using information from past cycles to update basis parameters at future cycles using a gradient ascent formulation. This algorithm was experimentally validated on a scaled experimental prototype underwater kite system towed behind a test vessel in Lake Norman, North Carolina. Using our experimental system and algorithm, we were able to increase the kite’s mechanical power generation by an average of 24.4% across the tests performed.
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- 2024
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8. An Introduction to Nanomaterials for Nanopackaging
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Morris, James E.
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The multiple purposes of an electronics “package” include the provision of mechanical support to the silicon chip, for example, and protection from the environment, the delivery of power in and the facilitation of heat out, and the reliable input and output of information signals, whether electrical or optical. In the age of heterogeneous integration, this includes the internal conversion of signal modes between multiple technologies within the package, while maintaining the traditional requirement of reliable information transmission between packages, e.g., on a traditional circuit board. This article presents some selected examples of nanopackaging, i.e., the application of nanotechnologies, (nanoparticles, carbon nanotubes and graphene here,) to electronics packaging.
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- 2024
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9. BIBLIOGRAPHIES: A SELECT BIBLIOGRAPHY OF RECENT CHINESE AND JAPANESE PUBLICATIONS ON SYRIAC CHRISTIANITY: 2019/2020-2022.
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MORRIS, JAMES HARRY and ZORKINA, MARIANA
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BIBLIOGRAPHY ,CHINESE language ,JAPANESE language ,CHRISTIANITY ,BELT & Road Initiative ,SEPULCHRAL monuments - Abstract
This document is a select bibliography of recent Chinese and Japanese publications on Syriac Christianity from 2019 to 2022. It includes books and articles written in Chinese and Japanese, covering various topics related to Syriac Christianity. The bibliography is divided into two parts, one for Chinese language publications and one for Japanese language publications. The compilers searched major databases and used physical copies to select the most significant publications for inclusion. The bibliography provides English translations and transliterations of the titles, and it aims to be a valuable resource for researchers interested in Syriac Christianity. [Extracted from the article]
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- 2023
10. Analysis of a Broad Range of Carbonyl Metabolites in Exhaled Breath by UHPLC-MS.
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Xie, Zhenzhen, Morris, James D., Mattingly, Stephanie J., Sutaria, Saurin R., Huang, Jiapeng, Nantz, Michael H., and Fu, Xiao-An
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- 2023
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11. Motives of Tobacco Use Among Young Adults in the United States Air Force
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Pebley, Kinsey, Pilehvari, Asal, Krukowski, Rebecca A., Morris, James D., and Little, Melissa A.
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Purpose Research has focused on cigarette use motives and have not included military personnel. The current study assessed tobacco use motives for different products, and differences within males and females and those with different racial identities given historical disparities in tobacco use.Design A cross-sectional survey about tobacco use was administered from October 2019 to February 2022.Setting Four Technical Training bases in the US.Sample Air Force Airmen who used tobacco (N = 3243).Measures Questions were about sociodemographic characteristics, tobacco use, and the Tobacco Motives Inventory (representing affect regulation, boredom, enhancement, and social motives).Analysis Linear regressions assessed associations between overall tobacco use and motives. Stratified analyses assessed associations between tobacco use and motives among males and females, and individuals from different racial backgrounds. Logistic regressions assessed differences in motives and use of different tobacco products between “some day” and “everyday” users.Results Overall, boredom (B= .09, SE= .01) and affect regulation (B= .05, SE= .00) motives were associated with higher tobacco use. Males and females and individuals from different racial backgrounds endorsed different motives, but all endorsed boredom as a motive for higher tobacco use. Individuals who used cigarettes, e-cigarettes, or smokeless tobacco “some days” endorsed higher social motives than everyday users, but everyday users endorsed different motives across products.Conclusion There are motives differentiating between “some day” and “everyday” users of tobacco products, which may need to be differentially targeted in intervention programs. Additionally, there are some overlapping motives (affect regulation, boredom) that may be beneficial to address with all tobacco users.
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- 2023
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12. EMPTY HOMES AND DEAD GOAT BONES ON XIJI YU: Field notes of a cultural landscape and co-creating digital deep maps.
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MORRIS, JAMES X.
