128 results on '"Yibin Chen"'
Search Results
2. On the DAG Decomposition into Minimum Number of Chains
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Yangjun Chen and Yibin Chen
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- 2023
3. Multidomain variance-learnable prototypical network for few-shot diagnosis of novel faults
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Jianyu Long, Yibin Chen, Huiyu Huang, Zhe Yang, Yunwei Huang, and Chuan Li
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Artificial Intelligence ,Industrial and Manufacturing Engineering ,Software - Published
- 2023
4. A modified Salp Swarm Algorithm for parameter estimation of fractional-order chaotic systems
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Qingwen Cai, Renhuan Yang, Chao Shen, Kelong Yue, and Yibin Chen
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Computational Theory and Mathematics ,General Physics and Astronomy ,Statistical and Nonlinear Physics ,Mathematical Physics ,Computer Science Applications - Abstract
For the parameter estimation problem in research related to the fractional-order chaotic systems (FOCSs), a modified optimization algorithm based on Salp Swarm Algorithm (SSA) was developed in this paper. The proposed algorithm introduced several improvements on SSA: adding a grouping step, introducing “betrayal” behavior, and improving the update method of the followers. We applied multiple classical optimization algorithms to conduct the parameter estimation experiments on the fractional-order Lorenz chaotic system (Lorenz-FOCS) and the fractional-order Financial chaotic system (Financial-FOCS). In addition, we explored the impact of searching space on parameters estimation through experiments. The experimental results confirmed the feasibility of the modified Salp Swarm Algorithm (MSSA). The MSSA performed better than the SSA and other classical optimization algorithms in terms of the estimation accuracy and convergence rate.
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- 2023
5. A hybrid CNN-Transformer model for ozone concentration prediction
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Yibin Chen, Xiaomin Chen, Ailan Xu, Qiang Sun, and Xiaoyan Peng
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Atmospheric Science ,Health, Toxicology and Mutagenesis ,Management, Monitoring, Policy and Law ,Pollution - Published
- 2022
6. The Magnetic Properties of Different Proportions Cr-Doped Bifeo3 as Studied Using Heisenberg Model
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Jiajun Mo, Qinghang Zhang, Yibin Chen, Lebin Liu, Puyue Xia, Jiayun Yang, Yanfang Xia, and Min Liu
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Condensed Matter Physics ,Electronic, Optical and Magnetic Materials - Published
- 2022
7. A novel self-training semi-supervised deep learning approach for machinery fault diagnosis
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Jianyu Long, Yibin Chen, Zhe Yang, Yunwei Huang, and Chuan Li
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Strategy and Management ,Management Science and Operations Research ,Industrial and Manufacturing Engineering - Published
- 2022
8. Evaluation of Reachability Queries Based on Recursive DAG Decomposition
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Yangjun Chen, Yibin Chen, and Yifeng Zhang
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Computational Theory and Mathematics ,Computer Science Applications ,Information Systems - Published
- 2022
9. Gastroprotective Effect of Co-Fermented Collagen Peptide-Jackfruit Juice on Ethanol-Induced Gastric Lesion: Regulation of Akt/Erk/Nrf2 and Nf-Κb Signaling Pathway
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Mengqi Jiang, Zhengsen Long, Xiangzhou Yi, Hui Yu, Haohao Shi, Yibin Chen, and Xuanri Shen
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- 2023
10. Correction to: A hybrid CNN-Transformer model for ozone concentration prediction
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Yibin Chen, Xiaomin Chen, Ailan Xu, Qiang Sun, and Xiaoyan Peng
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Atmospheric Science ,Health, Toxicology and Mutagenesis ,Management, Monitoring, Policy and Law ,Pollution - Published
- 2022
11. Reduced MAGI3 level by HPV18E6 contributes to Wnt/β‐catenin signaling activation and cervical cancer progression
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Jihuan Liang, Xiaomei Yang, Duiping Feng, Wenxiu Lu, Ran Song, Zhuoli Yang, Qiong Qin, Hua Liu, Haibo Wang, Siyu Gu, Junqi He, Xuedi Cao, and Yibin Chen
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China ,HPV ,Wnt/β‐catenin ,Guanylate kinase ,cervical cancer ,QH301-705.5 ,viruses ,PDZ domain ,Wnt β catenin signaling ,Uterine Cervical Neoplasms ,General Biochemistry, Genetics and Molecular Biology ,Downregulation and upregulation ,Cell Movement ,Cell Line, Tumor ,medicine ,Humans ,Neoplasm Invasiveness ,PDZ ,Biology (General) ,Wnt Signaling Pathway ,MAGI3 ,Research Articles ,beta Catenin ,Carcinogen ,Adaptor Proteins, Signal Transducing ,Cervical cancer ,Human papillomavirus 18 ,Chemistry ,Papillomavirus Infections ,Wnt signaling pathway ,Membrane Proteins ,Cell migration ,Oncogene Proteins, Viral ,invasion ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Repressor Proteins ,Cancer research ,Female ,Research Article ,Transcription Factors - Abstract
Human papillomavirus type 18 (HPV18) has high carcinogenic power in invasive cervical cancer (ICC) development. However, the underlying mechanism remains elusive. The carcinogenic properties of HPV18 require the PDZ‐binding motif of its E6 oncoprotein (HPV18 E6) to degrade its target PSD95/Dlg/ZO‐1 (PDZ) proteins. In this study, we demonstrated that the PDZ protein membrane‐associated guanylate kinase, WW and PDZ domain containing 3 (MAGI3) inhibited the Wnt/β‐catenin pathway, and subsequently cervical cancer (CC) cell migration and invasion, via decreasing β‐catenin levels. By reducing MAGI3 protein levels, HPV18 E6 promoted CC cell migration and invasion through activation of Wnt/β‐catenin signaling. Furthermore, HPV18 rather than HPV16 was preferentially associated with the downregulation of MAGI3 and activation of the Wnt/β‐catenin pathway in CC. These findings shed light on the mechanism that gives HPV18 its high carcinogenic potential in CC progression., By reducing the level of MAGI3 protein, HPV18 E6 promotes cervical cancer cell migration and invasion through activation of Wnt/β‐catenin signaling. Furthermore, HPV18 rather than HPV16 is preferentially associated with downregulation of MAGI3 and activation of the Wnt/β‐catenin pathway in cervical cancer. These findings shed light on the mechanism that gives HPV18 its high carcinogenic potential in cervical cancer progression.
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- 2021
12. IK-SMOTE based data enhancement method for scene classification
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Yibin Chen, Jia Xu, and Li Li
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- 2022
13. Assessing parametric rainfall models in reproducing tropical cyclone rainfall characteristics
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Jian Yang, Zhongdong Duan, Yibin Chen, and Jinping Ou
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Atmospheric Science - Published
- 2023
14. Mediating and moderating effects in golf tourism
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Jamie M. Chen, Huimin Song, Yibin Chen, and Spatial Economics
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Attractiveness ,media_common.quotation_subject ,05 social sciences ,Geography, Planning and Development ,moderating effect ,Place identity ,Identity (social science) ,golf tourism ,Advertising ,Destination management ,mediating effect ,Structural equation modeling ,place identity ,Tourism, Leisure and Hospitality Management ,Perception ,0502 economics and business ,behavioral intention ,050211 marketing ,Psychology ,China ,050212 sport, leisure & tourism ,Tourism ,media_common ,disposable income - Abstract
This article examines the relationship between golf activities and tourist perceptions and intentions using data from 592 golf tourists on Hainan Island, China. The results obtained from structural equation modeling show that the attractiveness of the destination can improve the identity of the location, and both factors significantly increase the travel intentions of golf tourists (i.e. revisit intentions and word-of-mouth recommendations). The results also show that place identity has significant mediating effects between destination attractiveness and travel intentions. In addition, the results reveal that the disposable income of golf tourists has significant moderating effects on the attractiveness of the destination, the identity of the destination, and the intention to revisit. This study has some important economic implications for golf destination management. Golf course managers can improve the attractiveness of the destination and strengthen the identity of the location to enhance the behavioral intentions of golf tourists.
