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Polymers that extend covalently in two dimensions have attracted recent attention as a means of combining the mechanical strength and in-plane energy conduction of conventional two-dimensional (2D) materials with the low densities, synthetic processability, and organic composition of their one-dimensional counterparts. Efforts to date have proven successful in forms that do not allow full realization of these properties, such as polymerization at flat interfaces or fixation of monomers in immobilized lattices. A frequently employed synthetic approach is to introduce microscopic reversibility, at the cost of bond stability, to achieve 2D crystals after extensive error correction. Herein we demonstrate a synthetic route to 2D irreversible polycondensation directly in the solution phase, resulting in covalently bonded 2D polymer platelets that are chemically stable and highly processable. Further fabrication offers highly oriented, free-standing films which exhibit exceptional 2D elastic modulus and yield strength at 50.9 +- 15.0 GPa and 0.976 +- 0.113 GPa, respectively. Platelet alignment is evidenced by polarized photoluminescence centered at 580 and 680 nm from different dipole transitions. This new synthetic route provides opportunities for 2D polymers in applications ranging from composite structures to molecular sieving membranes., 13 pages, 4 figures

Datasets for manuscript titled, "Ionization behavior of nanoporous polyamide membranes.", This work was supported as part of the Center for Enhanced Nanofluidic Transport (CENT), an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Basic Energy Sciences under Award #DE-SC0019112. We also acknowledge the National Science Foundation Graduate Research Fellowship awarded to C.L.R.

Vinyl carbocations have been the subject of extensive experimental and theoretical studies over the past five decades. Despite this long history in chemistry, the utility of vinyl cations in chemical synthesis has been limited, with most reactivity studies focusing on solvolysis reactions or intramolecular processes. Here we report synthetic and mechanistic studies of vinyl cations generated through silylium-weakly coordinating anion catalysis. We find that these reactive intermediates undergo mild intermolecular carbon-carbon bond-forming reactions, including carbon-hydrogen (C-H) insertion into unactivated sp3 C-H bonds and reductive Friedel-Crafts reactions with arenes. Moreover, we conducted computational studies of these alkane C-H functionalization reactions and discovered that they proceed through nonclassical, ambimodal transition structures. This reaction manifold provides a framework for the catalytic functionalization of hydrocarbons using simple ketone derivatives.

A novel bridged [2.2.1] bicyclic phosphine oxide, devised to circumvent the waste generation and burdens of purification that are typical of reactions driven by the generation of phosphine oxides, has been prepared in three steps from commercially available cyclopent-3-ene-1-carboxylic acid. The performance of this novel phosphine oxide was superior to those of current best-in-class counterparts, as verified experimentally through kinetic analysis of its silane-mediated reduction. It has been applied successfully in halide-/base-free catalytic γ-umpolung addition-Wittig olefinations of allenoates and 2-amidobenzaldehydes to produce 1,2-dihydroquinolines with good efficiency. One of the 1,2-dihydroquinoline products was converted to known antitubercular furanoquinolines.

Single-molecule detection can reveal time trajectories and reaction pathways of individual intermediates/transition states in chemical reactions and biological processes, which is of fundamental importance to elucidate their intrinsic mechanisms. We present a reliable, label-free single-molecule approach that allows us to directly explore the dynamic process of basic chemical reactions at the single-event level by using stable graphene-molecule single-molecule junctions. These junctions are constructed by covalently connecting a single molecule with a 9-fluorenone center to nanogapped graphene electrodes. For the first time, real-time single-molecule electrical measurements unambiguously show reproducible large-amplitude two-level fluctuations that are highly dependent on solvent environments in a nucleophilic addition reaction of hydroxylamine to a carbonyl group. Both theoretical simulations and ensemble experiments prove that this observation originates from the reversible transition between the reactant and a new intermediate state within a time scale of a few microseconds. These investigations open up a new route that is able to be immediately applied to probe fast single-molecule physics or biophysics with high time resolution, making an important contribution to broad fields beyond reaction chemistry.

