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Dire wolves are considered to be one of the most common and widespread large carnivores in Pleistocene America1, yet relatively little is known about their evolution or extinction. Here, to reconstruct the evolutionary history of dire wolves, we sequenced five genomes from sub-fossil remains dating from 13,000 to more than 50,000 years ago. Our results indicate that although they were similar morphologically to the extant grey wolf, dire wolves were a highly divergent lineage that split from living canids around 5.7 million years ago. In contrast to numerous examples of hybridization across Canidae2,3, there is no evidence for gene flow between dire wolves and either North American grey wolves or coyotes. This suggests that dire wolves evolved in isolation from the Pleistocene ancestors of these species. Our results also support an early New World origin of dire wolves, while the ancestors of grey wolves, coyotes and dholes evolved in Eurasia and colonized North America only relatively recently.

Close-range photographic techniques - including photogrammetry - are becoming common tools for constructing three-dimensional (3D) models of artifacts, particularly in archaeological research. Whether models obtained through photogrammetry can be used for zooarchaeological studies requires a systematic examination. In the context of research into dog domestication, we explore whether 3D models of wolf crania, obtained through a photogrammetric approach, accurately describe the original cranium in term of colouration, texture and most importantly, geometry.

•The article provides a snapshot of the current state of art, the methods and digital tools being employed in the digitisation of animal remains.•Digital technologies have the capacity to democratise science by making knowledge available to academic and non-academic audiences.•Digital twins are fundamental in Zooarchaeology because they allow us to explore new methods and approaches (e.g. 3D Geometric Morphometrics) that do not require access to the physical object.•The article raises some of the challenges that the international zooarchaeological community is facing in the era of Linked Open Data, including management, archiving, curation, storage, dissemination and communication of digital data to the scientific world and the wider public.•The article calls for a better coordination and collaboration between Digital Archaeologists and Zooarchaeologists.

Humans created an environment that increased selective pressures on subgroups of those species that became domestic. We propose that the domestication process may in some cases have been facilitated by changes in mating behaviour and resultant sperm competition. By adapting to sperm competition, proto-domestic animals could potentially have outcompeted their wild counterparts in human-constructed niches. This could have contributed to the restriction of gene flow between the proto-domesticates and their wild counterparts, thereby promoting the fixation of other domestication characteristics. Further to this novel perspective for domestication, we emphasize the general potential of postcopulatory sexual selection in the restriction of gene flow between populations, and urge more studies.