115 results on '"Bøggild, P."'
Search Results
2. Probing Carrier Dynamics in Large-Scale MBE-Grown PtSe2Films by Terahertz Spectroscopy
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Ji, Jie, Zhou, Yingqiu, Zhou, Binbin, Desgué, Eva, Legagneux, Pierre, Jepsen, Peter Uhd, and Bøggild, Peter
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Atomically thin platinum diselenide (PtSe2) films are promising for applications in the fields of electronics, spintronics, and photodetectors owing to their tunable electronic structure and high carrier mobility. Using terahertz (THz) spectroscopy techniques, we investigated the layer-dependent semiconducting-to-metallic phase transition and associated intrinsic carrier dynamics in large-scale PtSe2films grown by molecular beam epitaxy. The uniformity of large-scale PtSe2films was characterized by spatially and frequency-resolved THz-based sheet conductivity mapping. Furthermore, we use an optical-pump-THz-probe technique to study the transport dynamics of photoexcited carriers and explore light-induced intergrain carrier transport in PtSe2films. We demonstrate large-scale THz-based mapping of the electrical properties of transition metal dichalcogenide films and show that the two noncontact THz-based approaches provide insight in the spatial and temporal properties of PtSe2films.
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- 2023
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3. Long-Term Quality of Life After Out-of-Hospital Cardiac Arrest
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Yonis, Harman, Sørensen, Kathrine Kold, Bøggild, Henrik, Ringgren, Kristian Bundgaard, Malta Hansen, Carolina, Granger, Christopher B., Folke, Fredrik, Christensen, Helle Collatz, Jensen, Britta, Andersen, Mikkel Porsborg, Joshi, Vicky L., Zwisler, Ann-Dorthe, Torp-Pedersen, Christian, and Kragholm, Kristian
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IMPORTANCE: Allocating resources to increase survival after cardiac arrest requires survivors to have a good quality of life, but long-term data are lacking. OBJECTIVE: To determine the quality of life of survivors of out-of-hospital cardiac arrest from 2001 to 2019. DESIGN, SETTING, AND PARTICIPANTS: This survey study used the EuroQol Health Questionnaire, 12-Item Short Form Health Survey (SF-12), and Hospital Anxiety and Depression Scale (HADS) to assess the health-related quality of life of all adult survivors of out-of-hospital cardiac arrest included in the Danish Cardiac Arrest Registry between June 1, 2001, and August 31, 2019, who were alive in October 2020 (follow-up periods, 0-1, >1-2, >2-4, >4-6, >6-8, >8-10, >10-15, and >15-20 years since arrest). The survey was conducted from October 1, 2020, through May 31, 2021. EXPOSURE: All patients who experienced an out-of-hospital cardiac arrest. MAIN OUTCOME AND MEASURES: Self-reported health was measured using the EuroQol Health Questionnaire index (EQ index) score and EQ visual analog scale. Physical and mental health were measured using the SF-12, and anxiety and depression were measured using the HADS. Descriptive statistics were used for the analysis. RESULTS: Of 4545 survivors, 2552 (56.1%) completed the survey, with a median follow-up since their event of 5.5 years (IQR, 2.9-8.9 years). Age was comparable between responders and nonresponders (median [IQR], 67 [58-74] years vs 68 [56-78] years), and 2075 responders (81.3%) were men and 477 (18.7%) women (vs 1473 male [73.9%] and 520 female [26.1%] nonresponders). For the shortest follow-up (0-1 year) and longest follow-up (>15-20 years) groups, the median EQ index score was 0.9 (IQR, 0.7-1.0) and 0.9 (0.8-1.0), respectively. For all responders, the mean (SD) SF-12 physical health score was 43.3 (12.3) and SF-12 mental health score, 52.9 (8.3). All 3 scores were comparable to a general Danish reference population. Based on HADS scores, a low risk for anxiety was reported by 73.0% (54 of 74) of 0- to 1-year survivors vs 89.3% (100 of 112) of greater than 15- to 20-year survivors; for symptoms of depression, these proportions were 79.7% (n = 59) and 87.5% (n = 98), respectively. Health-related quality of life was similar in survivor groups across all follow-up periods. CONCLUSIONS AND RELEVANCE: Among this survey study’s responders, who comprised more than 50% of survivors of out-of-hospital cardiac arrest in Denmark, long-term health-related quality of life up to 20 years after their event was consistently high and comparable to that of the general population. These findings support resource allocation and efforts targeted to increasing survival after out-of-hospital cardiac arrest.
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- 2023
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4. Structure, folding and flexibility of co-transcriptional RNA origami
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McRae, Ewan K. S., Rasmussen, Helena Østergaard, Liu, Jianfang, Bøggild, Andreas, Nguyen, Michael T. A., Sampedro Vallina, Nestor, Boesen, Thomas, Pedersen, Jan Skov, Ren, Gang, Geary, Cody, and Andersen, Ebbe Sloth
- Abstract
RNA origami is a method for designing RNA nanostructures that can self-assemble through co-transcriptional folding with applications in nanomedicine and synthetic biology. However, to advance the method further, an improved understanding of RNA structural properties and folding principles is required. Here we use cryogenic electron microscopy to study RNA origami sheets and bundles at sub-nanometre resolution revealing structural parameters of kissing-loop and crossover motifs, which are used to improve designs. In RNA bundle designs, we discover a kinetic folding trap that forms during folding and is only released after 10 h. Exploration of the conformational landscape of several RNA designs reveal the flexibility of helices and structural motifs. Finally, sheets and bundles are combined to construct a multidomain satellite shape, which is characterized by individual-particle cryo-electron tomography to reveal the domain flexibility. Together, the study provides a structural basis for future improvements to the design cycle of genetically encoded RNA nanodevices.
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- 2023
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5. Nanoscale View of Engineered Massive Dirac Quasiparticles in Lithographic Superstructures.
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Jones, Alfred J. H., Gammelgaard, Lene, Sauer, Mikkel O., Biswas, Deepnarayan, Koch, Roland J., Jozwiak, Chris, Rotenberg, Eli, Bostwick, Aaron, Watanabe, Kenji, Taniguchi, Takashi, Dean, Cory R., Jauho, Antti-Pekka, Bøggild, Peter, Pedersen, Thomas G., Jessen, Bjarke S., and Ulstrup, Søren
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- 2022
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6. Fermi Level Depinning in Two-Dimensional Materials Using a Fluorinated Bilayer Graphene Barrier.
