526 results on '"Kelly, Daniel P."'
Search Results
2. Rapidly Degrading Hydrogels to Support Biofabrication and 3D Bioprinting Using Cartilage Microtissues
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Kronemberger, Gabriela S., Spagnuolo, Francesca D., Karam, Aliaa S., Chattahy, Kaoutar, Storey, Kyle J., and Kelly, Daniel J.
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In recent years, there has been increased interest in the use of cellular spheroids, microtissues, and organoids as biological building blocks to engineer functional tissues and organs. Such microtissues are typically formed by the self-assembly of cellular aggregates and the subsequent deposition of a tissue-specific extracellular matrix (ECM). Biofabrication and 3D bioprinting strategies using microtissues may require the development of supporting hydrogels and bioinks to spatially localize such biological building blocks in 3D space and hence enable the engineering of geometrically defined tissues. Therefore, the aim of this work was to engineer scaled-up, geometrically defined cartilage grafts by combining multiple cartilage microtissues within a rapidly degrading oxidized alginate (OA) supporting hydrogel and maintaining these constructs in dynamic culture conditions. To this end, cartilage microtissues were first independently matured for either 2 or 4 days and then combined in the presence or absence of a supporting OA hydrogel. Over 6 weeks in static culture, constructs engineered using microtissues that were matured independently for 2 days generated higher amounts of glycosaminoglycans (GAGs) compared to those matured for 4 days. Histological analysis revealed intense staining for GAGs and negative staining for calcium deposits in constructs generated by using the supporting OA hydrogel. Less physical contraction was also observed in constructs generated in the presence of the supporting gel; however, the remnants of individual microtissues were more observable, suggesting that even the presence of a rapidly degrading hydrogel may delay the fusion and/or the remodeling of the individual microtissues. Dynamic culture conditions were found to modulate ECM synthesis following the OA hydrogel encapsulation. We also assessed the feasibility of 3D bioprinting of cartilage microtissues within OA based bioinks. It was observed that the microtissues remained viable after extrusion-based bioprinting and were able to fuse after 48 h, particularly when high microtissue densities were used, ultimately generating a cartilage tissue that was rich in GAGs and negative for calcium deposits. Therefore, this work supports the use of OA as a supporting hydrogel/bioink when using microtissues as biological building blocks in diverse biofabrication and 3D bioprinting platforms.
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- 2024
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3. The Exoplanet Climate Infrared Telescope (EXCITE): gondola pointing and stabilization qualification
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Marshall, Heather K., Spyromilio, Jason, Usuda, Tomonori, Romualdez, Javier L., Bernard, Lee, Bocchieri, Andrea, Butler, Nathaniel, Changeat, Quentin, D'Alessandro, Azzurra, Edwards, Billy, Gamaunt, Johnathan, Gong, Qian, Hartley, John, Helson, Kyle R., Jensen, Logan, Kelly, Daniel P., Klangboonkrong, Kanchita, Kleyheeg, Annalies, Leong, Ed, Lewis, Nikole, Li, Steven, Line, Michael, Maher, Stephen, McClelland, Ryan, Miko, Laddawan R., Mugnai, Lorenzo V., Nagler, Peter C., Netterfield, C. Barth, Parmentier, Vivien, Pascale, Enzo, Patience, Jennifer, Rehm, Tim, Sarkar, Subhajit, Scowen, Paul, Tucker, Gregory, Waczynski, Augustyn, and Waldmann, Ingo
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- 2024
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4. ExoSpec project: exoplanet spectroscopy technologies for the Habitable Worlds Observatory at NASA’s Goddard Space Flight Center
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Coyle, Laura E., Matsuura, Shuji, Perrin, Marshall D., McElwain, Michael W., Zimmerman, Neil T., Rauscher, Bernard, Groff, Tyler, Mandell, Avi, Alei, Eleonora, Baines, Tyler, Berrier, Joshua, Bradley, Harrison, Gong, Qian, Howe, Alex, Juanola-Parramon, Roser, Kan, Emily, Kelly, Daniel, Kofman, Vincent, Sitarski, Breann, Stark, Christopher, Subedi, Hari, Villanueva, Geronimo, and Will, Scott
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- 2024
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5. Design and testing of a low-resolution NIR spectrograph for the Exoplanet Climate Infrared Telescope
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Bryant, Julia J., Motohara, Kentaro, Vernet, Joël R. D., Bernard, Lee, Gamaunt, Johnathan, Jensen, Logan, Bocchieri, Andrea, Butler, Nat, Changeat, Quentin, D'Alessandro, Azzurra, Edwards, Billy, Earley, Conor, Gong, Qian, Hartley, John, Helson, Kyle, Kelly, Daniel P., Klangboonkrong, Kanchita, Kleyheeg, Annalies, Lewis, Nikole, Li, Steven, Line, Michael, Maher, Stephen F., McClelland, Ryan, Miko, Laddawan R., Mugnai, Lorenzo V., Nagler, Peter, Netterfield, C. Barth, Parmentier, Vivien, Pascale, Enzo, Patience, Jennifer, Rehm, Tim, Romualdez, Javier, Sarkar, Subhajit, Scowen, Paul, Tucker, Greg, Waczynski, Augustyn, and Waldmann, Ingo
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- 2024
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6. Integration and testing of a cryogenic receiver for the Exoplanet Climate Infrared Telescope (EXCITE)
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Bryant, Julia J., Motohara, Kentaro, Vernet, Joël R. D., Kleyheeg, Annalies, Bernard, Lee, Bocchieri, Andrea, Butler, Nat, Changeat, Quentin, D'Alessandro, Azzurra, Edwards, Billy, Gamaunt, John, Gong, Qian, Hartley, John, Helson, Kyle, Jensen, Logan, Kelly, Daniel P., Klangboonkrong, Kanchita, Leong, Ed, Lewis, Nikole, Li, Steven, Line, Michael, Maher, Stephen F., McClelland, Ryan, Miko, Laddawan R., Mugnai, Lorenzo, Nagler, Peter, Netterfield, Barth, Parmentier, Vivien, Pascale, Enzo, Patience, Jennifer, Rehm, Tim, Romualdez, Javier, Sarkar, Subhajit, Scowen, Paul, Tucker, Gregory S., Waczynski, Augustyn, and Waldmann, Ingo
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- 2024
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7. Local non-violent strategies amid Guatemala’s post-accord violence: understanding the potential and limitations in poor urban neighbourhoods
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Herrera Kelly, Daniel S.
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ABSTRACTThe impact residents of violence-affected communities can have on addressing insecurity is underexplored, particularly amid criminal violence. In non-conflict contexts, can non-violent actions by committed individuals transform their violent environments given criminal groups’ social control and capacity to exert violence? Investigating two urban neighbourhoods in post-accord Guatemala, the article evidences how residents engage in violence disruption, breaking generalised self-protection strategies – silence, avoidance and displacement – to proactively address local violence. In doing so, residents can attain tangible security improvements and foster cohesion, social capital and informal leadership – facilitating further collective action. The article draws on 47 interviews, triangulated with police data and documentary evidence. The article contributes novel empirical evidence on the underexplored phenomenon of non-violent engagement with criminal groups. Conceptually, the article advances the emerging concept of violence disruption as a distinct form of agency and a useful framework to neither overlook nor overstate the impact of grassroots strategies.
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- 2024
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8. Pediatric Intermediate Care Units: A Bridge Between Pediatric Ward and ICU Care
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Hillier, Debra F., Kelly, Daniel P., Smith, Alla, Stone, Susan, Eige, Rebecca, Kan, Alison, Lach, Sithya, and Russ, Christiana M.
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- 2024
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9. Evening Concert-Los Angeles Brass, featuring Jens Lindemann, Vincent DiMartino, Bria Skonberg, Rex Richardson, Steve Cunningham, and José Sibaja.
