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The incubation behavior of geese seriously affects their egg production performance. Studies on incubation behavior have identified functional genes, but the regulatory architecture relationship between functional genes and chromatin accessibility remains poorly understood. Here, we present an integrated analysis of open chromatin profiles and transcriptome to identify the cis-regulatory element and their potential transcription factors involved in regulating incubation behavior in goose pituitary. Assay for transposase-accessible chromatin sequencing (ATAC-seq) revealed that open chromatin regions increased in the pituitary during the transition from incubation behavior to laying. We identified 920 significant differential accessible regions (DARs) in the pituitary. Compared to the laying stage, most DARs had higher chromatin accessibility in the brooding stage. Motif analysis of open DARs showed that the most significant transcription factor (TF) occupied sites predominantly enriched in motifs binding to the RFX family (RFX5, RFX2, and RFX1). While the majority of TF motifs enriched under sites of the nuclear receptor (NR) family (ARE, GRE, and PGR) in closed DARs at the incubation behavior stage. Footprint analysis indicated that the transcription factor RFX family exhibited higher binding on chromatin at the brooding stage. To further elucidate the effect of changes in chromatin accessibility on gene expression levels, a comparison of the transcriptome revealed 279 differentially expressed genes (DEGs). The transcriptome changes were associated with processes of steroid biosynthesis. By integrating ATAC-seq and RNA-seq, few DARs directly affect incubation behavior by regulating the transcription levels of genes. Five DAR-related DEGs were found to be closely related to maintaining the incubation behavior in geese. Footprinting analysis revealed a set of transcription factors (RFX1, RFX2, RFX3, RFX5, BHLHA15, SIX1, and DUX) which displayed the highest activity at the brooding stage. SREBF2 was predicted to be the unique differentially expressed transcription factor whose mRNA level was down-regulated and enriched in hyper-accessible regions of PRL in the broody stage. In the present study, we comprehensively profiled the transcriptome and chromatin accessibility in the pituitary related to incubation behavior. Our findings provided insight into the identification and analysis of regulatory elements in goose incubation behavior. The epigenetic alterations profiled here can help decipher the epigenetic mechanisms that contribute to the regulation of incubation behavior in birds.

In ground nesting upland birds, reproductive activities contribute to elevated predation risk, so females presumably use multiple strategies to ensure nest success. Identification of drivers reducing predation risk has primarily focused on evaluating vegetative conditions at nest sites, but behavioral decisions manifested through movements during incubation may be additional drivers of nest survival. However, our understanding of how movements during incubation impact nest survival is limited for most ground nesting birds. Using GPS data collected from female Eastern Wild Turkeys (n = 206), we evaluated nest survival as it relates to movement behaviors during incubation, including recess frequency, distance traveled during recesses, and habitat selection during recess movements. We identified 9,361 movements off nests and 6,529 recess events based on approximately 62,065 hr of incubation data, and estimated mean nest attentiveness of 84.0%. The numbers of recesses taken daily were variable across females (range: 1‒7). Nest survival modeling indicated that increased cumulative distance moved during recesses each day was the primary driver of positive daily nest survival. Our results suggest behavioral decisions are influencing trade‐offs between nest survival and adult female survival during incubation to reduce predation risk, specifically through adjustments to distances traveled during recesses., Identification of drivers reducing predation risk have primarily focused on evaluating vegetative conditions at nest sites, but behavioral decisions manifested through movements during incubation may be additional drivers of nest survival. Using GPS data collected from female Eastern wild turkeys (n = 206), and we evaluated nest survival as it relates to movement behaviors during incubation, including recess frequency, distance traveled during recesses, and habitat utilization during recess movements. Our results suggest behavioral decisions are influencing trade‐offs during incubation to reduce predation risk to nests, specifically through distance traveled during recesses.