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Sun, Cunzhi, Xiang, Cheng, Hong, Rongdun, Zhang, Feng, Booth, Timothy J., Bøggild, Peter, and Doan, Manh-Ha
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- 2022
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7. Chemical Vapor-Deposited Graphene on Ultraflat Copper Foils for van der Waals Hetero-Assembly.
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Pizzocchero, Filippo, Jessen, Bjarke S., Gammelgaard, Lene, Andryieuski, Andrei, Whelan, Patrick R., Shivayogimath, Abhay, Caridad, José M., Kling, Jens, Petrone, Nicholas, Tang, Peter T., Malureanu, Radu, Hone, James, Booth, Timothy J., Lavrinenko, Andrei, and Bøggild, Peter
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- 2022
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8. Nanoscale View of Engineered Massive Dirac Quasiparticles in Lithographic Superstructures
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Jones, Alfred J. H., Gammelgaard, Lene, Sauer, Mikkel O., Biswas, Deepnarayan, Koch, Roland J., Jozwiak, Chris, Rotenberg, Eli, Bostwick, Aaron, Watanabe, Kenji, Taniguchi, Takashi, Dean, Cory R., Jauho, Antti-Pekka, Bøggild, Peter, Pedersen, Thomas G., Jessen, Bjarke S., and Ulstrup, Søren
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Massive Dirac fermions are low-energy electronic excitations characterized by a hyperbolic band dispersion. They play a central role in several emerging physical phenomena such as topological phase transitions, anomalous Hall effects, and superconductivity. This work demonstrates that massive Dirac fermions can be controllably induced by lithographically patterning superstructures of nanoscale holes in a graphene device. Their band dispersion is systematically visualized using angle-resolved photoemission spectroscopy with nanoscale spatial resolution. A linear scaling of effective mass with feature sizes is reported, underlining the Dirac nature of the superstructures. In situelectrostatic doping dramatically enhances the effective hole mass and leads to the direct observation of an electronic band gap that results in a peak-to-peak band separation of 0.64 ± 0.03 eV, which is shown via first-principles calculations to be strongly renormalized by carrier-induced screening. The methodology demonstrates band structure engineering guided by directly viewing structurally and electrically tunable massive Dirac quasiparticles in lithographic superstructures at the nanoscale.
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- 2022
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9. Cardiac Arrhythmia and Hypoglycemia in Patients Receiving Hemodialysis with and without Diabetes (the CADDY study): A Danish Multicenter Cohort Study
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Kofod, Dea Haagensen, Diederichsen, Søren Zöga, Bomholt, Tobias, Ørbæk Andersen, Mads, Mannheimer, Ebba, Rix, Marianne, Liem, Ylian Serina, Lindhard, Kristine, Hansen, Henrik Post, Rydahl, Casper, Lindhardt, Morten, Schandorff, Kristine D., Brøsen, Julie Maria Bøggild, Lange, Theis, Noergaard, Kirsten, Almdal, Thomas Peter, Svendsen, Jesper Hastrup Hastrup, Feldt-Rasmussen, Bo, and Hornum, Mads
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- 2024
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10. Super-Resolution Nanolithography of Two-Dimensional Materials by Anisotropic Etching.
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Danielsen, Dorte R., Lyksborg-Andersen, Anton, Nielsen, Kirstine E. S., Jessen, Bjarke S., Booth, Timothy J., Doan, Manh-Ha, Zhou, Yingqiu, Bøggild, Peter, and Gammelgaard, Lene
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- 2021
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11. Risk of Developing Hypokalemia in Patients With Hypertension Treated With Combination Antihypertensive Therapy.
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Krogager, Maria Lukács, Mortensen, Rikke Nørmark, Lund, Peter Enemark, Bøggild, Henrik, Hansen, Steen Møller, Kragholm, Kristian, Aasbjerg, Kristian, Søgaard, Peter, and Torp-Pedersen, Christian
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Little is known about the occurrence of hypokalemia due to combination therapy for hypertension. Using data from Danish administrative registries, we investigated the association between different combinations of antihypertensive therapy and risk of developing hypokalemia. Using incidence density matching, 2 patients without hypokalemia were matched to a patient with hypokalemia (K, <3.5 mmol/L) on age, sex, renal function, and time between index date and date of potassium measurement. Combination therapies were subdivided into 10 groups including β-blockers (BB)+thiazides (BB+thiazides), calcium channel blockers (CCB)+renin angiotensin system inhibitors (RASi)+thiazides (CCB+RASi+Thiazides), calcium channel blockers+thiazides (CCB+thiazides), and β-blockers+renin angiotensin system inhibitors+thiazides (BB+RASi+thiazides). We used conditional logistic regression to estimate the odds of developing hypokalemia for different combinations of antihypertensive drugs within 90 days of combination therapy initiation. We matched 463 patients with hypokalemia to 926 patients with normal potassium concentrations. The multivariable analysis showed 5.82× increased odds of developing hypokalemia if administered CCB+thiazides (95% CI, 3.06-11.08) compared with CCB+RASi. Other combinations significantly associated with increased hypokalemia odds were BB+thiazides (odds ratio, 3.34 [95% CI, 1.67-6.66]), CCB+RASi+thiazides (odds ratio, 3.07 [95% CI, 1.72-5.46]), and BB+RASi+thiazides (odds ratio, 2.78 [95% CI, 1.41-5.47]). Combinations of thiazides with CCB, RASi, or BB were strongly associated with increased hypokalemia risk within 90 days of treatment initiation. [ABSTRACT FROM AUTHOR]
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- 2020
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12. Graphene-Subgrain-Defined Oxidation of Copper.
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Luo, Birong, Koleini, Mohammad, Whelan, Patrick R., Shivayogimath, Abhay, Brandbyge, Mads, Bøggild, Peter, and Booth, Timothy J.
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- 2019
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13. Single-Crystalline Gold Nanodisks on WS2 Mono- and Multilayers for Strong Coupling at Room Temperature.
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Geisler, Mathias, Ximin Cui, Jianfang Wang, Rindzevicius, Tomas, Gammelgaard, Lene, Jessen, Bjarke S., Gonçalves, P. A. D., Todisco, Francesco, Bøggild, Peter, Boisen, Anja, Wubs, Martijn, Mortensen, N. Asger, Xiao, Sanshui, and Stenger, Nicolas
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- 2019
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14. Do-It-Yourself Transfer of Large-Area Graphene Using an Office Laminator and Water.