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Kelly, Daniel
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- 2024
10. A multicenter registry study on percutaneous electrical nerve field stimulation for pediatric disorders of gut–brain interaction
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Chogle, Ashish, El‐Chammas, Khalil, Santucci, Neha, Grimm, Monica, Dorfman, Lev, Graham, Kahleb, Kelly, Daniel R., Dranove, Jason E., Rosen, Rachel, Nurko, Samuel, Croffie, Joseph, Balakrishnan, Keshawadhana, Chiou, Eric H., Zhang, Liyun, Simpson, Pippa, and Karrento, Katja
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Percutaneous electrical nerve field stimulation (PENFS) has demonstrated promise in single‐center trials for pediatric abdominal pain‐related disorders of gut–brain interaction (DGBI). Our aim was to explore efficacy of PENFS as standard therapy for DGBI in a registry involving multiple pediatric gastroenterology referral centers. This was a multicenter, prospective open‐label registry of children (8–18 years) undergoing PENFS for DGBI at seven tertiary care gastroenterology clinics. DGBI subtypes were classified by Rome IV criteria. Parents and patients completed Abdominal Pain Index (API), Nausea Severity Scale (NSS), and Functional Disability Inventory (FDI) questionnaires before, during therapy and at follow‐up visits up to 1 year later. A total of 292 subjects were included. Majority (74%) were female with median (interquartile range [IQR]) age 16.3 (14.0, 17.7) years. Most (68%) met criteria for functional dyspepsia and 61% had failed ≥4 pharmacologic therapies. API, NSS, and FDI scores showed significant declines within 3 weeks of therapy, persisting long‐term in a subset. Baseline (n= 288) median (IQR) child‐reported API scores decreased from 2.68 (1.84, 3.58) to 1.99 (1.13, 3.27) at 3 weeks (p< 0.001) and 1.81 (0.85, 3.20) at 3 months (n= 75; p< 0.001). NSS scores similarly improved from baseline, persisting at three (n= 74; p< 0.001) and 6 months later (n= 55; p< 0.001). FDI scores displayed similar reductions at 3 months (n= 76; p= 0.01) but not beyond. Parent‐reported scores were consistent with child reports. This large, comprehensive, multicenter registry highlights efficacy of PENFS for gastrointestinal symptoms and functionality for pediatric DGBI. Initial single‐center data demonstrate promising efficacy of percutaneous electrical nerve field stimulation (PENFS) for abdominal pain‐related disorders of gut–brain interaction (DGBI).Presently, there are no large‐scale studies on the effects of PENFS on gastrointestinal symptoms and related functional disability. Initial single‐center data demonstrate promising efficacy of percutaneous electrical nerve field stimulation (PENFS) for abdominal pain‐related disorders of gut–brain interaction (DGBI). Presently, there are no large‐scale studies on the effects of PENFS on gastrointestinal symptoms and related functional disability. This comprehensive, multicenter registry illustrates the beneficial effects of PENFS for pain, nausea, and functional disability in nonselected children affected by DGBI. This comprehensive, multicenter registry illustrates the beneficial effects of PENFS for pain, nausea, and functional disability in nonselected children affected by DGBI.
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- 2024
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11. Antitumor Immunity Mediated by Photodynamic Therapy Using Injectable Chitosan Hydrogels for Intratumoral and Sustained Drug Delivery.
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Gierlich, Piotr, Donohoe, Claire, Behan, Kevin, Kelly, Daniel J., Senge, Mathias O., and Gomes-da-Silva, Lígia C.
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- 2024
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12. A Prospective, Multicenter, Observational Study of Surgical vs Nonsurgical Management for Pituitary Apoplexy
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Mamelak, Adam N, Little, Andrew S, Gardner, Paul A, Almeida, João Paulo, Recinos, Pablo, Soni, Pranay, Kshettry, Varun R, Jane, John A, Barkhoudarian, Garni, Kelly, Daniel F, Dodd, Robert, Mukherjee, Debraj, Gersey, Zachary C, Fukuhara, Noriaki, Nishioka, Hiroshi, Kim, Eui-Hyun, Litré, Claude-Fabien, Sina, Elliott, Mazer, Mia W, Cui, Yujie, and Bonert, Vivien
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- 2024
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13. Antitumor Immunity Mediated by Photodynamic Therapy Using Injectable Chitosan Hydrogels for Intratumoral and Sustained Drug Delivery
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Gierlich, Piotr, Donohoe, Claire, Behan, Kevin, Kelly, Daniel J., Senge, Mathias O., and Gomes-da-Silva, Lígia C.
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Photodynamic therapy (PDT) is an anticancer therapy with proven efficacy; however, its application is often limited by prolonged skin photosensitivity and solubility issues associated with the phototherapeutic agents. Injectable hydrogels which can effectively provide intratumoral delivery of photosensitizers with sustained release are attracting increased interest for photodynamic cancer therapies. However, most of the hydrogels for PDT applications are based on systems with high complexity, and often, preclinical validation is not provided. Herein, we provide a simple and reliable pH-sensitive hydrogel formulation that presents appropriate rheological properties for intratumoral injection. For this, Temoporfin(m-THPC), which is one of the most potent clinical photosensitizers, was chemically modified to introduce functional groups that act as cross-linkers in the formation of chitosan-based hydrogels. The introduction of –COOH groups resulted in a water-soluble derivative, named PS2, that was the most promising candidate. Although PS2was not internalized by the target cells, its extracellular activation caused effective damage to the cancer cells, which was likely mediated by lipid peroxidation. The injection of the hydrogel containing PS2in the tumors was monitored by high-frequency ultrasounds and in vivofluorescence imaging which confirmed the sustained release of PS2for at least 72 h. Following local administration, light exposure was conducted one (single irradiation protocol) or three (multiple irradiation protocols) times. The latter delivered the best therapeutic outcomes, which included complete tumor regression and systemic anticancer immune responses. Immunological memory was induced as ∼75% of the mice cured with our strategy rejected a second rechallenge with live cancer cells. Additionally, the failure of PDT to treat immunocompromised mice bearing tumors reinforces the relevance of the host immune system. Finally, our strategy promotes anticancer immune responses that lead to the abscopal protection against distant metastases.
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- 2024
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14. Biofabrication and biomanufacturing in Ireland and the UK
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Murphy, Jack F., Lavelle, Martha, Asciak, Lisa, Burdis, Ross, Levis, Hannah J., Ligorio, Cosimo, McGuire, Jamie, Polleres, Marlene, Smith, Poppy O., Tullie, Lucinda, Uribe-Gomez, Juan, Chen, Biqiong, Dawson, Jonathan I., Gautrot, Julien E., Hooper, Nigel M., Kelly, Daniel J., Li, Vivian S. W., Mata, Alvaro, Pandit, Abhay, Phillips, James B., Shu, Wenmiao, Stevens, Molly M., Williams, Rachel L., Armstrong, James P. K., and Huang, Yan Yan Shery
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Graphic abstract:
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- 2024
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15. A Framework for the Emotional Psychology of Group Membership
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Davis, Taylor and Kelly, Daniel
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The vast literature on negative treatment of outgroups and favoritism toward ingroups provides many local insights but is largely fragmented, lacking an overarching framework that might provide a unified overview and guide conceptual integration. As a result, it remains unclear where different local perspectives conflict, how they may reinforce one another, and where they leave gaps in our knowledge of the phenomena. Our aim is to start constructing a framework to help remedy this situation. We first identify a few key ideas for creating a theoretical roadmap for this complex territory, namely the principles of etiological functionalism and the dual inheritance theory of human evolution. We show how a “molecular” approach to emotions fits into this picture, and use it to illuminate emotions that shape intergroup relations. Finally, we weave the pieces together into the beginnings of a systematic taxonomy of the emotions involved in social interactions, both hostile and friendly. While it is but a start, we have developed the argument in a way that illustrates how the foundational principles of our proposed framework can be extended to accommodate further cases.
