30 results on '"Stephanie Barth"'
Search Results
2. Data from The MicroRNA Profile of Prostate Carcinoma Obtained by Deep Sequencing
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Friedrich Grässer, Bernd Wullich, Arndt Hartmann, Robert Stöhr, Wolf Wieland, Rainer Grobholz, Stephanie Barth, Gerhard Unteregger, Volker Jung, Sven Wach, Elke Löprich, and Jaroslaw Szczyrba
- Abstract
Prostate cancer is a leading cause of tumor mortality. To characterize the underlying molecular mechanisms, we have compared the microRNA (miRNA) profile of primary prostate cancers and noncancer prostate tissues using deep sequencing. MiRNAs are small noncoding RNAs of 21 to 25 nucleotides that regulate gene expression through the inhibition of protein synthesis. We find that 33 miRNAs were upregulated or downregulated >1.5-fold. The deregulation of selected miRNAs was confirmed by both Northern blotting and quantitative reverse transcription-PCR in established prostate cancer cell lines and clinical tissue samples. A computational search indicated the 3′-untranslated region (UTR) of the mRNA for myosin VI (MYO6) as a potential target for both miR-143 and miR-145, the expression of which was reduced in the tumor tissues. Upregulation of myosin VI in prostate cancer was previously shown by immunohistochemistry. The level of MYO6 mRNA was significantly induced in all primary tumor tissues compared with the nontumor tissue from the same patient. This finding was matched to the upregulation of myosin VI in established prostate cancer cell lines. In luciferase reporter analysis, we find a significant negative regulatory effect on the MYO6 3′UTR by both miR-143 and miR-145. Mutation of the potential binding sites for miR-143 and miR-145 in the MYO6 3′UTR resulted in a loss of responsiveness to the corresponding miRNA. Our data indicate that miR-143 and miR-145 are involved in the regulation of MYO6 expression and possibly in the development of prostate cancer. Mol Cancer Res; 8(4); 529–38. ©2010 AACR.
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- 2023
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3. Micro <scp>RNA</scp> ‐142 is mutated in about 20% of diffuse large <scp>B</scp> ‐cell lymphoma
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Celina Döll, Michael Hummel, Jochen Imig, Julia Alles, Stephanie Barth, Dido Lenze, Natalie Motsch, Pankaj Trivedi, Christoph Renner, Gunter Meister, Viraphong Lulitanond, Friedrich A. Grässer, Wiyada Kwanhian, and Marianne Tinguely
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rac1 GTP-Binding Protein ,Untranslated region ,Cancer Research ,medicine.medical_specialty ,Carcinogenesis ,Biology ,medicine.disease_cause ,Cell Line ,Mice ,Molecular genetics ,Gene expression ,microRNA ,genomics ,medicine ,Animals ,Humans ,Radiology, Nuclear Medicine and imaging ,RNA, Messenger ,Gene ,In Situ Hybridization, Fluorescence ,Zinc Finger E-box Binding Homeobox 2 ,Cancer Biology ,Original Research ,Homeodomain Proteins ,Genetics ,Mutation ,Base Sequence ,Zinc Finger E-box-Binding Homeobox 1 ,Sequence Analysis, DNA ,medicine.disease ,Molecular biology ,Repressor Proteins ,MicroRNAs ,HEK293 Cells ,Oncology ,cellular biology ,molecular genetics ,Lymphoma, Large B-Cell, Diffuse ,E1A-Associated p300 Protein ,Diffuse large B-cell lymphoma ,Transcription Factors - Abstract
MicroRNAs (miRNAs) are short 18–23 nucleotide long noncoding RNAs that posttranscriptionally regulate gene expression by binding to mRNA. Our previous miRNA profiling of diffuse large B-cell lymphoma (DLBCL) revealed a mutation in the seed sequence of miR-142-3p. Further analysis now showed that miR-142 was mutated in 11 (19.64%) of the 56 DLBCL cases. Of these, one case had a mutation in both alleles, with the remainder being heterozygous. Four mutations were found in the mature miR-142-5p, four in the mature miR-142-3p, and three mutations affected the miR-142 precursor. Two mutations in the seed sequence redirected miR-142-3p to the mRNA of the transcriptional repressor ZEB2 and one of them also targeted the ZEB1 mRNA. However, the other mutations in the mature miR-142-3p did not influence either the ZEB1 or ZEB2 3′ untranslated region (3′ UTR). On the other hand, the mutations affecting the seed sequence of miR-142-3p resulted in a loss of responsiveness in the 3′ UTR of the known miR-142-3p targets RAC1 and ADCY9. In contrast to the mouse p300 gene, the human p300 gene was not found to be a target for miR-142-5p. In one case with a mutation of the precursor, we observed aberrant processing of the miR-142-5p. Our data suggest that the mutations in miR-142 probably lead to a loss rather than a gain of function. This is the first report describing mutations of a miRNA gene in a large percentage of a distinct lymphoma subtype.
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- 2012
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4. The NP9 protein encoded by the human endogenous retrovirus HERV-K(HML-2) negatively regulates gene activation of the Epstein-Barr virus nuclear antigen 2 (EBNA2)
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Elisabeth Kremmer, Stephanie Barth, Marlies Sauter, Vivienne Willnecker, Vladimir Gurtsevitch, Henrik Gross, Andreas Spurk, Thorsten Pfuhl, Nikolaus Mueller-Lantzsch, Elfriede Noessner, Bin Hu, and Friedrich A. Grässer
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Gene Expression Regulation, Viral ,Transcriptional Activation ,Herpesvirus 4, Human ,Cancer Research ,Viral protein ,viruses ,Blotting, Western ,Notch signaling pathway ,Fluorescent Antibody Technique ,Repressor ,Electrophoretic Mobility Shift Assay ,Regulatory Sequences, Nucleic Acid ,Biology ,medicine.disease_cause ,Virus ,Viral Matrix Proteins ,Viral Proteins ,hemic and lymphatic diseases ,Chlorocebus aethiops ,Basic Helix-Loop-Helix Transcription Factors ,medicine ,Animals ,Humans ,Immunoprecipitation ,Lymphocytes ,Receptor, Notch1 ,Luciferases ,Promoter Regions, Genetic ,Transcription factor ,Cells, Cultured ,Cell Nucleus ,Homeodomain Proteins ,Binding Sites ,Gene Products, env ,Burkitt Lymphoma ,Molecular biology ,Raji cell ,Epstein-Barr Virus Nuclear Antigens ,Oncology ,COS Cells ,NUMB ,Transcription Factor HES-1 ,Epstein–Barr virus nuclear antigen 2 ,Protein Binding - Abstract
Epstein-Barr virus (EBV) is a human tumour virus that efficiently growth-transforms primary human B-lymphocytes in vitro. The viral nuclear antigen 2 (EBNA2) is essential for immortalisation of B-cells and stimulates viral and cellular gene expression through interaction with DNA-bound transcription factors. Like its cellular homologue Notch, it associates with the DNA-bound repressor RBPJκ (CSL/CBF1) thereby converting RBPJκ into the active state. For instance, both EBNA2 and Notch activate the cellular HES1 promoter. In EBV-transformed lymphocytes, the RNA of the NP9 protein encoded by human endogenous retrovirus HERV-K(HML-2) Type 1 is strongly up-regulated. The NP9 protein is detectable both in EBV-positive Raji cells, a Burkitt's lymphoma cell line, and in IB4, an EBV-transformed human lymphoblastoid cell line. NP9 binds to LNX that forms a complex with the Notch regulator Numb. Therefore, the function of NP9 vis-à-vis Notch and EBNA2 was analysed. Here, we show that NP9 binds to EBNA2 and negatively affects the EBNA2-mediated activation of the viral C- and LMP2A promoters. In contrast, NP9 did neither interfere in the activation of the HES1 promoter by Notch nor the induction of the viral LMP1 promoter by EBNA2. In an electrophoretic mobility shift analysis, NP9 reduced the binding of EBNA2 to DNA-bound RBPJκ by about 50%. The down-regulation of EBNA2-activity by NP9 might represent a cellular defence mechanism against viral infection or could, alternatively, represent an adaptation of the virus to prevent excessive viral protein production that might otherwise be harmful for the infected cell.