Our understanding of fundamental organismal biology has been disproportionately influenced by studies of a relatively small number of model' species extensively studied in captivity. Laboratory populations of model species are commonly subject to a number of forms of past and current selection that may affect experimental outcomes. Here, we examine these processes and their outcomes in one of the most widely used vertebrate species in the laboratory - the zebra finch (Taeniopygia guttata). This important model species is used for research across a broad range of fields, partly due to the ease with which it can be bred in captivity. However despite this perceived amenability, we demonstrate extensive variation in the success with which different laboratories and studies bred their subjects, and overall only 64% of all females that were given the opportunity, bred successfully in the laboratory. We identify and review several environmental, husbandry, life-history and behavioural factors that potentially contribute to this variation. The variation in reproductive success across individuals could lead to biases in experimental outcomes and drive some of the heterogeneity in research outcomes across studies. The zebra finch remains an excellent captive animal system and our aim is to sharpen the insight that future studies of this species can provide, both to our understanding of this species and also with respect to the reproduction of captive animals more widely. We hope to improve systematic reporting methods and that further investigation of the issues we raise will lead both to advances in our fundamental understanding of avian reproduction as well as to improvements in future welfare and experimental efficiency.

Predation and brood parasitism have critical effects on the fitness of animals, but few studies have focused on the potential interactions between these two important selective forces. For instance, the egg-rejection process, one of the most important defensive responses of hosts against brood parasites, may be affected by variation in predation risk, which might divert their focus from the nest (present reproduction) to self-maintenance (future reproduction). In this study we explore the effect of predation risk on the first two stages of the egg-rejection process (judgment and decision) and if this potential effect changes according to the target of predation (adults vs offspring). To do so, we experimentally parasitized nests of common blackbirds (Turdus merula) with mimetic model eggs simultaneously exposing them to different predation-risk situations: adult predator, egg predator, and control. We found that predation risk did not affect egg recognition. Nevertheless, blackbirds exposed to the adult predation risk showed a significant reduction in the ejection rate, particularly at the end of the breeding season. We discuss our results in relation to the egg-rejection process and life-history theory. Our findings suggest that a predation risk directed to adults of parasitized nests, but not to their offspring, can play an important role in the blackbirds' decision-making influencing the ejection of parasitic eggs, consequently affecting the outcome of the evolutionary relationship between brood parasites and their hosts.Significance statementBrood parasitism and predation are two important selective forces in nature, which play a crucial role in the evolutionary process in birds. Despite this, few studies have explored the possible relationships between these two selective pressures. In particular, the possibility that predation risk affects host defenses against brood parasites has usually been neglected. Predation risk could influence the egg-rejection process, which is the main defensive measure adopted by hosts once they have been parasitized. In this study we showed that predation risk seems to modulate host defenses against brood parasites in common blackbirds, but depending on the threat posed by predators. In particular, adult predation risk affects the second stage of the egg-rejection process reducing the ejection rate of parasitic eggs. Our results open a new line of research in brood parasitism studies, demonstrating that external stimuli to brood parasite-host systems can influence egg-rejection decisions.

Due to the reduced conspicuousness of female signals, their evolution has traditionally been interpreted as a by-product of sexual or natural selection in males. Recent studies have argued that they may be the result of sexual or social selection acting on females. Here, we explored the role of the white wing patch during the incubation period in female-female competition contests in a migratory cavity-nesting songbird, the pied flycatcher Ficedula hypoleuca. At this stage, female investment is crucial for offspring survival, while competition among females for nest cavities is still operating. We experimentally performed an extreme reduction of signaling capacity by covering the wing patch with dark paint in a group of females and compared their incubation attendance and social interaction patterns (vigilance and aggression at the nest as defense variables) during simulated territorial intrusion tests with female decoys, with those of an unmanipulated group of females. Tests were performed both before and after the manipulation. We hypothesized that these patches constitute signals of social dominance in female-female interactions that allow them to maintain high levels of incubation attendance by reducing the need for vigilance. We found a marked decrease in incubation attendance in experimental females after manipulation, a change that was not found in the control group. Moreover, vigilance decreased in the control group after the manipulation, a change not detected in manipulated females. No effects on aggressive nest defense were found. Female wing ornamental traits would act as a badge of status in social interactions allowing more intense incubation and reduced vigilance. Implications of social interactions on incubation patterns should be incorporated in future studies. Significance statement: Animals can transmit information to the others through different traits. Ornamental signals have been proposed as status indicators in social interactions in birds in many studies. Although some of them concern their function and evolution in females, only a few have been focused on their role during incubation. Our experimental study suggests that the female’s white wing patch in pied flycatchers acts as a badge of dominance status in social encounters. Thus, dominant females may enforce respect from competitors through signaling, thereby being able to reduce vigilance at the nest with positive effects on incubation efficiency. Implications of social status for incubation patterns should be considered in future studies as an additional factor modulating this crucial parental activity., This study was financed by project CGL2013-48193-C3-3-P to JM from Spanish Ministerio de Economía y Competitividad. MP and AC were supported by FPI and FPU grants from Ministerio de Economía y Competitividad and Ministerio de Educación, respectively.