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- 2024
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16. Psychological impact of the Covid-19 pandemic on nurses and midwives.
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Maben, Jill, Conolly, Anna, Abrams, Ruth, Rowland, Emma, Harris, Ruth, Kelly, Daniel, and Kent, Bridie
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- 2023
17. Evening Concert-Håkan Hardenberger and Roland Pontinen.
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Kelly, Daniel
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- 2024
18. Highly Enhanced Chloride Adsorption Mediates Efficient Neutral CO2 Electroreduction over a Dual-Phase Copper Catalyst.
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Yang, Peng-Peng, Zhang, Xiao-Long, Liu, Pei, Kelly, Daniel J., Niu, Zhuang-Zhuang, Kong, Yan, Shi, Lei, Zheng, Ya-Rong, Fan, Ming-Hui, Wang, Hui-Juan, and Gao, Min-Rui
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- 2023
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19. Psychedelic-Assisted Therapy and Psychedelic Science: A Review and Perspective on Opportunities in Neurosurgery and Neuro-Oncology.
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Kelly, Daniel F., Heinzerling, Keith, Sharma, Akanksha, Gowrinathan, Shanthi, Sergi, Karina, and Mallari, Regin Jay
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- 2023
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20. Palliative care patient emergency department visits at tertiary university-based emergency department in Ireland.
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Nordt, Sean Patrick, Ryan, John M., Kelly, Daniel, Kutubi, Abdubadie, Saleh, Renad, Quinn, Caitriona, Al Kharusi, Tariq, and Tiernan, Eoin J.
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Palliative care patients often present to the emergency department (ED) for various reasons e.g., acute illness, pain, altered mental status, and complications of therapy. Many visits involve less severe etiologies e.g., dyspnea, constipation, fear as patients approach the end of life, which may be more effectively and efficiently managed outside of the ED. The objective of this study is to identify and assess the frequency of presenting complaints, primary diagnosis, triage acuity, need for admission, in an Irish setting. A single-center retrospective, observational study of palliative care patients presenting to a tertiary-care university hospital emergency department in Dublin, Ireland. Study subjects were identified using the palliative care database and cross-referencing with the ED electronic patient record system database. The primary objective to identify potential areas to minimize ED visits and improve patient care and quality of life by elucidating reasons for visits. Outcome measures include presenting complaint, primary diagnosis, triage severity score, admission, discharge, death in hospital. Statistical analysis presented as descriptive statistics. Four-hundred-ninety-nine ED visits, 245 (49%) were male, and 254 (51%) were female with a mean age of 69.3 years-of-age. Most patients, 285 (57.1%) self-referred to the emergency department, with general practitioners and skilled nursing facility referrals 72 (14.4%) and 39 (7.8%), respectively. Primary diagnoses were various cancers, chronic obstructive pulmonary disease, congestive heart failure, and dementia. Major reasons for visits were dyspnea, pain, falls, trauma, fever, and altered mental status. Two-hundred-eighty-nine patients (58%) had an emergency severity index (ESI) score of 1 or 2 demonstrating a higher level of acuity. Three-hundred-fifty-eight (71.7%) were admitted, 141 (28.3%) discharged to home, 64 (12.8%) admitted patients died during their hospital admission. Palliative care patients utilize ED services not uncommonly. Though many of these patients presented with higher acuity triage scores, 42% had lower ESI scores and may be effectively managed outside of the ED. These data suggest developing mechanisms for these patients to be urgently evaluated in their homes or facilities obviating the need for an ED evaluation. [ABSTRACT FROM AUTHOR]
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- 2023
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21. Macrophage metabolic profile is altered by hydroxyapatite particle size.
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Shanley, Lianne C., Mahon, Olwyn R., O'Rourke, Sinead A., Neto, Nuno G.B., Monaghan, Michael G., Kelly, Daniel J., and Dunne, Aisling
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MACROPHAGES ,GLYCOLYSIS ,HYDROXYAPATITE ,CELL physiology ,GLUCOSE transporters ,MACROPHAGE activation - Abstract
Since the recent observation that immune cells undergo metabolic reprogramming upon activation, there has been immense research in this area to not only understand the basis of such changes, but also to exploit metabolic rewiring for therapeutic benefit. In a resting state, macrophages preferentially utilise oxidative phosphorylation to generate energy; however, in the presence of immune cell activators, glycolytic genes are upregulated, and energy is generated through glycolysis. This facilitates the rapid production of biosynthetic intermediates and a pro-inflammatory macrophage phenotype. While this is essential to mount responses to infectious agents, more evidence is accumulating linking dysregulated metabolism to inappropriate immune responses. Given that certain biomaterials are known to promote an inflammatory macrophage phenotype, this prompted us to investigate if biomaterial particulates can impact on macrophage metabolism. Using micron and nano sized hydroxyapatite (HA), we demonstrate for the first time that these biomaterials can indeed drive changes in metabolism, and that this occurs in a size-dependent manner. We show that micronHA, but not nanoHA, particles upregulate surrogate markets of glycolysis including the glucose transporter (GLUT1), hexokinase 2 (HK2), GAPDH, and PKM2. Furthermore, we demonstrate that micronHA alters mitochondrial morphology and promotes a bioenergetic shift to favour glycolysis. Finally, we demonstrate that glycolytic gene expression is dependent on particle uptake and that targeting glycolysis attenuates the pro-inflammatory profile of micronHA-treated macrophages. These results not only further our understanding of biomaterial-based macrophage activation, but also implicate immunometabolism as a new area for consideration in intelligent biomaterial design and therapeutic targeting. Several recent studies have reported that immune cell activation occurs concurrently with metabolic reprogramming. Furthermore, metabolic reprogramming of innate immune cells plays a prominent role in determining cellular phenotype and function. In this study we demonstrate that hydroxyapatite particle size alters macrophage metabolism, in turn driving their functional phenotype. Specifically, the pro-inflammatory phenotype promoted by micron-sized HA-particles is accompanied by changes in mitochondrial dynamics and a bioenergetic shift favouring glycolysis. This effect is not seen with nano-HA particles and can be attenuated upon inhibition of glycolysis. This study therefore not only identifies immunometabolism as a useful tool for characterising the immune response to biomaterials, but also highlights immunometabolism as a targetable aspect of the host response for therapeutic benefit. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2023
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22. Bioprinting of structurally organized meniscal tissue within anisotropic melt electrowritten scaffolds.
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Barceló, Xavier, Eichholz, Kian F., Gonçalves, Inês F., Garcia, Orquidea, and Kelly, Daniel J.
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BIOPRINTING ,FUSED deposition modeling ,BIOMIMETIC materials ,TISSUE mechanics ,TISSUE scaffolds ,SILK fibroin - Abstract
The meniscus is characterised by an anisotropic collagen fibre network which is integral to its biomechanical functionality. The engineering of structurally organized meniscal grafts that mimic the anisotropy of the native tissue remains a significant challenge. In this study, inkjet bioprinting was used to deposit a cell-laden bioink into additively manufactured scaffolds of differing architectures to engineer fibrocartilage grafts with user defined collagen architectures. Polymeric scaffolds consisting of guiding fibre networks with varying aspect ratios (1:1; 1:4; 1:16) were produced using either fused deposition modelling (FDM) or melt electrowriting (MEW), resulting in scaffolds with different internal architectures and fibre diameters. Scaffold architecture was found to influence the spatial organization of the collagen network laid down by the jetted cells, with higher aspect ratios (1:4 and 1:16) supporting the formation of structurally anisotropic tissues. The MEW scaffolds supported the development of a fibrocartilaginous tissue with compressive mechanical properties similar to that of native meniscus, while the anisotropic tensile properties of these constructs could be tuned by altering the fibre network aspect ratio. This MEW framework was then used to generate scaffolds with spatially distinct fibre patterns, which in turn supported the development of heterogenous tissues consisting of isotropic and anisotropic collagen networks. Such bioprinted tissues could potentially form the basis of new treatment options for damaged and diseased meniscal tissue. This study describes a multiple tool biofabrication strategy which enables the engineering of spatially organized fibrocartilage tissues. The architecture of MEW scaffolds can be tailored to not only modulate the directionality of the collagen fibres laid down by cells, but also to tune the anisotropic tensile mechanical properties of the resulting constructs, thereby enabling the engineering of biomimetic meniscal-like tissues. Furthermore, the inherent flexibility of MEW enables the development of zonally defined and potentially patient-specific implants. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2023
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23. Chondroitinase ABC Treatment Improves the Organization and Mechanics of 3D Bioprinted Meniscal Tissue
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Barceló, Xavier, Garcia, Orquidea, and Kelly, Daniel J.
