24 results on '"Youchao Deng"'
Search Results
2. Structure–Activity Relationship Studies of Venglustat on NTMT1 Inhibition
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Youchao Deng, Guangping Dong, Ying Meng, Nicholas Noinaj, and Rong Huang
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Drug Discovery ,Molecular Medicine - Published
- 2023
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3. Venglustat Inhibits Protein N-Terminal Methyltransferase 1 in a Substrate-Competitive Manner
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Guangping Dong, Youchao Deng, Adam Yasgar, Ravi Yadav, Daniel Talley, Alexey V. Zakharov, Sankalp Jain, Ganesha Rai, Nicholas Noinaj, Anton Simeonov, and Rong Huang
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Quinuclidines ,Drug Discovery ,Glycosyltransferases ,Molecular Medicine ,Carbamates ,Methyltransferases ,Enzyme Inhibitors ,Ceramides ,Methylation - Abstract
Venglustat is a known allosteric inhibitor for ceramide glycosyltransferase, investigated in diseases caused by lysosomal dysfunction. Here, we identified venglustat as a potent inhibitor (IC
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- 2022
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4. Venglustat Analogues with Enhanced Inhibition for Protein N-Terminal Methyltransferases 1/2
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Rong Huang, Youchao Deng, and Ying Meng
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- 2023
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5. Discovery of a mammalian FASN inhibitor against xenografts of non-small cell lung cancer and melanoma
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Danfeng Cao, Jie Yang, Youchao Deng, Meng Su, Yeji Wang, Xueqiong Feng, Yi Xiong, Enhe Bai, Yanwen Duan, and Yong Huang
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Fatty Acid Synthase, Type I ,Mammals ,Cancer Research ,Lung Neoplasms ,Carcinoma, Non-Small-Cell Lung ,Genetics ,Animals ,Heterografts ,Humans ,Melanoma - Published
- 2022
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6. Semisynthesis and Biological Evaluation of Platencin Thioether Derivatives: Dual FabF and FabH Inhibitors against MRSA
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Xiang Weng, Yuling Li, Yanwen Duan, Shaowen Li, Zhongqing Wen, Yanqiu Yuan, Ben Shen, Youchao Deng, Saibin Zhu, Yong Huang, and Jian Pan
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chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,medicine.drug_class ,Organic Chemistry ,Antibiotics ,medicine.disease_cause ,01 natural sciences ,Biochemistry ,Semisynthesis ,In vitro ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Antibiotic resistance ,Enzyme ,Staphylococcus aureus ,In vivo ,Drug Discovery ,medicine ,Antibacterial activity - Abstract
[Image: see text] The discovery and clinical use of multitarget monotherapeutic antibiotics is regarded as a promising approach to reduce the development of antibiotic resistance. Platencin (PTN), a potent natural antibiotic initially isolated from a soil actinomycete, targets both FabH and FabF, the initiation and elongation condensing enzymes for bacterial fatty acid biosynthesis. However, its further clinical development has been hampered by poor pharmacokinetics. Herein we report the semisynthesis and biological evaluation of platencin derivatives 1–15 with potent antibacterial activity against methicillin-resistant Staphylococcus aureus in vitro. Some of these PTN analogues showed similar yet distinct interactions with FabH and FabF, as shown by molecular docking, differential scanning fluorometry, and isothermal titration calorimetry. Compounds 3, 8, 10, and 14 were further evaluated in a mouse peritonitis model, among which 8 showed in vivo antibacterial activity comparable to that of PTN. Our results suggest that semisynthetic modification of PTN is a rapid route to obtain active PTN derivatives that might be further developed as promising antibiotics against drug-resistant major pathogens.