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Shivayogimath, Abhay, Whelan, Patrick Rebsdorf, Mackenzie, David M.A., Luo, Birong, Huang, Deping, Luo, Da, Wang, Meihui, Gammelgaard, Lene, Shi, Haofei, Ruoff, Rodney S., Bøggild, Peter, and Booth, Timothy J.
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- 2019
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15. Førtidspension fra kompensationstanke til udviklingsfokus.
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Amby, Finn, Schaldemose, Sisse, and Christensen, Anders Bøggild
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Copyright of Journal of Work / Tidsskrift for Arbejdsliv is the property of Journal of Work / Tidsskrift for Arbejdsliv and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2019
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16. Oxidation of Suspended Graphene: Etch Dynamics and Stability Beyond 1000 °C.
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Thomsen, Joachim Dahl, Kling, Jens, Mackenzie, David M. A., Bøggild, Peter, and Booth, Timothy J.
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- 2019
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17. A Graphene-Edge Ferroelectric Molecular Switch.
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Caridad, José M., Calogero, Gaetano, Pedrinazzi, Paolo, Santos, Jaime E., Impellizzeri, Anthony, Gunst, Tue, Booth, Timothy J., Sordan, Roman, Bøggild, Peter, and Brandbyge, Mads
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- 2018
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18. Implementation of the 2014 reform of social assistance at job centres in Denmark – categorizing young clients
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Braun, Thorsten and Bøggild Christensen, Anders
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ABSTRACTThe Danish government has imposed numerous significant reforms in the employment policy field in recent years. One of the much-debated reforms is on social assistance. One of the specific intentions was a new look and strategy towards youth unemployment by introducing new categories. This leaves the discretion involved in categorization very much at the centre of the reform. This study explores and compares two job centres and the street level social workers discretion of young social assistance recipients. This article argues that the context of implementation affects the discretion carried out by the frontline professionals. Organizations are not just neutral mediators, because organization affects the output. Organizations tends to transform policy and become important in the daily judgement made by frontline professionals of what is correct professionalism. We argue that an implementation context characterized by paradigmatic implementation tends to categorize relatively more young clients as ‘ready for education’, whereas this is not the case for incremental implementation. In both cases, the adaptations of the reform are important. The choice of how to implement and how to organize the implementation of reforms influences the actual discretion. The caseworkers in both job centres are influenced by the organization wherein they work but at the same time have individual room for discretion. It seems as though the different kinds of implementation contexts affect how the individual caseworker mediates the legislation and becomes a policy mediator. The street level organization affects the output whereby they become mediators.
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- 2020
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19. Graphene-Subgrain-Defined Oxidation of Copper
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Luo, Birong, Koleini, Mohammad, Whelan, Patrick R., Shivayogimath, Abhay, Brandbyge, Mads, Bøggild, Peter, and Booth, Timothy J.
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The correlation between the crystal structure of chemical vapor deposition (CVD)-grown graphene and the crystal structure of the Cu growth substrate and their mutual effect on the oxidation of the underlying Cu are systematically explored. We report that natural oxygen or water intercalation along the graphene–Cu interface results in an orientation-dependent oxidation rate of the Cu surface, particularly noticeable for bicrystal graphene domains on the same copper grain, suggesting that the relative crystal orientation of subgrains determines the degree of Cu oxidation. Atomistic force field calculations support these observations, showing that graphene domains have preferential alignment with the Cu(111) with a smaller average height above the global Cu surface as compared to intermediate orientations, and that this is the origin of the heterogeneous oxidation rate of Cu. This work demonstrates that the natural oxidation resistance of Cu coated by graphene is highly dependent on the crystal orientation and lattice alignment of Cu and graphene, which is key information for engineering the interface configuration of the graphene–Cu system for specific functionalities in mechanical, anticorrosion, and electrical applications of CVD-grown graphene.
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- 2019
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20. Do-It-Yourself Transfer of Large-Area Graphene Using an Office Laminator and Water
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Shivayogimath, Abhay, Whelan, Patrick Rebsdorf, Mackenzie, David M.A., Luo, Birong, Huang, Deping, Luo, Da, Wang, Meihui, Gammelgaard, Lene, Shi, Haofei, Ruoff, Rodney S., Bøggild, Peter, and Booth, Timothy J.
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We demonstrate a simple method for transferring large areas (up to A4-size sheets) of CVD graphene from copper foils onto a target substrate using a commercially available polyvinyl alcohol polymer foil as a carrier substrate and commercial hot-roll office laminator. Through the use of terahertz time-domain spectroscopy and Raman spectroscopy, large-area quantitative optical contrast mapping, and the fabrication and electrical characterization of ∼50 individual centimeter-scale van der Pauw field effect devices, we show a nondestructive technique to transfer large-area graphene with low residual doping that is scalable, economical, reproducible, and easy to use and that results in less doping and transfer-induced damage than etching or electrochemical delamination transfers. We show that the copper substrate can be used multiple times with minimal loss of material and no observable reduction in graphene quality. We have additionally demonstrated the transfer of multilayer hexagonal boron nitride from copper and iron foils. Finally, we note that this approach allows graphene to be supplied on stand-alone polymer supports by CVD graphene manufacturers to end users, with the only equipment and consumables required to transfer graphene onto target substrates being a commercial office laminator and water.
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- 2019
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21. Lithographic band structure engineering of graphene
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Jessen, Bjarke S., Gammelgaard, Lene, Thomsen, Morten R., Mackenzie, David M. A., Thomsen, Joachim D., Caridad, José M., Duegaard, Emil, Watanabe, Kenji, Taniguchi, Takashi, Booth, Timothy J., Pedersen, Thomas G., Jauho, Antti-Pekka, and Bøggild, Peter
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Two-dimensional materials such as graphene allow direct access to the entirety of atoms constituting the crystal. While this makes shaping by lithography particularly attractive as a tool for band structure engineering through quantum confinement effects, edge disorder and contamination have so far limited progress towards experimental realization. Here, we define a superlattice in graphene encapsulated in hexagonal boron nitride, by etching an array of holes through the heterostructure with minimum feature sizes of 12–15 nm. We observe a magnetotransport regime that is distinctly different from the characteristic Landau fan of graphene, with a sizeable bandgap that can be tuned by a magnetic field. The measurements are accurately described by transport simulations and analytical calculations. Finally, we observe strong indications that the lithographically engineered band structure at the main Dirac point is cloned to a satellite peak that appears due to moiré interactions between the graphene and the encapsulating material.
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- 2019
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22. Syncope and Its Impact on Occupational Accidents and Employment: A Danish Nationwide Retrospective Cohort Study.