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The meniscus is a fibrocartilage tissue that is integral to the correct functioning of the knee joint. The tissue possesses a unique collagen fiber architecture that is integral to its biomechanical functionality. In particular, a network of circumferentially aligned collagen fibers function to bear the high tensile forces generated in the tissue during normal daily activities. The limited regenerative capacity of the meniscus has motivated increased interest in meniscus tissue engineering; however, the in vitrogeneration of structurally organized meniscal grafts with a collagen architecture mimetic of the native meniscus remains a significant challenge. Here we used melt electrowriting (MEW) to produce scaffolds with defined pore architectures to impose physical boundaries upon cell growth and extracellular matrix production. This enabled the bioprinting of anisotropic tissues with collagen fibers preferentially oriented parallel to the long axis of the scaffold pores. Furthermore, temporally removing glycosaminoglycans (sGAGs) during the early stages of in vitrotissue development using chondroitinase ABC (cABC) was found to positively impact collagen network maturation. Specially we found that temporal depletion of sGAGs is associated with an increase in collagen fiber diameter without any detrimental effect on the development of a meniscal tissue phenotype or subsequent extracellular matrix production. Moreover, temporal cABC treatment supported the development of engineered tissues with superior tensile mechanical properties compared to empty MEW scaffolds. These findings demonstrate the benefit of temporal enzymatic treatments when engineering structurally anisotropic tissues using emerging biofabrication technologies such as MEW and inkjet bioprinting.
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- 2023
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24. A Cultural Species and its Cognitive Phenotypes: Implications for Philosophy
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Henrich, Joseph, Blasi, Damián E., Curtin, Cameron M., Davis, Helen Elizabeth, Hong, Ze, Kelly, Daniel, and Kroupin, Ivan
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After introducing the new field of cultural evolution, we review a growing body of empirical evidence suggesting that culture shapes what people attend to, perceive and remember as well as how they think, feel and reason. Focusing on perception, spatial navigation, mentalizing, thinking styles, reasoning (epistemic norms) and language, we discuss not only important variation in these domains, but emphasize that most researchers (including philosophers) and research participants are psychologically peculiar within a global and historical context. This rising tide of evidence recommends caution in relying on one’s intuitions or even in generalizing from reliable psychological findings to the species, Homo sapiens. Our evolutionary approach suggests that humans have evolved a suite of reliably developing cognitive abilities that adapt our minds, information-processing abilities and emotions ontogenetically to the diverse culturally-constructed worlds we confront.
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- 2023
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25. 3D bioprinting of cartilaginous templates for large bone defect healing.
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Pitacco, Pierluca, Sadowska, Joanna M., O'Brien, Fergal J., and Kelly, Daniel J.
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BIOPRINTING ,ENDOCHONDRAL ossification ,BONE regeneration ,HEALING ,BONE remodeling ,BONE growth - Abstract
Damaged or diseased bone can be treated using autografts or a range of different bone grafting biomaterials, however limitations with such approaches has motivated increased interest in developmentally inspired bone tissue engineering (BTE) strategies that seek to recapitulate the process of endochondral ossification (EO) as a means of regenerating critically sized defects. The clinical translation of such strategies will require the engineering of scaled-up, geometrically defined hypertrophic cartilage grafts that can be rapidly vascularised and remodelled into bone in mechanically challenging defect environments. The goal of this study was to 3D bioprint mechanically reinforced cartilaginous templates and to assess their capacity to regenerate critically sized femoral bone defects. Human mesenchymal stem/stromal cells (hMSCs) were incorporated into fibrin based bioinks and bioprinted into polycaprolactone (PCL) frameworks to produce mechanically reinforced constructs. Chondrogenic priming of such hMSC laden constructs was required to support robust vascularisation and graft mineralisation in vivo following their subcutaneous implantation into nude mice. With a view towards maximising their potential to support endochondral bone regeneration, we next explored different in vitro culture regimes to produce chondrogenic and early hypertrophic engineered grafts. Following their implantation into femoral bone defects within transiently immunosuppressed rats, such bioprinted constructs were rapidly remodelled into bone in vivo , with early hypertrophic constructs supporting higher levels of vascularisation and bone formation compared to the chondrogenic constructs. Such early hypertrophic bioprinted constructs also supported higher levels of vascularisation and spatially distinct patterns of new formation compared to BMP-2 loaded collagen scaffolds (here used as a positive control). In conclusion, this study demonstrates that fibrin based bioinks support chondrogenesis of hMSCs in vitro , which enables the bioprinting of mechanically reinforced hypertrophic cartilaginous templates capable of supporting large bone defect regeneration. These results support the use of 3D bioprinting as a strategy to scale-up the engineering of developmentally inspired templates for BTE. Despite the promise of developmentally inspired tissue engineering strategies for bone regeneration, there are still challenges that need to be addressed to enable clinical translation. This work reports the development and assessment (in vitro and in vivo) of a 3D bioprinting strategy to engineer mechanically-reinforced cartilaginous templates for large bone defect regeneration using human MSCs. Using distinct in vitro priming protocols, it was possible to generate cartilage grafts with altered phenotypes. More hypertrophic grafts, engineered in vitro using TGF-β3 and BMP-2, supported higher levels of blood vessel infiltration and accelerated bone regeneration in vivo. This study also identifies some of the advantages and disadvantages of such endochondral bone TE strategies over the direct delivery of BMP-2 from collagen-based scaffolds. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2023
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26. Highly Enhanced Chloride Adsorption Mediates Efficient Neutral CO2Electroreduction over a Dual-Phase Copper Catalyst
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Yang, Peng-Peng, Zhang, Xiao-Long, Liu, Pei, Kelly, Daniel J., Niu, Zhuang-Zhuang, Kong, Yan, Shi, Lei, Zheng, Ya-Rong, Fan, Ming-Hui, Wang, Hui-Juan, and Gao, Min-Rui
- Abstract
Electrocatalytic carbon dioxide reduction (CO2R) in neutral electrolytes can mitigate the energy and carbon losses caused by carbonate formation but often experiences unsatisfied multicarbon selectivity and reaction rates because of the kinetic limitation to the critical carbon monoxide (CO)–CO coupling step. Here, we describe that a dual-phase copper-based catalyst with abundant Cu(I) sites at the amorphous–nanocrystalline interfaces, which is electrochemically robust in reducing environments, can enhance chloride-specific adsorption and consequently mediate local *CO coverage for improved CO–CO coupling kinetics. Using this catalyst design strategy, we demonstrate efficient multicarbon production from CO2R in a neutral potassium chloride electrolyte (pH ∼6.6) with a high Faradaic efficiency of 81% and a partial current density of 322 milliamperes per square centimeter. This catalyst is stable after 45 h of operation at current densities relevant to commercial CO2electrolysis (300 mA per square centimeter).
