41 results on '"Ziyuan He"'
Search Results
2. Proinflammatory polarization of monocytes by particulate air pollutants is mediated by induction of trained immunity in pediatric asthma
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Hesam Movassagh, Mary Prunicki, Abhinav Kaushik, Xiaoying Zhou, Diane Dunham, Eric M. Smith, Ziyuan He, German R. Aleman Muench, Minyi Shi, Annika K. Weimer, Shu Cao, Sandra Andorf, Amir Feizi, Michael P. Snyder, Pejman Soroosh, Elizabeth D. Mellins, and Kari C. Nadeau
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Immunology ,Immunology and Allergy - Abstract
The impact of exposure to air pollutants, such as fine particulate matter (PM), on the immune system and its consequences on pediatric asthma are not well understood. We investigated whether the ambient levels of fine PM with aerodynamic diameter ≤ 2.5 microns (PM ) are associated with alterations in circulating monocytes in children with or without asthma. Increased exposure to ambient PM was linked to specific monocyte subtypes, particularly in children with asthma. Mechanistically, we hypothesized that innate trained immunity is evoked by a primary exposure to fine PM and accounts for an enhanced inflammatory response after secondary stimulation in vitro. We determined that the trained immunity was induced in circulating monocytes by fine particulate pollutants, and it was characterized by upregulation of proinflammatory mediators, such as TNF, IL-6, and IL-8, upon stimulation with house dust mite or LPS. This phenotype was epigenetically controlled by enhanced H3K27ac marks in circulating monocytes. The specific alterations of monocytes after ambient pollution exposure suggest a possible prognostic immune signature for pediatric asthma, and pollution-induced trained immunity may provide a potential therapeutic target for asthmatic children living in areas with increased air pollution.
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- 2023
3. Research on domain text classification method based on BERT
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Shaohui Xie, Yangsen Zhang, Zhengyu Hou, Zhenjiang Su, Renjie Wang, and Ziyuan He
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- 2022
4. Distinct Heterogeneity in the Naive T cell Compartments of Children and Adults
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Claire E. Gustafson, Zachary Thomson, Ziyuan He, Elliott Swanson, Katherine Henderson, Mark-Phillip Pebworth, Lauren Y. Okada, Alexander T. Heubeck, Charles R. Roll, Veronica Hernandez, Morgan Weiss, Palak C. Genge, Julian Reading, Josephine R. Giles, Sasikanth Manne, Jeanette Dougherty, CJ Jasen, Allison R. Greenplate, Lynne A. Becker, Lucas T. Graybuck, Suhas V. Vasaikar, Gregory L. Szeto, Adam K. Savage, Cate Speake, Jane H. Buckner, Xiao-jun Li, Troy R. Torgerson, E. John Wherry, Thomas F. Bumol, Laura A. Vella, Sarah E. Henrickson, and Peter J. Skene
- Abstract
The naive T cell compartment undergoes multiple changes across age that associate with altered susceptibility to infection and autoimmunity. In addition to the acquisition of naive-like memory T cell subsets, mouse studies describe substantial molecular reprogramming of the naive compartment in adults compared with adolescents. However, these alterations are not well delineated in human aging. Using a new trimodal single cell technology (TEA-seq), we discovered that the composition and transcriptional and epigenetic programming of the naive T cell compartment in children (11-13 yrs) is distinct from that of older adults (55-65 yrs). Naive CD4 T cells, previously considered relatively resistant to aging, exhibited far more pronounced molecular reprogramming than naive CD8 T cells, in which alterations are preferentially driven by shifts in naive-like memory subsets. These data reveal the complex nature of the naive T cell compartment that may contribute to differential immune responses across the spectrum of human age.One Sentence Summary:The naive CD8 and CD4 T cell compartments in humans are heterogeneous and impacted differently with age, in which naive CD8 T cell subsets dramatically shift in composition and true naive CD4 T cells display significant molecular re-programming.
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- 2022
5. Research on the construction method of encrypted malicious traffic detection system based on machine learning
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Qihao Cheng, Yangsen Zhang, Ziyuan He, and Xiang Chen
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- 2022
6. Luminescent dual-network hydrogels based on terpyridine-Eu(III) supramolecular coordination: Fluorene as antenna
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Pan Liu, Chenchen Ma, Zihan Ma, Ziyuan He, Xianjian Wang, Longhao Zhao, and Xuegang Chen
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Process Chemistry and Technology ,General Chemical Engineering - Published
- 2023
7. Asthma phenotypes, associated comorbidities, and long‐term symptoms in COVID‐19
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R. Sharon Chinthrajah, Kari C. Nadeau, Shu Cao, Sayantani B. Sindher, William Collins, Gopal Krishna R. Dhondalay, Benjamin A. Pinsky, Theo T Snow, Alexandra S. Lee, Andra L. Blomkalns, Shirley Y. Jiang, Neera Ahuja, Lauren E. Eggert, Ruth O'Hara, Maja Artandi, Jessica Fitzpatrick, Linda Barman, Ziyuan He, Rajan Puri, Manisha Desai, and Richard Wittman
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0301 basic medicine ,Longitudinal study ,Allergy ,medicine.medical_specialty ,Multivariate analysis ,Coronavirus disease 2019 (COVID-19) ,Immunology ,Disease ,Asymptomatic ,SARS‐CoV‐2 ,03 medical and health sciences ,COVID-19 Testing ,0302 clinical medicine ,COVID‐19 ,Internal medicine ,medicine ,Humans ,Immunology and Allergy ,Risk factor ,Respiratory system ,Retrospective Studies ,Asthma ,SARS-CoV-2 ,business.industry ,COVID-19 ,Original Articles ,asthma ,Eosinophil ,medicine.disease ,Phenotype ,030104 developmental biology ,medicine.anatomical_structure ,030228 respiratory system ,Original Article ,eosinophils ,medicine.symptom ,business - Abstract
Background It is unclear whether asthma and its allergic phenotype are risk factors for hospitalization or severe disease from SARS‐CoV‐2. Methods All patients over 28 days old testing positive for SARS‐CoV‐2 between March 1 and September 30, 2020, were retrospectively identified and characterized through electronic analysis at Stanford. A sub‐cohort was followed prospectively to evaluate long‐term COVID‐19 symptoms. Results 168,190 patients underwent SARS‐CoV‐2 testing, and 6,976 (4.15%) tested positive. In a multivariate analysis, asthma was not an independent risk factor for hospitalization (OR 1.12 [95% CI 0.86, 1.45], p = .40). Among SARS‐CoV‐2‐positive asthmatics, allergic asthma lowered the risk of hospitalization and had a protective effect compared with non‐allergic asthma (OR 0.52 [0.28, 0.91], p = .026); there was no association between baseline medication use as characterized by GINA and hospitalization risk. Patients with severe COVID‐19 disease had lower eosinophil levels during hospitalization compared with patients with mild or asymptomatic disease, independent of asthma status (p = .0014). In a patient sub‐cohort followed longitudinally, asthmatics and non‐asthmatics had similar time to resolution of COVID‐19 symptoms, particularly lower respiratory symptoms. Conclusions Asthma is not a risk factor for more severe COVID‐19 disease. Allergic asthmatics were half as likely to be hospitalized with COVID‐19 compared with non‐allergic asthmatics. Lower levels of eosinophil counts (allergic biomarkers) were associated with a more severe COVID‐19 disease trajectory. Recovery was similar among asthmatics and non‐asthmatics with over 50% of patients reporting ongoing lower respiratory symptoms 3 months post‐infection., Asthma is not a risk factor for more severe COVID‐19 disease. Allergic asthmatics are half as likely to be hospitalized compared with non‐allergic asthmatics and lower levels of eosinophil counts (allergic biomarkers) are associated with a more severe COVID‐19 disease trajectory. Recovery is similar among asthmatics and non‐asthmatics.