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- 2021
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7. Application of electric drive fracturing equipment in shale gas reservoir stimulation
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Shuangpeng Li, Lei Li, Bin Zhang, Youchao Deng, Qiping Dai, and Yongchao Qiu
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Truck ,Shale gas ,Energy Engineering and Power Technology ,Frequency conversion technology ,02 engineering and technology ,010502 geochemistry & geophysics ,01 natural sciences ,020401 chemical engineering ,0204 chemical engineering ,Electric drive ,Operating cost ,Reservoir ,0105 earth and related environmental sciences ,lcsh:Gas industry ,Petroleum engineering ,lcsh:TP751-762 ,Process Chemistry and Technology ,Process (computing) ,Geology ,Fracturing stimulation ,Geotechnical Engineering and Engineering Geology ,Technical progress ,Power (physics) ,Fracturing equipment ,Skid (automobile) ,Modeling and Simulation ,Environmental science - Abstract
Fracturing equipment is the core device in shale gas reservoir stimulation. As domestic shale gas exploration and development steps into deep layers, the development of fracturing technology puts forward higher requirements for relevant equipment. Electric drive is an important development direction of fracturing equipment technology. In this paper, the technical progress of electric drive fracturing equipment in China and abroad was investigated. It is shown that a high-power frequency conversion system is the key technology to determine the performance of electric drive fracturing equipment. After the adaptability of the high-power frequency conversion technology to electric drive fracturing equipment was analyzed, based on the fracturing operation of Model 2500 electric drive fracturing trucks in the Weiyuan Block of the Sichuan Basin for shale gas reservoir stimulation, electric drive and diesel-driven fracturing equipment were comparatively analyzed from the aspects of economic and technical indicators. And the following research results were obtained. First, compared with a diesel-driven fracturing truck of the same power, an electric drive fracturing truck can realize a full power coverage and a continuous adjustment of output displacement, and can better meet the operation requirements of fracturing process for a precise control of the pumping displacement, while reducing the power cost by 68% and the equipment purchase cost by 10–20%. Second, compared with the skid mounted equipment, an electric drive fracturing truck has a better transport performance, being suitable for the fracturing well sites with poor road conditions, such as loess gullies, hills and mountains. It is suggested that the following development direction of the electric drive fracturing equipment should focus on the improvement of single machine power density. In addition, it is recommended to enhance the basic studies on high-pressure and high-power semiconductor devices and make a good plan for the power demand of shale gas platform construction in advance, so as to give a better play to the operating cost advantage of electric drive fracturing equipment.
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- 2020
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8. Discovery of a potent and dual-selective bisubstrate inhibitor for protein arginine methyltransferase 4/5
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Dongxing Chen, Rong Huang, Youchao Deng, Ayad A. Al-Hamashi, and Guangping Dong
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Methyltransferase ,Arginine ,IC50, half-maximal inhibition concentration ,RM1-950 ,Tripeptide ,03 medical and health sciences ,0302 clinical medicine ,Protein arginine methyltransferase ,Moiety ,Protein arginine methyltransferase 4 ,Protein arginine methyltransferase 5 ,General Pharmacology, Toxicology and Pharmaceutics ,IC50 ,030304 developmental biology ,0303 health sciences ,Protein-arginine methyltransferase ,Drug discovery ,Chemistry ,Bisubstrate analogue ,SAM, S-adenosylmethionine ,NTMTs, N-terminal methyltransferases ,SNF, sinofungin ,TLC, thin-layer chromatography ,PRMTs, protein arginine methyltransferases ,Bisubstrate inhibitor ,Biochemistry ,GAR, glycine and arginine ,030220 oncology & carcinogenesis ,Original Article ,PKMTs, protein lysine methyltransferases ,Therapeutics. Pharmacology ,SAH, S-(5′-adenosyl)-l-homocysteine - Abstract
Protein arginine methyltransferases (PRMTs) have been implicated in the progression of many diseases. Understanding substrate recognition and specificity of individual PRMT would facilitate the discovery of selective inhibitors towards future drug discovery. Herein, we reported the design and synthesis of bisubstrate analogues for PRMTs that incorporate a S-adenosylmethionine (SAM) analogue moiety and a tripeptide through an alkyl substituted guanidino group. Compound AH237 is a potent and selective inhibitor for PRMT4 and PRMT5 with a half-maximal inhibition concentration (IC50) of 2.8 and 0.42 nmol/L, respectively. Computational studies provided a plausible explanation for the high potency and selectivity of AH237 for PRMT4/5 over other 40 methyltransferases. This proof-of-principle study outlines an applicable strategy to develop potent and selective bisubstrate inhibitors for PRMTs, providing valuable probes for future structural studies., Graphical abstract A potent bisubstrate PRMT inhibitor AH237 was developed, displaying an exceptional selectivity for PRMT4 and PRMT5 with IC50 of 2.8 and 0.42 nmol/L, respectively. This would facilitate the understanding of the biochemical properties for PRMT4/5 and pave the avenue to develop selective and cell-potent PRMT inhibitors.Image 1