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- 2023
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27. Myocardial Metabolomics of Human Heart Failure With Preserved Ejection Fraction
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Hahn, Virginia S., Petucci, Christopher, Kim, Min-Soo, Bedi, Kenneth C., Wang, Hanghang, Mishra, Sumita, Koleini, Navid, Yoo, Edwin J., Margulies, Kenneth B., Arany, Zoltan, Kelly, Daniel P., Kass, David A., and Sharma, Kavita
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- 2023
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28. Psychedelic-Assisted Therapy and Psychedelic Science: A Review and Perspective on Opportunities in Neurosurgery and Neuro-Oncology
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Kelly, Daniel F., Heinzerling, Keith, Sharma, Akanksha, Gowrinathan, Shanthi, Sergi, Karina, and Mallari, Regin Jay
- Abstract
After a decades-long pause, psychedelics are again being intensely investigated for treating a wide range of neuropsychiatric ailments including depression, anxiety, addiction, post-traumatic stress disorder, anorexia, and chronic pain syndromes. The classic serotonergic psychedelics psilocybin and lysergic acid diethylamide and nonclassic psychedelics 3,4-methylenedioxymethamphetamine and ketamine are increasingly appreciated as neuroplastogens given their potential to fundamentally alter mood and behavior well beyond the time window of measurable exposure. Imaging studies with psychedelics are also helping advance our understanding of neural networks and connectomics. This resurgence in psychedelic science and psychedelic-assisted therapy has potential significance for the fields of neurosurgery and neuro-oncology and their diverse and challenging patients, many of whom continue to have mental health issues and poor quality of life despite receiving state-of-the-art care. In this study, we review recent and ongoing clinical trials, the set and settingmodel of psychedelic-assisted therapy, potential risks and adverse events, proposed mechanisms of action, and provide a perspective on how the safe and evidence-based use of psychedelics could potentially benefit many patients, including those with brain tumors, pain syndromes, ruminative disorders, stroke, SAH, TBI, and movement disorders. By leveraging psychedelics' neuroplastic potential to rehabilitate the mind and brain, novel treatments may be possible for many of these patient populations, in some instances working synergistically with current treatments and in some using subpsychedelic doses that do not require mind-altering effects for efficacy. This review aims to encourage broader multidisciplinary collaboration across the neurosciences to explore and help realize the transdiagnostic healing potential of psychedelics.
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- 2023
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29. In Vivo Dissection of Chamber-Selective Enhancers Reveals Estrogen-Related Receptor as a Regulator of Ventricular Cardiomyocyte Identity
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Cao, Yangpo, Zhang, Xiaoran, Akerberg, Brynn N., Yuan, Haiyun, Sakamoto, Tomoya, Xiao, Feng, VanDusen, Nathan J., Zhou, Pingzhu, Sweat, Mason E., Wang, Yi, Prondzynski, Maksymilian, Chen, Jian, Zhang, Yan, Wang, Peizhe, Kelly, Daniel P., and Pu, William T.
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- 2023
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30. Local depletion of proteoglycans mediates cartilage tissue repair in an ex vivo integration model.
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Merrild, Nicholas Groth, Holzmann, Viktoria, Ariosa-Morejon, Yoanna, Faull, Peter A., Coleman, Jennifer, Barrell, William B., Young, Gloria, Fischer, Roman, Kelly, Daniel J., Addison, Owen, Vincent, Tonia L., Grigoriadis, Agamemnon E., and Gentleman, Eileen
- Subjects
PROTEOGLYCANS ,ARTICULAR cartilage ,CARTILAGE ,TISSUE engineering ,TISSUES - Abstract
Successfully replacing damaged cartilage with tissue-engineered constructs requires integration with the host tissue and could benefit from leveraging the native tissue's intrinsic healing capacity; however, efforts are limited by a poor understanding of how cartilage repairs minor defects. Here, we investigated the conditions that foster natural cartilage tissue repair to identify strategies that might be exploited to enhance the integration of engineered/grafted cartilage with host tissue. We damaged porcine articular cartilage explants and using a combination of pulsed SILAC-based proteomics, ultrastructural imaging, and catabolic enzyme blocking strategies reveal that integration of damaged cartilage surfaces is not driven by neo-matrix synthesis, but rather local depletion of proteoglycans. ADAMTS4 expression and activity are upregulated in injured cartilage explants, but integration could be reduced by inhibiting metalloproteinase activity with TIMP3. These observations suggest that catabolic enzyme-mediated proteoglycan depletion likely allows existing collagen fibrils to undergo cross-linking, fibrillogenesis, or entanglement, driving integration. Catabolic enzymes are often considered pathophysiological markers of osteoarthritis. Our findings suggest that damage-induced upregulation of metalloproteinase activity may be a part of a healing response that tips towards tissue destruction under pathological conditions and in osteoarthritis, but could also be harnessed in tissue engineering strategies to mediate repair. Cartilage tissue engineering strategies require graft integration with the surrounding tissue; however, how the native tissue repairs minor injuries is poorly understood. We applied pulsed SILAC-based proteomics, ultrastructural imaging, and catabolic enzyme blocking strategies to a porcine cartilage explant model and found that integration of damaged cartilage surfaces is driven by catabolic enzyme-mediated local depletion of proteoglycans. Although catabolic enzymes have been implicated in cartilage destruction in osteoarthritis, our findings suggest that damage-induced upregulation of metalloproteinase activity may be a part of a healing response that tips towards tissue destruction under pathological conditions. They also suggest that this natural cartilage tissue repair process could be harnessed in tissue engineering strategies to enhance the integration of engineered cartilage with host tissue. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2022
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31. Ovarian cancer mutational processes drive site-specific immune evasion
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Vázquez-García, Ignacio, Uhlitz, Florian, Ceglia, Nicholas, Lim, Jamie L. P., Wu, Michelle, Mohibullah, Neeman, Niyazov, Juliana, Ruiz, Arvin Eric B., Boehm, Kevin M., Bojilova, Viktoria, Fong, Christopher J., Funnell, Tyler, Grewal, Diljot, Havasov, Eliyahu, Leung, Samantha, Pasha, Arfath, Patel, Druv M., Pourmaleki, Maryam, Rusk, Nicole, Shi, Hongyu, Vanguri, Rami, Williams, Marc J., Zhang, Allen W., Broach, Vance, Chi, Dennis S., Da Cruz Paula, Arnaud, Gardner, Ginger J., Kim, Sarah H., Lennon, Matthew, Long Roche, Kara, Sonoda, Yukio, Zivanovic, Oliver, Kundra, Ritika, Viale, Agnes, Derakhshan, Fatemeh N., Geneslaw, Luke, Issa Bhaloo, Shirin, Maroldi, Ana, Nunez, Rahelly, Pareja, Fresia, Stylianou, Anthe, Vahdatinia, Mahsa, Bykov, Yonina, Grisham, Rachel N., Liu, Ying L., Lakhman, Yulia, Nikolovski, Ines, Kelly, Daniel, Gao, Jianjiong, Schietinger, Andrea, Hollmann, Travis J., Bakhoum, Samuel F., Soslow, Robert A., Ellenson, Lora H., Abu-Rustum, Nadeem R., Aghajanian, Carol, Friedman, Claire F., McPherson, Andrew, Weigelt, Britta, Zamarin, Dmitriy, and Shah, Sohrab P.