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- 2021
15. CircABCC4 Regulates the Proliferation, Migration, and Invasion of Colorectal Cancer SW620 Cells by Targeting Micro RNA-216a-3p
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Baoqi Xu, Haofeng Yuan, Yanhong Zhang, Yibin Chen, and Yiqian Li
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Colorectal cancer ,microRNA ,Biomedical Engineering ,medicine ,Cancer research ,Medicine (miscellaneous) ,Bioengineering ,Biology ,medicine.disease ,Biotechnology - Abstract
This work investigates the effect of circABCC4 on the proliferation, migration, and invasion of colorectal cancer SW620 cells; circABCC4’s regulation of miR-216a-3p is also studied. qRT-PCR was used to measure the levels of circABCC4 and miR-216a-3p in colorectal cancer and adjacent tissues. The human colorectal cancer SW620 cells were transfected with different constructs of circABCC4 or miR-216a-3p or both to study their interactions and combined effects on cell behavior. A dual-luciferase reporter experiment tested the targeted relationship between circABCC4 to miR-216a-3p. Furthermore, the behaviors of SW620 cells, such as cell viability, migration, and invasion, were investigated. Also, the proteins related to cell behaviors were investigated with western blotting. Our results showed that colorectal cancer tissues had a higher level of circABCC4 but a lower level miR-216a-3p. The increased level of circABCC4 and the reduced level of miR-216a-3p had analogous influences on the behaviors of SW620 cells, resulting in reduced cell proliferation, migration, and invasion; the levels of related protein were also decreased. Moreover, we found that disrupting miR-548c-3p could reverse the influence of inhibiting circABCC4 on SW620 cells. In addition, the dual-luciferase reporter assay results confirmed the targeting of miR-216a-3p by circABCC4. These data demonstrate that the silencing of circABCC4 may inhibit the proliferation, migration, and invasion of colorectal cancer cells by upregulating miR-548c-3p.
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- 2021
16. Synthesis of 0D/2D CdSe/HSr2Nb3O10 n–n heterojunction with excellent visible-light-driven photocatalytic performance
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Yibin Chen, Dan Luo, Yuelin Wei, Haining Liu, Yunfang Huang, Leqing Fan, and Jihuai Wu
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History ,Polymers and Plastics ,Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Business and International Management ,Condensed Matter Physics ,Industrial and Manufacturing Engineering - Published
- 2023
17. Associations of alcohol consumption with the risk and surgical outcomes of chronic rhinosinusitis in China: A case-control study
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Xueping Wang, Yibin Chen, Xiaoyuan Zhu, Yandong Zhou, Hongxia Su, and Yulin Zhao
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China ,Treatment Outcome ,Otorhinolaryngology ,Alcohol Drinking ,Risk Factors ,Case-Control Studies ,Humans ,Prospective Studies ,Immunoglobulin E - Abstract
To investigate the associations between weekly alcohol consumption and the risk and surgical outcome of Chronic Rhinosinusitis (CRS).A case-control study.The study population consisted of 1095 CRS patients and 909 healthy collected from the first affiliated hospital of Zhengzhou University between May 2018 and December 2019.Unconditional multivariate logistic regression analysis and Cox proportional hazards regression analysis were performed to estimate the association of alcohol consumption with the risk and surgical outcomes of CRS. Odds ratios (OR) or hazard ratio (HR) with 95% confidence intervals (CI) were calculated separately. The Kruskal-Wallis test was used to explore the possible molecular mechanisms.As compared with nondrinkers, the multivariable-adjusted OR (95% CI) values of current drinkers consuming 7.5-22 drinks and22 drinks per week were 2.158 (1.249-3.729) and 5.373 (2.912-9.911), respectively. The rate of mucosal epithelialization after CRS surgery for patients who drank 7.5-22 drinks and22 drinks per week was lower than that of nondrinkers [HR (95% CI) = 0.487 (0.351-0.675) and 0.252 (0.184-0.346), respectively]. The association of alcohol consumption with the risk and surgical outcome of CRS was dose dependent (p .01). Alcohol consumption increased the risk of CRS and extended the time of mucosal epithelialization after CRS surgery by possibly increasing serum IgE levels (p .05).Higher alcohol consumption of7.5 drinks per week was an independent risk factor for CRS and extended the time of mucosal epithelialization after surgery. As a potential underlying mechanism, alcohol consumption increases serum IgE levels.
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- 2022
18. Author response for 'Associations of Alcohol Consumption with the Risk and Surgical Outcomes of Chronic Rhinosinusitis in China: a case‐control study'
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null Xueping Wang, null Yibin Chen, null Xiaoyuan Zhu, null Yandong Zhou, null Hongxia Su, and null Yulin Zhao
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- 2022
19. Causal Association Between Tea Consumption and Bone Health: A Mendelian Randomization Study
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Song, Chen, Tianlai, Chen, Yibin, Chen, Dianhua, Huang, Yuancheng, Pan, and Shunyou, Chen
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Nutrition and Dietetics ,Endocrinology, Diabetes and Metabolism ,Food Science - Abstract
BackgroundMuch observational research reported that tea consumption decreases the risk of osteoarthritis (OA), rheumatoid arthritis (RA), and osteoporosis (OP) which are the three major bone disorders. However, the observed correlation is inconclusive. To determine the causal relationship between genetically predicted tea intake and OA, RA, and OP, we performed a two-sample Mendelian randomization (MR) study based on large samples.MethodsThe European population’s genome-wide association meta-analysis (GWAS) dataset identified SNPs associated with tea consumption was obtained from Neale Lab’s analysis of UK Biobank data that comprised 349,376 participants of European ancestry. We extracted genetic data for knee OA (17,885 controls and 4,462 cases), hip OA (50,898 controls and 12,625 cases), and RA (43,923 controls and 14,361 cases) from the UK Biobank and OP cases (93083 controls and 1,175 cases) from FinnGen Data Freeze 2. A MR study was conducted to examine the effect of selected single nucleotide polymorphisms (SNPs) and OA, RA, and OP risk. Several sensitivity analyses were performed with weighted median and inverse-variance weighted methods for estimating the causal effects.ResultsIn this MR study, the genetically predicted per one cup increase of tea consumption was not associated with knee OA (OR 1.11,95% CI: 0.79–1.55) using IVW with random effect. Genetic predisposition to tea consumption was not associated with hip OA (OR: 1.20, 95% CI: 0.84–1.71), RA (OR: 1.24 95% CI: 0.81–1.91), and OP (OR: 1.11, 95% CI: 0.89, 1.39). Following the sensitivity analysis, there was no potential pleiotropy.ConclusionAccording to our study, According to our study, there was no statistical power to confirm a causal relationship between tea consumption and the risk of knee OA, hip OA, RA, and OP.