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- 2021
8. Enhanced thermal conductivity and insulation properties of mica tape with BN coating via electrostatic spraying technology
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Yu Feng, Ziyuan He, Zhijie Yang, Wenxin Tang, Qingguo Chi, and Qingguo Chen
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Polymers and Plastics ,Materials Chemistry ,General Chemistry ,Surfaces, Coatings and Films - Published
- 2022
9. CyAnno: a semi-automated approach for cell type annotation of mass cytometry datasets
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Monali Manohar, Kari C. Nadeau, Ziyuan He, Abhinav Kaushik, Manisha Desai, Sandra Andorf, and Diane M. Dunham
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Statistics and Probability ,Cell type ,Computer science ,Cell ,computer.software_genre ,Biochemistry ,03 medical and health sciences ,Annotation ,0302 clinical medicine ,medicine ,Mass cytometry ,Molecular Biology ,030304 developmental biology ,computer.programming_language ,Supplementary data ,0303 health sciences ,Training set ,business.industry ,Mixed cell ,Pattern recognition ,Python (programming language) ,Original Papers ,Computer Science Applications ,Computational Mathematics ,medicine.anatomical_structure ,Computational Theory and Mathematics ,030220 oncology & carcinogenesis ,Artificial intelligence ,Data mining ,business ,computer ,Cytometry - Abstract
Motivation For immune system monitoring in large-scale studies at the single-cell resolution using CyTOF, (semi-)automated computational methods are applied for annotating live cells of mixed cell types. Here, we show that the live cell pool can be highly enriched with undefined heterogeneous cells, i.e. ‘ungated’ cells, and that current semi-automated approaches ignore their modeling resulting in misclassified annotations. Result We introduce ‘CyAnno’, a novel semi-automated approach for deconvoluting the unlabeled cytometry dataset based on a machine learning framework utilizing manually gated training data that allows the integrative modeling of ‘gated’ cell types and the ‘ungated’ cells. By applying this framework on several CyTOF datasets, we demonstrated that including the ‘ungated’ cells can lead to a significant increase in the precision of the ‘gated’ cell types prediction. CyAnno can be used to identify even a single cell type, including rare cells, with higher efficacy than current state-of-the-art semi-automated approaches. Availability and implementation The CyAnno is available as a python script with a user-manual and sample dataset at https://github.com/abbioinfo/CyAnno. Supplementary information Supplementary data are available at Bioinformatics online.
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- 2021
10. Food Allergies
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Kari C. Nadeau, Wenming Zhang, Christopher M. Warren, Ziyuan He, Stéphanie Lejeune, Xiaorui Han, and James Walter Krempski
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medicine.medical_specialty ,Allergy ,business.industry ,Public health ,Systems biology ,digestive, oral, and skin physiology ,Immunology ,Translational research ,medicine.disease ,Immune tolerance ,Allergic sensitization ,Food allergy ,medicine ,Immunology and Allergy ,Intensive care medicine ,business ,Psychosocial - Abstract
Food allergies have been rising in prevalence since the 1990s, imposing substantial physical, psychosocial, and economic burdens on affected patients and their families. Until recently, the only therapy for food allergy was strict avoidance of the allergenic food. Recent advances in translational studies, however, have led to insights into allergic sensitization and tolerance. This article provides an overview of cutting-edge research into food allergy and immune tolerance mechanisms utilizing mouse models, human studies, and systems biology approaches. This research is being translated and implemented in the clinical setting to improve diagnosis and reduce food allergy's public health burden.
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- 2021
11. An Excitation-DRR Control Approach for Wide-Beam Power Gain Pattern Synthesis
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Shiwen Lei, Wei Yang, Zhipeng Lin, Ziyuan He, Haoquan Hu, Zhiqin Zhao, and Yongfang Bao
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Control and Systems Engineering ,Signal Processing ,Computer Vision and Pattern Recognition ,Electrical and Electronic Engineering ,Software - Published
- 2023
12. Comorbidity defines asthmatic patients' risk of COVID-19 hospitalization: A global perspective
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Chrysanthi Skevaki, R. Sharon Chinthrajah, Daria Fomina, Gernot Rohde, Shu Cao, Ziyuan He, Sofia Serdotetskova, Christian Seidemann, Achim Grünewaldt, Abisha Vengadeswaran, Min Xie, Antonina Karsonova, Alexander Karaulov, Kari C. Nadeau, Ho-Ryun Chung, and Harald Renz
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Immunology ,Immunology and Allergy - Abstract
The global epidemiology of asthma among patients with coronavirus disease 2019 (COVID-19) presents striking geographic differences, defining prevalence zones of high and low co-occurrence of asthma and COVID-19.We aimed to compare asthma prevalence among hospitalized patients with COVID-19 in major global hubs across the world by applying common inclusion criteria and definitions.We built a network of 6 academic hospitals in Stanford (Stanford University)/the United States; Frankfurt (Goethe University), Giessen (Justus Liebig University), and Marburg (Philipps University)/Germany; and Moscow (Clinical Hospital 52 in collaboration with Sechenov University)/Russia. We collected clinical and laboratory data for patients hospitalized due to COVID-19.Asthmatic individuals were overrepresented among hospitalized patients with COVID-19 in Stanford and underrepresented in Moscow and Germany as compared with their prevalence among adults in the local community. Asthma prevalence was similar among patients hospitalized in an intensive care unit and patients hospitalized in other than an intensive care unit, which implied that the risk for development of severe COVID-19 was not higher among asthmatic patients. The numbers of males and comorbidities were higher among patients with COVID-19 in the Stanford cohort, and the most frequent comorbidities among these patients with asthma were other chronic inflammatory airway disorders such as chronic obstructive pulmonary disease.The observed disparity in COVID-19-associated risk among asthmatic patients across countries and continents is connected to the varying prevalence of underlying comorbidities, particularly chronic obstructive pulmonary disease.