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DIGITAL maps ,DIGITAL mapping ,DIGITAL humanities ,CULTURAL landscapes ,DIGITAL technology ,HISTORIC sites ,ARCHIPELAGOES ,GOAT breeds - Abstract
This article documents the abandoned cultural landscape found on the islet of Xiji in the Penghu Archipelago, in the Taiwan Strait, a heritage site that has been slipping into ruins and rewilding since 1978. This article is written as a response and contribution to the dialogue begun by Cal Flyn (2021) on nature's return to abandoned spaces. In documenting the ruination of Xiji's cultural landscape, I suggest that a new motivation for exploration and documentation of abandoned environments such as Xiji and Cal Flyn's case study island of Swona lies in anticipating the needs of future researchers. The digital turn in the social sciences and humanities has produced conditions in which simple digital survey and research tools are capable of documenting, capturing and reproducing entire cultural landscapes with ease. Collaborative data collection is now a driving force behind spatial humanities, enabling the production of navigable time maps, deep maps and spatiotemporal storyboards. This article presents the cultural landscape of Xiji as it existed in 2017, relying on photographs and observations, and tracks the process of its rewilding through accounts from informants and earlier documentation. Although Xiji's material heritage continues to deteriorate, digital tools have made it possible to reproduce and reclaim it as a dynamic digital space that can be mapped across time. [ABSTRACT FROM AUTHOR]
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- 2023
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13. Analysis of a Broad Range of Carbonyl Metabolites in Exhaled Breath by UHPLC-MS
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Xie, Zhenzhen, Morris, James D., Mattingly, Stephanie J., Sutaria, Saurin R., Huang, Jiapeng, Nantz, Michael H., and Fu, Xiao-An
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Analysis of volatile organic compounds (VOCs) in exhaled breath (EB) has shown great potential for disease detection including lung cancer, infectious respiratory diseases, and chronic obstructive pulmonary disease. Although many breath sample collection and analytical methods have been developed for breath analysis, analysis of metabolic VOCs in exhaled breath is still a challenge for clinical application. Many carbonyl compounds in exhaled breath are related to the metabolic processes of diseases. This work reports a method of ultrahigh-performance liquid chromatography coupled with high-resolution mass spectrometry (UHPLC-MS) for the analysis of a broad range of carbonyl metabolites in exhaled breath. Carbonyl compounds in the exhaled breath were captured by a fabricated silicon microreactor with a micropillar array coated with 2-(aminooxy)ethyl-N,N,N-trimethylammonium (ATM) triflate. A total of six subgroups consisting of saturated aldehydes and ketones, hydroxy-aldehydes, and hydroxy-ketones, unsaturated 2-alkenals, and 4-hydroxy-2-alkenals were identified in the exhaled breath. The combination of a silicon microreactor for the selective capture of carbonyl compounds with UHPLC-MS analysis may provide a quantitative method for the analysis of carbonyls to identify disease markers in exhaled breath.
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- 2023
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14. Synthesis of Sulfur-Substituted Bicyclo[1.1.1]pentanes by Iodo-Sulfenylation of [1.1.1]Propellane.
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Livesley, Sarah, Trueman, Bethany, Robertson, Craig M., Goundry, William R. F., Morris, James A., and Aïssa, Christophe
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- 2022
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15. Stigmatizing Terminology for Outcomes and Processes (STOP) in Alcohol Research: A Meta-epidemiologic Assessment of Language Used in Clinical Trial Publications.
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Hartwell, Micah, Lin, Vanessa, Hester, Mackenzee, Sajjadi, Nicholas B., Dunn, Kelly, Morris, James, and Witkiewitz, Katie
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Introduction: Stigmatizing language used to describe patients and medical conditions is associated with poorer health outcomes. A recent investigation showed that approximately 80% of medical literature focused on alcohol use disorder (AUD) contained stigmatizing terms related to individuals; however, the quantification of stigmatizing terminology for outcomes and processes (STOP) among AUD research is unknown. Thus, our primary objective was to evaluate publications of clinical trials for their inclusion of STOP. Methods: We performed a systematic search of PubMed for AUD clinical trials between January 1, 2017 and June 30, 2021. Article screening and data extraction were performed in a masked, duplicate manner by 2 investigators. We searched the full text of included manuscripts for STOP. We reported the frequency and percentage of manuscripts with STOP and individual terms. We evaluated associations between STOP usage and several clinical trial characteristics via logistic regression. Results: Our search returned 1552 articles, which were then randomized and the first 500 were screened for inclusion. Of 147 included articles, 115 (78.2%) included STOP. The most common STOP were "drop out" (38.78%; 57/147), "relapse" (36.05%; 53/ 147), and "adherent, nonadherence" (35.37%; 52/147). No significant associations were found between STOP usage and trial characteristics. Discussion: STOP was found in a majority of AUD clinical trial publications. As AUD is highly stigmatized, steps should be taken to eliminate usage of STOP in literature pertaining to AUD treatments. Many stigmatizing terms can be replaced by person-centered, more clinically accurate terms to further combat AUD stigma. [ABSTRACT FROM AUTHOR]
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- 2022
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16. Vaping Opioids: Should We Be Worried?
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Morris, James D., Pebley, Kinsey, and Little, Melissa A.
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The use of electronic cigarettes (i.e., e-cigarettes or vapes) has increased substantially among youth and young adults. While research has examined vaping cannabis and tetrahydrocannabinol (THC), little exists related to vaping other drugs, such as opioids, despite the fact that opioids are a leading cause of drug overdoses associated deaths in the U.S. The current study aimed to review the current state of the literature related to vaping opioids given our experience of learning about a youth overdose related to vaping opioids in a public high school in the U.S. while we were engaged in conducting community-based research. Peer-reviewed research publications related to vaping opioids are minimal, although there are several newspaper articles published related to vaping opioids, with most being about youth vaping opioids in school. This is concerning given that media often misconstrue substance use, particularly related to fentanyl, and may provide inaccurate information that perpetuates stigma. Thus, it remains unclear the scope of the issue of vaping opioids. Therefore, we propose a call to action for researchers and public health officials outlining recommendations for increased surveillance, interventions to address vaping-related opioid use, and measures to curb serious adverse consequences of vaping-related opioid use to determine whether this is a rising public health concern and offer mitigation strategies.
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- 2023
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17. Distinction between Mitochondrial Antibody-Positive and -Negative Primary Biliary Cholangitis
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Matli, Venkata Vinod Kumar, Dies, David F, Pandit, Sudha, Wellman, Gregory, and Morris, James D.