Parental care plays a key role in ontogeny, life-history trade-offs, sexual selection and intrafamilial conflict. Studies focusing on understanding causes and consequences of variation in parental effort need to quantify parental behaviour accurately. The applied methods are, however, diverse even for a given species and type of parental effort, and rarely validated for accuracy. Here we focus on variability of parental behaviour from a methodological perspective to investigate the effect of different samplings on various estimates of parental effort. We used nest box cameras in a captive breeding population of zebra finches, Taeniopygia guttata, a widely used model system of sexual selection, intra-familial dynamics and parental care. We investigated diurnal and reproductive stage-dependent variation in parental effort (including incubation, brooding, nest attendance and number of feedings) based on 12h and 3h continuous video-recordings taken at various reproductive stages. We then investigated whether shorter (1h) sampling periods provided comparable estimates of overall parental effort and division of labour to those of longer (3h) sampling periods. Our study confirmed female-biased division of labour during incubation, and showed that the difference between female and male effort diminishes with advancing reproductive stage. We found individually consistent parental behaviours within given days of incubation and nestling provisioning. Furthermore, parental behaviour was consistent over the different stages of incubation, however, only female brooding was consistent over nestling provisioning. Parental effort during incubation did not predict parental effort during nestling provisioning. Our analyses revealed that 1h sampling may be influenced heavily by stochastic and diurnal variation. We suggest using a single longer sampling period (3h) may provide a consistent and accurate estimate for overall parental effort during incubation in zebra finches. Due to the large within-individual variation, we suggest repeated longer sampling over the reproductive stage may be necessary for accurate estimates of parental effort post-hatching.

Our understanding of fundamental organismal biology has been disproportionately influenced by studies of a relatively small number of ‘model’ species extensively studied in captivity. Laboratory populations of model species are commonly subject to a number of forms of past and current selection that may affect experimental outcomes. Here, we examine these processes and their outcomes in one of the most widely used vertebrate species in the laboratory – the zebra finch (Taeniopygia guttata). This important model species is used for research across a broad range of fields, partly due to the ease with which it can be bred in captivity. However despite this perceived amenability, we demonstrate extensive variation in the success with which different laboratories and studies bred their subjects, and overall only 64% of all females that were given the opportunity, bred successfully in the laboratory. We identify and review several environmental, husbandry, life-history and behavioural factors that potentially contribute to this variation. The variation in reproductive success across individuals could lead to biases in experimental outcomes and drive some of the heterogeneity in research outcomes across studies. The zebra finch remains an excellent captive animal system and our aim is to sharpen the insight that future studies of this species can provide, both to our understanding of this species and also with respect to the reproduction of captive animals more widely. We hope to improve systematic reporting methods and that further investigation of the issues we raise will lead both to advances in our fundamental understanding of avian reproduction as well as to improvements in future welfare and experimental efficiency.