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Numé, Anna-Karin, Kragholm, Kristian, Carlson, Nicolas, Kristensen, Søren L., Bøggild, Henrik, Hlatky, Mark A., Torp-Pedersen, Christian, Gislason, Gunnar, and Ruwald, Martin H.
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SYNCOPE diagnosis ,AGE distribution ,CARDIOVASCULAR diseases ,MENTAL depression ,EMPLOYMENT ,HOSPITAL care ,WORK-related injuries ,INDUSTRIAL hygiene ,RISK assessment ,COMORBIDITY ,SYNCOPE ,EDUCATIONAL attainment ,DISEASE incidence ,ACQUISITION of data ,RETROSPECTIVE studies ,THERAPEUTICS - Abstract
Background: First-time syncopal episodes usually occur in adults of working age, but their impact on occupational safety and employment remains unknown. We examined the associations of syncope with occupational accidents and termination of employment.Methods and Results: Through linkage of Danish population-based registers, we included all residents 18 to 64 years from 2008 to 2012. Among 3 410 148 eligible individuals, 21 729 with a first-time diagnosis of syncope were identified, with a median age 48.4 years (first to third quartiles, 33.0-59.5), and 10 757 (49.5%) employed at time of the syncope event. Over a median follow-up of 3.2 years (first to third quartiles, 2.0-4.5), 622 people with syncope had an occupational accident requiring hospitalization (2.1/100 person-years). In multiple Poisson regression analysis, the incidence rate ratio in the employed syncope population was higher than in the employed general population (1.44; 95% confidence interval [CI], 1.33-1.55) and more pronounced in people with recurrences (2.02; 95% CI, 1.47-2.78). The 2-year risk of termination of employment was 31.3% (95% CI, 30.4%-32.3%), which was twice the risk of the reference population (15.2%; 95% CI, 14.7%-15.7%), using the Aalen-Johansen estimator. Factors associated with termination of employment were age <40 years (incidence rate ratio, 1.48; 95% CI, 1.37-1.59), cardiovascular disease (1.20; 95% CI, 1.06-1.36), depression (1.72; 95% CI, 1.55-1.90), and low educational level (2.61; 95% CI, 2.34-2.91).Conclusions: In this nationwide cohort, syncope was associated with a 1.4-fold higher risk of occupational accidents and a 2-fold higher risk of termination of employment compared with the employed general population. [ABSTRACT FROM AUTHOR]- Published
- 2017
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23. Differential integrin expression regulates cell sensing of the matrix nanoscale geometry.
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Di Cio, Stefania, Bøggild, Thea M.L., Connelly, John, Sutherland, Duncan S., and Gautrot, Julien E.
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INTEGRINS ,PROTEIN expression ,CELL differentiation ,CELLULAR control mechanisms ,NANOSCIENCE ,EXTRACELLULAR matrix - Abstract
The nanoscale geometry and topography of the extra-cellular matrix (ECM) is an important parameter controlling cell adhesion and phenotype. Similarly, integrin expression and the geometrical maturation of adhesions they regulate have been correlated with important changes in cell spreading and phenotype. However, how integrin expression controls the nanoscale sensing of the ECM geometry is not clearly understood. Here we develop a new nanopatterning technique, electrospun nanofiber lithography (ENL), which allows the production of a quasi-2D fibrous nanopattern with controlled dimensions (250–1000 nm) and densities. ENL relies on electrospun fibres to act as a mask for the controlled growth of protein-resistant polymer brushes. SEM, AFM and immunofluorescence imaging were used to characterise the resulting patterns and the adsorption of the extra-cellular matrix protein fibronectin to the patterned fibres. The control of adhesion formation was studied, as well as the remodelling and deposition of novel matrix. Cell spreading was found to be regulated by the size of fibres, similarly to previous observations made on circular nanopatterns. However, cell shape and polarity were more significantly affected. These changes correlated with important cytoskeleton reorganisation, with a gradual decrease in stress fibre formation as the pattern dimensions decrease. Finally, the differential expression of αvβ3 and α5β1 integrins in engineered cell lines was found to be an important mediator of cell sensing of the nanoscale geometry of the ECM. Statement of Significance The novel nanofiber patterns developed in this study, via ENL, mimic the geometry and continuity of natural matrices found in the stroma of tissues, whilst preserving a quasi-2D character (to facilitate imaging and for comparison with other 2D systems such as micropatterned monolayers and circular nanopatches generated by colloidal lithography). These results demonstrate that the nanoscale geometry of the ECM plays an important role in regulating cell adhesion and that this is modulated by integrin expression. This is an important finding as it implies that the knowledge of the biochemical context underlying the integrin-mediated adhesive machinery of specific cell types should allow better design of biomaterials and biointerfaces. Indeed, changes in integrin expression are often associated with the control of cell proliferation and differentiation. [ABSTRACT FROM AUTHOR]
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- 2017
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24. Oxidation of Suspended Graphene: Etch Dynamics and Stability Beyond 1000 °C
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Thomsen, Joachim Dahl, Kling, Jens, Mackenzie, David M. A., Bøggild, Peter, and Booth, Timothy J.
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We study the oxidation of clean suspended mono- and few-layer graphene in real time by in situenvironmental transmission electron microscopy. At an oxygen pressure below 0.1 mbar, we observe anisotropic oxidation in which armchair-oriented hexagonal holes are formed with a sharp edge roughness below 1 nm. At a higher pressure, we observe an increasingly isotropic oxidation, eventually leading to irregular holes at a pressure of 6 mbar. In addition, we find that few-layer flakes are stable against oxidation at temperatures up to at least 1000 °C in the absence of impurities and electron-beam-induced defects. These findings show, first, that the oxidation behavior of mono- and few-layer graphene depends critically on the intrinsic roughness, cleanliness and any imposed roughness or additional reactivity from a supporting substrate and, second, that the activation energy for oxidation of pristine suspended few-layer graphene is up to 43% higher than previously reported for graphite. In addition, we have developed a cleaning scheme that results in the near-complete removal of hydrocarbon residues over the entire visible sample area. These results have implications for applications of graphene where edge roughness can critically affect the performance of devices and more generally highlight the surprising (meta)stability of the basal plane of suspended bilayer and thicker graphene toward oxidative environments at high temperature.
