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Resuspension affects water quality in coastal environments by entraining seabed organic matter into the water column, which can increase remineralization, alter seabed fluxes, decrease water clarity, and affect oxygen and nutrient dynamics. Nearly all numerical models of water column biogeochemistry, however, simplify seabed and bottom boundary layer processes and neglect resuspension. Here we implemented HydroBioSed, a coupled hydrodynamic‐sediment transport‐biogeochemical model to examine the role of resuspension in regulating oxygen and nitrogen dynamics on timescales of a day to a month. The model was implemented for the northern Gulf of Mexico, where the extent of summertime hypoxia is sensitive to seabed and bottom boundary layer processes. Results indicated that particulate organic matter remineralization in the bottom water column increased by an order of magnitude during resuspension events. This increased sediment oxygen consumption and ammonium production, which were defined as the sum of seabed fluxes of oxygen and ammonium, plus oxygen consumption and ammonium production in the water column due to resuspended organic matter. The increases in remineralization impacted biogeochemical dynamics to a greater extent than resuspension‐induced seabed fluxes and oxidation of reduced chemical species. The effect of resuspension on bottom water biogeochemistry increased with particulate organic matter availability, which was modulated by sediment transport patterns. Overall, when averaged over the shelf and on timescales of a month in the numerical model, cycles of erosion and deposition accounted for about two thirds of sediment oxygen consumption and almost all of the sediment ammonium production. In coastal waters, oxygen and nitrogen levels affect the health of fish and other organisms. In the Gulf of Mexico, for example, low‐oxygen regions called hypoxic areas or "dead zones" form in the summertime near the seabed in "bottom water". It can be difficult to understand and quantify variations in bottom water oxygen and nitrogen levels, however, because: (1) water quality there is affected by many different physical and biological processes; and (2) observational studies are limited by cost, safety and technological advances. To complement previous observational studies, this paper used a new numerical modeling approach that accounts for many physical and biological processes in the seabed and water. Specifically, we used the model to evaluate how resuspension, especially the entrainment of organic matter from the seabed into the water, affected oxygen and nitrogen levels in the Northern Gulf of Mexico. Model results indicated that resuspension increased the decomposition of organic matter, decreasing oxygen levels and increasing ammonium (a form of nitrogen) levels in bottom water. This effect was largest in regions with abundant seabed organic matter and frequent resuspension. These modeling results can help scientists and environmental managers understand how resuspension affects oxygen and nitrogen levels in bottom waters. A hydrodynamic‐sediment transport‐biogeochemical model shows that resuspension exacerbates hypoxia in the northern Gulf of MexicoResuspension of seabed organic matter intensifies water column remineralization, increasing oxygen consumption and ammonium productionEffects of resuspension are largest in regions with abundant seabed particulate organic matter that is subject to frequent resuspension

Using laboratory and field experiments we investigated three fates of copepod carcass organic matter in the York River estuary, Virginia: ingestion by planktivores (necrophagy), microbial decomposition, and removal by gravitational settling in the presence of turbulence (sinking). The ctenophore Mnemiopsis leidyiingested live copepods and carcasses indiscriminately in feeding experiments. Microbial decomposition led to ca. 50% of carcass dry weight loss within 8 h after death. Carcass settling velocities in still water were ca. 0.1 cm s−1, implying short residence time (hours) in the shallow estuary. However, turbulent mixing kept carcasses in suspension much of the time, reducing sinking losses. Rates of carcass organic matter removal were combined in a simple mathematical model predicting the fate of estuarine copepod carcasses. When sinking was considered, it removed a large fraction of carcass organic matter (≥58% for copepodites, ≥ 35% for nauplii), with most of the remainder being removed by microbial decomposition. In the absence of sinking losses, necrophagy became proportionally more important in removing carcass organic matter (≥ 49%, except in summer).

The Yellow River is one of the most significant sources of terrestrial sediment to the global seas, and the Bohai Strait is the only pathway that delivers Yellow River‐derived sediments from the shallow Bohai Sea to the Yellow Sea. To investigate sediment transport processes through the strait under the influence of storms (strong northerly winds) that frequently occur in winter, we deployed two sets of observing platforms equipped with Acoustic Doppler Current Profilers (ADCP) and a suite of other sensors in the strait in January 2018. Aided by a system of high‐resolution models, we reconstructed sediment dynamics in response to the strong northerly wind of a winter storm. Model results show that the instantaneous suspended sediment flux (SSF) is highly aligned with tidal currents, while the net sediment flux has a clear dependence on variations in exchange flow and sediment resuspension. Enhanced coastal currents, intensified wave motions, and higher suspended sediment concentrations indicate that the through‐strait sediment flux during outflows is greater than during inflow conditions. Such SSF asymmetries are believed responsible for the net sediment export through the Bohai Strait in wintertime. Diagnostic analyses provided insights into the dynamic mechanisms of exchange flow variations influenced by both the strong northerly winds and the wind‐triggered coastal trapped waves in the shallow, narrow strait via geostrophic effects. This study highlights the importance of storm‐induced horizontal exchange processes in a coupled bay‐shelf system. The aim of this study is to characterize the dominant processes that control net wintertime sediment fluxes through a narrow strait. Flows, waves, and sediment concentration were measured in the strait during a winter storm. A well‐validated model showed that wintertime flows in the strait are dominated by alternating, strait‐wide inflow and outflow. Occasionally, however, inflows and outflows are concurrent over different sections of the strait. Based on a numerical model, our calculations of sediment flux for the entire winter revealed that large net sediment flux occurred when both winds and waves were strong. These results provide a better understanding of how sediment transport in a bay‐shelf system has driven by both local and remote forcing mechanisms. Winter storms can generate low‐frequency oscillations of barotropic flows accompanied by sea surface height fluctuations in Bohai StraitBoth local wind and wind‐triggered coastal trapped waves are responsible for exchange flow variations at synoptic time scalesThe combination of intensified wave motion and exchange flows strongly alters the pattern and quantity of the sediment flux in Bohai Strait