- Abstract
High-grade serous ovarian cancer (HGSOC) is an archetypal cancer of genomic instability1–4patterned by distinct mutational processes5,6, tumour heterogeneity7–9and intraperitoneal spread7,8,10. Immunotherapies have had limited efficacy in HGSOC11–13, highlighting an unmet need to assess how mutational processes and the anatomical sites of tumour foci determine the immunological states of the tumour microenvironment. Here we carried out an integrative analysis of whole-genome sequencing, single-cell RNA sequencing, digital histopathology and multiplexed immunofluorescence of 160 tumour sites from 42 treatment-naive patients with HGSOC. Homologous recombination-deficient HRD-Dup (BRCA1mutant-like) and HRD-Del (BRCA2mutant-like) tumours harboured inflammatory signalling and ongoing immunoediting, reflected in loss of HLA diversity and tumour infiltration with highly differentiated dysfunctional CD8+T cells. By contrast, foldback-inversion-bearing tumours exhibited elevated immunosuppressive TGFβ signalling and immune exclusion, with predominantly naive/stem-like and memory T cells. Phenotypic state associations were specific to anatomical sites, highlighting compositional, topological and functional differences between adnexal tumours and distal peritoneal foci. Our findings implicate anatomical sites and mutational processes as determinants of evolutionary phenotypic divergence and immune resistance mechanisms in HGSOC. Our study provides a multi-omic cellular phenotype data substrate from which to develop and interpret future personalized immunotherapeutic approaches and early detection research.
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- 2022
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32. Laplace Transform Fitting as a Tool To Uncover Distributions of Reverse Intersystem Crossing Rates in TADF Systems.
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Kelly, Daniel, Franca, Larissa G., Stavrou, Kleitos, Danos, Andrew, and Monkman, Andrew P.
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- 2022
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33. Kaleidollage: Original Music for Trumpet Ensemble.
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Kelly, Daniel
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- 2024
34. Closing Concert-Gordon Goodwin's Big Phat Band.
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Kelly, Daniel
- Published
- 2024
35. Adrienne Doctor-Celebrating Underrepresented Populations.
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Kelly, Daniel
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- 2024
36. University Professor Spotlight Recital Gabriel DiMartino, Michael Gause, Merrie Klazek, Gail Novak, Mikio Sasaki, and Peydon Shelton.
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Kelly, Daniel
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- 2024
37. Huw Morgan Recital.
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Kelly, Daniel
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- 2024
38. Tracking single adatoms in liquid in a transmission electron microscope
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Clark, Nick, Kelly, Daniel J., Zhou, Mingwei, Zou, Yi-Chao, Myung, Chang Woo, Hopkinson, David G., Schran, Christoph, Michaelides, Angelos, Gorbachev, Roman, and Haigh, Sarah J.
- Abstract
Single atoms or ions on surfaces affect processes from nucleation1to electrochemical reactions2and heterogeneous catalysis3. Transmission electron microscopy is a leading approach for visualizing single atoms on a variety of substrates4,5. It conventionally requires high vacuum conditions, but has been developed for in situ imaging in liquid and gaseous environments6,7with a combined spatial and temporal resolution that is unmatched by any other method—notwithstanding concerns about electron-beam effects on samples. When imaging in liquid using commercial technologies, electron scattering in the windows enclosing the sample and in the liquid generally limits the achievable resolution to a few nanometres6,8,9. Graphene liquid cells, on the other hand, have enabled atomic-resolution imaging of metal nanoparticles in liquids10. Here we show that a double graphene liquid cell, consisting of a central molybdenum disulfide monolayer separated by hexagonal boron nitride spacers from the two enclosing graphene windows, makes it possible to monitor, with atomic resolution, the dynamics of platinum adatoms on the monolayer in an aqueous salt solution. By imaging more than 70,000 single adatom adsorption sites, we compare the site preference and dynamic motion of the adatoms in both a fully hydrated and a vacuum state. We find a modified adsorption site distribution and higher diffusivities for the adatoms in the liquid phase compared with those in vacuum. This approach paves the way for in situ liquid-phase imaging of chemical processes with single-atom precision.
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- 2022
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39. Impact of Exercise on Susceptibility and Severity of COVID-19 in Patients with Cancer: A Retrospective Study.
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Bliss, Joshua W., Lavery, Jessica A., Underwood, Whitney P., Chun, Su S., Fickera, Gina A., Lee, Catherine P., Corcoran, Stacie, Maloy, Molly A., Polubriaginof, Fernanda C., Kelly, Daniel W., Scott, Jessica M., Boutros, Paul C., Moskowitz, Chaya S., and Jones, Lee W.
- Abstract
Background: Modifiable lifestyle-related factors heighten the risk and severity of coronavirus disease 2019 (COVID-19) in patients with cancer. Whether exercise lowers susceptibility or severity is not known. Methods: We identified 944 cancer patients from Memorial Sloan Kettering Cancer Center (mean age: 64; 85% female; 78% White) completing an exercise survey before receiving a confirmed positive or negative SARS-CoV-2 test. Exercise was defined as reporting moderate-intensity ≥5 days per week, ≥30 minutes/session or strenuous-intensity ≥3 days per week, ≥20 minutes/session. Multivariable logistic regression was used to determine the relationship between exercise and COVID-19 susceptibility and severity (i.e., composite of hospital admission or death events) with adjustment for clinical-epidemiologic covariates. Results: Twenty-four percent (230/944) of the overall cohort were diagnosed with COVID-19 and 35% (333/944) were exercisers. During a median follow-up of 10 months, 26% (156/611) of nonexercising patients were diagnosed with COVID-19 compared with 22% (74/333) of exercising patients. The adjusted OR for risk of COVID-19 was 0.65 [95% confidence interval (CI), 0.44-0.96, P = 0.03] for exercisers compared with nonexercisers. A total of 20% (47/230) of COVID-19 positive patients were hospitalized or died. No difference in the risk of severe COVID-19 as a function of exercise status was observed (P > 0.9). Conclusions: Exercise may reduce the risk of COVID-19 infection in patients with a history of cancer, but not its severity. Impact: This study provides the first data showing that exercise might lower the risk of COVID-19 in cancer patients, but further research is required. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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40. Supraorbital and mini-pterional keyhole craniotomies for brain tumors: a clinical and anatomical comparison of indications and outcomes in 204 cases.
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Avery, Michael B., Mallari, Regin Jay, Barkhoudarian, Garni, and Kelly, Daniel F.
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- 2022
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41. Bilayered extracellular matrix derived scaffolds with anisotropic pore architecture guide tissue organization during osteochondral defect repair.
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Browe, David C., Díaz-Payno, Pedro J., Freeman, Fiona E., Schipani, Rossana, Burdis, Ross, Ahern, Daniel P., Nulty, Jessica M., Guler, Selcan, Randall, Lindsey D., Buckley, Conor T., Brama, Pieter A.J., and Kelly, Daniel J.