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Antimitochondrial antibody-positive primary biliary cholangitis (AMA-pos PBC) is an autoimmune disorder in which monoclonal antibodies are produced against epitopes in the mitochondrial membranes of biliary epithelial cells, resulting in progressive nonsuppurative biliary cholangitis. Up to 5% of patients lack these autoantibodies, termed antimitochondrial antibody-negative (AMA-neg) PBC. Although a somewhat new variant of AMA-pos PBC, it is not an overlapping syndrome. Few studies to date have described this phenomenon. An 87-year-old woman was referred to our clinic with elevated serum alkaline phosphatase (714 U/L). She reported fatigue but no other symptoms. A physical examination revealed a benign lesion and bilateral lower extremity swelling secondary to lymphedema. The serological profile was significant for a high antinuclear antibody titer (>1:2,560) with a centromere pattern and negative for antimitochondrial antibody (AMA). The hepatitis panel was negative for viruses A, B, and C. Her serum immunoglobulin G level was 871 mg/dL (normal, <1,600 mg/dL). The rest of the serological tests, including anti-smooth muscle antibodies (ASMA) and anti-liver/kidney microsomal antibodies, were negative. Computed tomography of the abdomen and pelvis without contrast showed normal liver parenchyma and no acute intra-abdominal pathology. Histopathology indicated florid duct lesions. The background parenchyma showed no significant steatosis, and inflammatory changes were limited to the portal areas. Periodic acid-Schiff staining revealed intact hepatic parenchyma and architecture. The patient was diagnosed with AMA-neg PBC and responded well to ursodeoxycholic acid therapy. This case highlights the importance of recognizing AMA-neg PBC as a variant of AMA-pos PBC and differentiating between them. Autoimmune cholangitis is a vague and imprecise condition. All patients with AMA-negative PBC should be tested for other PBC-specific autoantibodies. Although the prognosis and bile duct damage and loss are worse in AMA-neg PBC for unknown reasons, treatment remains the same for both.
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- 2023
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18. Sensitivity Analysis of Capital Cost of European DEMO Design
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Pearce, Alexander J., Kahn, Sebastien, Morris, James, and Muldrew, Stuart I.
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Conceptual designs for a European demonstration (EU-DEMO) power plant are based on extrapolations of physics scaling laws and current understanding of engineering limits based on available technologies. It is imperative to quantify the impact of uncertainties in physics and engineering parameters on the ability to produce an economically attractive future fusion power plant that meets key design outcomes. In this work, the sensitivity of the expected capital cost of an EU-DEMO power plant has been studied using the systems code PROCESS. A systems code aims to model interactions between subsystems of a fusion power plant and provide consistent solution across a large parameter space. The PROCESS system code allows for user-defined initial conditions and constraints and then optimizes using a given figure of merit to find optimal design parameters. We present a sensitivity analysis on optimizations around the 2018 pulsed EU-DEMO baseline, and this allows for the identification of the most consequential model parameters and the magnitude of the nonlinear interactions between them. We consider the pulsed EU-DEMO baseline, and while fixing the major radius and optimizing for fusion gain
$Q$ - Published
- 2022
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19. Toward DEMO Power Plant Concept Selection Under Epistemic Uncertainty
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Miralles-Dolz, Enrique, Pearce, Alexander, Morris, James, and Patelli, Edoardo
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To make informed decisions during the concept selection activities of a nuclear fusion power plant, it is necessary to evaluate the impact of uncertainties on the feasibility and performance of each concept. A framework for uncertainty quantification and sensitivity analysis has been developed for the PROCESS systems code to allow the direct comparison of different DEMOnstration power plant (DEMO) power plant concepts. To account for epistemic uncertainty, the uncertainty quantification was based on interval analysis, where only the bounds of the interval have to be assumed for each uncertain parameter, and the uncertainty was propagated with Monte Carlo and Latin hypercube sampling. The sensitivity analysis was based on the pinching method, consisting of reducing the interval uncertainty of each input parameter to a baseline point one by one and measuring the uncertainty reduction in the output interval. Its application is shown using the European H-mode DEMO baseline as a use case. Results suggest that the thermal He-4 fraction in plasma, plasma elongation, and H-factor should be examined further to reduce risks on its feasibility.
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- 2022
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20. Stigmatizing Terminology for Outcomes and Processes (STOP) in Alcohol Research: A Meta-epidemiologic Assessment of Language Used in Clinical Trial Publications
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Hartwell, Micah, Lin, Vanessa, Hester, Mackenzee, Sajjadi, Nicholas B., Dunn, Kelly, Morris, James, and Witkiewitz, Katie
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- 2022
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21. Neolithic Explanations Revisited: Modelling the Arrival and Spread of Domesticated Cattle into Neolithic Britain.
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Cummings, Vicki and Morris, James
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NEOLITHIC Period ,CATTLE ,ANIMAL populations - Abstract
Set against the new chronological framework for the introduction and spread of the Neolithic into Britain this paper considers the logistics of introducing domestic cattle from continental Europe. Cattle were the most extensively utilised domestic animal at the start of the Neolithic and understanding the processes behind their introduction is critical for exploring early Neolithic farming systems. We begin by exploring the realities of creating a viable new animal population and then moving that population to Britain across the water from Continental Europe. Using a series of simulated models we demonstrate that only a very small number of cattle need to have been introduced into Britain in order to enable the uptake and spread of domestic cattle across the whole island. This, in turn, may effect how we consider the mechanisms involved in the adoption of the Neolithic, and can better inform our understanding of the kinds of processes involved in the transition to the Neolithic. [ABSTRACT FROM AUTHOR]
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- 2022
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22. Effective drug combinations in breast, colon and pancreatic cancer cells
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Jaaks, Patricia, Coker, Elizabeth A., Vis, Daniel J., Edwards, Olivia, Carpenter, Emma F., Leto, Simonetta M., Dwane, Lisa, Sassi, Francesco, Lightfoot, Howard, Barthorpe, Syd, van der Meer, Dieudonne, Yang, Wanjuan, Beck, Alexandra, Mironenko, Tatiana, Hall, Caitlin, Hall, James, Mali, Iman, Richardson, Laura, Tolley, Charlotte, Morris, James, Thomas, Frances, Lleshi, Ermira, Aben, Nanne, Benes, Cyril H., Bertotti, Andrea, Trusolino, Livio, Wessels, Lodewyk, and Garnett, Mathew J.