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- 2019
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25. Electrical Homogeneity Mapping of Epitaxial Graphene on Silicon Carbide
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Whelan, Patrick R., Panchal, Vishal, Petersen, Dirch H., Mackenzie, David M. A., Melios, Christos, Pasternak, Iwona, Gallop, John, Østerberg, Frederik W., U. Jepsen, Peter, Strupinski, Wlodek, Kazakova, Olga, and Bøggild, Peter
- Abstract
Epitaxial graphene is a promising route to wafer-scale production of electronic graphene devices. Chemical vapor deposition of graphene on silicon carbide offers epitaxial growth with layer control but is subject to significant spatial and wafer-to-wafer variability. We use terahertz time-domain spectroscopy and micro four-point probes to analyze the spatial variations of quasi-freestanding bilayer graphene grown on 4 in. silicon carbide (SiC) wafers and find significant variations in electrical properties across large regions, which are even reproduced across graphene on different SiC wafers cut from the same ingot. The dc sheet conductivity of epitaxial graphene was found to vary more than 1 order of magnitude across a 4 in. SiC wafer. To determine the origin of the variations, we compare different optical and scanning probe microscopies with the electrical measurements from nano- to millimeter scale and identify three distinct qualities of graphene, which can be attributed to the microstructure of the SiC surface.
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- 2018
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26. A Graphene-Edge Ferroelectric Molecular Switch
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Caridad, José M., Calogero, Gaetano, Pedrinazzi, Paolo, Santos, Jaime E., Impellizzeri, Anthony, Gunst, Tue, Booth, Timothy J., Sordan, Roman, Bøggild, Peter, and Brandbyge, Mads
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We show that polar molecules (water, ammonia, and nitrogen dioxide) adsorbed solely at the exposed edges of an encapsulated graphene sheet exhibit ferroelectricity, collectively orienting and switching reproducibly between two available states in response to an external electric field. This ferroelectric molecular switching introduces drastic modifications to the graphene bulk conductivity and produces a large and ambipolar charge bistability in micrometer-size graphene devices. This system comprises an experimental realization of envisioned memory capacitive (“memcapacitive”) devices whose capacitance is a function of their charging history, here conceived via confined and correlated polar molecules at the one-dimensional edge of a two-dimensional crystal.
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- 2018
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27. A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema.
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Trojan, Daniela, Schreiber, Lars, Bjerg, Jesper T., Bøggild, Andreas, Yang, Tingting, Kjeldsen, Kasper U., and Schramm, Andreas
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FILAMENTOUS bacteria ,BACTERIA phylogeny ,BACTERIA morphology ,BACTERIAL genetics ,BACTERIA classification ,ELECTRIC currents - Abstract
Cable bacteria are long, multicellular filaments that can conduct electric currents over centimeter-scale distances. All cable bacteria identified to date belong to the deltaproteobacterial family Desulfobulbaceae and have not been isolated in pure culture yet. Their taxonomic delineation and exact phylogeny is uncertain, as most studies so far have reported only short partial 16S rRNA sequences or have relied on identification by a combination of filament morphology and 16S rRNA-targeted fluorescence in situ hybridization with a Desulfobulbaceae -specific probe. In this study, nearly full-length 16S rRNA gene sequences of 16 individual cable bacteria filaments from freshwater, salt marsh, and marine sites of four geographic locations are presented. These sequences formed a distinct, monophyletic sister clade to the genus Desulfobulbus and could be divided into six coherent, species-level clusters, arranged as two genus-level groups. The same grouping was retrieved by phylogenetic analysis of full or partial dsr AB genes encoding the dissimilatory sulfite reductase. Based on these results, it is proposed to accommodate cable bacteria within two novel candidate genera: the mostly marine “ Candidatus Electrothrix”, with four candidate species, and the mostly freshwater “ Candidatus Electronema”, with two candidate species. This taxonomic framework can be used to assign environmental sequences confidently to the cable bacteria clade, even without morphological information. Database searches revealed 185 16S rRNA gene sequences that affiliated within the clade formed by the proposed cable bacteria genera, of which 120 sequences could be assigned to one of the six candidate species, while the remaining 65 sequences indicated the existence of up to five additional species. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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28. Copper Oxidation through Nucleation Sites of Chemical Vapor Deposited Graphene.
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Luo, Birong, Whelan, Patrick R., Shivayogimath, Abhay, Mackenzie, David M. A., Bøggild, Peter, and Booth, Timothy J.
- Published
- 2016
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29. Transfer of Direct and Moiré Patterns by ReactiveIon Etching Through Ex Situ Fabricated Nanoporous Polymer Masks.
- Author
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Violetta Shvets, Thomas Hentschel, Lars Schulte, Lisa K. Tschammer, Alberto Cagliani, Peter Bøggild, Kristoffer Almdal, and Sokol Ndoni
- Published
- 2015
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30. Selective Electroless Silver Deposition on Graphene Edges.
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Durhuus, D., Larsen, M. V., Andryieuski, A., Malureanu, R., Pizzocchero, F., Bøggild, P., and Lavrinenko, A. V.
- Subjects
ELECTROLESS deposition ,SEDIMENTATION & deposition research ,GRAPHENE ,SILVER nanoparticles ,SILICA - Abstract
We demonstrate a method of electroless selective silver deposition on graphene edges or between graphene islands without covering the surface of graphene. Modifications of the deposition recipe allow for decoration of graphene edges with silver nanoparticles or filling holes in damaged graphene on silica substrate and thus potentially restoring electric connectivity with minimal influence on the overall graphene electrical and optical properties. The presented technique could find applications in graphene based transparent conductors as well as selective edge functionalization and can be extended to other metals than silver. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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31. Device-Oriented Studies on Electrical, Optical, and Mechanical Properties of Individual Organic Nanofibers.
- Author
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Hull, R., Osgood, R. M., Parisi, J., Warlimont, H., Al-Shamery, Katharina, Rubahn, Horst-Günter, Sitter, Helmut, Kjelstrup-Hansen, J., Bøggild, P., Henrichsen, H. H., Brewer, J., and Rubahn, H. -G.
- Abstract
Organic nanofibers are promising candidates for future nanophotonic and nanoelectronic devices due to their optical, electrical, chemical, and morphological properties. Para-hexaphenylene (p6P) as well as diverse functionalized quaterphenylene molecules such as p-methyloxylated p-quaterphenylene (MOP4) [1] or p-chlorinated p-quaterphenylene (CLP4) [2] form well-aligned needles or "nanofibers" upon vacuum epitaxy on muscovite mica substrates [3, 4]. In this chapter we will use the words "nanofiber" and "needle" synonymously. The nanofibers consist of large single crystalline areas of molecules oriented nearly parallel to the substrate surface with typical dimensions of a few hundred nanometers in width, a few ten nanometers in height, and several hundred micrometers in length. Partly due to their crystalline order and morphology the nanofibers show photonic functionalities such as waveguiding [5-7], lasing [8] as well as nonlinear optical activity [9, 10]. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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32. "Like a rainy weather inside of me": Qualitative content analysis of telephone consultations concerning back pain preceding out-of-hospital cardiac arrest.