International audience; Hormones regulate many aspects of an individual's phenotype, including various physiological and behavioral traits. Two hormones have been described as important players in the regulation of parental investment in birds: the glucocorticoid hormone corticosterone and prolactin, a pituitary hormone, widely involved in mediating parental behavior. In comparison with corticosterone, the role of prolactin on parental investment remains poorly documented, and most studies so far have been correlative. In this study, the effects of an experimental decrease of prolactin levels on the incubation behavior of a long-lived seabird species were assessed. Male Adélie penguins were treated with self-degradable bromocriptine pellets, inhibiting prolactin secretion. Filming and subsequent video analysis allowed the determination of a behavioral time budget for birds and their position on the nest, while dummy eggs recorded incubation parameters. Incubation duration and breeding success at hatching were also monitored. As expected, bromocriptine-treatment significantly decreased plasma prolactin levels, but did not affect corticosterone levels. The behavioral time budget of penguins was not affected by the treatment. However, treated birds spent significantly more time in an upright position on the nest. These birds also incubated their eggs at lower temperatures and turned their eggs more frequently than controls, resulting in a lengthened incubation period. Despite this, the treatment was insufficient to trigger nest desertion and eggs of treated birds still hatched, indicating that several endocrine signals are required for the induction of nest abandonment. We suggest that the decreased prolactin levels in treated birds offset their timeline of breeding, so that birds displayed behavior typical of early incubation.

For organisms living in seasonal environments, synchronizing the peak energetic demands of reproduction with peak food availability is a key challenge. Understanding the extent to which animals can adjust behavior to optimize reproductive timing, and the cues they use to do this, is essential for predicting how they will respond to future climate change. In birds, the timing of peak energetic demand is largely determined by the timing of clutch initiation; however, considerable alterations can still occur once egg laying has begun. Here, we use a wild population of great tits (Parus major) to quantify individual variation in different aspects of incubation behavior (onset, duration, and daily intensity) and conduct a comprehensive assessment of the causes and consequences of this variation. Using a 54‐year dataset, we demonstrate that timing of hatching relative to peak prey abundance (synchrony) is a better predictor of reproductive success than clutch initiation or clutch completion timing, suggesting adjustments to reproductive timing via incubation are adaptive in this species. Using detailed in‐nest temperature recordings, we found that postlaying, birds improved their synchrony with the food peak primarily by varying the onset of incubation, with duration changes playing a lesser role. We then used a sliding time window approach to explore which spring temperature cues best predict variance in each aspect of incubation behavior. Variation in the onset of incubation correlated with mean temperatures just prior to laying; however, incubation duration could not be explained by any of our temperature variables. Daily incubation intensity varied in response to daily maximum temperatures throughout incubation, suggesting female great tits respond to temperature cues even in late stages of incubation. Our results suggest that multiple aspects of the breeding cycle influence the final timing of peak energetic demand. Such adjustments could compensate, in part, for poor initial timing, which has significant fitness impacts.

Some parameters of the breeding biology of the Chiguanco Thrush (Turdus chiguanco) are described in Chaco Serrano forest of Córdoba, Argentina. Searching and monitoring of the Chiguanco Thrush nests were performed between October 2010 and February 2011. We monitored 35 nests of this species. Seven species of trees and bushes, two of them exotics, were used for nesting, mainly at medium height of the plant. Clutch size ranged between two to three eggs; only two nests were parasitized by the Shiny Cowbird (Molothrus bonariensis). The incubation period was 11–12 days long and nestlings hatched asynchronously in clutches of three eggs. Only 10% of nests were successful. From the unsuccessful nests, 97% were predated. The daily rate of nest predation was 0.86 ± 0.02. Only females were responsible for incubation. Females incubated intermittently for periods of 16:24 ± 3:16 min, and took recess bouts of 13:11 ± 2:20 min Describimos parámetros de la biología reproductiva del Zorzal Chiguanco (Turdus chiguanco) en el Bosque Serrano de Córdoba, Argentina. Buscamos y monitoreamos nidos de la citada especie entre octubre 2010 y febrero 2011. Se siguieron un total de 35 nidos de esta especie. Siete especies de árboles y arbustos, dos de ellas exóticas, fueron usadas para nidificar principalmente a una altura media en la planta. El tamaño de la puesta osciló entre dos y tres huevos; sólo dos nidos fueron parasitados por el Tordo Renegrido (Molothrus bonariensis). El período de incubación fue de 11–12 días, y el nacimiento de los pichones fue asincrónico sólo en nidos con 3 huevos. Un 10% del total de nidos fueron exitosos. De los nidos no exitosos, la principal causa de fallo fue la depredación (97%). La tasa diaria de depredación de nidos fue de 0,86 ± 0,02. Sólo las hembras se encargaron de la incubación. Las hembras incubaron intermitentemente por períodos de 16:24 ± 3:16 min, tomando recesos fuera del nido de 13:11 ± 2:20 min. Fil: Vergara Tabares, David Lautaro. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Centro Cientifico Tecnologico Cordoba. Instituto de Diversidad y Ecologia Animal; Argentina. Universidad Nacional de Cordoba. Facultad de Cs.exactas Fisicas y Naturales. Centro de Zoologia Aplicada; Argentina Fil: Peluc, Susana Ines. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Centro Cientifico Tecnologico Cordoba. Instituto de Diversidad y Ecologia Animal; Argentina. Universidad Nacional de Cordoba. Facultad de Cs.exactas Fisicas y Naturales. Centro de Zoologia Aplicada; Argentina