- Abstract
Combinations of anti-cancer drugs can overcome resistance and provide new treatments1,2. The number of possible drug combinations vastly exceeds what could be tested clinically. Efforts to systematically identify active combinations and the tissues and molecular contexts in which they are most effective could accelerate the development of combination treatments. Here we evaluate the potency and efficacy of 2,025 clinically relevant two-drug combinations, generating a dataset encompassing 125 molecularly characterized breast, colorectal and pancreatic cancer cell lines. We show that synergy between drugs is rare and highly context-dependent, and that combinations of targeted agents are most likely to be synergistic. We incorporate multi-omic molecular features to identify combination biomarkers and specify synergistic drug combinations and their active contexts, including in basal-like breast cancer, and microsatellite-stable or KRAS-mutant colon cancer. Our results show that irinotecan and CHEK1 inhibition have synergistic effects in microsatellite-stable or KRAS–TP53double-mutant colon cancer cells, leading to apoptosis and suppression of tumour xenograft growth. This study identifies clinically relevant effective drug combinations in distinct molecular subpopulations and is a resource to guide rational efforts to develop combinatorial drug treatments.
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- 2022
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23. Music Therapy in Autism Spectrum Disorder: a Systematic Review
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Marquez-Garcia, Amparo V., Magnuson, Justine, Morris, James, Iarocci, Grace, Doesburg, Sam, and Moreno, Sylvain
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Individuals with autism spectrum disorder (ASD) can experience difficulties functioning in society due to social communication deficits and restrictive and repetitive behaviors. Music therapy has been suggested as a potential intervention used to improve these deficits in ASD. The current systematic literature review focuses on two methods of music therapy: improvisational music therapy (IMT) and singing/listening to songs. We review the extant literature and the associated methodological limitations, and we propose a framework to assess the effectiveness of music therapy as an intervention in ASD. We suggest the creation of a standardized framework that should utilize neuroimaging tools as an objective marker of changes induced by music therapy as well as a combination of functional and behaviourial outputs, rather than assessment methods addressing a broad range of functional and behavioural outputs, rather than only the main symptoms. The methodological limitations found in the current literature prevent us from making a strong statement about the effects of music therapy in autism. We consider treatment fidelity assessments as the key to successful future attempts to truly understand music therapy effects in ASD.
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- 2022
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24. A Bibliography of Japanese Publications on Syriac Christianity: 2019-2020.
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MORRIS, JAMES HARRY
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CHRISTIANITY ,BIBLIOGRAPHY ,JAPANESE women ,JAPANESE people - Published
- 2021
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25. Cranial Suture Evaluation in Pediatric Head Trauma
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Kriss, Spencer, Morris, James, and Martich, Vesna
- Abstract
Supplemental digital content is available in the text.
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- 2022
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26. Characteristics, origin, and potential for cancer diagnostics of ultrashort plasma cell-free DNA
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Hudecova, Irena, Smith, Christopher G., Ha¨nsel-Hertsch, Robert, Chilamakuri, Chandra S., Morris, James A., Vijayaraghavan, Aadhitthya, Heider, Katrin, Chandrananda, Dineika, Cooper, Wendy N., Gale, Davina, Garcia-Corbacho, Javier, Pacey, Simon, Baird, Richard D., Rosenfeld, Nitzan, and Mouliere, Florent
- Abstract
Current evidence suggests that plasma cell-free DNA (cfDNA) is fragmented around a mode of 166 bp. Data supporting this view has been mainly acquired through the analysis of double-stranded cfDNA. The characteristics and diagnostic potential of single-stranded and damaged double-stranded cfDNA in healthy individuals and cancer patients remain unclear. Here, through a combination of high-affinity magnetic bead–based DNA extraction and single-stranded DNA sequencing library preparation (MB-ssDNA), we report the discovery of a large proportion of cfDNA fragments centered at ∼50 bp. We show that these “ultrashort” cfDNA fragments have a greater relative abundance in plasma of healthy individuals (median = 19.1% of all sequenced cfDNA fragments, n= 28) than in plasma of patients with cancer (median = 14.2%, n= 21, P< 0.0001). The ultrashort cfDNA fragments map to accessible chromatin regions of blood cells, particularly in promoter regions with the potential to adopt G-quadruplex (G4) DNA secondary structures. G4-positive promoter chromatin accessibility is significantly enriched in ultrashort plasma cfDNA fragments from healthy individuals relative to patients with cancers (P< 0.0001), in whom G4-cfDNA enrichment is inversely associated with copy number aberration-inferred tumor fractions. Our findings redraw the landscape of cfDNA fragmentation by identifying and characterizing a novel population of ultrashort plasma cfDNA fragments. Sequencing of MB-ssDNA libraries could facilitate the characterization of gene regulatory regions and DNA secondary structures via liquid biopsy. Our data underline the diagnostic potential of ultrashort cfDNA through classification for cancer patients.
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- 2022
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27. Cost analysis of laparoscopic appendectomy in a large integrated healthcare system
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Malhotra, Lavina, Pontarelli, Elizabeth M., Grinberg, Gary G., Isaacs, Richard S., Morris, James P., and Yenumula, Pandu R.