- Author
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Jensen, Britta, Vardinghus-Nielsen, Henrik, Mills, Elisabeth Helen Anna, Møller, Amalie Lykkemark, Gnesin, Filip, Zylyftari, Nertila, Kragholm, Kristian, Folke, Fredrik, Christensen, Helle Collatz, Blomberg, Stig Nikolaj, Torp-Pedersen, Christian, and Bøggild, Henrik
- Abstract
• Back pain early warning sign preceding out-of-hospital cardiac arrest is experienced in variety of ways both in relation to location as well as complex descriptions. • The professional call-taker must be aware that patients are not trained health professionals, that can communicate according to the health system's own logic. • Following this, call-takers should perhaps be trained to disregard the immediate diagnostic conclusions made by the patient. Cardiac arrest patients presenting with back pain are at risk of not receiving the appropriate help when calling emergency medical services. In telephone consultations regarding patients with back pain preceding an out-of-hospital cardiac arrest, we investigated how communication between caller and call-taker influenced the call-taker's interpretation of back pain descriptions and decision-making about choice of response. The study was conducted using 20 recorded phone calls from 17 patients who contacted the Copenhagen Emergency Medical Services (Denmark) reporting back pain up to 24 hours before an out-of-hospital cardiac arrest. Qualitative content analysis was applied. Two main categories emerged: (1) reasons, including subcategories: reported conditions, descriptions of conditions, patient's interpretation of condition and patient's own remedial actions; and (2) considerations, including subcategories: assessment of the severity, call-taker's interpretation of the condition, arguments for chosen response and conditions not facilitating further communication by the call-taker. In telephone consultations regarding patients with back pain preceding an out-of-hospital cardiac arrest the communication was influenced by the communicative preconditions of the call-taker. Communication in consultations where ambulances were not dispatched was characterized by complex descriptions of symptoms not easily fitting into the health system's interpretations of conditions warranting an urgent response. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
33. Catalyst Interface Engineering for Improved 2D Film Lift-Off and Transfer
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Wang, Ruizhi, Whelan, Patrick R., Braeuninger-Weimer, Philipp, Tappertzhofen, Stefan, Alexander-Webber, Jack A., Van Veldhoven, Zenas A., Kidambi, Piran R., Jessen, Bjarke S., Booth, Timothy, Bøggild, Peter, and Hofmann, Stephan
- Abstract
The mechanisms by which chemical vapor deposited (CVD) graphene and hexagonal boron nitride (h-BN) films can be released from a growth catalyst, such as widely used copper (Cu) foil, are systematically explored as a basis for an improved lift-off transfer. We show how intercalation processes allow the local Cu oxidation at the interface followed by selective oxide dissolution, which gently releases the 2D material (2DM) film. Interfacial composition change and selective dissolution can thereby be achieved in a single step or split into two individual process steps. We demonstrate that this method is not only highly versatile but also yields graphene and h-BN films of high quality regarding surface contamination, layer coherence, defects, and electronic properties, without requiring additional post-transfer annealing. We highlight how such transfers rely on targeted corrosion at the catalyst interface and discuss this in context of the wider CVD growth and 2DM transfer literature, thereby fostering an improved general understanding of widely used transfer processes, which is essential to numerous other applications.
- Published
- 2016
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34. SorCS2 is required for BDNF-dependent plasticity in the hippocampus
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Glerup, S, Bolcho, U, Mølgaard, S, Bøggild, S, Vaegter, C B, Smith, A H, Nieto-Gonzalez, J L, Ovesen, P L, Pedersen, L F, Fjorback, A N, Kjolby, M, Login, H, Holm, M M, Andersen, O M, Nyengaard, J R, Willnow, T E, Jensen, K, and Nykjaer, A
- Abstract
SorCS2 is a member of the Vps10p-domain receptor gene family receptors with critical roles in the control of neuronal viability and function. Several genetic studies have suggested SORCS2to confer risk of bipolar disorder, schizophrenia and attention deficit-hyperactivity disorder. Here we report that hippocampal N-methyl-d-aspartate receptor-dependent synaptic plasticity is eliminated in SorCS2-deficient mice. This defect was traced to the ability of SorCS2 to form complexes with the neurotrophin receptor p75NTR, required for pro-brain-derived neurotrophic factor (BDNF) to induce long-term depression, and with the BDNF receptor tyrosine kinase TrkB to elicit long-term potentiation. Although the interaction with p75NTRwas static, SorCS2 bound to TrkB in an activity-dependent manner to facilitate its translocation to postsynaptic densities for synaptic tagging and maintenance of synaptic potentiation. Neurons lacking SorCS2 failed to respond to BDNF by TrkB autophosphorylation, and activation of downstream signaling cascades, impacting neurite outgrowth and spine formation. Accordingly, Sorcs2–/–mice displayed impaired formation of long-term memory, increased risk taking and stimulus seeking behavior, enhanced susceptibility to stress and impaired prepulse inhibition. Our results identify SorCS2 as an indispensable coreceptor for p75NTRand TrkB in hippocampal neurons and suggest SORCS2as the link between proBDNF/BDNF signaling and mental disorders.
- Published
- 2016
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35. High‐affinity von Willebrand factor binding does not affect the anatomical or hepatocellular distribution of factor VIII in rats
- Author
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Øie, C.I., Roepstorff, K., Behrens, C., Bøggild Kristensen, J., Karpf, D.M., Bolt, G., Gudme, C.N., Kjalke, M., Smedsrød, B., and Appa, R.S.
- Abstract
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- Published
- 2016
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36. Nanopattern Gradients for Cell Studies Fabricated Using Hole-Mask Colloidal Lithography
- Author
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Bøggild, Thea, Runager, Kasper, and Sutherland, Duncan S.
- Abstract
Culturing cells on gradient nanopatterns provides a useful tool to explore cellular adhesion to mimics of the extracellular matrix or screen for cellular responses to nanopatterns. A method is presented to fabricate complex gradient protein patterns based on hole-mask colloidal lithography, which can generate nanopatterns in multiple materials and of multiple shapes. Gradients of gold structures were functionalized to form gradients of protein nanopatterns of different shapes (bars, dot pairs, and rings), where a key parameter was systematically varied in each gradient. Cells were grown on vitronectin nanopatterns, showing differential adhesion (spread area/focal adhesion size) along the gradients.