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- 2022
13. Comorbidity defines risk of asthmatics for COVID-19 hospitalization: a global perspective
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Chrysanthi Skevaki, Sharon Chinthrajah, Daria Fomina, Gernot Rohde, Shu Cao, Ziyuan He, Sofia Serdotetskova, Christian Seidemann, Achim Grünewaldt, Abisha Vengadeswaran, Min Xie, Antonina Karsonova, Alexander Karaulov, Kari Nadeau, Ho-Ryun Chung, and Harald Renz
- Abstract
Background: The global epidemiology of asthma among COVID-19 patients presents striking geographic differences defining high and low [asthma and COVID-19] co-occurrence prevalence zones (1). The objective of the present study was to compare asthma prevalence among hospitalized COVID-19 patients in major global hubs across the world with the application of common inclusion criteria and definitions. Methods: We built a network of six academic hospitals in Stanford (Stanford University)/USA, Frankfurt (Goethe University), Giessen (Justus Liebig University) and Marburg (Philipps University)/Germany, and Moscow (Clinical Hospital 52 in collaboration with Sechenov University)/Russia. We collected clinical and laboratory data for patients hospitalized due to COVID-19. Comorbidities reported were based on the 2020 International Classification of Diseases-10th Revision codes. Results: Asthmatics were overrepresented among hospitalized COVID-19 patients in Stanford and underrepresented in Moscow and Germany as compared to the prevalence among adults in the local community. Asthma prevalence was similar among ICU and hospital non-ICU patients, which implied that the risk for developing severe COVID-19 was not higher among asthmatics. The number of males and comorbidities was higher among COVID-19 patients in the Stanford cohort, and the most frequent comorbidities among these asthma patients were other chronic inflammatory airway disorders such as chronic obstructive pulmonary disease (COPD). Conclusion: Observed disparity in COVID-19-associated risk among asthmatics across countries and continents is connected to varying prevalence of underlying comorbidities, particularly COPD. Public health policies in the future will need to consider comorbidities with an emphasis on COPD for prioritization of vaccination and preemptive treatment.
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- 2022
14. A Novel Sowing Operation Parameter Learning Optimization Method Using Dataset of Sown Seeds with Similar Properties
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Hongmei Xia, Yuanjie Liu, Kaidong Zhao, Linhuan Jiang, Ziyuan He, and Song Gu
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History ,Polymers and Plastics ,Forestry ,Horticulture ,Business and International Management ,Agronomy and Crop Science ,Industrial and Manufacturing Engineering ,Computer Science Applications - Published
- 2022
15. Declining neutrophil production despite increasing G-CSF levels is associated with chronic inflammation in elderly rhesus macaques
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Ziyuan He, Namita Rout, Nadia Slisarenko, Marcelo J. Kuroda, Marissa Fahlberg, Elizabeth S. Didier, and Naofumi Takahashi
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0301 basic medicine ,Aging ,Neutrophils ,medicine.medical_treatment ,0302 clinical medicine ,Granulocyte Colony-Stimulating Factor ,Immunology and Allergy ,Age Factors ,Hematology ,Editorial Commentary ,Haematopoiesis ,Cytokine ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Myeloperoxidase ,Cytokines ,Disease Susceptibility ,medicine.symptom ,Inflammation Mediators ,1.1 Normal biological development and functioning ,education ,Immunology ,Inflammation ,macromolecular substances ,Biology ,Article ,Proinflammatory cytokine ,03 medical and health sciences ,derived suppressor cells ,Clinical Research ,Underpinning research ,medicine ,Humans ,Animals ,Aged ,SARS-CoV-2 ,Myeloid-Derived Suppressor Cells ,Inflammatory and immune system ,myeloid‐ ,Editorials ,COVID-19 ,Cell Biology ,Macaca mulatta ,hematopoiesis ,Hematopoiesis ,polymorphonuclear cells ,030104 developmental biology ,Good Health and Well Being ,Chronic Disease ,Myeloid-derived Suppressor Cell ,biology.protein ,Bone marrow ,Biochemistry and Cell Biology ,Homeostasis - Abstract
Aging is characterized by a loss of bone marrow hematopoietic tissue, systemic chronic inflammation, and higher susceptibility to infectious and noninfectious diseases. We previously reported the tightly regulated kinetics and massive daily production of neutrophils during homeostasis in adult rhesus macaques aged 3 to 19 yr (equivalent to approximately 10 to 70 yr of age in humans). In the current study, we observed an earlier release of recently dividing neutrophils from bone marrow and greater in-group variability of neutrophil kinetics based on in vivo BrdU labeling in a group of older rhesus macaques of 20–26 yr of age. Comparing neutrophil numbers and circulating cytokine levels in rhesus macaques spanning 2 to 26 yr of age, we found a negative correlation between age and blood neutrophil counts and a positive correlation between age and plasma G-CSF levels. Hierarchic clustering analysis also identified strong associations between G-CSF with the proinflammatory cytokines, IL-1β and MIP-1α. Furthermore, neutrophils from older macaques expressed less myeloperoxidase and comprised higher frequencies of polymorphonuclear myeloid-derived suppressor cells (PMN-MDSCs) compared to the young adult macaques. In summary, we observed an earlier release from bone marrow and a reduced production of neutrophils despite the increased levels of plasma G-CSF, especially in the elderly rhesus macaques. This lower neutrophil production capacity associated with increased production of proinflammatory cytokines as well as an earlier release of less mature neutrophils and PMN-MDSCs may contribute to the chronic inflammation and greater susceptibility to infectious and noninfectious diseases during aging.