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- 2020
9. Morphing Natural Product Platensimycin via Heck, Sonogashira, and One-Pot Sonogashira/Cycloaddition Reactions to Produce Antibiotics with In Vivo Activity
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Youchao Deng, Yuling Li, Zhongqing Wen, Claudia H. Ruiz, Xiang Weng, Michael D. Cameron, Yanwen Duan, and Yong Huang
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Microbiology (medical) ,endocrine system ,Infectious Diseases ,platensimycin ,Staphylococcus aureus ,antibiotic ,FabF ,FabB ,C–C cross-coupling reactions ,Pharmacology (medical) ,General Pharmacology, Toxicology and Pharmaceutics ,Biochemistry ,Microbiology - Abstract
Type II fatty acid synthases are promising drug targets against major bacterial pathogens. Platensimycin (PTM) is a potent inhibitor against β-ketoacyl-[acyl carrier protein] synthase II (FabF) and β-ketoacyl-[acyl carrier protein] synthase I (FabB), while the poor pharmacokinetics has prevented its further development. In this work, thirty-two PTM derivatives were rapidly prepared via Heck, Sonogashira, and one-pot Sonogashira/cycloaddition cascade reactions based on the Gram-scale synthesis of 6-iodo PTM (4). About half of the synthesized compounds were approximately equipotent to PTM against the tested Staphylococcus aureus strains. Among them, the representative compounds 4, A4, and B8 exhibited different plasma protein binding affinity or stability in the human hepatic microsome assay and showed improved in vivo efficacy over PTM in a mouse peritonitis model. In addition, A4 was also effective in an S. aureus-infected skin mouse model. Our study not only significantly expands the known PTM derivatives with improved antibacterial activities in vivo, but showcased that C–C cross-coupling reactions are useful tools to functionalize natural product drug leads.
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- 2022
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10. Task Offloading for Mixed Cloud/Fog Computing in Vehicular Network Using Genetic Particle Swarm Optimization
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Lin Li, Ping Wang, and Youchao Deng
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Fog computing ,Computer science ,business.industry ,Real-time computing ,Particle swarm optimization ,Cloud computing ,business ,Task (project management) - Published
- 2021
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11. Late-Stage Functionalization of Platensimycin Leading to Multiple Analogues with Improved Antibacterial Activity in Vitro and in Vivo
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Yuling Li, Ben Shen, Yanwen Duan, Meng Su, Nan Ren, Zhongqing Wen, Youchao Deng, Xiang Weng, Xinxin Ji, and Yong Huang
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Male ,Methicillin-Resistant Staphylococcus aureus ,Models, Molecular ,endocrine system ,Fatty Acid Synthases ,Staphylococcus ,Platensimycin ,Adamantane ,Mupirocin ,Peritonitis ,medicine.disease_cause ,01 natural sciences ,Article ,Small Molecule Libraries ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,In vivo ,Drug Discovery ,medicine ,Animals ,Humans ,Aminobenzoates ,Anilides ,030304 developmental biology ,0303 health sciences ,Chemistry ,Staphylococcal Infections ,In vitro ,Anti-Bacterial Agents ,0104 chemical sciences ,Mice, Inbred C57BL ,010404 medicinal & biomolecular chemistry ,Biochemistry ,Thiolysis ,Staphylococcus aureus ,Molecular Medicine ,Antibacterial activity - Abstract
Bacterial fatty acid synthases are promising antibacterial targets against multi-drug resistant pathogens. Platensimycin (PTM) is a potent FabB/FabF inhibitor, while its poor pharmacokinetics hampers the clinical development. In this study, a focused library of PTM derivatives was prepared through thiolysis of PTM oxirane (1), followed by various C−C cross-coupling reactions in high yields. Antibacterial screening of these compounds in vitro yielded multiple hits with improved anti-Staphylococcus activities over PTM. Among them, compounds A1, A3, A17, and A28 exhibited improved antibacterial activities over PTM against methicillin-resistant Staphylococcus aureus (MRSA) in a mouse peritonitis model. Compound A28 was further shown to be effective against MRSA infection in a mouse wound model, in comparison to mupirocin. Therefore, the facile preparation and screening of these PTM derivatives, together with their potent antibacterial activities in vivo, suggest a promising strategy to improve the antibacterial activity and pharmacokinetic properties of PTM.