- Published
- 2016
- Full Text
- View/download PDF
37. Electrically Continuous Graphene from Single CrystalCopper Verified by Terahertz Conductance Spectroscopy and Micro Four-PointProbe.
- Author
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Buron, Jonas D., Pizzocchero, Filippo, Jessen, Bjarke S., Booth, Timothy J., Nielsen, Peter F., Hansen, Ole, Hilke, Michael, Whiteway, Eric, Jepsen, Peter U., Bøggild, Peter, and Petersen, Dirch H.
- Published
- 2014
- Full Text
- View/download PDF
38. Plasmon–Phonon Coupling in Large-Area GrapheneDot and Antidot Arrays Fabricated by Nanosphere Lithography.
- Author
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Zhu, Xiaolong, Wang, Weihua, Yan, Wei, Larsen, Martin B., Bøggild, Peter, Pedersen, Thomas Garm, Xiao, Sanshui, Zi, Jian, and Mortensen, N. Asger
- Published
- 2014
- Full Text
- View/download PDF
39. Control of proliferation and osteogenic differentiation of human dental-pulp-derived stem cells by distinct surface structures.
- Author
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Kolind, K., Kraft, D., Bøggild, T., Duch, M., Lovmand, J., Pedersen, F.S., Bindslev, D.A., Bünger, C.E., Foss, M., and Besenbacher, F.
- Subjects
BONE growth ,CELL differentiation ,DENTAL pulp ,STEM cells ,CELL membranes ,TISSUE engineering ,DRUG use testing ,REGENERATIVE medicine - Abstract
Abstract: The ability to control the behavior of stem cells provides crucial benefits, for example, in tissue engineering and toxicity/drug screening, which utilize the stem cell’s capacity to engineer new tissues for regenerative purposes and the testing of new drugs in vitro. Recently, surface topography has been shown to influence stem cell differentiation; however, general trends are often difficult to establish due to differences in length scales, surface chemistries and detailed surface topographies. Here we apply a highly versatile screening approach to analyze the interplay of surface topographical parameters on cell attachment, morphology, proliferation and osteogenic differentiation of human mesenchymal dental-pulp-derived stem cells (DPSCs) cultured with and without osteogenic differentiation factors in the medium (ODM). Increasing the inter-pillar gap size from 1 to 6μm for surfaces with small pillar sizes of 1 and 2μm resulted in decreased proliferation and in more elongated cells with long pseudopodial protrusions. The same alterations of pillar topography, up to an inter-pillar gap size of 4μm, also resulted in enhanced mineralization of DPSCs cultured without ODM, while no significant trend was observed for DPSCs cultured with ODM. Generally, cells cultured without ODM had a larger deposition of osteogenic markers on structured surfaces relative to the unstructured surfaces than what was found when culturing with ODM. We conclude that the topographical design of biomaterials can be optimized for the regulation of DPSC differentiation and speculate that the inclusion of ODM alters the ability of the cells to sense surface topographical cues. These results are essential in order to transfer the use of this highly proliferative, easily accessible stem cell into the clinic for use in cell therapy and regenerative medicine. [Copyright &y& Elsevier]
- Published
- 2014
- Full Text
- View/download PDF
40. Graphene Conductance Uniformity Mapping.
- Author
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Buron, Jonas D., Petersen, Dirch H., Bøggild, Peter, Cooke, David G., Hilke, Michael, Sun, Jie, Whiteway, Eric, Nielsen, Peter F., Hansen, Ole, Yurgens, August, and Jepsen, Peter U.
- Published
- 2012
- Full Text
- View/download PDF
41. Transmission Electron Microscopy Study of Individual Carbon Nanotube Breakdown Caused by Joule Heating in Air.
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Kristian Mølhave, Sven Bjarke Gudnason, Anders Tegtmeier Pedersen, Casper Hyttel Clausen, Andy Horsewell, and Peter Bøggild
- Published
- 2006
- Full Text
- View/download PDF
42. Ars moriendi more regio: Royal Death in Sixteenth Century Denmark
- Author
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Bøggild Johannsen, Birgitte
- Abstract
AbstractThe article focuses upon the liturgical, monumental and literary staging of royal funerals in Denmark during the period 1526–1588. The seven cases analysed, reflecting both a transitional phase and the age of consolidation before and after the official institutionalization of the Lutheran Reformation in 1536, are read as equally exceptional and exemplary in a Protestant context. Attention in particular is given to various discourses on the value of traditions, on the display of magnificence versus the ideal of simplicity and on the Lutheran ideal of dissociation between the community of the dead and the living. In these issues, the royal funerals in several respects demonstrate the major power of continuity, especially during moments of crisis to the society deliberately stabilizing the changed status quothrough the incessantly significant reference to the legitimizing past.
- Published
- 2014
- Full Text
- View/download PDF
43. Graphene Edges Dictate the Morphology of Nanoparticles during Catalytic Channeling
- Author
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Pizzocchero, Filippo, Vanin, Marco, Kling, Jens, Hansen, Thomas W., Jacobsen, Karsten W., Bøggild, Peter, and Booth, Timothy J.
- Abstract
We perform in-situ transmission electron microscopy (TEM) experiments of silver nanoparticles channeling on mono-, bi-, and few-layer graphene and discover that the interactions in the one-dimensional particle–graphene contact line are sufficiently strong so as to dictate the three-dimensional shape of the nanoparticles. We find a characteristic faceted shape in particles channeling along graphene ⟨100⟩ directions that is lost during turning and thus represents a dynamic equilibrium state of the graphene–particle system. We propose a model for the mechanism of zigzag edge formation and an explanation of the rate-limiting step for this process, supported by density functional theory (DFT) calculations, and obtain a good agreement between the DFT-predicted and experimentally obtained activation energies of 0.39 and 0.56 eV, respectively. Understanding the origin of the channels' orientation and the strong influence of the graphene lattice on the dynamic behavior of the particle morphology could be crucial for obtaining deterministic nanopatterning on the atomic scale.