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- 2022
20. Robust Algorithm for Euclidean Upgrading from a Minimal Number of Segments
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Kunfeng Shi, Dongyang Zhang, Jie Zhang, Yibin Chen, and Huanlong Zhang
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- 2022
21. Elastic Stable Intramedullary Nailing and Temporary External Fixation for the Treatment of Unstable Femoral Shaft Fractures in Children Aged 5-11 Years Old: A Retrospective Study of 28 Cases
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Yunan Lu, Federico Canavese, Ran Lin, Jinchen Chen, Yibin Chen, Yuling Huang, and Shunyou Chen
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Pediatrics, Perinatology and Child Health - Abstract
PurposeUnstable femoral shaft fractures (UFSFs) in children aged 5–11 years remain challenging due to their intrinsic instability. The aim of this study was to evaluate the clinical and radiographic outcomes of UFSF in children aged 5 to 11 years managed by the combined use of ESIN and temporary EF.MethodsChildren with UFSF (long oblique and comminuted) treated by ESIN and temporary EF were retrospectively reviewed. Sex, age at injury, side involved, type of fracture, presence or absence of associated lesions or neurovascular complications, type of treatment, time from trauma to surgery, duration of surgery, radiation exposure and length of postoperative immobilization were collected from the medical charts. Radiological and functional outcomes were evaluated according to Beaty's and Flynn's criteria, respectively.ResultsA total of 28 consecutive patients with closed or open (Gustilo type I or II) UFSF were reviewed (18 boys and 10 girls). The mean age at injury was 8.7 ± 1.6 years (range, 5–11); the average weight was 38.1 ± 7.6 kg (range, 26–55). The mean hospital stay was 3.7 ± 1.4 days (range, 2–7), and the mean time to EF and ESIN removal was 6.5 ± 1.1 weeks (range, 4–8) and 9.4 ± 1.6 months (range, 6–12), respectively. Twenty-seven out of 28 patients had excellent radiographic outcomes according to Beaty's criteria, and 24/28 had excellent functional outcomes according to Flynn's criteria. Overall, 4 complications (14.3%) were recorded. No statistically significant correlation was found between complication rates and sex, age, weight or fracture characteristics (P < 0.05).ConclusionsThe combined use of ESIN and temporary EF provides good clinical and radiological outcomes in children with UFSF aged between 5 and 11 years, with a reduced complication rate.
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- 2022
22. Development of liver microtissues with functional biliary ductular network
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Basak E. Uygun, Hoda Abu-Taleb, Martin L. Yarmush, Ali El-Hindawi, Yibin Chen, Ehab O A Hafiz, Somia A. M. Soliman, Beyza Bulutoglu, and Soheir S. Mansy
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Biliary drainage ,Stromal cell ,Tissue Engineering ,Tight junction ,Chemistry ,Spheroid ,Bioengineering ,Bone canaliculus ,digestive system ,Applied Microbiology and Biotechnology ,Article ,Rats ,Cell biology ,medicine.anatomical_structure ,Liver ,Spheroids, Cellular ,Liver tissue ,Hepatocytes ,Duodenum ,medicine ,Animals ,Lobules of liver ,Bile Ducts ,Cells, Cultured ,Biotechnology - Abstract
Liver tissue engineering aims to create transplantable liver grafts that can serve as substitutes for donor's livers. One major challenge in creating a fully functional liver tissue has been to recreate the biliary drainage in an engineered liver construct through integration of bile canaliculi (BC) with the biliary ductular network that would enable the clearance of bile from the hepatocytes to the host duodenum. In this study, we show the formation of such a hepatic microtissue by coculturing rat primary hepatocytes with cholangiocytes and stromal cells. Our results indicate that within the spheroids, hepatocytes maintained viability and function for up to 7 days. Viable hepatocytes became polarized by forming BC with the presence of tight junctions. Morphologically, hepatocytes formed the core of the spheroids, while cholangiocytes resided at the periphery forming a monolayer microcysts and tubular structures extending outward. The spheroids were subsequently cultured in clusters to create a higher order ductular network resembling hepatic lobule. The cholangiocytes formed functional biliary ductular channels in between hepatic spheroids that were able to collect, transport, and secrete bile. Our results constitute the first step to recreate hepatic building blocks with biliary drainage for repopulating the whole liver scaffolds to be used as transplantable liver grafts.
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- 2020
23. Retailer-Direct Financing Contracts Under Consignment
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Diwakar Gupta and Yibin Chen
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ComputingMilieux_GENERAL ,050208 finance ,Commerce ,business.industry ,Strategy and Management ,ComputerApplications_GENERAL ,0502 economics and business ,05 social sciences ,050211 marketing ,Consignment ,Management Science and Operations Research ,business - Abstract
Problem definition: Many small businesses (suppliers) use web platforms (retailers) to sell their products on a consignment basis. Suppliers are often financially constrained, which affects their profits. Academic/practical relevance: We derive the equilibrium terms of the loan that a retailer will offer to a supplier in a consignment selling environment and their implications for supply chain efficiency. Our model is inspired by the lending program initiated by a major web platform owner. Methodology: We formulate and solve a Stackelberg game. The retailer sets loan terms that may include a debt seniority requirement. The supplier may either accept the retailer’s offer or borrow only from the bank or rely solely on its own capital. A competitively priced bank loan is the supplier’s default option. Results: There exist parameter values for which the on-equilibrium loan terms include retailer debt seniority as well as parameter values that do not. In the latter case, the supplier makes the bank the senior lender. The retailer’s debt seniority choice depends on the supplier’s working capital. When the retailer chooses to be the senior lender, its loan terms may induce the supplier to produce more than the first-best quantity. Managerial implications: Direct financing under equilibrium loan terms weakly improves the expected profits of both the retailer and the supplier. However, it may induce the supplier to produce less than or equal to or greater than the first-best production quantity. Loan limits serve to reduce overproduction.
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- 2020
24. Poly(ADP-ribosyl)ation mediates early phase histone eviction at DNA lesions
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Jiaxue Wu, Anup Kumar Singh, Xiuhua Liu, Yibin Chen, Guang Yang, Xiaochun Yu, and Shih-Hsun Chen
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DNA Repair ,AcademicSubjects/SCI00010 ,DNA damage ,DNA repair ,Poly(ADP-ribose) Polymerase Inhibitors ,Genome Integrity, Repair and Replication ,Histones ,Lesion ,Poly ADP Ribosylation ,03 medical and health sciences ,chemistry.chemical_compound ,ADP-Ribosylation ,0302 clinical medicine ,Genetics ,medicine ,Humans ,DNA Breaks, Double-Stranded ,030304 developmental biology ,Cell Nucleus ,Chromosomes, Human, X ,0303 health sciences ,biology ,FACT complex ,HCT116 Cells ,Chromatin ,Nucleosomes ,Cell biology ,Histone ,chemistry ,PARP inhibitor ,biology.protein ,medicine.symptom ,Early phase ,030217 neurology & neurosurgery ,DNA ,DNA Damage ,Molecular Chaperones - Abstract
Nucleosomal histones are barriers to the DNA repair process particularly at DNA double-strand breaks (DSBs). However, the molecular mechanism by which these histone barriers are removed from the sites of DNA damage remains elusive. Here, we have generated a single specific inducible DSB in the cells and systematically examined the histone removal process at the DNA lesion. We found that histone removal occurred immediately following DNA damage and could extend up to a range of few kilobases from the lesion. To examine the molecular mechanism underlying DNA damage-induced histone removal, we screened histone modifications and found that histone ADP-ribosylation was associated with histone removal at DNA lesions. PARP inhibitor treatment suppressed the immediate histone eviction at DNA lesions. Moreover, we examined histone chaperones and found that the FACT complex recognized ADP-ribosylated histones and mediated the removal of histones in response to DNA damage. Taken together, our results reveal a pathway that regulates early histone barrier removal at DNA lesions. It may also explain the mechanism by which PARP inhibitor regulates early DNA damage repair.