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Introduction: Healthcare expenditure is on the rise placing greater emphasis on operational excellence, cost containment, and high quality of care. Significant variation is seen in operating room (OR) costs with common surgical procedures such as laparoscopic appendectomy. Surgeons can influence cost through the selection of instrumentation for common surgical procedures such as laparoscopic appendectomy. We aimed to quantify the cost of laparoscopic appendectomy in our healthcare system and compare cost variations to operative times and outcomes. Methods and procedures: We performed a retrospective review of laparoscopic appendectomies in a large regional healthcare system during one-year period (2018). Operating room supply costs and procedure durations were obtained for each hospital. The American College of Surgeons National Surgical Quality Improvement Program (NSQIP) outcomes and demographics were compared to the costs for each hospital. Results: A total of 4757 laparoscopic appendectomies were performed at 20 hospitals (27 to 522 per hospital) by 233 surgeons. The average supply cost per case ranged from $650 to $1067. Individual surgeon cost ranged from $197 to $1181. The average operative time was 41 min (range 33 to 60 min). There was no association between lower cost and longer operative time. The patient demographics and comorbidities were similar between sites. There were no significant differences in postoperative complications between high- and low-cost centers. The items with the greatest increase in cost were single-use energy devices (SUD) and endoscopic stapler. We estimate that a saving of over $417 per case is possible by avoiding the use of energy devices and may be as high as $ 984 by adding selective use of staplers. These modifications would result in an annual savings of $1 million for our health system and more than $ 125 million nationwide. Conclusion: Performing laparoscopic appendectomy with reusable instruments and finding alternatives to expensive energy devices and staplers can significantly decrease costs and does not increase operative time or postoperative complications.
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- 2022
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28. The Utility of Pain Scale to Assess Verifiable vs Non-Verifiable Pain in United States Emergency Departments.
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Xu, K. Tom, Morris, James E., and Piel, Christopher
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- 2021
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29. Should we embrace the term ‘preaddiction’?
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Boness, Cassandra L., Kataria, Kanak, and Morris, James
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- 2024
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30. Bibliographies: A Bibliography of Japanese Publications on Syriac Christianity: 2019-2020
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Morris, James Harry
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- 2021
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31. Dual-Stage Picolinic Acid-Derived Inhibitors of Toxoplasma gondii.
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Khalifa, Muhammad M., Martorelli Di Genova, Bruno, McAlpine, Sarah G., Gallego-Lopez, Gina M., Stevenson, David M., Rozema, Soren D., Monaghan, Neil P., Morris, James C., Knoll, Laura J., and Golden, Jennifer E.
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- 2020
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32. A Select Bibliography of Chinese and Japanese Language Publications on Syriac Christianity: 2000-2019.
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MORRIS, JAMES HARRY and CHEN CHENG
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BIBLIOGRAPHY ,CHINA-Japan relations ,SCHOLARS - Published
- 2020
33. Evaluation of the Economic Burden of Psoriatic Arthritis and the Relationship Between Functional Status and Healthcare Costs.
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McHugh, Neil, Maguire, Áine, Handel, Ian, Tillett, William, Morris, James, Hawkins, Neil, Cavill, Charlotte, Korendowych, Eleanor, and Mughal, Farhan
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- 2020
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34. Repeat limited fasciectomy is a safe and effective treatment for recurrence of Dupuytren’s disease
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Ashdown, Thomas, Hayter, Edward, Morris, James A., Clough, Oliver T., Little, Maximillian, Hardman, John, and Anakwe, Raymond E.
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AimsThe results of surgery for Dupuytren’s disease can be compromised by the potential for disease recurrence and loss of function. Selecting which patients will benefit from repeat surgery, when to operate, and what procedure to undertake requires judgement and an understanding of patient expectations and functional needs. We undertook this study to investigate patient outcomes and satisfaction following repeat limited fasciectomy for recurrent Dupuytren’s disease.MethodsWe prospectively identified all patients presenting with recurrence of Dupuytren’s disease who were selected for surgical treatment with repeat limited fasciectomy surgery between January 2013 and February 2015. Patients were assessed preoperatively, and again at a minimum of five years postoperatively. We identified 43 patients who were carefully selected for repeat fasciectomy involving 54 fingers. Patients with severe or aggressive disease with extensive skin involvement were not included; in our practice, these patients are instead counselled and preferentially treated with dermofasciectomy. The primary outcome measured was change in the Michigan Hand Outcomes Questionnaire (MHQ) score. Secondary outcomes were change in finger range of motion, flexion contracture, Semmes-Weinstein monofilament (SWM) values, and overall satisfaction.ResultsThere was a significant improvement in MHQ scores, across all domains, with a mean overall score increase of 24 points (p < 0.001). The summed flexion contracture across the metacarpophalangeal joint (MCPJ) and the proximal interphalangeal joint (PIPJ) reduced from means of 72.0° (SD 15.9°) to 5.6° (SD 6.8°) (p < 0.001). A significant increase in maximal flexion was seen at the MCPJ (p < 0.001) but not the PIPJ (p = 0.550). The mean overall satisfaction score from the visual analogue scale was 8.9 (7.9 to 10.0). Complications were uncommon although five fingers showed reduced sensibility at final follow-up.ConclusionOur study shows that repeat limited fasciectomy for selected patients presenting with recurrence of Dupuytren’s disease can be an effective and safe treatment resulting in excellent patient-reported outcomes and levels of satisfaction.Cite this article: Bone Joint J2021;103-B(5):946–950.