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- 2011
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5. The MicroRNA Profile of Prostate Carcinoma Obtained by Deep Sequencing
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Jaroslaw Szczyrba, Arndt Hartmann, Bernd Wullich, Rainer Grobholz, Volker Jung, Friedrich A. Grässer, Sven Wach, Elke Löprich, Wolf F. Wieland, Robert Stöhr, Gerhard Unteregger, and Stephanie Barth
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Male ,Transcriptional Activation ,PCA3 ,Cancer Research ,Down-Regulation ,Biology ,Deep sequencing ,Prostate cancer ,Prostate ,microRNA ,Gene expression ,Tumor Cells, Cultured ,medicine ,Humans ,3' Untranslated Regions ,Molecular Biology ,Regulation of gene expression ,Binding Sites ,Myosin Heavy Chains ,Gene Expression Profiling ,Carcinoma ,Prostatic Neoplasms ,medicine.disease ,Molecular biology ,Primary tumor ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,medicine.anatomical_structure ,Oncology ,Cancer research - Abstract
Prostate cancer is a leading cause of tumor mortality. To characterize the underlying molecular mechanisms, we have compared the microRNA (miRNA) profile of primary prostate cancers and noncancer prostate tissues using deep sequencing. MiRNAs are small noncoding RNAs of 21 to 25 nucleotides that regulate gene expression through the inhibition of protein synthesis. We find that 33 miRNAs were upregulated or downregulated >1.5-fold. The deregulation of selected miRNAs was confirmed by both Northern blotting and quantitative reverse transcription-PCR in established prostate cancer cell lines and clinical tissue samples. A computational search indicated the 3′-untranslated region (UTR) of the mRNA for myosin VI (MYO6) as a potential target for both miR-143 and miR-145, the expression of which was reduced in the tumor tissues. Upregulation of myosin VI in prostate cancer was previously shown by immunohistochemistry. The level of MYO6 mRNA was significantly induced in all primary tumor tissues compared with the nontumor tissue from the same patient. This finding was matched to the upregulation of myosin VI in established prostate cancer cell lines. In luciferase reporter analysis, we find a significant negative regulatory effect on the MYO6 3′UTR by both miR-143 and miR-145. Mutation of the potential binding sites for miR-143 and miR-145 in the MYO6 3′UTR resulted in a loss of responsiveness to the corresponding miRNA. Our data indicate that miR-143 and miR-145 are involved in the regulation of MYO6 expression and possibly in the development of prostate cancer. Mol Cancer Res; 8(4); 529–38. ©2010 AACR.
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- 2010
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6. Asymmetric Arginine dimethylation of Epstein–Barr virus nuclear antigen 2 promotes DNA targeting
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Michelle J. West, Henrik Gross, Ursula Zimber-Strobl, Friedrich A. Grässer, Christine Hennard, Richard D. Palermo, Elisabeth Kremmer, Stephanie Barth, and Alfredo Mamiani
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Herpesvirus 4, Human ,Arginine ,viruses ,Gene Expression ,sDMA ,Biology ,Methylation ,Article ,Cell Line ,Viral Matrix Proteins ,Epstein–Barr virus ,Mice ,Viral Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,DNA-binding ,EBV ,hemic and lymphatic diseases ,Virology ,Gene expression ,Animals ,Humans ,Promoter Regions, Genetic ,Transcription factor ,030304 developmental biology ,aDMA ,EBNA2 ,Mice, Inbred BALB C ,0303 health sciences ,030302 biochemistry & molecular biology ,Promoter ,DNA ,Nuclear antigen 2 ,Molecular biology ,Rats ,3. Good health ,Epstein-Barr Virus Nuclear Antigens ,chemistry ,Immunoglobulin J Recombination Signal Sequence-Binding Protein ,RBPJκ ,Epstein–Barr virus nuclear antigen 2 ,Oncovirus ,Protein Binding - Abstract
The Epstein-Barr virus (EBV) growth-transforms B-lymphocytes. The virus-encoded nuclear antigen 2 (EBNA2) is essential for transformation and activates gene expression by association with DNA-bound transcription factors such as RBPJkappa (CSL/CBF1). We have previously shown that EBNA2 contains symmetrically dimethylated Arginine (sDMA) residues. Deletion of the RG-repeat results in a reduced ability of the virus to immortalise B-cells. We now show that the RG repeat also contains asymmetrically dimethylated Arginines (aDMA) but neither non-methylated (NMA) Arginines nor citrulline residues. We demonstrate that only aDMA-containing EBNA2 is found in a complex with DNA-bound RBPJkappa in vitro and preferentially associates with the EBNA2-responsive EBV C, LMP1 and LMP2A promoters in vivo. Inhibition of methylation in EBV-infected cells results in reduced expression of the EBNA2-regulated viral gene LMP1, providing additional evidence that methylation is a prerequisite for DNA-binding by EBNA2 via association with the transcription factor RBPJkappa.
