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Background: Human metapneumovirus (HMPV) infection causes a spectrum of respiratory tract disease, and may be a significant pathogen in the context of immunocompromise. Here, we report direct-from-sample metagenomic sequencing of HMPV using Oxford Nanopore Technology.Methods: We applied this sequencing approach to 25 respiratory samples that had been submitted to a clinical diagnostic laboratory in a UK teaching hospital. These samples represented 13 patients under the care of a haematology unit over a 20-day period in Spring 2019 (two sampled twice), and ten other patients elsewhere in the hospital between 2017-2019.Results: We generated HMPV reads from 20/25 samples (sensitivity 80% compared to routine diagnostic testing) and retrieved complete HMPV genomes from 15/20 of these. Consensus sequences from Nanopore data were identical to those generated by Illumina, and represented HMPV genomes from two distinct sublineages, A2b and B2. Sequences from ten haematology patients formed a unique genetic group in the A2b sublineage, not previously reported in the UK. Among these, eight HMPV genomes formed a cluster (differing by ≤3 SNPs), likely to reflect nosocomial transmission, while two others were more distantly related and may represent independent introductions to the haematology unit.Conclusion: Nanopore metagenomic sequencing can be used to diagnose HMPV infection, although more work is required to optimise sensitivity. Improvements in the use of metagenomic sequencing, particularly for respiratory viruses, could contribute to antimicrobial stewardship. Generation of full genome sequences can be used to support or rule out nosocomial transmission, and contribute to improving infection prevention and control practices. [ABSTRACT FROM AUTHOR]

Summary: Human metapneumovirus (hMPV) is a recently identified Paramyxovirus. The clinical features and molecular characteristics of hMPV in Asian populations have so far remained obscure. Objective: The present study was designed to investigate the prevalence of hMPV in infants and young children presented with acute lower respiratory tract infection (ALRI) and to identify the molecular characteristics and clinical presentations. Methods: There were 236 nasopharyngeal secretions (NPs) collected from infants and children presented with ALRI at King Chulalongkorn Memorial hospital between March 2001 and September 2003. Reverse transcriptase-polymerase chain reaction (RT-PCR) applying specific primers was done to identify hMPV and hRSV. Phylogenetic analysis of hMPV N, F and L genes was also performed. Results: Of the 220 (236) infants and young children tested, positive results were found in 12 specimens (5.4%). The mean age of children with hMPV infections was 22±11 months. They mostly presented with fever with cough (100%) and upper respiratory tract symptoms (10/12, 83%). Eleven of twelve infants (92%) were hospitalized. Additionally, phylogenetic analysis identified two distinct lineages of hMPV. Conclusion: Our results demonstrated the prevalence, molecular characterization and clinical spectrum of hMPV infection in infants and young children presented with lower respiratory tract infections in Thailand. [Copyright &y& Elsevier]

Summary: We describe a case of bronchiolitis associated with the newly detected human bocavirus (hBoV) in a child with a suspected Noonan syndrome. This is the first report of a bronchiolitis probably linked to hBoV that required intensive care while being accompanied by a congenital heart disease and a history of several episodes of severe respiratory symptoms. [Copyright &y& Elsevier]