SpnF is the first monofunctional Diels-Alder/[6+4]-ase that catalyzes a reaction leading to both Diels-Alder and [6+4] adducts through a single transition state. The environment-perturbed transition-state sampling method has been developed to calculate free energies, kinetic isotope effects, and quasi-classical reaction trajectories of enzyme-catalyzed reactions and the uncatalyzed reaction in water. Energetics calculated in this way reproduce the experiment and show that the normal Diels-Alder transition state is stabilized by H bonds with water molecules, while the ambimodal transition state is favored in the enzyme SpnF by both intramolecular hydrogen bonding and hydrophobic binding. Molecular dynamics simulations show that trajectories passing through the ambimodal transition state bifurcate to the [6+4] adduct and the Diels-Alder adduct with a ratio of 1:1 in the gas phase, 1:1.6 in water, and 1:11 in the enzyme. This example shows how an enzyme acts on a vibrational time scale to steer post-transition state trajectories toward the Diels-Alder adduct.

This thesis focuses on the study of time-resolved mechanism of organic reactions with molecular reaction dynamics simulations. Gas-phase trajectory simulations were performed on (1) dimethyldioxirane C-H oxidation, which show how polar acetone solvation favors diradical recombination, leading to the retention of stereospecificity; (2) dehydro-Diels-Alder reactions, which reveal intrinsic dynamic features for concerted and stepwise pathways, where concerted pathway involves a vibrational excitation, while stepwise pathway involves a rotational excitation; (3) cyclopentadiene dimerization, in which two-stage pathway, as originally proposed by Woodward and Katz, is involved in 13% of the reactive trajectories, presenting a typical “dynamically stepwise” feature with time gap between formation of two bonds longer than 60 fs; and (4) sixteen reactions with potential energy surface bifurcation, where a linear correlation was found between TS bond lengths and the product ratio, serving as an empirical model to assist the discovery of new bifurcating reactions, and estimate product ratio without the expense of MD simulations. The thesis reports the development of a new computational method, environment-perturbed transition state sampling, (EPTSS) to enable the study of reaction dynamics in solvent and in enzyme. EPTSS integrates the conformational sampling of solvent/enzyme and quasi-classical sampling of reacting molecules, which was inspired by Truhlar and Gao’s ensemble-average variational transition state theory. The method has been applied to (1) water-accelerated Diels-Alder reaction, which shows how water molecules dynamically participate the reaction and forms enhanced hydrogen bonds; (2) phosphoric acid-catalyzed allylboration reactions, in which an intrinsic synergy of enhancement between the CH���O and OH���O hydrogen bonds were observed, and the enhancement is diminished in toluene solvent; and (3) SpnF-catalyzed Diels-Alder reaction, which first demonstrates how enzyme dynamically control the product ratio of bifurcating reactions.

The 1-aza-2-azoniaallene salts, generated from α-chloroazo compounds by treatment with halophilic Lewis acids, undergo intramolecular C-H amination reactions to form pyrazolines in good to excellent yields. This intramolecular amination occurs readily at both benzylic and tertiary aliphatic positions and proceeds at an enantioenriched chiral center with retention of stereochemistry. Competition experiments show that insertion occurs more readily at an electron-rich benzylic position than it does at an electron-deficient one. The C-H amination reaction occurs only with certain tethers connecting the heteroallene cation and the pendant aryl groups. With a longer tether or when the reaction is intermolecular, electrophilic aromatic substitution occurs instead of C-H amination. The mechanism and origins of stereospecificity and chemoselectivity were explored with density functional theory (B3LYP and M06-2X). The 1-aza-2-azoniaallene cation undergoes C-H amination through a hydride transfer transition state to form the N-H bond, and the subsequent C-N bond formation occurs spontaneously to generate the heterocyclic product. This concerted two-stage mechanism was shown by IRC and quasi-classical molecular dynamics trajectory studies.