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- 2010
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7. Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas
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Thorsten Pfuhl, Jia Yun Zhu, John M. Nicholls, Natalie Motsch, Gunter Meister, Stephanie Barth, and Friedrich A. Grässer
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Herpesvirus 4, Human ,Cellular differentiation ,Immunology ,Nasopharyngeal neoplasm ,Biology ,medicine.disease_cause ,Microbiology ,Transformation and Oncogenesis ,RNA, Viral - biosynthesis - genetics - isolation & purification ,RNA interference ,Virology ,microRNA ,medicine ,Humans ,Gene silencing ,Cloning, Molecular ,MicroRNAs - biosynthesis - genetics - isolation & purification ,Gene ,Genetics ,Herpesvirus 4, Human - genetics ,Nasopharyngeal Neoplasms - virology ,Carcinoma ,Nasopharyngeal Neoplasms ,Sequence Analysis, DNA ,medicine.disease ,Epstein–Barr virus ,MicroRNAs ,Nasopharyngeal carcinoma ,Insect Science ,Carcinoma - virology ,RNA, Viral - Abstract
MicroRNAs (miRNAs) represent a conserved class of small noncoding RNAs that are found in all higher eukaryotes as well as some DNA viruses. miRNAs are 20 to 25 nucleotides in length and have important regulatory functions in biological processes such as embryonic development, cell differentiation, hormone secretion, and metabolism. Furthermore, miRNAs have been implicated in the pathology of various diseases, including cancer. miRNA expression profiles not only classify different types of cancer but also may even help to characterize distinct tumor stages, therefore constituting a valuable tool for prognosis. Here we report the miRNA profile of Epstein-Barr virus (EBV)-positive nasopharyngeal carcinoma (NPC) tissue samples characterized by cloning and sequencing. We found that all EBV miRNAs from the BART region are expressed in NPC tissues, whereas EBV miRNAs from the BHRF1 region are not found. Moreover, we identified two novel EBV miRNA genes originating from the BART region that have not been found in other tissues or cell lines before. We also identified three new human miRNAs which might be specific for nasopharyngeal tissues. We further show that a number of different cellular miRNAs, including miR-15a and miR-16, are upor downregulated in NPC tissues compared to control tissues. We found that the tumor suppressor BRCA-1 is a target of miR-15a as well as miR-16, suggesting a miRNA role in NPC pathogenesis. Copyright © 2009, American Society for Microbiology., link_to_OA_fulltext
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- 2009
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8. Binding of the Heterogeneous Ribonucleoprotein K (hnRNP K) to the Epstein-Barr Virus Nuclear Antigen 2 (EBNA2) Enhances Viral LMP2A Expression
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Antje Ostareck-Lederer, Nils Neuenkirchen, Elfriede Noessner, Ute Stober-Grässer, Dirk H. Ostareck, Bodo Moritz, Friedrich A. Grässer, Elisabeth Kremmer, Stephanie Barth, Alfredo Mamiani, Wen Deng, Ilias Masouris, Heinrich Leonhardt, Utz Fischer, Christine Hennard, Christian Cassel, and Henrik Gross
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Proteomics ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,viruses ,lcsh:Medicine ,Biochemistry ,Epitope ,Heterogeneous-Nuclear Ribonucleoprotein K ,Molecular cell biology ,Antibody Specificity ,hemic and lymphatic diseases ,Promoter Regions, Genetic ,lcsh:Science ,Ribonucleoprotein ,Multidisciplinary ,Spectrometric Identification of Proteins ,Antibodies, Monoclonal ,Transport protein ,Protein Transport ,Infectious Diseases ,Oncology ,Epstein–Barr virus nuclear antigen 2 ,Medicine ,Protein Binding ,Research Article ,Gene Expression Regulation, Viral ,Repetitive Sequences, Amino Acid ,Immunoprecipitation ,Molecular Sequence Data ,DNA transcription ,Biology ,Arginine ,Transfection ,Methylation ,Microbiology ,snRNP Core Proteins ,Cell Line ,Viral Matrix Proteins ,Viral Proteins ,Virology ,DNA-binding proteins ,ddc:572 ,Humans ,Protein Interactions ,Viral matrix protein ,SnRNP Core Proteins ,lcsh:R ,Proteins ,Regulatory proteins ,DNA ,Molecular biology ,Epstein-Barr Virus Nuclear Antigens ,Viruses and Cancer ,Multiprotein Complexes ,Mutant Proteins ,lcsh:Q ,Gene expression - Abstract
PLoS one 7(8), e42106 (2012). doi:10.1371/journal.pone.0042106, Published by PLoS [u.a.], Lawrence, Kan.
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- 2012
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9. MicroRNA profiling of Epstein-Barr virus-associated NK/T-cell lymphomas by deep sequencing
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Anne Dueck, Gunter Meister, Christoph Renner, Jochen Imig, Friedrich A. Grässer, Marianne Tinguely, Sergio Cogliatti, Stephanie Barth, Natalie Motsch, Tanja Reineke, Julia Alles, Jiayun Zhu, and University of Zurich
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Male ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,lcsh:Medicine ,medicine.disease_cause ,Molecular cell biology ,RNA interference ,Nucleic Acids ,Interleukin-1alpha ,hemic and lymphatic diseases ,RNA, Neoplasm ,lcsh:Science ,Cancers and neoplasms ,Non-Hodgkin lymphoma ,Regulation of gene expression ,Multidisciplinary ,Hematology ,BCL6 ,Gene Expression Regulation, Neoplastic ,Lymphoma, Extranodal NK-T-Cell ,Oncology ,Cytokines ,Medicine ,Lymphomas ,Female ,Cell Division ,Research Article ,Immunology ,Biophysics ,610 Medicine & health ,1100 General Agricultural and Biological Sciences ,Biology ,Deep sequencing ,1300 General Biochemistry, Genetics and Molecular Biology ,10049 Institute of Pathology and Molecular Pathology ,Cell Line, Tumor ,microRNA ,medicine ,Humans ,Cytokinesis ,1000 Multidisciplinary ,Sequence Analysis, RNA ,Gene Expression Profiling ,lcsh:R ,medicine.disease ,Epstein–Barr virus ,Lymphoma ,Gene expression profiling ,MicroRNAs ,Immune System ,10032 Clinic for Oncology and Hematology ,Hematologic cancers and related disorders ,Cancer research ,RNA ,Ectopic expression ,lcsh:Q ,Gene expression - Abstract
The Epstein-Barr virus (EBV) is an oncogenic human Herpes virus involved in the pathogenesis of nasal NK/T-cell lymphoma. EBV encodes microRNAs (miRNAs) and induces changes in the host cellular miRNA profile. MiRNAs are short non-coding RNAs of about 19–25 nt length that regulate gene expression by post-transcriptional mechanisms and are frequently deregulated in human malignancies including cancer. The microRNA profiles of EBV-positive NK/T-cell lymphoma, non-infected T-cell lymphoma and normal thymus were established by deep sequencing of small RNA libraries. The comparison of the EBV-positive NK/T-cell vs. EBV-negative T-cell lymphoma revealed 15 up- und 16 down-regulated miRNAs. In contrast, the majority of miRNAs was repressed in the lymphomas compared to normal tissue. We also identified 10 novel miRNAs from known precursors and two so far unknown miRNAs. The sequencing results were confirmed for selected miRNAs by quantitative Real-Time PCR (qRT-PCR). We show that the proinflammatory cytokine interleukin 1 alpha (IL1A) is a target for miR-142-3p and the oncogenic BCL6 for miR-205. MiR-142-3p is down-regulated in the EBV-positive vs. EBV-negative lymphomas. MiR-205 was undetectable in EBV-negative lymphoma and strongly down-regulated in EBV-positive NK/T-cell lymphoma as compared to thymus. The targets were confirmed by reporter assays and by down-regulation of the proteins by ectopic expression of the cognate miRNAs. Taken together, our findings demonstrate the relevance of deregulated miRNAs for the post-transcriptional gene regulation in nasal NK/T-cell lymphomas.