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- 2021
16. BEAM SCANNING MICROSTRIP LEAKY WAVE ANTENNA DESIGN BASED ON LIQUID CRYSTAL
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Ziyuan He, Chunyang Pan, and Yaling Liu
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Materials science ,Optics ,Liquid crystal ,business.industry ,Leaky wave antenna ,Beam scanning ,business ,Microstrip ,Electronic, Optical and Magnetic Materials - Published
- 2019
17. A Supramolecular Hydrogel Based on Copolymers of Acrylic Acid and Maleic Anhydride Derivatives with Terpyridine Motifs
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Zheng, Chi, Chenchen, Ma, Ziyuan, He, Zihan, Ma, Xuegang, Chen, and Zhaoge, Huang
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Polymers and Plastics ,supramolecular hydrogel ,acrylic acid ,maleic anhydride ,terpyridine ,coordination interaction ,General Chemistry - Abstract
A kind of terpyridine derivative (NH2-Tpy) in which the amino was incorporated by a short alkyl chain was synthesized. Through grafting of terpyridine units into the hydrophilic copolymers of maleic anhydride and acrylic acid PAAMa via the reaction of the amino groups in NH2-Tpy and the maleic anhydride units, a series of gelator polymers—P1, P2, and P3—containing different contents of terpyridine units was synthesized. Under coordination of Ni2+ and terpyridine ligands in linear polymers, the supramolecular hydrogels H1, H2, and H3 with different cross-linking degrees were prepared. The linear polymers P1–P3 had a strong absorption peak at about 290 nm in the UV-vis spectra which was attributed to π–π* transition, and there was a new peak at about 335 nm led by the metal-to-ligands charge transfer (MLCT) when coordinated with Ni2+ ions. According to the rheological behaviors, the storage modulus (G′) was larger than the loss modulus (G′′). These hydrogels showed typical gel-like characteristics when the terpyridine content of the hydrogels exceeded 10%, and the hydrogels showed liquid-like characteristics when the terpyridine content of the hydrogels was less than 7%. The results of the micromorphological investigation of the xerogels from SEM illustrated the metal–terpyridine coordination cross-linking could have an important influence on the microstructures of the resulting hydrogels. Furthermore, these hydrogels based on supramolecular cross-links exhibited reversible solution–gel transition at different environmental temperatures. At the same time, the equilibrium swelling of the supramolecular hydrogels was 8.0–12.3 g/g, which increased with the decrease in the content of the terpyridine units in the resulting hydrogels.
- Published
- 2022
18. Low-loss Reflectarray Element with Continuously Tunable Reflection Phase
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Qianqian Shao, Ziyuan He, Jing Tian, Bixiao Jiang, Jiuzhou Gao, and Xianlu Zeng
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- 2021
19. Food Allergies: An Example of Translational Research
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James Walter, Krempski, Christopher, Warren, Xiaorui, Han, Wenming, Zhang, Ziyuan, He, Stéphanie, Lejeune, and Kari, Nadeau
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Translational Research, Biomedical ,Mice ,Immune Tolerance ,Prevalence ,Animals ,Humans ,Food Hypersensitivity - Abstract
Food allergies have been rising in prevalence since the 1990s, imposing substantial physical, psychosocial, and economic burdens on affected patients and their families. Until recently, the only therapy for food allergy was strict avoidance of the allergenic food. Recent advances in translational studies, however, have led to insights into allergic sensitization and tolerance. This article provides an overview of cutting-edge research into food allergy and immune tolerance mechanisms utilizing mouse models, human studies, and systems biology approaches. This research is being translated and implemented in the clinical setting to improve diagnosis and reduce food allergy's public health burden.
- Published
- 2021
20. Asthma as a predictor of more severe outcomes in COVID-19 infection
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Kari C. Nadeau, Shirley Y. Jiang, William Collins, R. Sharon Chinthrajah, Lauren E. Eggert, Shu Cao, Gopal Krishna R. Dhondalay, Sayantani B. Sindher, and Ziyuan He
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2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Immunology ,Medicine ,Immunology and Allergy ,business ,medicine.disease ,Article ,Asthma - Published
- 2021
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- View/download PDF
21. sj-pdf-1-ctj-10.1177_1740774520988298 – Supplemental material for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape
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Hedlin, Haley, Garcia, Ariadna, Yingjie Weng, Ziyuan He, Sundaram, Vandana, Bunning, Bryan, Vidhya Balasubramanian, Cunanan, Kristen, Kapphahn, Kristopher, Gummidipundi, Santosh, Purington, Natasha, Boulos, Mary, and Desai, Manisha
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FOS: Clinical medicine ,160807 Sociological Methodology and Research Methods ,111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified ,FOS: Sociology - Abstract
Supplemental material, sj-pdf-1-ctj-10.1177_1740774520988298 for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape by Haley Hedlin, Ariadna Garcia, Yingjie Weng, Ziyuan He, Vandana Sundaram, Bryan Bunning, Vidhya Balasubramanian, Kristen Cunanan, Kristopher Kapphahn, Santosh Gummidipundi, Natasha Purington, Mary Boulos and Manisha Desai in Clinical Trials
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- 2021
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22. Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape
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Haley Hedlin, Natasha Purington, Vidhya Balasubramanian, Mary Boulos, Ziyuan He, Manisha Desai, Yingjie Weng, Santosh Gummidipundi, Ariadna Garcia, Bryan J. Bunning, Kristopher Kapphahn, Vandana Sundaram, and Kristen M. Cunanan
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Pharmacology ,Clinical Trials as Topic ,Process management ,Coronavirus disease 2019 (COVID-19) ,Computer science ,Endpoint Determination ,SARS-CoV-2 ,Psychological intervention ,COVID-19 ,efficient infrastructure ,pandemic ,Platform protocol ,core protocol ,master protocol ,Data & Safety Monitoring Board ,Data Coordinating Center ,General Medicine ,Article ,Clinical trial ,03 medical and health sciences ,0302 clinical medicine ,Clinical Trial Protocols as Topic ,030220 oncology & carcinogenesis ,Component (UML) ,Pandemic ,Key (cryptography) ,Humans ,030212 general & internal medicine ,Clinical Trials Data Monitoring Committees ,Pandemics - Abstract
Background: Clinical trials, conducted efficiently and with the utmost integrity, are a key component in identifying effective vaccines, therapies, and other interventions urgently needed to solve the COVID-19 crisis. Yet launching and implementing trials with the rigor necessary to produce convincing results is a complicated and time-consuming process. Balancing rigor and efficiency involves relying on designs that employ flexible features to respond to a fast-changing landscape, measuring valid endpoints that result in translational actions and disseminating findings in a timely manner. We describe the challenges involved in creating infrastructure with potential utility for shared learning. Methods: We have established a shared infrastructure that borrows strength across multiple trials. The infrastructure includes an endpoint registry to aid in selecting appropriate endpoints, a registry to facilitate establishing a Data & Safety Monitoring Board, common data collection instruments, a COVID-19 dedicated design and analysis team, and a pragmatic platform protocol, among other elements. Results: The authors have relied on the shared infrastructure for six clinical trials for which they serve as the Data Coordinating Center and have a design and analysis team comprising 15 members who are dedicated to COVID-19. The authors established a pragmatic platform to simultaneously investigate multiple treatments for the outpatient with adaptive features to add or drop treatment arms. Conclusion: The shared infrastructure provides appealing opportunities to evaluate disease in a more robust manner with fewer resources and is especially valued during a pandemic where efficiency in time and resources is crucial. The most important element of the shared infrastructure is the pragmatic platform. While it may be the most challenging of the elements to establish, it may provide the greatest benefit to both patients and researchers.