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- 2019
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12. Novel Bisubstrate Inhibitors for Protein N-Terminal Acetyltransferase D
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Yi-Hsun Ho, Ronen Marmorstein, Youchao Deng, Zhi Huang, Sunbin Deng, Rong Huang, and Sarah M Gardner
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Stereochemistry ,Coenzyme A ,Peptide ,Crystallography, X-Ray ,01 natural sciences ,Cofactor ,Article ,Histone H4 ,03 medical and health sciences ,chemistry.chemical_compound ,Structure-Activity Relationship ,Cell Line, Tumor ,Drug Discovery ,Humans ,Amino Acid Sequence ,Enzyme Inhibitors ,N-Terminal Acetyltransferase D ,030304 developmental biology ,Enzyme Assays ,chemistry.chemical_classification ,0303 health sciences ,biology ,Molecular Structure ,Acetyltransferases ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Kinetics ,Enzyme ,chemistry ,Acetyltransferase ,Drug Design ,biology.protein ,Molecular Medicine ,Selectivity ,Peptides ,Protein Binding - Abstract
Protein N-terminal acetyltransferase D (NatD, NAA40) that specifically acetylates the alpha-N-terminus of histone H4 and H2A has been implicated in various diseases, but no inhibitor has been reported for this important enzyme. Based on the acetyl transfer mechanism of NatD, we designed and prepared a series of highly potent NatD bisubstrate inhibitors by covalently linking coenzyme A to different peptide substrates via an acetyl or propionyl spacer. The most potent bisubstrate inhibitor displayed an apparent Ki value of 1.0 nM. Biochemical studies indicated that bisubstrate inhibitor is competitive to the peptide substrate and noncompetitive to the cofactor, suggesting NatD undergoes an ordered Bi-Bi mechanism. We also demonstrated that these inhibitors are highly specific towards NatD, displaying about 1,000-fold selectivity over other closely related acetyltransferases. High-resolution crystal structures of NatD bound to two of these inhibitors revealed the molecular basis for their selectivity and inhibition mechanism, providing a rational path for future inhibitor development.
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- 2021
13. Structure-based Discovery of Cell-Potent Peptidomimetic Inhibitors for Protein N-Terminal Methyltransferase 1
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Dongxing Chen, Nicholas Noinaj, Rong Huang, Youchao Deng, and Guangping Dong
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Methyltransferase ,biology ,010405 organic chemistry ,Chemistry ,Peptidomimetic ,Organic Chemistry ,Cell ,Regulator ,Active site ,Methylation ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,medicine.anatomical_structure ,Amide ,Drug Discovery ,biology.protein ,medicine ,IC50 - Abstract
[Image: see text] Protein N-terminal methyltransferases (NTMTs) catalyze the methylation of the α-N-terminal amines of proteins starting with an X–P–K/R motif. NTMT1 has been implicated in various cancers and in aging, implying its role as a potential therapeutic target. Through structural modifications of a lead NTMT1 inhibitor, BM30, we designed and synthesized a diverse set of inhibitors to probe the NTMT1 active site. The incorporation of a naphthyl group at the N-terminal region and an ortho-aminobenzoic amide at the C-terminal region of BM30 generates the top cell-potent inhibitor DC541, demonstrating increased activity on both purified NTMT1 (IC(50) of 0.34 ± 0.02 μM) and the cellular α-N-terminal methylation level of regulator of chromosome condensation 1 (RCC1, IC(50) value of 30 μM) in human colorectal cancer HT29 cells. Furthermore, DC541 exhibits over 300-fold selectivity to several methyltransferases. This study points out the direction for the development of more cell-potent inhibitors for NTMT1.
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- 2021
14. Stereoselective functionalization of platensimycin and platencin by sulfa-Michael/aldol reactions
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Zhongqing Wen, Lin Qiu, Yuling Li, Yong Huang, Ben Shen, Youchao Deng, Yanwen Duan, and Kai Tian
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010405 organic chemistry ,Stereochemistry ,Platensimycin ,Organic Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Semisynthesis ,0104 chemical sciences ,Stereocenter ,chemistry.chemical_compound ,chemistry ,Aldol reaction ,Thiophene ,Surface modification ,Stereoselectivity ,Physical and Theoretical Chemistry ,Heterocyclic derivatives - Abstract
Bioinspired sulfa-Michael/aldol cascade reactions have been developed for the semisynthesis of sulfur-containing heterocyclic derivatives of platensimycin and platencin, with three newly formed contiguous stereogenic centers. Density functional theory calculations revealed the mechanism for the stereochemistry control. This method was used in a synthesis of a platensimycin thiophene analogue with potent antibacterial activities against Staphylococcus aureus.