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- 2020
25. Improving perovskite solar cell performance utilizing cystamine dihydrochloride for passivating defects
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Yuelin Wei, Bin Rong, Yongheng Huang, Xia Chen, Yibin Chen, Haining Liu, Xiushen Ye, Yunfang Huang, Leqing Fan, and Jihuai Wu
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Published
- 2023
26. Running together is better than running alone: a qualitative study of a self-organised distance running group in China
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Yibin Chen, Ri Yin, and Hui Xie
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Interpersonal relationship ,Distance running ,Group (mathematics) ,Social phenomenon ,Tourism, Leisure and Hospitality Management ,Geography, Planning and Development ,Support system ,Psychology ,China ,Social psychology ,Social relation ,Qualitative research - Abstract
Group running has become a popular social phenomenon in China. Yet there is a limited understanding of running as a social and communal experience, with most of the previous studies being conducted...
- Published
- 2019
27. Molten-salt synthesis of large micron-sized YAG:Ce3+ phosphors for laser diode applications
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Yibin Chen, Haohao Wang, Langkai Li, Liangshu Wei, Meisheng Wu, and Baoliang Ma
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010302 applied physics ,Materials science ,Laser diode ,business.industry ,Process Chemistry and Technology ,Phosphor ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Laser ,01 natural sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,law.invention ,Crystallinity ,law ,0103 physical sciences ,Materials Chemistry ,Ceramics and Composites ,Optoelectronics ,Particle size ,Molten salt ,0210 nano-technology ,business ,Diode ,Eutectic system - Abstract
Large micron-sized Y3Al5O12:Ce3+ phosphors were successfully synthesized by a cost-effective method using eutectic mixtures of YF3–AlF3 as the molten-salt flux for high-power laser diodes applications. The crystallinity, morphology, particle size, thermal quenching properties of the phosphors were measured, respectively. The phosphor particle size increased with increasing amount of flux, and the medium size (D50) could reach 40 μm when adding 25 wt% YF3–AlF3. The phosphors with larger particle size did not only exhibit superior optical performances but also excellent thermal-quenching characteristics, leading to a lower surface temperature and a higher radiant efficiency when excited by a high-power laser.
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- 2019
28. Few Shot Learning for Novel Fault Diagnosis with a Improved Prototypical Network
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Yibin Chen, Ying Hong, Jianyu Long, Zhe Yang, Yunwei Huang, and Chuan Li
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- 2021
29. A Hybrid Deep Learning Model Based on LSTM for Long-term PM2.5 Prediction
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Yibin Chen, Mingyang Wu, Ruiping Tang, Shuai Chen, and Senbo Chen
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- 2021
30. Another method to calculate grain size distribution parameters: Using Ising model and particle swarm optimization algorithm
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Jiajun Mo, Qinghang Zhang, Puyue Xia, Haiwen Chen, Zeyi Lu, Haoxun Yang, Yibin Chen, Wenhao Xiao, Youhai Wang, and Min Liu
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Materials Chemistry ,General Chemistry ,Condensed Matter Physics - Published
- 2022
31. Efficiency improvement of perovskite solar cell utilizing cystamine dihydrochloride for interface modification
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Yuelin Wei, Bin Rong, Xia Chen, Yibin Chen, Haining Liu, Xiushen Ye, Yunfang Huang, Leqing Fan, and Jihuai Wu
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Published
- 2022
32. Ablation resistance of ZrC-based composite coating with multi-layer structure for carbon/carbon composites above 2200 °C
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Yunyu Li, Yichen Liu, Chen Guo, Yibin Chen, Junhao Liang, Jian Zhang, Jiaping Zhang, and Lingjun Guo
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General Chemical Engineering ,General Materials Science ,General Chemistry - Published
- 2022
33. FGF8-mediated signaling regulates tooth developmental pace during odontogenesis
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Xuefeng Hu, Linjun Li, Yibin Chen, Xiaoxiao Hu, Yanding Zhang, Yiping Chen, Chensheng Lin, and Ningsheng Ruan
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Fibroblast Growth Factor 8 ,Mesenchyme ,Growth control ,Biology ,Mice ,Phosphatidylinositol 3-Kinases ,FGF8 ,stomatognathic system ,Genetics ,medicine ,Animals ,Molecular Biology ,Mammals ,Mechanism (biology) ,Cell growth ,Mesenchymal stem cell ,Gene Expression Regulation, Developmental ,Tooth Germ ,Cell cycle ,Cell biology ,stomatognathic diseases ,medicine.anatomical_structure ,Odontogenesis ,Tooth ,Intracellular ,Signal Transduction - Abstract
The developing human and mouse teeth constitute an ideal model system to study the regulatory mechanism underlying organ growth control due to the fact that their teeth share highly conserved and well-characterized developmental processes and their developmental tempo vary notably. In the current study, we manipulated heterogenous recombination between human and mouse dental tissues and demonstrate that the dental mesenchyme dominates the tooth developmental tempo and FGF8 could be a critical player during this developmental process. Forced activation of FGF8 signaling in the dental mesenchyme of mice promoted cell proliferation, prevented cell apoptosis via p38 and perhaps PI3K-Akt intracellular signaling, and impelled the transition of the cell cycle from G1- to S-phase in the tooth germ, resulting in the slowdown of the tooth developmental pace. Our results provide compelling evidence that extrinsic signals can profoundly affect tooth developmental tempo and the dental mesenchymal FGF8 could be a pivotal factor in controlling developmental pace in a non-cell-autonomous manner during mammalian odontogenesis.
- Published
- 2021
34. Impacts of enhanced microbial-photoreductive and suppressed dark microbial reductive dissolution on the mobility of As and Fe in flooded tailing soils with zinc sulfide
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Xu Shang, Shurui Liu, Honghui Wang, Zhijie Chen, Yibin Chen, Randy A. Dahlgren, Zheng Chen, Chenghu Yang, and Guowen Dong
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General Chemical Engineering ,02 engineering and technology ,engineering.material ,010402 general chemistry ,complex mixtures ,01 natural sciences ,Industrial and Manufacturing Engineering ,Metal ,chemistry.chemical_compound ,Dissolved organic carbon ,Environmental Chemistry ,Dissolution ,biology ,General Chemistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Zinc sulfide ,0104 chemical sciences ,Bioavailability ,Sphalerite ,chemistry ,visual_art ,Environmental chemistry ,Soil water ,engineering ,visual_art.visual_art_medium ,0210 nano-technology ,Geobacter - Abstract
Semiconducting minerals are ubiquitous in soil and their association with microbes often affects the environment. In this study, the impacts of zinc sulfide (ZnS, used as a model compound for semiconducting sphalerite) on As/Fe mobility of flooded tailing soils under dark and intermittent illumination conditions were elucidated for the first time. Microbial reductive dissolution of As(V) and Fe(III) was more pronounced under intermittent illumination than under dark conditions. In ZnS-amended soils, release of As(III) and Fe(II) was 1.3 and 1.7 times higher, respectively, under intermittent illumination than the highest concentrations released from soils amended with acetate alone under dark conditions (12741.1 ± 714.3 μg/L and 37.9 ± 2.3 mg/L, respectively). However, under dark conditions in ZnS-amended soil, the release of As(III) and Fe(II) was 0.8 and 0.7 times that of the highest concentrations released from soils amended with acetate under dark conditions, respectively. Treatment with ZnS potentially decreased the abundance of several metal-reducing bacteria (e.g., Bacillus, Geobacter, Clostridium, and Desulfitobacterium), which resulted in lower As/Fe reduction than for the acetate alone treatment under dark conditions. However, under intermittent illumination, the excited mineral photoholes were scavenged by humic/fulvic acids, and photoelectrons were synchronously separated and participated in the microbial electron chain. The fortification provided by the photoelectrons subsequently boosted As/Fe reduction, even though there was a lower abundance of metal-reducing bacteria. Hence, this study provides an in-depth understanding of the impacts of semiconducting minerals on the fates of metal pollutants, microbial diversity, and the bioavailability of dissolved organic matter in flooded soils.