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- 2021
23. sj-pdf-2-ctj-10.1177_1740774520988298 – Supplemental material for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape
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Hedlin, Haley, Garcia, Ariadna, Yingjie Weng, Ziyuan He, Sundaram, Vandana, Bunning, Bryan, Vidhya Balasubramanian, Cunanan, Kristen, Kapphahn, Kristopher, Gummidipundi, Santosh, Purington, Natasha, Boulos, Mary, and Desai, Manisha
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FOS: Clinical medicine ,160807 Sociological Methodology and Research Methods ,111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified ,FOS: Sociology - Abstract
Supplemental material, sj-pdf-2-ctj-10.1177_1740774520988298 for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape by Haley Hedlin, Ariadna Garcia, Yingjie Weng, Ziyuan He, Vandana Sundaram, Bryan Bunning, Vidhya Balasubramanian, Kristen Cunanan, Kristopher Kapphahn, Santosh Gummidipundi, Natasha Purington, Mary Boulos and Manisha Desai in Clinical Trials
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- 2021
- Full Text
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24. sj-pdf-2-ctj-10.1177_1740774520988298 – Supplemental material for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape
- Author
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Hedlin, Haley, Garcia, Ariadna, Yingjie Weng, Ziyuan He, Sundaram, Vandana, Bunning, Bryan, Vidhya Balasubramanian, Cunanan, Kristen, Kapphahn, Kristopher, Gummidipundi, Santosh, Purington, Natasha, Boulos, Mary, and Desai, Manisha
- Subjects
FOS: Clinical medicine ,160807 Sociological Methodology and Research Methods ,111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified ,FOS: Sociology - Abstract
Supplemental material, sj-pdf-2-ctj-10.1177_1740774520988298 for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape by Haley Hedlin, Ariadna Garcia, Yingjie Weng, Ziyuan He, Vandana Sundaram, Bryan Bunning, Vidhya Balasubramanian, Kristen Cunanan, Kristopher Kapphahn, Santosh Gummidipundi, Natasha Purington, Mary Boulos and Manisha Desai in Clinical Trials
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- 2021
- Full Text
- View/download PDF
25. sj-pdf-1-ctj-10.1177_1740774520988298 – Supplemental material for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape
- Author
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Hedlin, Haley, Garcia, Ariadna, Yingjie Weng, Ziyuan He, Sundaram, Vandana, Bunning, Bryan, Vidhya Balasubramanian, Cunanan, Kristen, Kapphahn, Kristopher, Gummidipundi, Santosh, Purington, Natasha, Boulos, Mary, and Desai, Manisha
- Subjects
FOS: Clinical medicine ,160807 Sociological Methodology and Research Methods ,111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified ,FOS: Sociology - Abstract
Supplemental material, sj-pdf-1-ctj-10.1177_1740774520988298 for Clinical trials in a COVID-19 pandemic: Shared infrastructure for continuous learning in a rapidly changing landscape by Haley Hedlin, Ariadna Garcia, Yingjie Weng, Ziyuan He, Vandana Sundaram, Bryan Bunning, Vidhya Balasubramanian, Kristen Cunanan, Kristopher Kapphahn, Santosh Gummidipundi, Natasha Purington, Mary Boulos and Manisha Desai in Clinical Trials
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- 2021
- Full Text
- View/download PDF
26. Fecal microbiome and metabolome differ in healthy and food-allergic twins
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Ziyuan He, Riyue Bao, Cathryn R. Nagler, Lauren A. Hesser, Kari C. Nadeau, and Xiaoying Zhou
- Subjects
Adult ,Male ,Allergy ,Twins ,Disease ,Veillonellaceae ,Gut flora ,Feces ,Food allergy ,RNA, Ribosomal, 16S ,Ruminococcus ,medicine ,Metabolome ,Humans ,Microbiome ,Child ,Aged ,biology ,Bacteria ,Microbiota ,Infant ,General Medicine ,Middle Aged ,biology.organism_classification ,medicine.disease ,RNA, Bacterial ,Child, Preschool ,Immunology ,Commentary ,Dysbiosis ,Biomarker (medicine) ,Female ,Clinical Medicine ,Food Hypersensitivity - Abstract
BACKGROUND: There has been a striking generational increase in the prevalence of food allergies. We have proposed that this increase can be explained, in part, by alterations in the commensal microbiome. METHODS: To identify bacterial signatures and metabolic pathways that may influence the expression of this disease, we collected fecal samples from a unique, well-controlled cohort of twins concordant or discordant for food allergy. Samples were analyzed by integrating 16S rRNA gene amplicon sequencing and liquid chromatography–tandem mass spectrometry metabolite profiling. RESULTS: A bacterial signature of 64 operational taxonomic units (OTUs) distinguished healthy from allergic twins; the OTUs enriched in the healthy twins were largely taxa from the Clostridia class. We detected significant enrichment in distinct metabolite pathways in each group. The enrichment of diacylglycerol in healthy twins is of particular interest for its potential as a readily measurable fecal biomarker of health. In addition, an integrated microbial-metabolomic analysis identified a significant association between healthy twins and Phascolarctobacterium faecium and Ruminococcus bromii, suggesting new possibilities for the development of live microbiome-modulating biotherapeutics. CONCLUSION: Twin pairs exhibited significant differences in their fecal microbiomes and metabolomes through adulthood, suggesting that the gut microbiota may play a protective role in patients with food allergies beyond the infant stage. TRIAL REGISTRATION: Participants in this study were recruited as part of an observational study (ClinicalTrials.gov NCT01613885) at multiple sites from 2014 to 2018. FUNDING: This work was supported by the Sunshine Charitable Foundation; the Moss Family Foundation; the National Institute of Allergy and Infectious Diseases (NIAID) (R56AI134923 and R01AI 140134); the Sean N. Parker Center for Allergy and Asthma Research; the National Heart, Lung, and Blood Institute (R01 HL 118612); the Orsak family; the Kepner family; and the Stanford Institute for Immunity, Transplant and Infection.