- Published
- 2014
- Full Text
- View/download PDF
44. Mutational analysis of the yeast RNA helicase Sub2p reveals conserved domains required for growth, mRNA export, and genomic stability
- Author
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Saguez, Cyril, Gonzales, Fernando A., Schmid, Manfred, Bøggild, Andreas, Latrick, Chrysa M., Malagon, Francisco, Putnam, Andrea, Sanderson, Lee, Jankowsky, Eckhard, Brodersen, Ditlev E., and Jensen, Torben Heick
- Abstract
Sub2p/UAP56 is a highly conserved DEAD-box RNA helicase involved in the packaging and nuclear export of mRNA. Here we analyze S. cerevisiaeSub2p functions in vivo and in vitro and find that a conserved N-terminal motif is required for mRNA export without affecting Sub2p helicase activity. Mutants in the helicase domain are trans-dominant negative and cause hyper-recombination.
- Published
- 2013
- Full Text
- View/download PDF
45. How to grow your cable bacteria: Establishment of a stable single-strain culture in sediment and proposal of Candidatus Electronema aureum GS.
- Author
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Thorup, Casper, Petro, Caitlin, Bøggild, Andreas, Ebsen, Tine Sneibjerg, Brokjær, Signe, Nielsen, Lars Peter, Schramm, Andreas, and Bjerg, Jesper Jensen
- Subjects
CANDIDATUS ,MARINE bacteria ,SEDIMENTS ,BACTERIA ,ELECTRON transport ,FILAMENTOUS bacteria - Abstract
Cable bacteria are multicellular filamentous bacteria within the Desulfobulbaceae that couple the oxidation of sulfide to the reduction of oxygen over centimeter distances via long distance electron transport (LDET). So far, none of the freshwater or marine cable bacteria species have been isolated into pure culture. Here we describe a method for establishing a stable single-strain cable bacterium culture in partially sterilized sediment. By repeated transfers of a single cable bacterium filament from freshwater pond sediment into autoclaved sediment, we obtained strain GS, identified by its 16S rRNA gene as a member of Ca. Electronema. This strain was further propagated by transferring sediment clumps, and has now been stable within its semi-natural microbial community for several years. Its metagenome-assembled genome was 93% complete, had a size of 2.76 Mbp, and a DNA G + C content of 52%. Average Nucleotide Identity (ANI) and Average Amino Acid Identity (AAI) suggest the affiliation of strain GS to Ca. Electronema as a novel species. Cell size, number of outer ridges, and detection of LDET in the GS culture are likewise consistent with Ca. Electronema. Based on these combined features, we therefore describe strain GS as a new cable bacterium species of the candidate genus Electronema, for which we propose the name Candidatus Electronema aureum sp.nov. Although not a pure culture, this stable single-strain culture will be useful for physiological and omics-based studies; similar approaches with single-cell or single-filament transfers into natural medium may also aid the characterization of other difficult-to-culture microbes. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
46. Graphene Oxide as a Monoatomic Blocking Layer
- Author
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Petersen, Søren, Glyvradal, Magni, Bøggild, Peter, Hu, Wenping, Feidenhans'l, Robert, and Laursen, Bo W.
- Abstract
Monolayer graphene oxide (mGO) is shown to effectively protect molecular thin films from reorganization and function as an atomically thin barrier for vapor-deposited Ti/Al metal top electrodes. Fragile organic Langmuir–Blodgett (LB) films of C22fatty acid cadmium salts (cadmium(II) behenate) were covered by a compressed mosaic LB film of mGO flakes. These hybrid LB films were examined with atomic force microscopy (AFM) and X-ray reflectivity, both with and without the metal top electrodes. While the AFM enabled surface and morphology analysis, the X-ray reflectivity allowed for a detailed structural depth profiling of the organic film and mGO layer below the metal top layers. The structure of the mGO-protected LB films was found to be perfectly preserved; in contrast, it has previously been shown that metal deposition completely destroys the first two LB layers of unprotected films. This study provides clear evidence of the efficient protection offered by a single atomic layer of GO.
- Published
- 2012
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- View/download PDF
47. Simple Approach to Superamphiphobic Overhanging Silicon Nanostructures
- Author
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Rajendra Kumar, Ramasamy Thangavelu, Mogensen, Klaus Bo, and Bøggild, Peter
- Abstract
Superhydrophobic silicon nanostructures were fabricated by anisotropic etching of silicon coated with a thin hydrophobic layer. At certain etch parameters, overhanging nanostructures form at the apexes of the rod-shaped tips. This leads to superoleophobic behavior for several oily liquids with contact angles up to 152° and roll-off angle down to 8°. Such nonlithographic nanoscale overhanging structures can also be added to silicon nanograss by deposition of a thin SiO2layer, which equips the silicon rods with 100−300 nm sized overhanging structures. This is a simple, fast, nonlithographic method for introducing amphiphobic behavior on a surface consisting of vertically aligned micro- or nanostructures.
- Published
- 2010
- Full Text
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48. Irony Haunts
- Author
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Bøggild, Jacob
- Published
- 2009
- Full Text
- View/download PDF
49. An Hfq-like protein in archaea: crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii.
- Author
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Nielsen, Jesper S, Bøggild, Andreas, Andersen, Christian B F, Nielsen, Gorm, Boysen, Anders, Brodersen, Ditlev E, and Valentin-Hansen, Poul
- Abstract
The Sm and Sm-like proteins are conserved in all three domains of life and have emerged as important players in many different RNA-processing reactions. Their proposed role is to mediate RNA-RNA and/or RNA-protein interactions. In marked contrast to eukaryotes, bacteria appear to contain only one distinct Sm-like protein belonging to the Hfq family of proteins. Similarly, there are generally only one or two subtypes of Sm-related proteins in archaea, but at least one archaeon, Methanococcus jannaschii, encodes a protein that is related to Hfq. This archaeon does not contain any gene encoding a conventional archaeal Sm-type protein, suggesting that Hfq proteins and archaeal Sm-homologs can complement each other functionally. Here, we report the functional characterization of M. jannaschii Hfq and its crystal structure at 2.5 A resolution. The protein forms a hexameric ring. The monomer fold, as well as the overall structure of the complex is similar to that found for the bacterial Hfq proteins. However, clear differences are seen in the charge distribution on the distal face of the ring, which is unusually negative in M. jannaschii Hfq. Moreover, owing to a very short N-terminal alpha-helix, the overall diameter of the archaeal Hfq hexamer is significantly smaller than its bacterial counterparts. Functional analysis reveals that Escherichia coli and M. jannaschii Hfqs display very similar biochemical and biological properties. It thus appears that the archaeal and bacterial Hfq proteins are largely functionally interchangeable.
- Published
- 2007
- Full Text
- View/download PDF
50. Reflections of Kierkegaard in the Tales of Hans Christian Andersen
- Author
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Bøggild, Jacob
- Published
- 2006
- Full Text
- View/download PDF
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