- Published
- 2019
35. Titanium Dioxide Nanoparticles Induced an Enhanced and Intimately Coupled Photoelectrochemical-Microbial Reductive Dissolution of As(V) and Fe(III) in Flooded Arsenic-Enriched Soils
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Chengkai Zhang, Yu Liu, Ruiwen Han, Xu Shang, Yibin Chen, Guowen Dong, Jinli Zhang, Yajing Pan, and Zheng Chen
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Mineral ,Renewable Energy, Sustainability and the Environment ,Chemistry ,General Chemical Engineering ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Chemical engineering ,Titanium dioxide ,Soil water ,Titanium dioxide nanoparticles ,Environmental Chemistry ,0210 nano-technology ,Dissolution ,Arsenic - Abstract
Nanosized titanium dioxide (TiO2) is a naturally existing nanoscale semiconducting mineral, and its co-occurrence with microbes may elicit differential environmental effects. In this study, the imp...
- Published
- 2019
36. Introducing Cuts Into a Top-Down Process for Checking Tree Inclusion
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Yangjun Chen and Yibin Chen
- Subjects
Combinatorics ,Tree (descriptive set theory) ,Computational Theory and Mathematics ,Computer science ,020204 information systems ,0202 electrical engineering, electronic engineering, information engineering ,Order (ring theory) ,02 engineering and technology ,Computer Science Applications ,Information Systems - Abstract
By the ordered tree inclusion we will check whether a pattern tree P can be included in a target tree T, where the order of siblings in both P and T matters. This problem has many applications in practice, such as retrieval of documents, data mining, and RNA structure matching. In this paper, we propose an efficient algorithm for this problem. Its time complexity is bounded by ${\text{O}(\vert }T\vert \cdot \;min\{h_{P}{,\;\vert \text{leaves(}}P)\vert \})$O(|T|·min{hP,|leaves(P)|}), with ${\text{O}(\vert }T\vert + \vert P\vert)$O(|T|+|P|) space being used, where hP (hT) represents the height of P (resp., T) and leaves (P) stands for the set of the leaves of P. Up to now the best algorithm for this problem needs $\Theta (\vert T\vert \cdot \vert leaves(P)\vert)$Θ(|T|·|leaves(P)|) time and ${\text{O}(\vert }P\vert + \vert T\vert)$O(|P|+|T|) space. Extensive experiments have been done, which show that the new algorithm can perform much better than the existing ones in practice.
- Published
- 2019
37. Expression profiles of dmrts and foxls during gonadal development and sex reversal induced by 17α-methyltestosterone in the orange-spotted grouper
- Author
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Qing-Ji Lyu, Xiaochun Liu, Yong Zhang, Minwei Huang, Yibin Chen, Herong Shi, Zeshu Yu, Jiaxing Chen, Xiankuan Yang, Huihong Zhao, Juan Hu, Huirong Yang, Ling Xiao, Qing Wang, and Yali Liu
- Subjects
Fish Proteins ,Male ,DNA, Complementary ,Orange-spotted grouper ,030209 endocrinology & metabolism ,Andrology ,03 medical and health sciences ,Sex change ,0302 clinical medicine ,Endocrinology ,Hermaphrodite ,Methyltestosterone ,Testis ,medicine ,Animals ,Tissue Distribution ,Grouper ,RNA, Messenger ,Gonads ,Phylogeny ,030304 developmental biology ,0303 health sciences ,Base Sequence ,biology ,Gene Expression Profiling ,Ovary ,Gene Expression Regulation, Developmental ,Sex Determination Processes ,Sex reversal ,biology.organism_classification ,Sexual dimorphism ,Bass ,Female ,Animal Science and Zoology ,Development of the gonads ,medicine.drug - Abstract
The orange-spotted grouper, Epinephelus coioides, is a marine protogynous hermaphrodite fish of commercial importance. There are many examples of sex change species among marine fish, but the molecular basis for the sex change is still unknown. Gonadal expression patterns of the dmrts and foxls genes in E. coioides have pointed to sexual dimorphism in this species and it has been shown that mRNA levels of dmrts and foxls to vary significantly during reproduction cycles. The steroid 17α-methyltestosterone was used to induce sex reversal in these fish, during which dmrts and foxls levels changed significantly and subsequently reverted to normal when 17α-methyltestosterone was withdrawn. Interestingly, the expression of dmrt2b and dmrt3 was not affected by this steroid. We speculate that the role of foxl2 in reproduction may be conserved via regulation of early differentiation of the ovary by the hypothalamus-pituitary-gonad axis, and dmrt2 may have a significant role in premature ovarian differentiation and maintenance in E. coioides. dmrt1 and foxl3 played a role in the development of the testes and are believed to be potential male regulatory genes.
- Published
- 2019
38. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
- Author
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de Oliveira Ehc, Luohao Xu, Ting X, Yanding Zhang, Cen W, Jing Liu, Huang H, Zhang Q, Alexander O Suh, Chen D, Peona, Zhen Huang, Furo I, Gomes Ajb, Yue Z, and Yibin Chen
- Subjects
biology ,Phylogenetic tree ,Evolutionary biology ,Budgerigar ,biology.animal ,Chromosome ,Karyotype ,Parakeet ,Gene ,Genome ,W chromosome - Abstract
The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of three parrot genomes (monk parakeet, blue-fronted amazon, budgerigar), we uncovered frequent chromosome fusions and fissions among parrots, with most of them being lineage-specific. In particular, at least 12 chromosomes recurrently experienced inter-chromosomal fusions in different parrot lineages. Two conserved vertebrate genes, ALC1 and PARP3, with known functions in the repair of double-strand breaks and maintenance of genome stability, were specifically lost in parrots. The loss of ALC1 was associated with multiple deletions and an accumulation of CR1-psi, a novel subfamily of transposable elements (TEs) that recently amplified in parrots, while the loss of PARP3 was associated with an inversion. Additionally, the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. The newly formed neo-sex chromosomes were validated by our chromosomal painting, genomic and phylogenetic analyses. Transcriptome profiling for multiple tissues of males and females did not reveal signals of female-specific selection driving the formation of neo-sex chromosomes. Finally, we identified one W-specific satellite repeat that contributed to the unusual enlargement of the W chromosome in monk parakeet. Together, the combination of our genomic and cytogenetic analyses highlight the role of TEs and genetic drift in promoting chromosome rearrangements, gene loss and the evolution of neo-sex chromosome in parrots.