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- 2019
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15. Semisynthesis and Biological Evaluation of Platensimycin Analogues with Varying Aminobenzoic Acids
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Kai Tian, Lin Qiu, Ben Shen, Xiangcheng Zhu, Yanwen Duan, Yong Huang, and Youchao Deng
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endocrine system ,Natural product ,010405 organic chemistry ,medicine.drug_class ,Stereochemistry ,Platensimycin ,Antibiotics ,General Chemistry ,010402 general chemistry ,medicine.disease_cause ,01 natural sciences ,Semisynthesis ,Article ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Staphylococcus aureus ,medicine ,Aminobenzoic acid ,Biological evaluation - Abstract
Platensimycin (PTM) is an excellent natural product drug lead against various gram-positive pathogens, including methicillin-resistant Staphylococcus aureus and vancomycin-resistant enterococci. In this study, twenty PTM derivatives with varying aminobenzoic acids were semisynthesized. In contrast to all the previous reported inactive aminobenzaote analogues, a few of them showed moderate antibacterial activities against S. aureus. Our study suggested that modification of the conserved aminobenzoic acid remains a viable approach to diversify the PTM scaffold.
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- 2018
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16. Biomimetic Stereoselective Sulfa-Michael Addition Leads to Platensimycin and Platencin Sulfur Analogues against Methicillin-Resistant Staphylococcus aureus
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Ben Shen, Haoyu Liang, Lin Qiu, Yanwen Duan, Kai Tian, Youchao Deng, Dingding Kang, Yong Huang, Xiangcheng Zhu, and Zhongqing Wen
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Methicillin-Resistant Staphylococcus aureus ,endocrine system ,Stereochemistry ,Platensimycin ,Pharmaceutical Science ,chemistry.chemical_element ,Adamantane ,Microbial Sensitivity Tests ,Aminophenols ,010402 general chemistry ,medicine.disease_cause ,01 natural sciences ,Article ,Analytical Chemistry ,Terpene ,Structure-Activity Relationship ,chemistry.chemical_compound ,Biomimetics ,Drug Discovery ,medicine ,Structure–activity relationship ,Aminobenzoates ,Anilides ,Polycyclic Compounds ,Pharmacology ,Biological Products ,010405 organic chemistry ,Organic Chemistry ,Sulfur ,Anti-Bacterial Agents ,0104 chemical sciences ,Complementary and alternative medicine ,chemistry ,Staphylococcus aureus ,Michael reaction ,Molecular Medicine ,Stereoselectivity ,Selectivity - Abstract
Several sulfur-containing platensimycin (PTM) and platencin (PTN) analogues, with activities comparable to the parent natural products, have recently been discovered from microorganisms, implying a biomimetic route to diversify the PTM and PTN scaffolds for structure−activity relationship study. We present here a substrate-directed and scaleable semisynthetic strategy to make PTM and PTN sulfur analogues with excellent diasteroselectivity, without using any chiral catalysts. Most of the sulfur analogues showed strong activities against clinical Staphylococcus aureus isolates, with minimum inhibitory concentrations of 0.5−2 μg mL(−1). Density functional theory calculations were in agreement with the observed selectivity for these analogues and suggest that the conformation restraints of the terpene cages of PTM and PTN on the transition states determine the si-face attack selectivity.
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- 2018
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17. The semi-synthesis, biological evaluation and docking analysis of the oxime, hydrazine and hydrazide derivatives of platensimycin
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Wenqing Zhou, Aijun Sun, Jie Shi, Youchao Deng, Jianhua Ju, Dingding Kang, Xiangcheng Zhu, Yong Huang, Ben Shen, and Yanwen Duan
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Pharmacology ,endocrine system ,Schiff base ,biology ,ATP synthase ,010405 organic chemistry ,Platensimycin ,Organic Chemistry ,Pharmaceutical Science ,010402 general chemistry ,Oxime ,Hydrazide ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,0104 chemical sciences ,Terpene ,chemistry.chemical_compound ,Acyl carrier protein ,chemistry ,Docking (molecular) ,Drug Discovery ,biology.protein ,Molecular Medicine - Abstract
A dozen oxime, hydrazine and hydrazide derivatives of platensimycin (PTM) analogues were synthesized, some of which showed strong antibacterial activities and were shown to be stable under the bioassay conditions. Docking analysis revealed that they have certain new interactions with β-ketoacyl-[acyl carrier protein] synthase II (FabF), suggesting that Schiff base formation on its terpene scaffold is an effective strategy to diversify PTM structure.