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- 2012
10. EBV-encoded miRNAs
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Stephanie Barth, Friedrich A. Grässer, and Gunter Meister
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Gene Expression Regulation, Viral ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,Lymphoma ,viruses ,Biophysics ,Biology ,medicine.disease_cause ,Biochemistry ,Virus ,Structural Biology ,microRNA ,Genetics ,medicine ,Gene silencing ,Animals ,Humans ,Gene Silencing ,Molecular Biology ,Regulation of gene expression ,Innate immune system ,Models, Genetic ,Carcinoma ,Epstein–Barr virus ,Microvesicles ,MicroRNAs ,Cancer research ,Carcinogenesis - Abstract
The Epstein-Barr virus (EBV) is an oncogenic Herpes virus involved in the induction of a variety of human tumours. It was the first virus found to encode microRNAs (miRNAs). MiRNAs are short, non-coding RNAs that in most cases negatively regulate gene expression at the post-transcriptional level. EBV-transformed cells express at least 44 mature viral miRNAs that target viral and cellular genes. In addition, EBV-infection severely deregulates the miRNA profile of the host cell. The presently available information indicates that the virus uses its miRNAs to inhibit the apoptotic response of the infected cell as a means to establish a latent infection. Likewise, EBV-encoded miRNAs interfere in the expression of viral genes in order to mask the infected cell from the immune response. Cellular targets of viral miRNAs are involved in protein traffic within the cell and regulate innate immunity. MiRNA profiling of diffuse large B-cell lymphoma (DLBCL) and nasal NK/T-cell lymphoma (NKTL) showed that only 2% of the miRNAs are derived from the virus, while viral miRNAs comprise up to 20% of the total miRNA in nasopharyngeal carcinoma (NPC) and probably contribute to the formation or maintenance of NPC. The presence of viral miRNAs in exosomes raises the fascinating possibility that virus-infected cells regulate gene expression in the surrounding tissue to avert destruction by the immune system. This article is part of a Special Issue entitled: MicroRNAs in viral gene regulation.
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- 2011
11. microRNA profiling in Epstein-Barr virus-associated B-cell lymphoma
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Jochen Imig, Jia Yun Zhu, Christoph Renner, Natalie Motsch, Friedrich A. Grässer, Alberto Faggioni, Tanja Reineke, Michal J. Okoniewski, Gunter Meister, Marianne Tinguely, Stephanie Barth, Pankaj Trivedi, Institute of Virology, Universität des Saarlandes [Saarbrücken], Center for Integrated Protein Sciences Munich (CIPSM), Max Planck Institute of Biochemistry (MPIB), Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Functional Genomics Center Zurich, Institute of Surgical Pathology, University hospital of Zurich [Zurich], Department of Experimental Medicine [Roma], Institut Pasteur, Fondation Cenci Bolognetti - Istituto Pasteur Italia, Fondazione Cenci Bolognetti, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Regensburg University, Biochemistry I, Division of Oncology, Department of Internal Medicine-Oncology, Deutsche Krebshilfe (grant 107166 to G.M. and F.G.), German Bundesministerium fur Bildung und Forschung (grant NGFN to S.B. and #01GS0801/4 to F.G.), Max-Planck-Society (to Meister lab, partial), German Bundesministerium fur Bildung und Forschung (grant NGFN-Plus #01GS0801/5 to G.M.), Bavarian Ministry for Education and Science (BayGene to G.M.), MIUR, AIRC, Progetto strategico (ISS9ACF/1) and FISM (2007/R/17) (to A.F. and P.T.). Funding for open access charge: Grant 107166 from the Deutsche Krebshilfe (to G.M. and F.G.) Grant NGFN-Plus #01GS0801/4 from the German Ministry of Education (to F.G.)., and University of Zurich
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Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,MESH: beta Catenin ,medicine.disease_cause ,0302 clinical medicine ,hemic and lymphatic diseases ,MESH: Reverse Transcriptase Polymerase Chain Reaction ,Nuclear protein ,B-cell lymphoma ,beta Catenin ,0303 health sciences ,MESH: Epstein-Barr Virus Infections ,Reverse Transcriptase Polymerase Chain Reaction ,Nuclear Proteins ,MESH: Gene Expression Regulation, Neoplastic ,MESH: RNA, Small Untranslated ,3. Good health ,DNA-Binding Proteins ,Gene Expression Regulation, Neoplastic ,MESH: Wnt Proteins ,030220 oncology & carcinogenesis ,Lymphoma, Large B-Cell, Diffuse ,Ubiquitin-Protein Ligases ,610 Medicine & health ,10071 Functional Genomics Center Zurich ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,MESH: Molecular Sequence Annotation ,Biology ,Cell Line ,MESH: Proto-Oncogene Proteins c-myb ,Proto-Oncogene Proteins c-myb ,03 medical and health sciences ,MESH: Gene Expression Profiling ,1311 Genetics ,Downregulation and upregulation ,10049 Institute of Pathology and Molecular Pathology ,Proto-Oncogene Proteins ,microRNA ,MESH: Gene Library ,Genetics ,medicine ,Humans ,Epstein–Barr virus infection ,Gene Library ,030304 developmental biology ,Binding Sites ,MESH: Humans ,Gene Expression Profiling ,Molecular Sequence Annotation ,MESH: Herpesvirus 4, Human ,medicine.disease ,Epstein–Barr virus ,Molecular biology ,MESH: Ubiquitin-Protein Ligases ,MESH: Cell Line ,Wnt Proteins ,MESH: Proto-Oncogene Proteins ,MicroRNAs ,MESH: Binding Sites ,10032 Clinic for Oncology and Hematology ,Cancer research ,570 Life sciences ,biology ,RNA, Small Untranslated ,RNA ,MESH: Lymphoma, Large B-Cell, Diffuse ,Carcinogenesis ,Diffuse large B-cell lymphoma ,MESH: MicroRNAs ,MESH: Nuclear Proteins ,MESH: DNA-Binding Proteins - Abstract
The Epstein–Barr virus (EBV) is an oncogenic human Herpes virus found in ∼15% of diffuse large B-cell lymphoma (DLBCL). EBV encodes miRNAs and induces changes in the cellular miRNA profile of infected cells. MiRNAs are small, non-coding RNAs of ∼19–26 nt which suppress protein synthesis by inducing translational arrest or mRNA degradation. Here, we report a comprehensive miRNA-profiling study and show that hsa-miR-424, -223, -199a-3p, -199a-5p, -27b, -378, -26b, -23a, -23b were upregulated and hsa-miR-155, -20b, -221, -151-3p, -222, -29b/c, -106a were downregulated more than 2-fold due to EBV-infection of DLBCL. All known EBV miRNAs with the exception of the BHRF1 cluster as well as EBV-miR-BART15 and -20 were present. A computational analysis indicated potential targets such as c-MYB, LATS2, c-SKI and SIAH1. We show that c-MYB is targeted by miR-155 and miR-424, that the tumor suppressor SIAH1 is targeted by miR-424, and that c-SKI is potentially regulated by miR-155. Downregulation of SIAH1 protein in DLBCL was demonstrated by immunohistochemistry. The inhibition of SIAH1 is in line with the notion that EBV impedes various pro-apoptotic pathways during tumorigenesis. The down-modulation of the oncogenic c-MYB protein, although counter-intuitive, might be explained by its tight regulation in developmental processes. ISSN:1362-4962 ISSN:0301-5610
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- 2011
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12. Expression of neuropeptide Y, omentin and visfatin in visceral and subcutaneous adipose tissues in humans: relation to endocrine and clinical parameters
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Thomas Horbach, Jörg Dötsch, Ina Knerr, Peter Klein, Stephanie Barth, Manfred Rauh, and Wolfgang Rascher
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Adult ,Male ,medicine.medical_specialty ,Health (social science) ,Hydrocortisone ,Urinary system ,Medizinische Fakultät -ohne weitere Spezifikation ,Subcutaneous Fat ,Adipose tissue ,Gene Expression ,Endocrine System ,White adipose tissue ,Intra-Abdominal Fat ,GPI-Linked Proteins ,Physiology (medical) ,Internal medicine ,Lectins ,mental disorders ,Endocrine system ,Medicine ,Humans ,Neuropeptide Y ,ddc:610 ,Obesity ,Nicotinamide Phosphoribosyltransferase ,business.industry ,Radioimmunoassay ,Middle Aged ,Neuropeptide Y receptor ,humanities ,Endocrinology ,Cytokines ,Female ,Original Article ,business ,Glucocorticoid ,medicine.drug ,Hormone - Abstract
Objective: We aimed at exploring the expression of neuropeptide Y (NPY), omentin and visfatin in adipose tissues of adults along with clinical parameters and hormones. Methods: We included 168 adult patients (31 surgical obese patients and 31 surgical controls, 76 non-surgical obese patients, 30 non-surgical controls). We measured plasma NPY (by radioimmunoassay), cortisol (with an electrochemiluminescence immunoassay) and urinary cortisol metabolites (by gas chromatography/ mass spectrometry). Expression of NPY, omentin and visfatin in subcutaneous and visceral adipose tissue specimens of the surgical patients was quantified using real-time PCR. Results: NPY was detectable in adipose tissue specimens and, like plasma NPY concentrations, comparable between groups. Omentin gene expression was higher in visceral than in subcutaneous adipose tissues (p < 0.0001). Visfatin expression was lower in the subcutaneous tissue of obese patients compared with controls (p < 0.05). Cortisol was lower in obese adults compared with controls (136.5 ± 74.1 vs. 162.2 ± 56.1 ng/ml; p < 0.05), cortisol metabolites were comparable between groups. Conclusion: In our obese adults, plasma NPY levels and the glucocorticoid measures were not elevated. Even though the expression of NPY, omentin and visfatin was comparable between obese individuals and controls, we have to consider differences in the total production rate of adipose tissue-derived factors.
