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We present a computational algebra solution to reverse engineering the network structure of discrete dynamical systems from data. We use monomial ideals to determine dependencies between variables that encode constraints on the possible wiring diagrams underlying the process generating the discrete-time, continuous-space data. Our work assumes that each variable is either monotone increasing or decreasing. We prove that with enough data, even in the presence of small noise, our method can reconstruct the correct unique wiring diagram., Comment: 19 pages, 5 figures

A quaternary quartic form, a quartic form in four variables, is the dual socle generator of an Artinian Gorenstein ring of codimension and regularity 4. We present a classification of quartic forms in terms of rank and powersum decompositions which corresponds to the classification by the Betti tables of the corresponding Artinian Gorenstein rings. This gives a stratification of the space of quaternary quartic forms which we compare with the Noether-Lefschetz stratification. We discuss various phenomena related to this stratification. We study the geometry of powersum varieties for a general form in each stratum. In particular, we show that the powersum variety $VSP(F,9)$ of a general quartic with singular middle catalecticant is again a quartic surface, thus giving a rational map between two divisors in the space of quartics. Finally, we provide various explicit constructions of general Artinian Gorenstein rings corresponding to each stratum and discuss their lifting to higher dimension. These provide constructions of codimension four varieties, which include canonical surfaces, Calabi-Yau threefolds and Fano fourfolds. In the particular case of quaternary quartics, our results yield answers to questions posed by Geramita, Iarrobino-Kanev, and Reid., 106 pages

A projectively normal Calabi-Yau threefold $X \subseteq \mathbb{P}^n$ has an ideal $I_X$ which is arithmetically Gorenstein, of Castelnuovo-Mumford regularity four. Such ideals have been intensively studied when $I_X$ is a complete intersection, as well as in the case where $X$ is codimension three. In the latter case, the Buchsbaum-Eisenbud theorem shows that $I_X$ is given by the Pfaffians of a skew-symmetric matrix. A number of recent papers study the situation when $I_X$ has codimension four. We prove there are 16 possible betti tables for an arithmetically Gorenstein ideal $I$ with $\mathrm{codim}(I)=4=\mathrm{reg}(I)$, and that exactly 8 of these occur for smooth irreducible nondegenerate threefolds. We investigate the situation in codimension five or more, obtaining examples of $X$ with $h^{p,q}(X)$ not among those appearing for $I_X$ of lower codimension or as complete intersections in toric Fano varieties. A key tool in our approach is the use of inverse systems to identify possible betti tables for $X$.

We study the linear syzygies of a homogeneous ideal I in a polynomial ring S, focusing on the graded betti numbers b_(i,i+1) = dim_k Tor_i(S/I, k)_(i+1). For a variety X and divisor D with S = Sym(H^0(D)*), what conditions on D ensure that b_(i,i+1) is nonzero? Eisenbud has shown that a decomposition D = A + B such that A and B have at least two sections gives rise to determinantal equations (and corresponding syzygies) in I_X; and conjectured that if I_2 is generated by quadrics of rank at most 4, then the last nonvanishing b_(i,i+1) is a consequence of such equations. We describe obstructions to this conjecture and prove a variant. The obstructions arise from toric specializations of the Rees algebra of Koszul cycles, and we give an explicit construction of toric varieties with minimal linear syzygies of arbitrarily high rank. This gives one answer to a question posed by Eisenbud and Koh about specializations of syzygies., 16 pages, 3 figures

We introduce the notion of monomial group action and study some of its consequences for Groebner basis theory. As an application we prove a conjecture of V. Batyrev and O. Popov describing the Cox rings of Del Pezzo surfaces (of degree at least 3) as quotients of a polynomial ring by an ideal generated by quadrics., 29 pages, 3 figures

This paper studies the behavior of Grobner bases with respect to extensions of scalars. We prove that an extension of scalars commutes with taking Grobner bases iff the extension is flat. We consider what information can be deduced about fibers of a family, from the Grobner basis of the defining ideal of the family itself. This information can be used to construct algorithms, such as to find locii over which a map is finite, or an isomorphism., Comment: 18 pages, LaTeX