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- 2018
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18. Design, synthesis and biological Evaluation of Dual acetyl cholinesterase and beta-secretase inhibitors in treatment for alzheimer's Disease
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Youchao, Deng, Yuren, Jiang, Xiongjie, Zhao, and Jinlian, Wang
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Amyloid beta-Peptides ,HEK293 Cells ,Alzheimer Disease ,Acetylcholinesterase ,Humans ,Cholinesterase Inhibitors ,Amyloid Precursor Protein Secretases ,Ligands ,Cell Line - Abstract
With the recent research advances in molecular biology and technology multiple credible hypotheses about the progress of Alzheimer's disease (AD) have been proposed, among which the amyloid and cholinergic hypotheses are commonly used to develop reliable therapeutic agents. The multitarget-directed ligand (MTDL) approach was taken in this work to develop muilti-functional agents, which can mainly serve as dual beta-secretase (BACE 1) and Acetylcholinesterase (AChE) inhibitors. Series of new compounds were designed, synthesized and evaluated in this work, from which we identified 2-((4-(1,3-dioxoisoindolin-2-yl)benzyl)amino)-2-oxoethyl-2-(4-methoxyphenyl)acetate (1h) as a new dual cholinesterase and beta-secretase inhibitor without toxicity.
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- 2019
19. Evaluation of Platensimycin and Platensimycin-Inspired Thioether Analogues against Methicillin-Resistant Staphylococcus aureus in Topical and Systemic Infection Mouse Models
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Liao-Bin Dong, Xueqiong Feng, Meng Su, Youchao Deng, Yanwen Duan, Claudia Ruiz, Yong Huang, Jeffrey D. Rudolf, Ben Shen, Lin Qiu, and Michael D. Cameron
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Platensimycin ,Antibiotics ,Pharmaceutical Science ,Adamantane ,02 engineering and technology ,medicine.disease_cause ,030226 pharmacology & pharmacy ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Drug Stability ,Drug Discovery ,Fatty Acid Synthase, Type II ,Medicine ,Aminobenzoates ,Anilides ,Prodrugs ,Mice, Inbred BALB C ,Prodrug ,021001 nanoscience & nanotechnology ,Anti-Bacterial Agents ,Treatment Outcome ,Staphylococcus aureus ,Molecular Medicine ,Fatty Acid Synthesis Inhibitors ,Female ,Staphylococcal Skin Infections ,0210 nano-technology ,Burns ,Methicillin-Resistant Staphylococcus aureus ,endocrine system ,medicine.drug_class ,Peritonitis ,Sulfides ,Article ,Microbiology ,03 medical and health sciences ,In vivo ,Microsomes ,Drug Resistance, Bacterial ,Animals ,business.industry ,Biofilm ,medicine.disease ,Methicillin-resistant Staphylococcus aureus ,Mice, Inbred C57BL ,Disease Models, Animal ,chemistry ,Biofilms ,business - Abstract
Staphylococcus aureus is one of the most common pathogens causing hospital-acquired and community-acquired infections. Methicillin-resistant S. aureus (MRSA)-formed biofilms in wounds are difficult to treat with conventional antibiotics. By targeting FabB/FabF of bacterial fatty acid synthases, platensimycin (PTM) was discovered to act as a promising natural antibiotic against MRSA infections. In this study, PTM and its previously synthesized sulfur-Michael derivative PTM-2t could reduce over 95% biofilm formation by S. aureus ATCC 29213 when used at 2 μg/mL in vitro. Topical application of ointments containing PTM or PTM-2t (2 × 4 mg/day/mouse) was successfully used to treat MRSA infections in a BABL/c mouse burn wound model. As a potential prodrug lead, PTM-2t showed improved in vivo efficacy in a mouse peritonitis model compared with PTM. Our study suggests that PTM and its analogue may be used topically or locally to treat bacterial infections. In addition, the use of prodrug strategies might be instrumental to improve the poor pharmacokinetic properties of PTM.