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- 2021
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35. Long-term results of PET-guided radiation in patients with advanced-stage diffuse large B-cell lymphoma treated with R-CHOP
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Freeman, Ciara L., Savage, Kerry J., Villa, Diego R., Scott, David W., Srour, Line, Gerrie, Alina S., Brown, Maura J., Slack, Graham W., Farinha, Pedro, Skinnider, Brian, Morris, James, Bénard, François, Aquino-Parsons, Christina, Lo, Andrea, Pickles, Tom, Wilson, Don C., Tonseth, Petter, Connors, Joseph M., and Sehn, Laurie H.
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Consolidative radiation therapy (RT) for advanced-stage diffuse large B-cell lymphoma (DLBCL) remains controversial, with routine practice continuing to include RT in patients with initial bulky disease or residual masses. Positron emission tomography (PET)-computed tomography is a sensitive modality for detecting the presence of residual disease at the end of treatment (EOT). A PET-guided approach to selectively administering RT has been the policy in British Columbia since 2005. Patients with advanced-stage DLBCL diagnosed from 1 January 2005 to 1 March 2017 and treated with at least 6 cycles of R-CHOP (cyclophosphamide, doxorubicin, vincristine, and prednisolone plus rituximab), who underwent EOT PET, were included in this analysis. Those with complete metabolic response (PET-negative [PET-NEG]) were observed; those with PET-positive (PET-POS) scans were offered consolidative RT, when feasible. Of the patient records reviewed, 723 were identified, with median follow-up of 4.3 years: 517 (72%) were PET-NEG; 206 (28%) were PET-POS. Time to progression (TTP) and overall survival (OS) at 3 years were 83% vs 56% and 87% vs 64%, in patients with PET-NEG and PET-POS scans, respectively. PET-POS patients with nonprogressing disease treated with consolidative RT (109 and 206; 53%) had outcomes approaching those of PET-NEG patients, with 3-year estimates of 76% and 80% for TTP and OS. PET-NEG patients who had bulky disease (≥10 cm) at diagnosis had outcomes indistinguishable from those without bulk, despite the omission of RT. These data suggest that patients with advanced-stage DLBCL who are PET-NEG at EOT and receive no RT have excellent outcomes. 18F-fluorodeoxyglucose-PET can reliably guide selective administration of consolidative RT, even in patients with initially bulky disease.
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- 2021
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36. Long-term results of PET-guided radiation in patients with advanced-stage diffuse large B-cell lymphoma treated with R-CHOP
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Freeman, Ciara L., Savage, Kerry J., Villa, Diego R., Scott, David W., Srour, Line, Gerrie, Alina S., Brown, Maura J., Slack, Graham W., Farinha, Pedro, Skinnider, Brian, Morris, James, Bénard, François, Aquino-Parsons, Christina, Lo, Andrea, Pickles, Tom, Wilson, Don C., Tonseth, Petter, Connors, Joseph M., and Sehn, Laurie H.
- Abstract
Consolidative radiation therapy (RT) for advanced-stage diffuse large B-cell lymphoma (DLBCL) remains controversial, with routine practice continuing to include RT in patients with initial bulky disease or residual masses. Positron emission tomography (PET)-computed tomography is a sensitive modality for detecting the presence of residual disease at the end of treatment (EOT). A PET-guided approach to selectively administering RT has been the policy in British Columbia since 2005. Patients with advanced-stage DLBCL diagnosed from 1 January 2005 to 1 March 2017 and treated with at least 6 cycles of R-CHOP (cyclophosphamide, doxorubicin, vincristine, and prednisolone plus rituximab), who underwent EOT PET, were included in this analysis. Those with complete metabolic response (PET-negative [PET-NEG]) were observed; those with PET-positive (PET-POS) scans were offered consolidative RT, when feasible. Of the patient records reviewed, 723 were identified, with median follow-up of 4.3 years: 517 (72%) were PET-NEG; 206 (28%) were PET-POS. Time to progression (TTP) and overall survival (OS) at 3 years were 83% vs 56% and 87% vs 64%, in patients with PET-NEG and PET-POS scans, respectively. PET-POS patients with nonprogressing disease treated with consolidative RT (109 and 206; 53%) had outcomes approaching those of PET-NEG patients, with 3-year estimates of 76% and 80% for TTP and OS. PET-NEG patients who had bulky disease (≥10 cm) at diagnosis had outcomes indistinguishable from those without bulk, despite the omission of RT. These data suggest that patients with advanced-stage DLBCL who are PET-NEG at EOT and receive no RT have excellent outcomes. 18F-fluorodeoxyglucose-PET can reliably guide selective administration of consolidative RT, even in patients with initially bulky disease.
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- 2021
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37. The President’s Farewell [President’s Message]
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Morris, James E.
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It’s been an extraordinary two years, for everyone, and let’s hope it is never to be repeated.
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- 2021
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38. Soka Gakkai's Human Revolution: The Rise of a Mimetic Nation in Modern Japan.
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Morris, James Harry
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- 2019
39. A Microfluidic-Based Microscopy Platform for Continuous Interrogation of Trypanosoma brucei during Environmental Perturbation.
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Voyton, Charles M., Choi, Jongsu, Qiu, Yijian, Morris, Meredith T., Ackroyd, P. Christine, Morris, James C., and Christensen, Kenneth A.