- Published
- 2020
27. Author response for 'Identification of cross‐reactive allergens in cashew‐ and pistachio‐allergic children during oral immunotherapy'
- Author
-
Rosemarie H. DeKruyff, Stephen J. Galli, Sandra Andorf, Kari C. Nadeau, R. Sharon Chinthrajah, Shu-Chen Lyu, Prachi Dongre, Ziyuan He, and Monali Manohar
- Subjects
Oral immunotherapy ,business.industry ,Immunology ,Medicine ,Identification (biology) ,business - Published
- 2020
28. Identification of cross-reactive allergens in cashew- and pistachio-allergic children during oral immunotherapy
- Author
-
Monali Manohar, R. Sharon Chinthrajah, Kari C. Nadeau, Stephen J. Galli, Rosemarie H. DeKruyff, Ziyuan He, Sandra Andorf, Shu-Chen Lyu, and Prachi Dongre
- Subjects
Oral immunotherapy ,business.industry ,Extramural ,Immunology ,MEDLINE ,Allergens ,Article ,Pediatrics, Perinatology and Child Health ,Pistacia ,Immunology and Allergy ,Medicine ,Humans ,Nuts ,Identification (biology) ,Anacardium ,Immunotherapy ,Nut Hypersensitivity ,business ,Child ,Plant Proteins - Published
- 2020
29. Mass Cytometry Reveals Immune Signatures Associated With Desensitization Through Multi-Food Oral Immunotherapy
- Author
-
Shu-Chen Lyu, Sharon Chinthrajah, Sandra Andorf, Monali Manohar, Xiaoying Zhou, Kari C. Nadeau, Diane M. Dunham, and Ziyuan He
- Subjects
Immune system ,Oral immunotherapy ,business.industry ,medicine.medical_treatment ,Immunology ,Immunology and Allergy ,Medicine ,Mass cytometry ,business ,Desensitization (medicine) - Published
- 2021
30. A Novel Frequency Reconfigurable Microstrip Antenna Based on Liquid Crystal
- Author
-
Yaling Liu, Ziyuan He, and Chunyang Pan
- Subjects
Reconfigurable antenna ,Materials science ,business.industry ,020208 electrical & electronic engineering ,Astrophysics::Instrumentation and Methods for Astrophysics ,Process (computing) ,020206 networking & telecommunications ,02 engineering and technology ,Dielectric ,Substrate (electronics) ,Communications system ,law.invention ,Microstrip antenna ,Liquid crystal ,law ,0202 electrical engineering, electronic engineering, information engineering ,Optoelectronics ,Antenna (radio) ,business ,Computer Science::Information Theory - Abstract
This paper proposes a novel frequency reconfigurable antenna based on the liquid crystal material because of the dielectric anisotropy. The antenna applies double layer structure so that liquid crystal can be easily injected on the second substrate. Experimental results show that when changing the effective dielectric constant of the liquid crystal, the center resonant frequency of antenna can be tuned continuously from 6.02 GHz to 5.91 GHz meaning that this antenna achieves a frequency tunability about 1.9%. Besides, in the whole adjustment process, the antenna's matching characteristics remains good. Thus, this kind of antennas are very feasible to be applied in the reconfigurable communication system. Furthermore, antenna designed in this article separates RF circuit from DC feed circuit by using a simple way, which makes the design efficient and more convenient.
- Published
- 2018
31. Rapid Turnover and High Production Rate of Myeloid Cells in Adult Rhesus Macaques with Compensations during Aging
- Author
-
Woong-Ki Kim, Ziyuan He, Carolina Allers, Nursarat Ahmed, Marcelo J. Kuroda, Chie Sugimoto, Elizabeth S. Didier, and Hideki Fujioka
- Subjects
0301 basic medicine ,Male ,medicine.medical_specialty ,Aging ,Myeloid ,Neutrophils ,1.1 Normal biological development and functioning ,CD14 ,Immunology ,Bone Marrow Cells ,CD16 ,Monocytes ,Article ,Flow cytometry ,03 medical and health sciences ,0302 clinical medicine ,Underpinning research ,Internal medicine ,medicine ,Immunology and Allergy ,Animals ,Homeostasis ,Myeloid Cells ,Hematology ,medicine.diagnostic_test ,Chemistry ,Prevention ,Stem Cell Research ,Macaca mulatta ,Basophils ,Eosinophils ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,Stem Cell Research - Nonembryonic - Non-Human ,Myelopoiesis ,Bone marrow ,030215 immunology ,Half-Life - Abstract
Neutrophils, basophils, and monocytes are continuously produced in bone marrow via myelopoiesis, circulate in blood, and are eventually removed from circulation to maintain homeostasis. To quantitate the kinetics of myeloid cell movement during homeostasis, we applied 5-bromo-2′-deoxyuridine pulse labeling in healthy rhesus macaques (Macaca mulatta) followed by hematology and flow cytometry analyses. Results were applied to a mathematical model, and the blood circulating half-life and daily production, respectively, of each cell type from macaques aged 5–10 y old were calculated for neutrophils (1.63 ± 0.16 d, 1.42 × 109 cells/l/d), basophils (1.78 ± 0.30 d, 5.89 × 106 cells/l/d), and CD14+CD16− classical monocytes (1.01 ± 0.15 d, 3.09 × 108 cells/l/d). Classical monocytes were released into the blood circulation as early as 1 d after dividing, whereas neutrophils remained in bone marrow 4–5 d before being released. Among granulocytes, neutrophils and basophils exhibited distinct kinetics in bone marrow maturation time and blood circulation. With increasing chronological age, there was a significant decrease in daily production of neutrophils and basophils, but the half-life of these granulocytes remained unchanged between 3 and 19 y of age. In contrast, daily production of classical monocytes remained stable through 19 y of age but exhibited a significant decline in half-life. These results demonstrated relatively short half-lives and continuous replenishment of neutrophils, basophils, and classical monocytes during homeostasis in adult rhesus macaques with compensations observed during increasing chronological age.
- Published
- 2018
32. Dysregulation of G-CSF and neutrophil production is associated with chronic inflammation in elderly rhesus macaques
- Author
-
Ziyuan He, Naofumi Takahashi, Marissa Fahlberg, Nadia Slisarenko, Elizabeth Didier, and Marcelo Kuroda
- Subjects
Immunology ,Immunology and Allergy - Abstract
Aging is characterized with a loss of hematopoietic tissue in bone marrow, systemic chronic inflammation, and higher susceptibility to infectious diseases. We previously showed the tightly regulated kinetics and massive daily production of neutrophils during homeostasis in rhesus macaques aged 3 to 19 years old. Here we extended that study to further investigate the effect of aging on kinetics and production of neutrophils in more elderly rhesus macaques. We observed a neutrophil kinetics shift and higher in-group variability in rhesus macaques above 20 years old (equivalent to 70 years or more in humans) by in vivo BrdU pulse-chase labeling. In a cross-sectional study, we also measured complete blood cell counts and plasma cytokine levels from a group of 126 outdoor-housed captive Indian-ancestry rhesus macaques between 2 to 23 years old and found that aging negatively correlated with neutrophil counts and positively correlated with plasma G-CSF levels. Hierarchical clustering analysis suggested that G-CSF was strongly associated with pro-inflammatory cytokines IL-1b and MIP-1a. In elderly rhesus macaques, neutrophils expressed less myeloperoxidase and there was a higher frequency of PMN-MDSCs compared to the young adult macaques. In summary, there appears to be a dysregulated feedback mechanism wherein increased levels of G-CSF failed to restore neutrophil production in elderly rhesus macaques that was associated with induced production of pro-inflammatory cytokines and earlier release of less mature neutrophils and PMN-MDSCs. Together, these findings may contribute to the understanding of the chronic inflammation and greater susceptibility to infectious diseases in the elderly.