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- 2010
13. The LARK/RBM4a protein is highly expressed in cerebellum as compared to cerebrum
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Peter Falkai, Andrea Schmitt, Johanna Stieber, Thorsten Pfuhl, Susanne Welter, Volker Jung, Thomas Dobner, Friedrich A. Grässer, Jasmin Ankara, Matthias Dürr, Michael Liss, Alfredo Mamiani, Elisabeth Kremmer, and Stephanie Barth
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Time Factors ,RISC complex ,Tau protein ,Biology ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Cerebellum ,Animals ,Humans ,Gene ,Cerebrum ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,General Neuroscience ,Alternative splicing ,RNA ,RNA-Binding Proteins ,Molecular biology ,Amino acid ,Rats ,Up-Regulation ,chemistry ,RNA splicing ,biology.protein ,Rabbits ,030217 neurology & neurosurgery ,Epitope Mapping ,Half-Life ,HeLa Cells - Abstract
The RNA binding motif protein 4 genes RBM4a and RBM4b are located on human chromosome 11q13.2 and encode highly similar proteins of 363 and 359 amino acids, respectively. They contain two RNA recognition motifs (RRMs) and a retroviral-type Zn-finger. RBM4a binds RNA, is involved in alternative splicing and is also a part of the microRNA-processing RISC complex. In particular, RBM4a is involved in exon 10 inclusion of the tau protein. The function of RBM4b is unknown. With new monoclonal antibodies we show that RBM4a is detectable in virtually all tissues and cell lines tested while RBM4b was only found in kidney and liver. Both RBM4a and RBM4b are nuclear phosphoproteins with half-lives of 2.5 h and 4.5 h, respectively. To our knowledge, this is the first description of RBM4b protein in human tissue. In human brain, expression of RBM4a was strongly up-regulated in cerebellum as compared to forebrain.
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- 2008
14. Epstein-Barr virus-encoded latent membrane protein 1 (LMP1) induces the expression of the cellular microRNA miR-146a
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Natalie Motsch, Thorsten Pfuhl, Jan Mrazek, Friedrich A. Grässer, and Stephanie Barth
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Gene Expression Regulation, Viral ,Herpesvirus 4, Human ,Mutant ,Molecular Sequence Data ,Biology ,medicine.disease_cause ,Virus ,Cell Line ,Viral Matrix Proteins ,Cell Line, Tumor ,microRNA ,Virus latency ,medicine ,Gene silencing ,Humans ,Molecular Biology ,Cell Line, Transformed ,B-Lymphocytes ,Innate immune system ,Base Sequence ,NF-kappa B ,Cell Biology ,medicine.disease ,Epstein–Barr virus ,Molecular biology ,Burkitt Lymphoma ,Virus Latency ,MicroRNAs ,Cell culture - Abstract
MicroRNAs (miRNAs) are involved in sequence-specific cleavage, translational repression or deadenylation of specific target mRNAs resulting in post-transcriptional gene silencing. Epstein-Barr Virus (EBV) infection induces cellular non-coding (nc)RNAs e.g., the "vault" RNAs or miRNAs such as miR-21, miR-155 or miR-146a. MiR-146a is upregulated in various tumours and plays a role in innate immunity. We show that the EBV-encoded latent membrane protein 1 (LMP1) induces the expression of miR-146a via NFkappaB. LMP1 activates the miR-146a promoter but not a promoter with a mutation of the NFkappaB-response elements. Conversely, a LMP1-mutant deficient in NFkappaB-activation failed to activate the promoter. The "CAO"-LMP1 variant which has an increased potential to induce NFkappaB also showed a higher ability to activate the miR-146a promoter as compared to standard B95.8-LMP1. Northern blotting revealed high levels of miR-146a and miR-155 in the Burkitt's lymphoma cell line Jijoye which expresses LMP1 while the LMP1-deficient P3HR1 mutant derived from Jijoye expresses less miR-146a or miR-155. Likewise, EBV-latency type I Burkitt's lymphoma cells with low LMP1 levels also contain low levels of either miR-146a or miR-155 while their levels are increased in LMP1-expressing EBV-latency type III BL cells. Expression of LMP1 in P3HR1 cells upregulates miR-146a levels. Neither miR-146a nor miR-155 are detectable in BCBL-1 cells transformed by the Kaposi-Sarcoma Herpes virus (KSHV/HHV8). It is possible that the induction of miR-146a plays a role in the induction or maintenance of EBV latency by modulating innate immune responses to the virus infected host cell.
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- 2008
15. Epstein–Barr virus-encoded microRNA miR-BART2 down-regulates the viral DNA polymerase BALF5
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Christoph Jäker, Klaus Roemer, Gunter Meister, Friedrich A. Grässer, Claudia Ehses, Thorsten Pfuhl, Julia Höck, Alfredo Mamiani, Elisabeth Kremmer, and Stephanie Barth
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Gene Expression Regulation, Viral ,Herpesvirus 4, Human ,Down-Regulation ,DNA-Directed DNA Polymerase ,medicine.disease_cause ,Virus Replication ,Virus ,Cell Line ,Viral Proteins ,RNA interference ,microRNA ,Genetics ,medicine ,Gene silencing ,Animals ,Humans ,Luciferases ,3' Untranslated Regions ,Polymerase ,biology ,Epstein–Barr virus ,Molecular biology ,Rats ,DNA-Binding Proteins ,MicroRNAs ,Viral replication ,Lytic cycle ,biology.protein ,RNA ,RNA Interference - Abstract
MicroRNAs (miRNAs) have been implicated in sequence-specific cleavage, translational repression or deadenylation of specific target mRNAs resulting in post-transcriptional gene silencing. Epstein-Barr virus (EBV) encodes 23 miRNAs of unknown function. Here we show that the EBV-encoded miRNA miR-BART2 down-regulates the viral DNA polymerase BALF5. MiR-BART2 guides cleavage within the 3'-untranslated region (3'UTR) of BALF5 by virtue of its complete complementarity to its target. Induction of the lytic viral replication cycle results in a reduction of the level of miR-BART2 with a strong concomitant decrease of cleavage of the BALF5 3'UTR. Expression of miR-BART2 down-regulates the activity of a luciferase reporter gene containing the BALF5 3'UTR. Forced expression of miR-BART2 during lytic replication resulted in a 40-50% reduction of the level of BALF5 protein and a 20% reduction of the amount of virus released from EBV-infected cells. Our results are compatible with the notion that EBV-miR-BART2 inhibits transition from latent to lytic viral replication.