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- 2019
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40. Comment on: ‘Epimax-Related Ocular Surface Toxicity (EROST): the Glasgow experience’
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Cowen, Sophie, Aslan, Joseph, Morris, James, Vasile, Claudia, and Sian, Indy
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- 2024
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41. Theoretical Prediction of Hydrogen Storage on ZnO Sheet
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Si, H., Peng, L. J., Morris, James R., and Pan, B. C.
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Using first-principles calculations, we investigate the adsorption behavior of hydrogen on the planar hexagonal ZnO sheet. Our calculations find that the planar ZnO monolayer preferably adsorbs hydrogen molecules, where a hydrogen molecule attaches to one oxygen atom with binding energy of ∼0.13 eV. This implies that the interaction between a hydrogen molecule and the ZnO sheet is stronger than that between a hydrogen molecule and graphene. We predict that each oxygen atom in a ZnO sheet can adsorb two hydrogen molecules on opposite sides of the sheet, and thus the gravimetric density for hydrogen storage on ZnO sheet is evaluated to be about 4.7 wt % at zero temperature. Furthermore, our calculations show that the gravimetric density for hydrogen storage on ZnO sheet reaches 1.5–2.1 wt % at 298 K and 5 MPa. This suggests that, despite their weight, ZnO sheets may have potential applications in hydrogen storage.
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- 2024
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42. Inundation counteracts the promoting effect of nitrogen enrichment on soil organic carbon mineralization in a tidal marsh
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Tong, Chuan, Tan, Ji, Luo, Min, Huang, Jiafang, Xiao, Shuyao, Liu, Baigui, and Morris, James T.
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•N addition enhances iron reduction, nitrate reduction and sulfate reduction.•N addition increases C mineralization rates but decreases methanogenesis rates.•Increased inundation decreases methanogenesis rates.•Inundation counteracts promoting effect of N addition on C mineralization rates.
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- 2024
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43. Metabolism of the 4-Hydroxyphenylpyruvate Dioxygenase Inhibitor, Mesotrione, in Multiple-Herbicide-Resistant Palmer amaranth (Amaranthus palmeri)
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Concepcion, Jeanaflor Crystal T., Kaundun, Shiv S., Morris, James A., Brandenburg, Autumn N., and Riechers, Dean E.
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Metabolic resistance to the maize-selective, HPPD-inhibiting herbicide, mesotrione, occurs via Phase I ring hydroxylation in resistant waterhemp and Palmer amaranth; however, mesotrione detoxification pathways post-Phase I are unknown. This research aims to (1) evaluate Palmer amaranth populations for mesotrione resistance via survivorship, foliar injury, and aboveground biomass, (2) determine mesotrione metabolism rates in Palmer amaranth populations during a time course, and (3) identify mesotrione metabolites including and beyond Phase I oxidation. The Palmer amaranth populations, SYNR1 and SYNR2, exhibited higher survival rates (100%), aboveground biomass (c.a. 50%), and lower injury (25–30%) following mesotrione treatment than other populations studied. These two populations also metabolized mesotrione 2-fold faster than sensitive populations, PPI1 and PPI2, and rapidly formed 4-OH-mesotrione. Additionally, SYNR1 and SYNR2 formed 5-OH-mesotrione, which is not produced in high abundance in waterhemp or naturally tolerant maize. Metabolite features derived from 4/5-OH-mesotrione and potential Phase II mesotrione-conjugates were detected and characterized by liquid chromatography–mass spectrometry (LCMS).
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- 2024
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44. Joystick reduction and percutaneous Kirschner wire stabilisation for dislocation of the pisiform.
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Super, Jonathan T., Morris, James A., and Anakwe, Raymond E.
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We report the case of a sportsman who fell injuring his left non-dominant wrist. He suffered an unusual injury, a fracture dislocation of the pisotriquetral joint which left him with a painful restriction of wrist movement. We describe his presentation and treatment with a novel 'joystick' technique following failed manipulation. [ABSTRACT FROM AUTHOR]
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- 2020
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45. Anti-Kirishitan Surveillance in Early Modern Japan.
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Morris, James Harry
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CHRISTIANS ,CHRISTIANITY ,TOKUGAWA Period, Japan, 1600-1868 ,INFORMERS ,TEMPLES ,HISTORY - Abstract
From 1614 to 1873 Christianity was outlawed in Japan. The Tokugawa Shogunate, which ruled Japan for most of this period, built rigorous and complicated systems of surveillance in order to monitor their population's religious habits. This paper seeks to describe the evolution of Edo period (1603-1868) anti-Christian religious surveillance. The first two sections of the paper explore the development of surveillance under the first three Tokugawa leaders. The following sections focus on the evolution of these systems (the recruitment of informants, temple registration, the composition of registries, and tests of faith) in subsequent periods and includes some short passages from previously untranslated contemporaneous documents. Finally, the paper offers some thoughts on the efficacy of anti-Christian surveillance, arguing that the toleration of the existence of hidden communities resulted from changes in Christian behaviour that made them harder to discover and a willingness on the part of the authorities to tolerate illegal activity due to economic disincentive and a reduction in the threat that Christianity posed. [ABSTRACT FROM AUTHOR]
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- 2018
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46. Some Reflections on the First Muslim Visitor to Japan.
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Morris, James Harry
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- 2018
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47. Optimise the microbial flora with milk and yoghurt to prevent disease.
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Morris, James A.