- Subjects
EXTRACELLULAR matrix ,ARTICULAR cartilage ,TISSUES ,STROMAL cells ,ENDOCHONDRAL ossification ,TISSUE scaffolds ,ACROMIOCLAVICULAR joint ,CELL differentiation - Abstract
While some clinical advances in cartilage repair have occurred, osteochondral (OC) defect repair remains a significant challenge, with current scaffold-based approaches failing to recapitulate the complex, hierarchical structure of native articular cartilage (AC). To address this need, we fabricated bilayered extracellular matrix (ECM)-derived scaffolds with aligned pore architectures. By modifying the freeze-drying kinetics and controlling the direction of heat transfer during freezing, it was possible to produce anisotropic scaffolds with larger pores which supported homogenous cellular infiltration and improved sulfated glycosaminoglycan deposition. Neo-tissue organization in vitro could also be controlled by altering scaffold pore architecture, with collagen fibres aligning parallel to the long-axis of the pores within scaffolds containing aligned pore networks. Furthermore, we used in vitro and in vivo assays to demonstrate that AC and bone ECM derived scaffolds could preferentially direct the differentiation of mesenchymal stromal cells (MSCs) towards either a chondrogenic or osteogenic lineage respectively, enabling the development of bilayered ECM scaffolds capable of spatially supporting unique tissue phenotypes. Finally, we implanted these scaffolds into a large animal model of OC defect repair. After 6 months in vivo , scaffold implantation was found to improve cartilage matrix deposition, with collagen fibres preferentially aligning parallel to the long axis of the scaffold pores, resulting in a repair tissue that structurally and compositionally was more hyaline-like in nature. These results demonstrate how scaffold architecture and composition can be spatially modulated to direct the regeneration of complex interfaces such as the osteochondral unit, enabling their use as cell-free, off-the-shelf implants for joint regeneration. The architecture of the extracellular matrix, while integral to tissue function, is often neglected in the design and evaluation of regenerative biomaterials. In this study we developed a bilayered scaffold for osteochondral defect repair consisting of tissue-specific extracellular matrix (ECM)-derived biomaterials to spatially direct stem/progenitor cell differentiation, with a tailored pore microarchitecture to promote the development of a repair tissue that recapitulates the hierarchical structure of native AC. The use of this bilayered scaffold resulted in improved tissue repair outcomes in a large animal model, specifically the ability to guide neo-tissue organization and therefore recapitulate key aspects of the zonal structure of native articular cartilage. These bilayer scaffolds have the potential to become a new therapeutic option for osteochondral defect repair. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
42. The EXoplanet Climate Infrared TElescope (EXCITE)
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Evans, Christopher J., Bryant, Julia J., Motohara, Kentaro, Nagler, Peter C., Bernard, Lee, Bocchieri, Andrea, Butler, Nat, Changeat, Quentin, D'Alessandro, Azzurra, Edwards, Billy, Gamaunt, John, Gong, Qian, Hartley, John, Helson, Kyle, Jensen, Logan, Kelly, Daniel P., Klangboonkrong, Kanchita, Kleyheeg, Annalies, Lewis, Nikole K., Li, Steven, Line, Michael, Maher, Stephen F., McClelland, Ryan, Miko, Laddawan R., Mugnai, Lorenzo V., Netterfield, C. Barth, Parmentier, Vivien, Pascale, Enzo, Patience, Jennifer, Rehm, Tim, Romualdez, Javier, Sarkar, Subhajit, Scowen, Paul A., Tucker, Gregory S., Waczynski, Augustyn, and Waldmann, Ingo
- Published
- 2022
- Full Text
- View/download PDF
43. The design and development status of the cryogenic receiver for the EXoplanet Climate Infrared TELescope (EXCITE)
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Evans, Christopher J., Bryant, Julia J., Motohara, Kentaro, Rehm, Tim, Bernard, Lee, Bocchieri, Andrea, Butler, Nat, Changeat, Quentin, D'Alessandro, Azzurra, Edwards, Billy, Gamaunt, John, Gong, Qian, Hartley, John, Helson, Kyle, Jensen, Logan, Kelly, Daniel P., Klangboonkrong, Kanchita, Kleyheeg, Annalies, Lewis, Nikole, Li, Steven, Line, Michael, Maher, Stephen F., McClelland, Ryan, Miko, Laddawan R., Mugnai, Lorenzo, Nagler, Peter, Netterfield, C. Barth, Parmentier, Vivien, Pascale, Enzo, Patience, Jennifer, Romualdez, Javier, Sarkar, Subhajit, Scowen, Paul A., Tucker, Gregory S., Waczynski, Augustyn, and Waldmann, Ingo
- Published
- 2022
- Full Text
- View/download PDF
44. Activated Clotting Times Demonstrate Weak Correlation With Heparin Dosing in Adult Extracorporeal Membrane Oxygenation
- Author
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Hohlfelder, Benjamin, Kelly, Daniel, Hoang, Minh, Anger, Kevin E., Sylvester, Katelyn W., Kaufman, Richard M., and Connors, Jean M.
- Published
- 2022
- Full Text
- View/download PDF
45. Functional landscapes of POLEand POLD1mutations in checkpoint blockade-dependent antitumor immunity
- Author
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Ma, Xiaoxiao, Riaz, Nadeem, Samstein, Robert M., Lee, Mark, Makarov, Vladimir, Valero, Cristina, Chowell, Diego, Kuo, Fengshen, Hoen, Douglas, Fitzgerald, Conall W. R., Jiang, Hui, Alektiar, Jonathan, Alban, Tyler J., Juric, Ivan, Parthasarathy, Prerana Bangalore, Zhao, Yu, Sabio, Erich Y., Verma, Richa, Srivastava, Raghvendra M., Vuong, Lynda, Yang, Wei, Zhang, Xiao, Wang, Jingming, Chu, Lawrence K., Wang, Stephen L., Kelly, Daniel W., Pei, Xin, Chen, Jiapeng, Yaeger, Rona, Zamarin, Dmitriy, Zehir, Ahmet, Gönen, Mithat, Morris, Luc G. T., and Chan, Timothy A.
- Abstract
Defects in pathways governing genomic fidelity have been linked to improved response to immune checkpoint blockade therapy (ICB). Pathogenic POLE/POLD1mutations can cause hypermutation, yet how diverse mutations in POLE/POLD1influence antitumor immunity following ICB is unclear. Here, we comprehensively determined the effect of POLE/POLD1mutations in ICB and elucidated the mechanistic impact of these mutations on tumor immunity. Murine syngeneic tumors harboring Pole/Pold1functional mutations displayed enhanced antitumor immunity and were sensitive to ICB. Patients with POLE/POLD1mutated tumors harboring telltale mutational signatures respond better to ICB than patients harboring wild-type or signature-negative tumors. A mutant POLE/D1function-associated signature-based model outperformed several traditional approaches for identifying POLE/POLD1mutated patients that benefit from ICB. Strikingly, the spectrum of mutational signatures correlates with the biochemical features of neoantigens. Alterations that cause POLE/POLD1function-associated signatures generate T cell receptor (TCR)-contact residues with increased hydrophobicity, potentially facilitating T cell recognition. Altogether, the functional landscapes of POLE/POLD1mutations shape immunotherapy efficacy.
- Published
- 2022
- Full Text
- View/download PDF
46. Cell-free plasma microRNAs that identify patients with glioblastoma
- Author
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Bustos, Matias A., Rahimzadeh, Negin, Ryu, Suyeon, Gross, Rebecca, Tran, Linh T., Renteria-Lopez, Victor M., Ramos, Romela I., Eisenberg, Amy, Hothi, Parvinder, Kesari, Santosh, Barkhoudarian, Garni, Takasumi, Yuki, Cobbs, Charles, Kelly, Daniel F., and Hoon, Dave S.B.
- Abstract
Glioblastoma (GBM) is still one of the most commonly diagnosed advanced stage primary brain tumors. Current treatments for patients with primary GBM (pGBM) are often not effective and a significant proportion of the patients with pGBM recur. The effective treatment options for recurrent GBM (rGBM) are limited and survival outcomes are poor. This retrospective multicenter pilot study aims to determine potential cell-free microRNAs (cfmiRs) that identify patients with pGBM and rGBM tumors. 2,083 miRs were assessed using the HTG miRNA whole transcriptome assay (WTA). CfmiRs detection was compared in pre-operative plasma samples from patients with pGBM (n= 32) and rGBM (n= 13) to control plasma samples from normal healthy donors (n= 73). 265 cfmiRs were found differentially expressed in plasma samples from pGBM patients compared to normal healthy donors (FDR < 0.05). Of those 193 miRs were also detected in pGBM tumor tissues (n= 15). Additionally, we found 179 cfmiRs differentially expressed in rGBM, of which 68 cfmiRs were commonly differentially expressed in pGBM. Using Random Forest algorithm, specific cfmiR classifiers were found in the plasma of pGBM, rGBM, and both pGBM and rGBM combined. Two common cfmiR classifiers, miR-3180-3p and miR-5739, were found in all the comparisons. In receiving operating characteristic (ROC) curves analysis for rGBM miR-3180-3p showed a specificity of 87.7% and a sensitivity of 100% (AUC = 98.5%); while miR-5739 had a specificity of 79.5% and sensitivity of 92.3% (AUC = 90.2%). This study demonstrated that plasma samples from pGBM and rGBM patients have specific miR signatures. CfmiR-3180-3p and cfmiR-5739 have potential utility in diagnosing patients with pGBM and rGBM tumors using a minimally invasive blood assay.