- Published
- 2019
20. Semisynthesis of Platensimycin Derivatives with Antibiotic Activities in Mice via Suzuki-Miyaura Cross-Coupling Reactions
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Zhongqing Wen, Yuling Li, Dingding Kang, Meng Su, Lin Qiu, Xingyun Liu, Ben Shen, Youchao Deng, Yong Huang, and Yanwen Duan
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Male ,Methicillin-Resistant Staphylococcus aureus ,endocrine system ,medicine.drug_class ,Platensimycin ,Antibiotics ,Adamantane ,Microbial Sensitivity Tests ,Peritonitis ,010402 general chemistry ,medicine.disease_cause ,01 natural sciences ,Coupling reaction ,Article ,Microbiology ,chemistry.chemical_compound ,Drug Discovery ,medicine ,Animals ,Aminobenzoates ,Anilides ,Streptomyces platensis ,Soil bacteria ,010405 organic chemistry ,Chemistry ,Staphylococcal Infections ,Semisynthesis ,0104 chemical sciences ,Anti-Bacterial Agents ,Molecular Docking Simulation ,Disease Models, Animal ,Staphylococcus aureus ,Molecular Medicine ,Antibacterial activity - Abstract
Platensimycin (PTM), originally isolated from soil bacteria Streptomyces platensis, is a potent FabF inhibitor against many Gram-positive pathogens, such as methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant enterococci. However, the further clinical development of PTM is hampered by its poor pharmacokinetic properties. In this study, 20 PTM derivatives were prepared by Suzuki–Miyaura cross-coupling reactions catalyzed by Pd (0)/C. Compared to PTM, 6-pyrenyl PTM (6t) showed improved antibacterial activity against MRSA in a mouse peritonitis model. Our results support the strategy to target the essential fatty acid synthases in major pathogens, in order to discover and develop new generations of antibiotics.
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- 2018
21. Biosynthesis of thiocarboxylic acid-containing natural products
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Youchao Deng, Nan Wang, K. N. Houk, Dingding Kang, Liao-Bin Dong, Yong Huang, Yanwen Duan, Jeffrey D. Rudolf, Cyndi Qixin He, and Ben Shen
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0301 basic medicine ,Stereochemistry ,Science ,Coenzyme A ,Platensimycin ,Sulfur metabolism ,General Physics and Astronomy ,Adamantane ,010402 general chemistry ,Aminophenols ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,Rare Diseases ,Biosynthesis ,Escherichia coli ,Moiety ,Anilides ,Polycyclic Compounds ,Aminobenzoates ,lcsh:Science ,chemistry.chemical_classification ,Biological Products ,Multidisciplinary ,Drug discovery ,General Chemistry ,Streptomyces ,0104 chemical sciences ,Thiocarboxylic acid ,030104 developmental biology ,chemistry ,Multigene Family ,lcsh:Q ,Pharmacophore ,Sulfur - Abstract
Thiocarboxylic acid-containing natural products are rare and their biosynthesis and biological significance remain unknown. Thioplatensimycin (thioPTM) and thioplatencin (thioPTN), thiocarboxylic acid congeners of the antibacterial natural products platensimycin (PTM) and platencin (PTN), were recently discovered. Here we report the biosynthetic origin of the thiocarboxylic acid moiety in thioPTM and thioPTN. We identify a thioacid cassette encoding two proteins, PtmA3 and PtmU4, responsible for carboxylate activation by coenzyme A and sulfur transfer, respectively. ThioPTM and thioPTN bind tightly to β-ketoacyl-ACP synthase II (FabF) and retain strong antibacterial activities. Density functional theory calculations of binding and solvation free energies suggest thioPTM and thioPTN bind to FabF more favorably than PTM and PTN. Additionally, thioacid cassettes are prevalent in the genomes of bacteria, implicating that thiocarboxylic acid-containing natural products are underappreciated. These results suggest that thiocarboxylic acid, as an alternative pharmacophore, and thiocarboxylic acid-containing natural products may be considered for future drug discovery.