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PATHOGENIC bacteria ,PATHOGENIC microorganisms ,MILK ,YOGURT ,BACTERIAL disease prevention - Abstract
Pathogenic bacteria, which are temporary or permanent members of our microbial flora, cause or contribute to a wide range of human disease at all ages. Conditions include Alzheimer's disease, atherosclerosis, diabetes mellitus, obesity, cancer, autoimmunity and psychosis, amongst others. The mechanism of damage is inflammation which can be chronic or acute. An optimal microbial flora includes a wide range of pathogenic bacteria in low dose. This allows specific immunity to be developed and maintained with minimal inflammatory damage. Human milk has evolved to deliver an optimal microbial flora to the infant. Cow's milk has the potential, following appropriate fortification, to maintain an optimal human microbial flora throughout life. Yoghurt is a fermented milk product in which bacteria normally present in milk convert sugars to lactic acid. The acid suppresses the growth of pathogens in the oral cavity, oropharynx and oesophagus. Thus yoghurt can restore an optimal flora in these regions in the short term. Since bacteria are transported between epithelial surfaces, yoghurt will also optimise the flora elsewhere. The judicious use of milk and yogurt could prevent a high proportion of human disease. [ABSTRACT FROM AUTHOR]
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- 2018
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48. Long-Term Prostate Specific Antigen Stability and Predictive Factors of Failure after Permanent Seed Prostate Brachytherapy.
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Tetreault-Laflamme, Audrey, Crook, Juanita, Hamm, Jeremy, Pickles, Tom, Keyes, Mira, McKenzie, Michael, Pai, Howard, Bachand, Francois, and Morris, James
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PROSTATE-specific antigen ,RADIOISOTOPE brachytherapy ,PROSTATE cancer treatment ,RADIOTHERAPY ,PROSTATE cancer - Abstract
Purpose Defining biochemical failure as nadir + 2 may overestimate cure after radiotherapy. We assessed long-term prostate specific antigen stability after low dose rate prostate brachytherapy and predictors of biochemical failure when prostate specific antigen was slowly rising below the nadir + 2 ng/ml threshold. Materials and Methods A total of 2,339 patients with low or intermediate risk prostate cancer received 125 iodine brachytherapy from 1998 to 2010 with a minimum 3-year followup. In addition, 49.7% of the patients received 6 months of androgen deprivation. Clinical, dosimetric and prostate specific antigen data were retrieved from a prospective database. Biochemical results were classified as stable or rising prostate specific antigen (0.2 ng/ml or greater and increased 0.1 ng/ml or greater during the preceding 2 years), or biochemical failure (defined as nadir + 2). Multivariate analysis was done to identify predictors of failure used to create logistic regression models. Results At a median followup of 89 months (range 37 to 199) prostate specific antigen was stable (nadir 0.03 ng/ml and at 60 months 0.04 ng/ml) in 2,004 patients (86%) and rising (nadir 0.16 ng/ml and at 60 months 0.29 ng/ml) in 145 (6%) while biochemical failure (nadir 0.51 ng/ml, p <0.001) was noted in 190 (8%). When there was no prior androgen deprivation therapy, the prostate specific antigen nadir and prostate specific antigen at 60 months were the strongest predictors of failure (OR 20.6 and 18.3, respectively, each p <0.0001). The logistic regression model had 85% sensitivity and 98% specificity, and predicted failure in 8 of 82 men (9.8%). A second model was created for the group with androgen deprivation therapy and rising prostate specific antigen using the predictive factors prostate specific antigen at 60 months (OR 53.9, p <0.0001) and T stage (OR 0.25, p = 0.0008). This model predicted biochemical failure in 30 of 56 men (54%) with 85% sensitivity and 93% specificity. The 2 predictive models yield an anticipated 90% cure rate in the entire cohort. Conclusions Brachytherapy is highly curative with stable prostate specific antigen at a surgical ablation level in 86% of patients. Rising prostate specific antigen is rare at a 6% incidence and often innocuous. [ABSTRACT FROM AUTHOR]
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- 2018
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49. Regional cost analysis for laparoscopic cholecystectomy
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Pontarelli, Elizabeth, Grinberg, Gary, Isaacs, Richard, Morris, James, Ajayi, Olakunle, and Yenumula, Pandu
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Laparoscopic cholecystectomy is the most common procedure performed by general surgeons in the United States, with approximately 600,000 procedures performed annually. As the cost of care rises, there is increasing emphasis on utilization and quality. Our objective was to evaluate the cost of laparoscopic cholecystectomy in our health system and to compare the operative times and outcomes at high- and low-cost centers. We evaluated all laparoscopic cholecystectomies performed in our system over a 1-year period. The operating room supply costs and procedure durations were obtained for each of the hospitals. The American College of Surgeons National Surgical Quality Improvement Program outcomes and demographics were compared to the costs for each hospital. During the study period, 7601 laparoscopic cholecystectomies were performed at 20 hospitals (170–759/hospital) by 227 surgeons. The average cost per case ranged from $296 at the lowest cost center to $658 at the highest cost center. The average operative time varied between sites from 46 to 95 min. There was no association between cost and operative time or case volume. There was a slight trend toward increased cost with higher number of emergency procedures, but this was not well correlated (R2= 0.03). The patient demographics and comorbidities were similar between sites. There were no significant differences in postoperative complications between high- and low-cost centers. The items with the greatest increase in cost were disposable trocars, disposable hook cautery, disposable endoscissors, and disposable clip appliers. We estimate that a savings of over $300/case is possible by using reusable instruments, which would result in an annual savings of $1.3 million for our health system, and $285 million nationwide. Performing laparoscopic cholecystectomy with reusable instruments can significantly decrease costs and does not increase operative time or postoperative complications.
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- 2019
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50. MODY: one of the most easily missed causes of diabetes
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Morris, James and Morris, David
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- 2019
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