- Published
- 2019
33. Resolving manifold ambiguities for direction‐of‐arrival estimation of sparse array using semi‐circular substrates
- Author
-
Jiazhou Liu, Zhiqin Zhao, Qing Huo Liu, Ziyuan He, and Zaiping Nie
- Subjects
Linearity ,Direction of arrival ,law.invention ,Sparse array ,Feature (computer vision) ,law ,Electronic engineering ,Electrical and Electronic Engineering ,Linear combination ,Spurious relationship ,Algorithm ,Manifold (fluid mechanics) ,Resolution (algebra) ,Mathematics - Abstract
Sparse linear array has some advantages over uniform linear array in some applications. However, it is well known that sparse array always suffers from manifold ambiguity, which has significant influence on direction-of-arrival (DOA) estimation and resolution. In this study, a new method based on the multiple signal classification (MUSIC) for resolving manifold ambiguities of uncorrelated sources by using semi-circular substrate is proposed for DOA estimation of sparse array. Spurious MUSIC peak spectrums are generated because of a linear combination of the steering vectors of true DOAs. The main idea of the proposed method is to setup one or several semi-circular medium substrates at the front of some elements. The phases of these elements are changed through the refractive index and the radii of those semi-circular substrates. This treatment breaks down the previous linearity of the steering vectors for the array without adding the substrates. Thus, true DOA peaks can be discriminated according to this feature. Simulation results show good performance of the proposed method. Trivial and non-trivial ambiguities are efficiently resolved.
- Published
- 2013
34. Resolving Manifold Ambiguities for Sparse Array Using Planar Substrates
- Author
-
Zhiqin Zhao, Qing Huo Liu, Ziyuan He, Ping Ma, and Zaiping Nie
- Subjects
Planar ,Sparse array ,Feature (computer vision) ,Speech recognition ,Linearity ,Direction of arrival ,Electrical and Electronic Engineering ,Linear combination ,Spurious relationship ,Algorithm ,Manifold ,Mathematics - Abstract
Aiming to resolve the manifold ambiguities for sparse arrays, a method based on the multiple signal classification (MUSIC) algorithm using planar substrate is proposed. The main reason for spurious MUSIC spectrum is that the steering vector of spurious direction of arrival (DOA) is a linear combination of the steering vectors of true DOAs. The main idea of the proposed method is to add some planar substrates at the front-ends of the elements of an array. The refractive indices and thicknesses of the substrates can be different from each other. This treatment breaks down the linearity which induces the ambiguity of a sparse array. Because the equivalent positions of the elements change for different DOAs after adding the substrates on the array, the spurious peaks will disappear or not overlap on the old peaks. Nevertheless the peaks of the true directions will remain. The spurious peaks can be discriminated according to this feature. Simulation results demonstrate the effectiveness and the feasibility of the method. Meanwhile the simulation results also show that the proposed method can partially resolve the trivial ambiguities even if the true DOA and the spurious DOA are confined to (0°, 180°).
- Published
- 2012
35. Method of solving ambiguity for sparse array via power estimation based on MUSIC algorithm
- Author
-
Jian Wang, Zaiping Nie, Ziyuan He, Qing Huo Liu, Pu Tang, and Zhiqin Zhao
- Subjects
Mathematical optimization ,Statistics::Applications ,media_common.quotation_subject ,Function (mathematics) ,Ambiguity ,Manifold ,Statistics::Computation ,Power (physics) ,Sparse array ,Control and Systems Engineering ,Broyden–Fletcher–Goldfarb–Shanno algorithm ,Signal Processing ,Multiple signal classification ,Computer Vision and Pattern Recognition ,Electrical and Electronic Engineering ,Spurious relationship ,Algorithm ,Software ,Computer Science::Information Theory ,Mathematics ,media_common - Abstract
Sparse linear arrays provide better performance than the filled linear arrays in terms of direction estimation and resolution with reduced size and low cost. However, they are subject to manifold ambiguity. A method based on the Multiple Signal Classification (MUSIC) algorithm to solve the manifold ambiguity of uncorrelated sources for sparse array is proposed in this paper. The method consists of two steps. The first step is to obtain all the directions of arrivals (DOAs), including true and spurious DOAs, using traditional MUSIC. The second step is to estimate the power values of the all DOAs by substituting all the DOAs to a cost function. The well-known Davidson Fletcher Powell (DFP) and Broyden Fletcher Goldfarb Shanno (BFGS) algorithms are used to estimate the power values. The power values of spurious DOAs are very small or tend to zero compared with the values of the true DOAs. The true DOAs are then discriminated easily from the spurious DOAs with the power values. Simulation results demonstrate the effectiveness and the feasibility of the method.
- Published
- 2012
36. Comments on 'Waveform Optimization for Transmit Beamforming With MIMO Radar Antenna Array'
- Author
-
Ziyuan He and Wei‐Quan Zhang
- Subjects
Beamforming ,020301 aerospace & aeronautics ,Computer science ,MIMO ,Radiant energy ,020206 networking & telecommunications ,02 engineering and technology ,Mimo radar ,law.invention ,Antenna array ,0203 mechanical engineering ,law ,0202 electrical engineering, electronic engineering, information engineering ,Electronic engineering ,Waveform ,Clutter ,Electrical and Electronic Engineering ,Antenna (radio) ,Radar ,Physics::Atmospheric and Oceanic Physics ,Computer Science::Information Theory - Abstract
A recent method proposed by L. L. Guo, H. Deng, and B. Himed in “Waveform Optimization for Transmit Beamforming with MIMO Radar Antenna Arrays,” IEEE Trans. Antennas Propag. vol. 63, no. 2, pp. 543–552, Feb. 2015, claims that the multiple-input multiple-output (MIMO) radar can form a transmit beam pattern with nulls in specific directions to alleviate the clutter and make the radar signals undetectable with initial phase optimization. However, it lacks some of the important aspects and may create an incorrect impression about transmit beamforming of MIMO radars. This comment shows that the virtual transmit beam pattern cannot reflect the practical radiation energy of the radar array. Even the virtual transmit beam pattern has nulls in the preselected directions, the clutter from these directions cannot be alleviated at the radar receiver, and the MIMO radar signals would still be detectable in these directions.