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- 2008
16. RNA-Dependent Gene Silencing and Epigenetics in Animals
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Jörn Walter, Stephanie Barth, Martina Paulsen, and Sascha Tierling
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RNA interference ,fungi ,microRNA ,RNA ,Gene silencing ,Epigenetics ,Biology ,Genome ,Gene ,Cell biology ,Antisense RNA - Abstract
In animals noncoding RNAs are involved in a large variety of gene silencing mechanisms. These include post-transcriptional RNA interference (RNAi) that is mediated by small double-stranded RNAs and results in degradation of messenger RNAs as well as epigenetic silencing of genes. RNAi as a naturally occurring silencing mechanism has been well investigated in various eukaryotic organisms. Sequencing of the human and mouse genomes and careful analyses of the related transcriptomes led to the identification of some hundred microRNAs that might regulate endogenous gene expression by RNAi-like mechanisms or repression of translation. In mammals the major protein components of the RNAi machinery have been identified, and RNAi has become a tool for artificial gene silencing in mammalian systems. There is also evidence that in mammalian cells genes can be regulated by noncoding antisense transcripts that are transcribed from the opposite DNA strand. Besides their potential roles in RNAi and repression of translation, short double-stranded RNAs and also long noncoding RNAs are involved in epigenetic gene silencing. In this chapter we give an overview of prominent features of naturally occurring RNAi and also of the potential role of RNAs in epigenetic gene silencing mechanisms in animals, especially in mammals.
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- 2006
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17. Epstein-Barr Virus Nuclear Antigen 2 Binds via Its Methylated Arginine-Glycine Repeat to the Survival Motor Neuron Protein
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Utz Fischer, Thomas Dobner, Gunter Meister, Friedrich A. Grässer, Stephanie Barth, Marc D. Voss, and Michael Liss
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Gene Expression Regulation, Viral ,Herpesvirus 4, Human ,Tudor domain ,Arginine ,viruses ,Immunology ,Mutant ,Glycine ,RNA-binding protein ,Nerve Tissue Proteins ,Biology ,Microbiology ,Methylation ,Viral Proteins ,SMN Complex Proteins ,immune system diseases ,Virology ,hemic and lymphatic diseases ,Humans ,Cyclic AMP Response Element-Binding Protein ,Cell Line, Transformed ,Repetitive Sequences, Nucleic Acid ,virus diseases ,RNA-Binding Proteins ,biochemical phenomena, metabolism, and nutrition ,Cell Transformation, Viral ,Molecular biology ,Fusion protein ,Precipitin Tests ,Virus-Cell Interactions ,Epstein-Barr Virus Nuclear Antigens ,Insect Science ,Epstein–Barr virus nuclear antigen 2 ,HeLa Cells - Abstract
Here we provide evidence that EBNA2 is methylated in vivo and that methylation of EBNA2 is a prerequisite for binding to SMN. We present SMN as a novel binding partner of EBNA2 by showing that EBNA2 colocalizes with SMN in nuclear gems and that both proteins can be coimmunoprecipitated from cellular extract. Furthermore, in vitro methylation of either wild-type EBNA2 or a glutathione S -transferase-EBNA2 fusion protein encompassing the arginine-glycine (RG) repeat element is necessary for in vitro binding to the Tudor domain of SMN. The recently shown functional cooperation of SMN and EBNA2 in transcriptional activation and the previous observation of a severely reduced transformation potential yet strongly enhanced transcriptional activity of an EBNA2 mutant lacking the RG repeat indicate that binding of SMN to EBNA2 is a critical step in B-cell transformation by Epstein-Barr virus.
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- 2003
18. Functional Cooperation of Epstein-Barr Virus Nuclear Antigen 2 and the Survival Motor Neuron Protein in Transactivation of the Viral LMP1 Promoter
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Marc D. Voss, Daniela Holzer, Nikolaus Mueller-Lantzsch, Elisabeth Kremmer, Annette Hille, Andreas Spurk, Stephanie Barth, Friedrich A. Grässer, and Frank Hennrich
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Transcriptional Activation ,Tudor domain ,viruses ,animal diseases ,Immunology ,Fluorescent Antibody Technique ,RNA-binding protein ,Nerve Tissue Proteins ,Biology ,Microbiology ,Cell Line ,Viral Matrix Proteins ,Transactivation ,Viral Proteins ,SMN complex ,Transcription (biology) ,SMN Complex Proteins ,Virology ,hemic and lymphatic diseases ,Transcriptional regulation ,Humans ,Cyclic AMP Response Element-Binding Protein ,Promoter Regions, Genetic ,DNA Primers ,Base Sequence ,RNA-Binding Proteins ,Molecular biology ,nervous system diseases ,Virus-Cell Interactions ,nervous system ,Epstein-Barr Virus Nuclear Antigens ,Insect Science ,Epstein–Barr virus nuclear antigen 2 - Abstract
The Epstein-Barr virus (EBV) causes infectious mononucleosis and is linked to the genesis of several human lymphoproliferative diseases (for a review, see reference 33). The EBV-encoded nuclear antigen 2 (EBNA2) is a viral transactivator essential for EBV-induced transformation of resting human B lymphocytes, by promoting the expression of the transforming latent membrane proteins LMP1 and 2, the nuclear EBV Cp promoter-driven EBNA proteins, and the cellular genes CD23 and c-fgr (for review, see reference 15). EBNA2 does not bind directly to DNA but exerts its function by interacting with the cellular proteins RBPJκ (CBF1) and, on the more complex LMP1 promoter, also Spi1 (PU.1), tethered to cognate response elements (12, 17, 20, 45, 46). Transcriptional activation is induced by binding of the C-terminal acidic domain (5) to components of the basal RNA polymerase II transcription machinery, such as RPA70, TAF40, TFIIB, and TFIIH (38, 39), and recruitment of the coactivators p300, CBP, and PCAF histone deacetylase (14, 41). In addition, by attracting the hSWI/SNF complex (42, 43) and targeting histone H1 (9, 34), EBNA2 likely promotes relief of nucleosome-mediated gene repression. We have recently shown that EBNA2 binds to DP103, a novel member of the DEAD-box family of putative RNA helicases (10). DP103 is a ubiquitously expressed 103-kDa phosphoprotein with an RNA-dependent ATPase activity; its other functions, in particular with regard to its interaction with EBNA2, remained unknown. While the work presented here was in progress, an interaction of DP103 (alternatively called Gemin3 [2]) and the survival motor neuron (SMN) protein, and their respective murine homologues, were described in two independent studies (1, 2). SMN is part of a multiprotein complex containing SIP1, DP103 (Gemin3), GIP1 (Gemin4), and several Sm proteins that is involved in the assembly and nuclear regeneration of snRNPs and spliceosomes (2, 7, 25, 31). Both SMN and DP103 are localized in the cytoplasm and distinct nuclear structures, described as coiled bodies and gems (gemini of coiled bodies) (2, 21, 31). Mutations in the SMN gene result in spinal muscular atrophy (SMA), a recessive genetic disease with loss of α-motor neurons in the spinal cord, leading to muscle weakness and subsequent death. The SMN gene exists in two inverted copies within