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Additional file 1: Figure S1. Sequencing read counts by sample prior to rarefaction. Figure S2. Shannon Diversity Index for a randomly selected 79 samples (50% of the dataset) at a range of read depths. Table S1. Bacterial OTUs that are significantly associated with gestational age at 6 weeks of age. Table S2. Associations between bacterial phyla and gestational age at 6 weeks of age. Table S3. OTUs and their associated clinical factors at 6 weeks of age. Table S4. Phyla and their associated clinical factors at 6 weeks of age. Table S5. Bacterial OTUs that are significantly associated with gestational age at 2 years of age. Table S6. Associations between bacterial phyla and gestational age at 2 years of age. Table S7. OTUs and their associated clinical factors at 2 years of age. Table S8. Phyla and their associated clinical factors at 2 years of age.