- Published
- 2018
37. Kinetics modeling of myeloid cells in rhesus macaques with pulse-chase BrdU labeling
- Author
-
Ziyuan He, Chie Sugimoto, Carolina Allers, Hideki Fujioka, Elizabeth Didier, and Marcelo J Kuroda
- Subjects
Immunology ,Immunology and Allergy - Abstract
Myeloid cells are continuously produced via bone marrow hematopoiesis and then cleared from the circulation to maintain homeostasis. To better understand the kinetics of such cell movement, we applied in vivo BrdU pulse-chase labeling and flow cytometry analysis to follow the kinetics of cell division during homeostasis of each subset of myeloid cells in peripheral blood in rhesus macaques. Results were applied to a mathematical model to estimate the half-life and daily production of each subset as follows; neutrophils (1.63±0.16 days, 1.42×109cells/L/day), basophils (1.78±0.30 days, 5.89×106 cells/L/day), classical monocytes (1.01±0.15 days, 3.09×108 cells/L/day), intermediate monocytes (1.23±0.14 days, 2.90×107 cells/L/day), non-classical monocytes (3.45±0.93 days, 1.58×107 cells/L/day), CD1c+ myeloid dendritic cells (DCs) (1.11±0.16 days, 1.65×107 cells/L/day), CD123+ plasmacytoid DCs (2.69±0.38 days, 9.67×105 cells/L/day). Unlike monocytes which were released into the blood circulation as soon as 1 day after dividing, neutrophils required ~4–5 days in bone marrow before being released. Interestingly, even within the granulocyte population, neutrophils and basophils exhibited distinct kinetics in peripheral blood and different bone marrow maturation times. We also applied our model to healthy rhesus macaques ranging from 3 to 19 years of age and observed that while the half-life of neutrophils did not change with increasing age, the older animals produced fewer neutrophils per day. In addition to neutrophils and monocytes, the non-classical (inflammatory) monocytes, pDCs and mDCs, as well as basophils, were relatively shorter-lived cells that may contribute to protection and homeostasis at steady state.
- Published
- 2017
38. Solving ambiguity for sparse array via particle swarm optimization
- Author
-
Kai Yang, Jun Ouyang, Ziyuan He, and Zhiqin Zhao
- Subjects
Mathematical optimization ,Statistics::Applications ,media_common.quotation_subject ,Particle swarm optimization ,Function (mathematics) ,Ambiguity ,Manifold ,Statistics::Computation ,Power (physics) ,Sparse array ,Multiple signal classification ,Spurious relationship ,Algorithm ,Computer Science::Information Theory ,Mathematics ,media_common - Abstract
Sparse linear arrays are subject to manifold ambiguity in genera. A method to solve the manifold ambiguity of uncorrelated sources for sparse array is proposed in this paper. The method is consisted of two steps. The first step is to obtain all the directions of arrivals (DOAs) by traditional MUltiple SIgnal Classification (MUSIC) algorithm, including true and spurious DOAs. The second step is to estimate the power values of all the DOAs by substituting all the DOAs to a cost function. The particle warm optimization (PSO) are applied to estimate the power values. The power values of spurious DOAs are very small or tends to zero compared with the values of the true DOAs. Simulation results demonstrate the effectiveness and the feasibility of the method.
- Published
- 2011
39. Power and DOA estimation for array processing using particle swarm optimization
- Author
-
Ziyuan He, Zhiqin Zhao, Kai Yang, and Jun Ouyang
- Subjects
Engineering ,Mathematical optimization ,Signal-to-noise ratio ,Fitness function ,business.industry ,Convergence (routing) ,Particle swarm optimization ,Array processing ,Direction of arrival ,Function (mathematics) ,Multi-swarm optimization ,business ,Algorithm - Abstract
To increase the capacity of mobile communications, it is important to accurately estimate the power and the direction of arrival (DOA) of source. An efficient algorithm is proposed for this purpose. A cost function is optimized by using the particle swarm optimization (PSO). To accelerate the convergence of the fitness function of PSO, the inertia weights of particles are different from each other and are updated according to the values of fitness. The simulation results show that the proposed algorithm not only can be applied at the case that MUltiple SIgnal Classification (MUSIC) algorithm is useful, but also at the case that MUSIC is not useful, for example, when the number of signal sources is greater than or equal to the number of the elements of the array. It can simultaneously estimate the DOAs and powers of signals accurately.
- Published
- 2011
40. Direction and polarisation estimation using polarised cylindrical conformal arrays
- Author
-
Joan Lasenby, Ziyuan He, and L. Zou
- Subjects
Directional antenna ,Direction finding ,business.industry ,Conformal antenna ,Geometry ,Conformal map ,Symmetry (physics) ,Azimuth ,Optics ,Signal Processing ,Rotational invariance ,Electrical and Electronic Engineering ,Antenna (radio) ,business ,Mathematics - Abstract
In this study, the authors describe two-dimensional direction finding and signal polarisation estimation from a cylindrical conformal array consisting of directional and polarised antenna elements. Firstly, a simple and general transformation procedure, based on the mathematical framework of geometric algebra, is presented for arbitrary conformal arrays with polarised and directional antennas. Subsequently, the authors utilise the symmetry of cylindrical arrays to estimate signal parameters via rotational invariance techniques. The authors show how to iteratively estimate the azimuth and elevation angles of the incident signal, as well as its polarisation. To illustrate the versatility of this method, the results of simulations on a 3×4 cylindrical conformal array are shown and discussed.
- Published
- 2012
41. Pattern analysis of conformal array based on geometric algebra
- Author
-
Ziyuan He, Joan Lasenby, and L. Zou
- Subjects
Conformal antenna ,Conformal geometric algebra ,Conformal map ,Topology ,Euler angles ,Algebra ,Geometric algebra ,symbols.namesake ,Matrix (mathematics) ,symbols ,Electrical and Electronic Engineering ,Representation (mathematics) ,Conformal geometry ,Mathematics - Abstract
In this study, a general and systematic method for three-dimensional pattern analysis of arbitrary conformal arrays is presented; this analysis is based on the mathematical framework of geometric algebra and considers both directional and polarised element patterns. A compact representation of the conformal array pattern is presented. Aside from being simpler and more direct than other derivations in the literature, this derivation is also entirely general in that it expresses the transformations in terms of rotors that can easily be formulated for any arbitrary conformal array geometry. Analysing conformal arrays using geometric algebra is simpler than the traditional Euler rotation angles and matrix representations. As well as presenting the new derivation and comparing it with conventional methods, the authors also present simulation results on cylindrical and conical arrays to illustrate the practicality and conciseness of the proposed method.
- Published
- 2011
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