1. The huge changes in population sizes of Arctic-nesting geese offer a great opportunity to study population limitation in migratory animals. In geese, population limitation seems to have shifted from wintering to summering grounds. There, in the Arctic, climate is rapidly changing, and this may impact reproductive performance, and perhaps population size of geese, both directly (e.g. by changes in snow melt) or indirectly (e.g. by changes in trophic interactions). 2. Dark-bellied brent geese (Branta bernicla bernicla L.) increased 20-fold since the 1950s. Its reproduction fluctuates strongly in concert with the 3-year lemming cycle. An earlier analysis, covering the growth period until 1988, did not find evidence for density dependence, but thereafter the population levelled off and even decreased. The question is whether this is caused by changes in lemming cycles, population density or other factors like carry-over effects. 3. Breeding success was derived from proportions of juveniles. We used an information-theoretical approach to investigate which environmental factors best explained the variation in breeding success over nearly 50 years (1960–2008). We subsequently combined GLM predictions of breeding success with published survival estimates to project the population trajectory since 1991 (year of maximum population size). In this way, we separated the effects of lemming abundance and population density on population development. 4. Breeding success was mainly dependent on lemming abundance, the onset of spring at the breeding grounds, and the population size of brent goose. No evidence was found for carryover effects (i.e. effects of conditions at main spring staging site). Negative density dependence was operating at a population size above c. 200 000 individuals, but the levelling off of the population could be explained by faltering lemming cycles alone. 5. Lemmings have long been known to affect population productivity of Arctic-nesting migratory birds and, more recently, possibly population dynamics of resident bird species, but this is the first evidence for effects of lemming abundance on population size of a migratory bird species. Why lemming cycles are faltering in the last two decades is unclear, but this may be associated with changes in winter climate at Taimyr Peninsula (Siberia). Key-words: bird migration, climate change, dark-bellied brent goose, density dependence, reproductive success

WOS:A1997XR96600019; International audience; Hens raised in three different environments were assessed for changes in egg production performance, the rate of incubation behavior expression, and plasma levels of luteinizing hormone (LH) and prolactin for 20 wk following the laying of the first egg. The environments were individual (IFP) or collective floor pens (CFP) and individual battery cages (Cp and Cnp). The hens from three experimental groups (IFP, CFP, and Cp) were transferred from a short (6 h) to a long (14 h) photoperiod, whereas the ones from the remnant (Cnp) were left under a short one. Increase of the photoperiod induced significant increases (P \textless 0.05) in levels of prolactin and LH after I d, and resulted in the onset of egg laying in a delay of 14 d in all groups. However, the overall egg laying performance was highest for the IFP hens. The CFP and IFP hens laid 98 and 24% of their eggs inside the nest boxes, respectively. The hens raised in battery cages did not express incubation behavior, whereas 50 and 33%, respectively, of the CFP and IFP hens did. During the Ist wk of egg laying, levels of prolactin increased for all photostimulated hens but to a greater extent for CFP hens. Higher increases in levels of prolactin were associated with the expression of incubation behavior; however, prolactin levels of nonincubating laying hens were also higher under the CFP treatment. It appears that the rate of expression of incubation behavior, as well as changes in the plasma levels of prolactin and LH throughout an egg production period, are dependent upon rearing conditions in turkey hens.