- Published
- 2021
39. Compressed Sensing for Astronomical Image Compression and Denoising
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Xiaoping Shi, Huanlong Zhang, Jie Zhang, and Yibin Chen
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Noise (signal processing) ,business.industry ,Computer science ,Noise reduction ,Sampling (statistics) ,computer.file_format ,JPEG ,Compressed sensing ,Computer Science::Computer Vision and Pattern Recognition ,Compression (functional analysis) ,Curvelet ,Computer vision ,Artificial intelligence ,business ,computer ,Image compression - Abstract
In deep exploration, astronomical images are often contaminated by noise when they are transmitted to the earth by satellites. In addition, the existing compression methods are difficult to compress the image with a lower compression sampling ratio, resulting in longer image data transmission time. Donoho proposed a new sampling theory named compressed sensing (CS) in 2006, which can recover a high quality image only using a few information of original image. In this paper, CS method is employed to solve the problem of astronomical image compression, meanwhile, the CS recovery denoising algorithm based curvelet is proposed for astronomical image denoising. The experimental results show that the compression performance of CS method is superior to the famous JPEG and JPEG-2000 compression method, it can compress the high resolution astronomical image with a lower compression sampling ratio. Meanwhile, the proposed algorithm can effectively remove more noise from the noisy image, and preserves more detailed features.
- Published
- 2020
40. supplement_material - Mediating and moderating effects in golf tourism: Evidence from Hainan Island
- Author
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Huimin Song, Chen, Jamie M, and Yibin Chen
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FOS: Economics and business ,Economics ,150402 Hospitality Management - Abstract
supplement_material for Mediating and moderating effects in golf tourism: Evidence from Hainan Island by Huimin Song, Jamie M Chen and Yibin Chen in Tourism Economics
- Published
- 2020
- Full Text
- View/download PDF
41. Electron transport improvement of perovskite solar cells via intercalation of Na doped TiO2 from metal-organic framework MIL-125(Ti)
- Author
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Jihuai Wu, Yibin Chen, Yuying Ding, Leqing Fan, Xia Chen, Yuelin Wei, Yunfang Huang, Haining Liu, and Bin Rong
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Materials science ,Doping ,Intercalation (chemistry) ,Energy conversion efficiency ,General Physics and Astronomy ,Surfaces and Interfaces ,General Chemistry ,Conductivity ,Condensed Matter Physics ,Surfaces, Coatings and Films ,law.invention ,Chemical engineering ,law ,Solar cell ,Metal-organic framework ,Layer (electronics) ,Perovskite (structure) - Abstract
In this study, Na doped TiO2 (Na-TiO2) was successfully prepared using metal–organic framework (MIL-125(Ti)) as precursor. Then, the as-prepared Na-TiO2 was inserted into the interlayer between the electron transport layers and perovskite layer. As a result, the interface contact between layers has been improved effectively, leading to the enhancement of optoelectronic performance of perovskite solar cells. Compared with the traditional device, the Na-TiO2 decorated device exhibited higher quality perovskite layer with lower trap state density, higher conductivity, and better electron’s extraction and transmission. Power conversion efficiency of solar cell increased form pristine device of 17.21 % to 20.49 % with excellent reproducibility under 100 mW·cm2 illumination. The result illustrated a novel and facile method for promoting the performance of PSCs.
- Published
- 2022
42. Improving functional re-endothelialization of acellular liver scaffold using REDV cell-binding domain
- Author
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Julie Devalliere, Yibin Chen, Basak E. Uygun, Martin L. Yarmush, and Kevin Dooley
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0301 basic medicine ,Scaffold ,Endothelium ,Cell ,Biomedical Engineering ,02 engineering and technology ,Biochemistry ,Article ,Cell Line ,Biomaterials ,03 medical and health sciences ,Protein Domains ,Tissue engineering ,medicine ,Animals ,Humans ,Molecular Biology ,Decellularization ,Tissue Scaffolds ,Chemistry ,Endothelial Cells ,General Medicine ,021001 nanoscience & nanotechnology ,Fusion protein ,Rats ,Cell biology ,Endothelial stem cell ,Transplantation ,030104 developmental biology ,medicine.anatomical_structure ,Liver ,0210 nano-technology ,Oligopeptides ,Biotechnology - Abstract
Engineering of functional vascularized liver tissues holds great promise in addressing donor organ shortage for transplantation. Whole organ decellularization is a cell removal method that retains the native vascular structures of the organ such that it can be anastomosed with the recipient circulation after recellularization with healthy cells. However, a main hurdle to successful implantation of bioengineered organ is the inability to efficiently re-endothelialize the vasculature with a functional endothelium, resulting in blood clotting which is the primary cause of failure in early transplant studies. Here, we present an efficient approach for enhancing re-endothelialization of decellularized rat liver scaffolds by conjugating the REDV cell-binding domain to improve attachment of endothelial cells (EC) on vascular wall surfaces. In order to facilitate expression and purification of the peptide, REDV was fused with elastin-like peptide (ELP) that confers thermally triggered aggregation behavior to the fusion protein. After validating the adhesive properties of the REDV-ELP peptide, we covalently coupled REDV-ELP to the blood vasculature of decellularized rat livers and seeded EC using perfusion of the portal vein. We showed that REDV-ELP increased cell attachment, spreading and proliferation of EC within the construct resulting in uniform endothelial lining of the scaffold vasculature. We further observed that REDV-ELP conjugation dramatically reduced platelet adhesion and activation. Altogether, our results demonstrate that this method allowed functional re-endothelialization of liver scaffold and show great potential toward the generation of functional bioengineered liver for long-term transplantation. Statement of Significance There is a critical need for novel organ replacement therapies as the grafts for transplantation fall short of demand. Recent advances in tissue engineering, through the use of decellularized scaffolds, have opened the possibility that engineered grafts could be used as substitutes for donor livers. However, successful implantation has been challenged by the inability to create a functional vasculature. Our research study reports a new strategy to increase efficiency of endothelialization by increasing the affinity of the vascular matrix for endothelial cells. We functionalized decellularized liver scaffold using elastin-like peptides grafted with REDV cell binding domain. We showed that REDV-ELP conjugation improve endothelial cell attachment and proliferation within the scaffold, demonstrating the feasibility of re-endothelializing a whole liver vasculature using our technique.