the same chromosomal region on chromosome 5q13 (19). In most SMA patients, a mutated telomeric form of the SMN gene results in a nonfunctional exon 7-deleted SMN, unable to self-associate (22), which cannot be compensated by the low amounts of full-length SMN protein expressed from the centromeric allele (24). In a few cases of SMA, point mutations were described which exchange amino acid (aa) 272 (Y272C) (19) or aa 134 (E134K) (4), affecting a putative RNA binding tudor domain (26). Furthermore, knockout of the murine SMN gene or its yeast homologue Yab8p resulted in a lethal phenotype (11, 28, 35). Interestingly, a role for SMN in transcriptional regulation has been implicated, since SMN was shown to interact with the bovine papillomavirus E2 transactivator and to coactivate an E2-responsive viral promoter (1, 36). Furthermore, Ou et al. demonstrated that murine dp103 is also involved in transcriptional regulation by negatively modulating the expression of steroidogenic factor-1 (27). Finally, the SMN complex has recently been shown to associate with the C-terminal domain (CTD) of RNA polymerase II (30), although the functional consequences of this interaction have not yet been elucidated. Searching for DP103-associated cellular proteins by using the yeast two-hybrid system, we also identified SMN as an interaction partner of DP103. Here, we show that this interaction is also relevant in B cells and that SMN is able to coactivate the viral LMP1 promoter in the presence of EBNA2 in vitro and in vivo. Data obtained from analyzing different EBNA2, DP103, and SMN mutants regarding their binding domains, subcellular distribution, and influence on EBNA2-mediated transactivation suggest that SMN is a novel factor involved in EBNA2-mediated transactivation of the viral LMP1 promoter: by targeting of DP103 within spliceosomal complexes, EBNA2 subsequently releases transcriptionally active SMN, which functions as a coactivator, likely within the RNA polymerase II transcription complex.
- Published
- 2001
19. Allgemeine Zielsetzung
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Stephanie Barth
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- 1995
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20. Existenzgründer in den neuen Bundesländern
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Stephanie Barth
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- 1995
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21. Durchführung der Untersuchung
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Stephanie Barth
- Abstract
Da es auf dem Gebiet der Existenzgrundungsforschung, das sich mit der Person des Existenzgrunders und deren Wirkung auf den Grundungserfolg befast, bisher nur wenig gesichertes empirisches Wissen gibt, bietet dieses Feld interessante Forschungsmoglichkeiten. Der Ansatz, der hier zur Untersuchung dieser Fragestellung gewahlt wurde, ist interdisziplinar zwischen Betriebswirtschaftslehre und Psychologie angesiedelt. Es handelt sich quasi um die Charakterisierung und Messung einer psychologischen Komponente in einer betriebswirtschaftlichen Fragestellung, namlich im Bereich der Grundung einer wirtschaftlich selbstandigen Existenz.
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- 1995
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22. Ergebnisse
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Stephanie Barth
- Published
- 1995
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23. Schwerpunkte der Gründungsforschung
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Stephanie Barth
- Abstract
Im folgenden soll ein kurzer Uberblick uber Inhalte der Grundungsforschung im allgemeinen gegeben werden, bevor im nachsten Kapitel eine Beschrankung auf die vorhandenen Ergebnisse im Bereich der Grunderperson erfolgt. Dabei wird vor allem auch aufgrund der hohen Zahl der Veroffentlichungen besonders auf die USA Bezug genommen1). Insgesamt existieren bisher vor allem empirische Beobachtungen, jedoch gibt es keine theoretische Fundierung, die Ergebnisse zusammenfast und die man daher als geschlossene Theorie der Existenzgrundung2) bezeichnen kann3).
- Published
- 1995
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24. Definition einzelner Variablenkonzepte
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Stephanie Barth
- Subjects
Political science ,Context (language use) ,Humanities - Abstract
Im Laufe der Jahre und der Entwicklung der Wirtschaftstheorie gab es viele unterschiedliche Definitionen und Auslegungen1) der Begriffe “entrepreneur” und “Existenzgrunder”. Es existiert jedoch bisher keine allgemeingultige Definition2). So stellt Sandberg fest: “The definition of “the entrepreneur” and the conception of the entrepreneurial role in a social economic or corporate context have remained slippery and elusive. Economists have not reached a consensus on these points and thus have not provided a common understanding...”3).
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- 1995
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25. Ausblick
- Author
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Stephanie Barth
- Published
- 1995
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26. Problematisierung und Bedeutung des Themas
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Stephanie Barth
- Abstract
Betrachtet man die okonomische Situation der Bundesrepublik Deutschland als ein weitgehend rohstoffarmes Land, mit uberwiegend qualifizierten, aber auch teuren Arbeitskraften, das sich unter den Rahmenbedingungen der internationalen Arbeitsteilung seine Wettbewerbsfahigkeit erhalten mus und daher auf einen dauernden Strukturwandel angewiesen ist, hat die Grundungsforschung eine herausragende Bedeutung. Die Grunde fur die Notwendigkeit von Existenzgrundungen lassen sich unmittelbar aus der volkswirtschaftlichen Zielsetzung, die, um die Vorteile der hohen Qualifikation der Arbeitskrafte und des vorhandenden Kapitals zum Ausdruck zu bringen, in einer hoheren Innovationskraft zur Herstellung technisch hochwertiger und umweltfreundlicher Produkte bestehen mus, ableiten. Neugegrundete Unternehmen leisten einen wichtigen Beitrag zum Wachstum, Strukturwandel, Wettbewerb und zur Beschaftigung einer Volkswirtschaft1). Ihre Auswirkungen zeigen sich weiter auf dem ordnungspolitischen Gebiet durch Dynamisierung und Erhaltung des Wettbewerbs und auf den sozialen Bereich durch eine Auflockerung der sozialen Schichten2). Dabei hangt das Ausmas der Erneuerungskraft allerdings davon ab, inwieweit sich Existenzgrunder erfolgreich durchsetzen konnen. Ihr Vorteil ist, das sie schneller als bestehende Grosunternehmen in der Lage sind, sich den wechselnden Anforderungen des Marktes anzupassen. “Aber nicht nur kreative, auch imitierende bzw. traditionelle Unternehmensgrundungen tragen zum Abbau von Arbeitslosigkeit und wirtschaftlichen Wachstum bei. Indem sie in wachsende Wirtschaftszweige vorstosen, helfen sie, den technischen Fortschritt zu verallgemeinern und Strukturprobleme zu uberwinden. Daruber hinaus verschwinden die Vorsprungsgewinne der Pionierunternehmen, das Angebot dehnt sich aus und senkt die Guterpreise auf das Niveau der Durchschnittskosten.”3)
- Published
- 1995
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27. Psychologische Ausgangslage
