1. Structure-Based Characterization and Optimization of Novel Hydrophobic Binding Interactions in a Series of Pyrrolidine Influenza Neuraminidase Inhibitors
- Author
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Maring, C. J., Stoll, V. S., Zhao, C., Sun, M., Krueger, A. C., Stewart, K. D., Madigan, D. L., Kati, W. M., Xu, Y., Carrick, R. J., Montgomery, D. A., Kempf-Grote, A., Marsh, K. C., Molla, A., Steffy, K. R., Sham, H. L., Laver, W. G., Gu, Y.-g., Kempf, D. J., and Kohlbrenner, W. E.
- Abstract
The structure−activity relationship (SAR) of a novel hydrophobic binding interaction within a subsite of the influenza neuraminidase (NA) active site was characterized and optimized for a series of trisubstituted pyrrolidine inhibitors modified at the 4-position. Previously, potent inhibitors have targeted this subsite with hydrophilic substituents such as amines and guanidines. Inhibitor-bound crystal structures revealed that hydrophobic substituents with sp2 hybridization could achieve optimal interactions by virtue of a low-energy binding conformation and favorable π-stacking interactions with the residue Glu119. From a lead methyl ester, investigation of five-membered heteroaromatic substituents at C-4 produced a 3-pyrazolyl analogue that improved activity by making a targeted hydrogen bond with Trp178. The SAR of substituted vinyl substituents at C-4 produced a Z-propenyl analogue with improved activity over the lead methyl ester. The C-1 ethyl ester prodrugs of the substituted C-4 vinyl analogues gave compounds with excellent oral bioavailability (F > 60%) when dosed in rat.
- Published
- 2005