- Published
- 2018
43. Abstract 1534: Mesothelin isoform 2 is a novel target for allogenic CARγδT cell therapy in solid tumors
- Author
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Xiaohong Wang, Leonardo Mirandola, Yibin Chen, Maurizio Chiriva-Internati, Anupama Gopisetty, Lucia Piccotti, and Quynh P. Nguyen
- Subjects
Cell therapy ,Gene isoform ,Cancer Research ,Oncology ,biology ,Chemistry ,biology.protein ,Cancer research ,Mesothelin - Abstract
Mesothelin (MSLN) is a tumor-associated antigen over-expressed on the cell surface of various malignant tumor cells, including majority of mesothelioma and ovarian cancer. MSLN-directed therapy has been intensively studied in preclinical and clinical settings. However, the clinical efficacy and safety of mesothelin-targeted therapy remains to be demonstrated. To identify a safe and effective target for CAR-T cell therapy in solid tumors, we used artificial intelligent platform developed with public and private RNA transcription database to identify cancer-associated antigens caused by alternative spicing. One of interesting targets is an alternative spicing isoform from MSLN. Human MSLN transcript has at least three isoforms. The isoform 1 is the predominant transcript detected in normal and tumor tissues and has been a promising target for cancer immunotherapy. The isoform 2 is the minor transcript using alternatively spliced exons producing 8 additional amino acids insertion compared to isoform 1. The isoform 3 produces a truncated and soluble MSLN. Our data demonstrated that MSLN isoform 2 is specifically expressed in ovarian cancers but not normal tissues, confirmed by Q-PCR studies. Furthermore, we generated mouse hybridoma antibodies specifically targeting MSLN isoform 2. The antibody specificity was screened and confirmed by ELISA-based reaction to MSLN isoform 2-specific peptide and flow cytometry-based binding to 293T cells overexpressing MSLN isoform 2 but not isoform 1 proteins. We further detected the endogenous MSLN isoform 2 expression in human mesothelioma cell line NCI H226 and further confirmed MSLN isoform 2 expression on human primary mesothelioma and ovarian cancer tissue but not normal tissues by immunohistochemistry staining. To study if targeting MSLN isoform 2 with chimeric antigen receptor (CAR) can control the tumor growth, we made CAR retrovirus construct and showed that genetically modified allogenic gamma-delta T cells expressing CAR for MSLN isoform 2 can kill human mesothelioma cells in vitro and in vivo. In summary, we have demonstrated that MSLN isoform 2 is a tumor-specific antigen, which can be targeted for CAR-T cell therapy. Citation Format: Xiaohong Wang, Yibin Chen, Anupama Gopisetty, Leonardo Mirandola, Lucia Piccotti, Quynh Nguyen, Maurizio Chiriva-Internati. Mesothelin isoform 2 is a novel target for allogenic CARγδT cell therapy in solid tumors [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 1534.
- Published
- 2021
44. Electrosynthesis of Arylsulfonamides from Amines and Sodium Sulfinates Using H2O-NaI as the Electrolyte Solution at Room Temperature
- Author
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Chen Zhang, Yibin Chen, and Gaoqing Yuan
- Subjects
Chemical substance ,010405 organic chemistry ,Supporting electrolyte ,Sodium ,Inorganic chemistry ,chemistry.chemical_element ,General Chemistry ,Electrolyte ,010402 general chemistry ,Electrosynthesis ,Electrochemistry ,01 natural sciences ,0104 chemical sciences ,law.invention ,Solvent ,Magazine ,chemistry ,law ,Organic chemistry - Abstract
With H2O as the solvent and NaI as the supporting electrolyte, a green and efficient electrochemical route has been developed to synthesize arylsulfonamides via I2 electrogenerated in situ at a graphite anode to promote the reaction of sodium sulfinates with aromatic or aliphatic primary and secondary amines. The target products could be obtained in good to excellent yields at room temperature.
- Published
- 2016
45. Luteolin Exerts Neuroprotection
- Author
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Jia He, Wanli Dong, Gang Chen, Xiang Li, Yibin Chen, Peng Zhang, Haitao Shen, Jiasheng Ding, Xin Tan, Jianguo Xu, Yan Zhang, Yi Yang, Ruming Deng, Yi-Guang Mao, and Haiying Li
- Subjects
0301 basic medicine ,autophagy ,antioxidant ,Pharmacology ,medicine.disease_cause ,Neuroprotection ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Sequestosome 1 ,Downregulation and upregulation ,In vivo ,medicine ,oxidative stress ,Pharmacology (medical) ,luteolin ,education ,Original Research ,education.field_of_study ,Chemistry ,lcsh:RM1-950 ,Autophagy ,intracerebral haemorrhage ,KEAP1 ,lcsh:Therapeutics. Pharmacology ,030104 developmental biology ,p62-Keap1-Nrf2 pathway ,030220 oncology & carcinogenesis ,Luteolin ,Oxidative stress - Abstract
Upregulation of neuronal oxidative stress is involved in the progression of secondary brain injury (SBI) following intracerebral hemorrhage (ICH). In this study, we investigated the potential effects and underlying mechanisms of luteolin on ICH-induced SBI. Autologous blood and oxyhemoglobin (OxyHb) were used to establish in vivo and in vitro models of ICH, respectively. Luteolin treatment effectively alleviated brain edema and ameliorated neurobehavioral dysfunction and memory loss in vivo. Also, in vivo, we found that luteolin promoted the activation of the sequestosome 1 (p62)/kelch‐like enoyl-coenzyme A hydratase (ECH)‐associated protein 1 (Keap1)/nuclear factor erythroid 2-related factor 2 (Nrf2) pathway by enhancing autophagy and increasing the translocation of Nrf2 to the nucleus. Meanwhile, luteolin inhibited the ubiquitination of Nrf2 and increased the expression levels of downstream antioxidant proteins, such as heme oxygenase-1 (HO-1) and reduced nicotinamide adenine dinucleotide phosphate (NADPH): quinine oxidoreductase 1 (NQO1). This effect of luteolin was also confirmed in vitro, which was reversed by the autophagy inhibitor, chloroquine (CQ). Additionally, we found that luteolin inhibited the production of neuronal mitochondrial superoxides (MitoSOX) and alleviated neuronal mitochondrial injury in vitro, as indicated via tetrachloro-tetraethylbenzimidazol carbocyanine-iodide (JC-1) staining and MitoSOX staining. Taken together, our findings demonstrate that luteolin enhances autophagy and anti-oxidative processes in both in vivo and in vitro models of ICH, and that activation of the p62-Keap1-Nrf2 pathway, is involved in such luteolin-induced neuroprotection. Hence, luteolin may represent a promising candidate for the treatment of ICH-induced SBI.
- Published
- 2019
46. Scaffolds for liver regeneration
- Author
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Ehab O A Hafiz, Sarah S. Kelangi, Maria Jaramillo, Beyza Bulutoglu, Basak E. Uygun, and Yibin Chen
- Subjects
Scaffold ,Decellularization ,Natural materials ,Tissue engineering ,business.industry ,Regeneration (biology) ,Treatment method ,Medicine ,business ,Liver regeneration ,Alternative treatment ,Cell biology - Abstract
Liver is a highly metabolically active organ that has high oxygen and nutrient demands. Even though a healthy liver has the capacity to regenerate, damage to the organ may result in mortality if the hepatic function is not supported. Because the current treatment methods for liver failure are limited, tissue engineering has offered tools to develop alternative treatment options. One common aspect of tissue engineering approaches for liver regeneration is the use of either synthetic or natural materials to provide an environment that mimics the physiological conditions and architecture of the organ. Here, we provide background on the extracellular environment in the liver and summarize materials and fabrication methods used for scaffold fabrication that support liver regeneration.