- Published
- 2022
- Full Text
- View/download PDF
47. Cell-free plasma microRNAs that identify patients with glioblastoma
- Author
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Bustos, Matias A., Rahimzadeh, Negin, Ryu, Suyeon, Gross, Rebecca, Tran, Linh T., Renteria-Lopez, Victor M., Ramos, Romela I., Eisenberg, Amy, Hothi, Parvinder, Kesari, Santosh, Barkhoudarian, Garni, Takasumi, Yuki, Cobbs, Charles, Kelly, Daniel F., and Hoon, Dave S. B.
- Abstract
Glioblastoma (GBM) is still one of the most commonly diagnosed advanced stage primary brain tumors. Current treatments for patients with primary GBM (pGBM) are often not effective and a significant proportion of the patients with pGBM recur. The effective treatment options for recurrent GBM (rGBM) are limited and survival outcomes are poor. This retrospective multicenter pilot study aims to determine potential cell-free microRNAs (cfmiRs) that identify patients with pGBM and rGBM tumors. 2,083 miRs were assessed using the HTG miRNA whole transcriptome assay (WTA). CfmiRs detection was compared in pre-operative plasma samples from patients with pGBM (n= 32) and rGBM (n= 13) to control plasma samples from normal healthy donors (n= 73). 265 cfmiRs were found differentially expressed in plasma samples from pGBM patients compared to normal healthy donors (FDR < 0.05). Of those 193 miRs were also detected in pGBM tumor tissues (n= 15). Additionally, we found 179 cfmiRs differentially expressed in rGBM, of which 68 cfmiRs were commonly differentially expressed in pGBM. Using Random Forest algorithm, specific cfmiR classifiers were found in the plasma of pGBM, rGBM, and both pGBM and rGBM combined. Two common cfmiR classifiers, miR-3180-3p and miR-5739, were found in all the comparisons. In receiving operating characteristic (ROC) curves analysis for rGBM miR-3180-3p showed a specificity of 87.7% and a sensitivity of 100% (AUC = 98.5%); while miR-5739 had a specificity of 79.5% and sensitivity of 92.3% (AUC = 90.2%). This study demonstrated that plasma samples from pGBM and rGBM patients have specific miR signatures. CfmiR-3180-3p and cfmiR-5739 have potential utility in diagnosing patients with pGBM and rGBM tumors using a minimally invasive blood assay.
- Published
- 2022
- Full Text
- View/download PDF
48. Harnessing the innate and adaptive immune system for tissue repair and regeneration: Considering more than macrophages.
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Shanley, Lianne C., Mahon, Olwyn R., Kelly, Daniel J., and Dunne, Aisling
- Subjects
IMMUNE system ,INNATE lymphoid cells ,DRUG target ,SPATIOTEMPORAL processes ,MUSCULOSKELETAL system diseases ,REGENERATION (Biology) ,PSYCHONEUROIMMUNOLOGY ,T cells - Abstract
Tissue healing and regeneration is a complex, choreographed, spatiotemporal process involving a plethora of cell types, the activity of which is stringently regulated in order for effective tissue repair to ensue post injury. A number of globally prevalent conditions such as heart disease, organ failure, and severe musculoskeletal disorders require new therapeutic strategies to repair damaged or diseased tissue, particularly given an ageing population in which obesity, diabetes, and consequent tissue defects have reached epidemic proportions. This is further compounded by the lack of intrinsic healing and poor regenerative capacity of certain adult tissues. While vast progress has been made in the last decade regarding tissue regenerative strategies to direct self-healing, for example, through implantation of tissue engineered scaffolds, several challenges have hampered the clinical application of these technologies. Control of the immune response is growing as an attractive approach in regenerative medicine and it is becoming increasingly apparent that an in depth understanding of the interplay between cells of the immune system and tissue specific progenitor cells is of paramount importance. Furthermore, the integration of immunology and bioengineering promises to elevate the efficacy of biomaterial-based tissue repair and regeneration. In this review, we highlight the role played by individual immune cell subsets in tissue repair processes and describe new approaches that are being taken to direct appropriate healing outcomes via biomaterial mediated targeting of immune cell activity. It is becoming increasingly apparent that controlling the immune response is as an attractive approach in regenerative medicine. Here, we propose that an in-depth understanding of immune system and tissue specific progenitor cell interactions may reveal mechanisms by which tissue healing and regeneration takes place, in addition to identifying novel therapeutic targets that could be used to enhance the tissue repair process. To date, most reviews have focused solely on macrophage subsets. This manuscript details the role of other innate and adaptive immune cells such as innate lymphoid cells (ILCs), natural killer (NK) cells and γδT cells (in addition to macrophages) in tissue healing. We also describe new approaches that are being taken to direct appropriate healing outcomes via biomaterial mediated cytokine and drug delivery. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
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49. Glutaminolysis is Essential for Myofibroblast Persistence and In Vivo Targeting Reverses Fibrosis and Cardiac Dysfunction in Heart Failure
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Gibb, Andrew A., Murray, Emma K., Huynh, Anh T., Gaspar, Ryan B., Ploesch, Tori L., Bedi, Ken, Lombardi, Alyssa A., Lorkiewicz, Pawel K., Roy, Rajika, Arany, Zolt, Kelly, Daniel P., Margulies, Kenneth B., Hill, Bradford G., and Elrod, John W.
- Published
- 2022
- Full Text
- View/download PDF
50. Affinity-bound growth factor within sulfated interpenetrating network bioinks for bioprinting cartilaginous tissues.
- Author
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Wang, Bin, Díaz-Payno, Pedro J., Browe, David C., Freeman, Fiona E., Nulty, Jessica, Burdis, Ross, and Kelly, Daniel J.
- Subjects
BIOPRINTING ,GROWTH factors ,ARTICULAR cartilage ,TISSUE engineering ,REGENERATIVE medicine ,POLYMER networks ,HEPARIN ,CARTILAGE - Abstract
3D bioprinting has emerged as a promising technology in the field of tissue engineering and regenerative medicine due to its ability to create anatomically complex tissue substitutes. However, it still remains challenging to develop bioactive bioinks that provide appropriate and permissive environments to instruct and guide the regenerative process in vitro and in vivo. In this study alginate sulfate, a sulfated glycosaminoglycan (sGAG) mimic, was used to functionalize an alginate-gelatin methacryloyl (GelMA) interpenetrating network (IPN) bioink to enable the bioprinting of cartilaginous tissues. The inclusion of alginate sulfate had a limited influence on the viscosity, shear-thinning and thixotropic properties of the IPN bioink, enabling high-fidelity bioprinting and supporting mesenchymal stem cell (MSC) viability post-printing. The stiffness of printed IPN constructs greatly exceeded that achieved by printing alginate or GelMA alone, while maintaining resilience and toughness. Furthermore, given the high affinity of alginate sulfate to heparin-binding growth factors, the sulfated IPN bioink supported the sustained release of transforming growth factor-β3 (TGF-β3), providing an environment that supported robust chondrogenesis in vitro, with little evidence of hypertrophy or mineralization over extended culture periods. Such bioprinted constructs also supported chondrogenesis in vivo , with the controlled release of TGF-β3 promoting significantly higher levels of cartilage-specific extracellular matrix deposition. Altogether, these results demonstrate the potential of bioprinting sulfated bioinks as part of a 'single-stage' or 'point-of-care' strategy for regenerating cartilaginous tissues. This study highlights the potential of using sulfated interpenetrating network (IPN) bioink to support the regeneration of phenotypically stable articular cartilage. Construction of interpenetrating networks in the bioink enables unique high-fidelity bioprinting and provides synergistic increases in mechanical properties. The presence of alginate sulfate enables the capacity of high affinity-binding of TGF-β3, which promoted robust chondrogenesis in vitro and in vivo. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
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