- Published
- 2018
22. Design, Synthesize and Bio-Evaluate 1,2-Dihydroisoquinolin-3(4H)-One Derivates as Acetylcholinesterase and β-Secretase Dual Inhibitors in Treatment with Alzheimer’s Disease
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Xiongjie Zhao, Youchao Deng, Jiang Yuren, and Jinlian Wang
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chemistry.chemical_classification ,Reactive oxygen species ,biology ,Amyloid ,010405 organic chemistry ,Aché ,010402 general chemistry ,Ligand (biochemistry) ,01 natural sciences ,Acetylcholinesterase ,language.human_language ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Toxicity ,biology.protein ,language ,Cholinergic ,Cholinesterase - Abstract
With the recent research advances in molecular biology and technology, many credible hypothe-ses about the progress of Alzheimer’s disease (AD) have been proposed, among which the amyloid and cholinergic hypotheses are commonly used to develop reliable therapeutic agents. The multitarget-directed ligand (MTDL) approach was taken in this work to develop multi-functional agents, which can mainly serve as dual BACE 1 and AChE inhibitors. Depending on the scaffolds of (+)-(S)- dihydro-ar-tumerone and (-)-gallocatechin gallate, 3 series of new compounds have been designed, synthesized and evaluated, from which we have identified 2-(2-(3-methylbenzoyl)-3-oxo-1,2,3,4- tetrahydroisoquinolin-6-yl) isoindoline-1,3-dione (3d) as a new cholinesterase and β-secretase dual inhibitor without toxicity. Furthermore, 3d also exhibits hydrogen peroxide scavenging activity which could help to reduce the reactive oxygen species (ROS) in the brain of AD patients.
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- 2016
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23. Butyrylcholinesterase K Variant and Alzheimer’s Disease Risk: A Meta-Analysis
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Wang Xi, Xiao Dandan, Yuren Jiang, Du Yangsen, Wang Zongcheng, Jinlian Wang, and Youchao Deng
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Male ,Risk ,medicine.medical_specialty ,Apolipoprotein E4 ,Biology ,Polymorphism, Single Nucleotide ,Sensitivity and Specificity ,Gastroenterology ,White People ,Asian People ,Alzheimer Disease ,Polymorphism (computer science) ,Internal medicine ,Odds Ratio ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Age of Onset ,Butyrylcholinesterase ,Aged ,Aged, 80 and over ,General Medicine ,Odds ratio ,medicine.disease ,Confidence interval ,Meta-analysis ,Disease risk ,Female ,Alzheimer's disease ,Age of onset ,Publication Bias ,Meta-Analysis - Abstract
Background Although many studies have estimated the association between the butyrylcholinesterase (BCHE) K variant and Alzheimer’s disease (AD) risk, the results are still controversial. We thus conducted this meta-analysis. Material/Methods We searched NCBI, Medline, Web of Science, and Embase databases to find all eligible studies. Odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess the strength of the association. Results We found a significant association between BCHE K variant and AD risk (OR=1.20; 95% CI 1.03–1.39; P=0.02). In the stratified analysis by ethnicity, we observed a significant association between BCHE K variant and AD risk in Asians (OR=1.32; 95% CI 1.02–1.72; P=0.04). However, no significant association between BCHE K variant and AD risk in Caucasians was found (OR=1.14; 95% CI 0.95–1.37; P=0.16). When stratified by the age of AD onset, we found that late-onset AD (LOAD) was significantly associated with BCHE K variant (OR=1.44; 95% CI 1.05–1.97; P=0.02). No significant association between BCHE K variant and early-onset AD (EOAD) risk was observed (OR=1.16; 95% CI 0.89–1.51; P=0.27). Compared with non-APOE ɛ4 and non-BCHE K carriers, no significant association between BCHE K variant and AD risk was found (OR=1.11; 95% CI 0.91–1.35; P=0.30). However, APOE ɛ4 carriers showed increased AD risk in both non-BCHE K carriers (OR=2.81; 95% CI 1.75–4.51; P=0.0001) and BCHE K carriers (OR=3.31; 95% CI 1.82–6.02; P=0.0001). Conclusions The results of this meta-analysis indicate that BCHE K variant might be associated with AD risk.
- Published
- 2015
- Full Text
- View/download PDF
24. Biosynthesis, Total Synthesis and Semisynthesis of Platensimycin, Platencin and their Analogues
- Author
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Yong Huang, Kai Tian, Yuling Li, Youchao Deng, and Yanwen Duan
- Subjects
chemistry.chemical_compound ,chemistry ,Biosynthesis ,Stereochemistry ,Platensimycin ,Organic Chemistry ,Total synthesis ,Semisynthesis - Published
- 2018
- Full Text
- View/download PDF
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