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Stephanie Barth
- Published
- 1995
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28. Abstract 4036: The microRNA profile of prostate carcinoma obtained by deep sequencing reveals potential miRNA targets such as myosin VI
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Jaroslaw Szczyrba, Volker Jung, Friedrich A. Grässer, Bernd Wullich, Sven Wach, Elke Löprich, Gerhard Unteregger, Arndt Hartmann, R. Grobholz, Stephanie Barth, Wolf F. Wieland, and Robert Stöhr
- Subjects
Cancer Research ,cDNA library ,Biology ,medicine.disease ,Molecular biology ,Deep sequencing ,Reverse transcription polymerase chain reaction ,Prostate cancer ,medicine.anatomical_structure ,Oncology ,Prostate ,microRNA ,medicine ,Northern blot ,Gene - Abstract
Background: Prostate cancer is a leading cause of tumor mortality. In order to identify and characterize the underlying molecular mechanisms, we performed microRNA (miRNA) profiling of primary prostate cancers and non-cancer prostate tissue. Furthermore, using database analysis, we sought to identify regulatory targets of aberrantly expressed miRNAs. Material and Methods: We performed comparative miRNA expression profiling in ten prostate cancer specimens and ten non-cancer prostate tissue samples using deep sequencing of cDNA libraries. The deregulation of selected miRNAs was validated in established prostate cancer cell lines by Northern blotting as well as in 26 paired samples of prostate cancer tissue and adjacent normal tissue by quantitative reverse transcription polymerase chain reaction (qRT-PCR). The regulative capabilities of selected miRNAs on potential target genes were analyzed in vitro using reporter gene constructs and transfection of miRNA expression vectors Results: Using deep sequencing we found that 16 miRNAs were up-regulated more than 1.5-fold and 17 miRNAs were down regulated more than 1.5-fold. The most pronounced deregulation was noted for miRNAs miR-375 and miR-200c which showed an up-regulation of more than 4.5-fold and miR-143 and miR-145 which were down regulated 4-fold each. The differential expression of these miRNAs could be confirmed by Northern blot analysis of established prostate cancer cell lines. By analyzing 26 primary prostate cancer samples by qRT-PCR we could detect a significant deregulation of the miRNAs miR-375, miR-143 and miR-145 (p Conclusion: Our findings indicate that specific miRNAs are reproducibly found to be deregulated in different cohorts of prostate cancer specimens using independent experimental methods. This is the first report to show that miRNAs miR-143 and miR-145 are capable of negatively regulating the protein expression of Myosin VI. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 101st Annual Meeting of the American Association for Cancer Research; 2010 Apr 17-21; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2010;70(8 Suppl):Abstract nr 4036.
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- 2010
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29. Quidelines for Authors
- Author
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Thomas Horbach, Winfried Rief, Thorkild I. A. Sørensen, Jane Christensen, Remy A. Hirasing, Barbara Schlup, Jörg Dötsch, Kim Overvad, Ian Janssen, Svenja Kraeling, Wolfgang Rascher, Iain N. Simpson, Jacob C. Seidell, Manfred Rauh, Anton Fischer, Janne Bigaard, Peter W. Taylor, Carry M. Renders, Anja Hilbert, Johannes Hebebrand, Jutka Halberstadt, Peter Klein, Anne Tjønneland, Isabelle Arnet, Gema Frühbeck, Benjamin Goetzky, Joel Warsh, Birthe Lykke Thomsen, Stephanie Barth, Andrea H. Meyer, William Pickett, Stefanie Losekam, Ina Knerr, Carolien S. Frenkel, Paul Rosenmöller, and Simone Munsch
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medicine.medical_specialty ,Health (social science) ,business.industry ,Physiology (medical) ,Medicine ,Medical physics ,business - Published
- 2010
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30. Systematic Analysis of Viral and Cellular MicroRNA Targets in Cells Latently Infected with Human γ-Herpesviruses by RISC Immunoprecipitation Assay
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Ulrich H. Koszinowski, Gunter Meister, Sébastien Pfeffer, Lisa Marcinowski, Sheila Kothe, Elisabeth Kremmer, Natalie Motsch, Caroline C. Friedel, Michaela Beitzinger, Lars Dölken, Stephanie Barth, Jürgen Haas, Diana Lieber, Ralf Zimmer, Friedrich A. Grässer, Zsolt Ruzsics, Guillaume Suffert, Susanne M. Bailer, Reinhard Hoffmann, Georg Malterer, Florian Erhard, Max Von Pettenkofer Institute (MVP), Ludwig-Maximilians-Universität München (LMU), Institute for Informatics, Architecture et Réactivité de l'ARN (ARN), Institut de biologie moléculaire et cellulaire (IBMC), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institute of Virology, Universität des Saarlandes [Saarbrücken], Max Planck Institute of Biochemistry (MPIB), Max-Planck-Gesellschaft, Basel Institute for Immunology, Institut für Molekulare Immunologie, and GSF
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Gene Expression Regulation, Viral ,Cancer Research ,Chromatin Immunoprecipitation ,Herpesvirus 4, Human ,MICROBIO ,Immunoprecipitation ,Biology ,Microbiology ,Virus ,Cell Line ,MESH: Gene Expression Regulation, Viral ,03 medical and health sciences ,0302 clinical medicine ,Immunology and Microbiology(all) ,Virology ,microRNA ,Humans ,Gene silencing ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Molecular Biology ,Cells, Cultured ,030304 developmental biology ,MESH: Chromatin Immunoprecipitation ,MESH: Herpesvirus 8, Human ,Regulation of gene expression ,0303 health sciences ,MESH: Humans ,Microarray analysis techniques ,MESH: Host-Pathogen Interactions ,MESH: Herpesvirus 4, Human ,Argonaute ,Microarray Analysis ,MESH: Gene Expression Regulation ,Molecular biology ,MESH: Cell Line ,MicroRNAs ,MESH: Microarray Analysis ,Gene Expression Regulation ,MESH: RNA, Viral ,030220 oncology & carcinogenesis ,Herpesvirus 8, Human ,Host-Pathogen Interactions ,RNA, Viral ,Parasitology ,MESH: MicroRNAs ,Chromatin immunoprecipitation ,MESH: Virology ,MESH: Cells, Cultured - Abstract
International audience; The mRNA targets of microRNAs (miRNAs) can be identified by immunoprecipitation of Argonaute (Ago) protein-containing RNA-induced silencing complexes (RISCs) followed by microarray analysis (RIP-Chip). Here we used Ago2-based RIP-Chip to identify transcripts targeted by Kaposi's sarcoma-associated herpesvirus (KSHV) miRNAs (n = 114), Epstein-Barr virus (EBV) miRNAs (n = 44), and cellular miRNAs (n = 2337) in six latently infected or stably transduced human B cell lines. Of the six KSHV miRNA targets chosen for validation, four showed regulation via their 3'UTR, while two showed regulation via binding sites within coding sequences. Two genes governing cellular transport processes (TOMM22 and IPO7) were confirmed to be targeted by EBV miRNAs. A significant number of viral miRNA targets were upregulated in infected cells, suggesting that viral miRNAs preferentially target cellular genes induced upon infection. Transcript half-life both of cellular and viral miRNA targets negatively correlated with recruitment to RISC complexes, indicating that RIP-Chip offers a quantitative estimate of miRNA function.
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