- Published
- 2019
47. Repopulation of intrahepatic bile ducts in engineered rat liver grafts
- Author
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Basak E. Uygun, Julie Devalliere, Martin L. Yarmush, Yibin Chen, and Beyza Bulutoglu
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Decellularization ,Chemistry ,Albumin ,Intrahepatic bile ducts ,Article ,Transplantation ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Hepatocyte ,Gene expression ,Parenchyma ,medicine ,Perfusion - Abstract
Engineered liver grafts for transplantation with sufficient hepatic function have been developed both in small and large animal models using the whole liver engineering approach. However, repopulation of the bile ducts in the whole liver scaffolds has not been addressed yet. In this study, we show the feasibility of repopulating the bile ducts in decellularized rat livers. Biliary epithelial cells were introduced into the bile ducts of the decellularized liver scaffolds with or without hepatocytes in the parenchymal space. The recellularized grafts were cultured under perfusion for up to 2 days and histological analysis revealed that the biliary epithelial cells formed duct-like structures, with the viable hepatocyte mass residing in the parenchymal space, in an arrangement highly comparable to the native tissue. The grafts were viable and functional as confirmed by both albumin and urea assay results and the gene expression analysis of biliary epithelial cells in recellularized liver grafts. This study provides the proof-of-concept results for rat liver grafts co-populated with parenchymal and biliary epithelial cells.
- Published
- 2019
48. List of contributors
- Author
-
Dayo O. Adewole, Elham Afjeh-Dana, Ehsaneh Daghigh Ahmadi, Nessar Ahmed, Osama A. Alkhalili, Ali Amadikuchaksaraei, Naser Amini, Moein Amoupour, Ilida Ortega Asencio, Khadijeh Ashtari, Amish Asthana, Anthony Atala, Cynthia A. Batchelder, Francois Berthiaume, Michael J. Brenner, Beyza Bulutoglu, Justin C. Burrell, Hannes Campo, Irene Cervelló, Deborah Chaimov, Munmun Chattopadhyay, Yibin Chen, Phil Coates, D. Kacy Cullen, Suradip Das, Petra de Graaf, Vincent F. de Kemp, Laetitia M.O. de Kort, Khangembam Sangeeta Devi, Rukmani Dewangan, Adam K. Ekenseair, Sarah Elzinga, Gholam Ali Farzi, Eva L. Feldman, Soon Chin Fhong, Christine Finck, Christopher Foster, Michaela Gaffley, Anil Kumar Gangwar, Carlo Gazia, Saudah Hafeji, Ehab Hafiz, Zoe Hancox, John E. Hanks, Debels Heidi, Michael D. House, Ji-Young Hwang, Maria Jaramillo, Todd Jensen, Binata Joddar, Inho Jo, Eyone Jones, Sung-Chul Jung, Ninad S. Kanetkar, Hwan June Kang, Saied Kargozar, Kritika S. Katiyar, Sarah S. Kelangi, Saeed Heidari Keshel, Seyed Ali Khaghani, Sangeeta Devi Khangembam, Han Su Kim, Bouchra Koullali, Naveen Kumar, Suneel Kumar, Vineet Kumar, Joerg Lahann, Yunki Lee, Jennifer L. Long, Renata S. Magalhaes, Swapan Kumar Maiti, Peiman Brouki Milan, Adam Mitchell, Majid Momeni-Moghadam, Masoud Mozafari, Ayșe Jane Muñiz, Chaman Naeem, Karthik Nair, Se-Young Oh, Jeremie D. Oliver, Hazem Orabi, Giuseppe Orlando, Ki Dong Park, Yoon Shin Park, Dmitriy Petrov, P.D.S. Raghuvanshi, Alireza Rezapour, Xavier Santamaria, Sonal Saxena, Wael Sayej, Farshid Sefat, Tejal Shah, Shahryar Shakeri, Ishna Sharma, Sameer Shrivastava, Carlos Simón, Ajit Kumar Singh, Karam Pal Singh, Naresh Kumar Singh, S.L. Sing, Aaron W. Stebbins, E.Y.S. Tan, Alice F. Tarantal, Nishat Tasnim, Tuğba Topal, Herminio M. Torres, George Tsachouridis, Basak E. Uygun, Krishna S. Vyas, Heather Wanczyk, Hongjun Wang, Morrison Wayne, W.Y. Yeong, Safiyya Yousaf, Mansour Youseffi, and Wei Zhang
- Published
- 2019
49. Recent advances in the roles of minerals for enhanced microbial extracellular electron transfer
- Author
-
Xiaoliang Ji, Fang Chen, Zhiying Yan, Honghui Wang, Yibin Chen, Jing Zhang, Xu Shang, Guowen Dong, Zheng Chen, and Randy A. Dahlgren
- Subjects
Electron transfer ,Extracellular polymeric substance ,Renewable Energy, Sustainability and the Environment ,Chemistry ,020209 energy ,Electron exchange ,0202 electrical engineering, electronic engineering, information engineering ,Extracellular ,Electrically conductive ,Nanotechnology ,02 engineering and technology ,Close contact - Abstract
Minerals are ubiquitous in the natural environment and have close contact with microorganisms. In various scenarios, microorganisms that harbor extracellular electron transfer (EET) capabilities have evolved a series of beneficial strategies through the mutual exchange of electrons with extracellular minerals to enhance survival and metabolism. These electron exchange interactions are highly relevant to the cycling of elements in the epigeosphere and have a profound significance in bioelectrochemical engineering applications. In this review, we summarize recent advances related to the effects of different minerals that facilitate the EET process and discuss the underlying mechanisms and outlooks for future applications. The promotional effects of minerals arise from their redox-active ability, electrical conductivity and photocatalytic capability. In mineral-promoted EET processes, various responses have concurrently arisen in microorganisms, such as stretching of electrically conductive pili (e-pili), upregulated expression of outer-membrane cytochromes (Cyts) and production of specific enzymes, and secretion of extracellular polymeric substances (EPSs). This review synthesizes the understanding of electron exchange mechanisms between microorganisms and minerals and highlights potential applications in development of renewable energy production and pollutant remediation, which are topics of particular significance to future exploitation of biotechnology.
- Published
- 2020
50. Discarded Livers Find a New Life: Engineered Liver Grafts Using Hepatocytes Recovered From Marginal Livers
- Author
-
Martin L. Yarmush, Basak E. Uygun, Yibin Chen, Maria Louisa Izamis, Maria Jaramillo, Sinan Ozer, and Gavrielle Price
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Machine perfusion ,Decellularization ,Endoplasmic reticulum ,Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,General Medicine ,Matrix (biology) ,Biology ,Liver regeneration ,Biomaterials ,Extracellular matrix ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Marginal donor ,Tissue engineering ,030220 oncology & carcinogenesis ,Immunology ,medicine - Abstract
Treatment for end-stage liver failure is restricted by the critical shortage of donor organs; about 4000 people die in the USA while waiting for a transplantable organ. This situation has been a major driving force behind the rise of tissue engineering to build artificial tissues/organs. Recent advancements in creating transplantable liver grafts using decellularized liver scaffolds bring the field closer to clinical translation. However, a source of readily available and highly functional adult hepatocytes in adequate numbers for regenerative liver therapies still remains unclear. Here, we describe a new method to utilize discarded livers to make transplantable new liver grafts. We show that marginal donor livers damaged due to warm ischemia could be treated with machine perfusion to yield 39 million viable hepatocytes per gram of liver, similar to fresh livers, and these cells could be used to repopulate decellularized liver matrix (DLM) scaffolds to make transplantable liver grafts. The hepatocytes from recovered livers sustained their characteristic epithelial morphology while they exhibited slightly lower protein synthesis functions both in plate cultures and in recellularized liver grafts. The dampened protein synthesis was attributed to residual endoplasmic reticulum stress found in recovered cells. The results here represent a unique approach to reengineer transplantable liver grafts solely from discarded organs.
- Published
- 2016
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