61 results on '"Shumin Xu"'
Search Results
2. Targeting immune checkpoints on tumor-associated macrophages in tumor immunotherapy
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Shumin Xu, Chenyang Wang, Lingge Yang, Jiaji Wu, Mengshu Li, Peng Xiao, Zhiyong Xu, Yun Xu, and Kai Wang
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Immunology ,Immunology and Allergy - Abstract
Unprecedented breakthroughs have been made in cancer immunotherapy in recent years. Particularly immune checkpoint inhibitors have fostered hope for patients with cancer. However, immunotherapy still exhibits certain limitations, such as a low response rate, limited efficacy in certain populations, and adverse events in certain tumors. Therefore, exploring strategies that can improve clinical response rates in patients is crucial. Tumor-associated macrophages (TAMs) are the predominant immune cells that infiltrate the tumor microenvironment and express a variety of immune checkpoints that impact immune functions. Mounting evidence indicates that immune checkpoints in TAMs are closely associated with the prognosis of patients with tumors receiving immunotherapy. This review centers on the regulatory mechanisms governing immune checkpoint expression in macrophages and strategies aimed at improving immune checkpoint therapies. Our review provides insights into potential therapeutic targets to improve the efficacy of immune checkpoint blockade and key clues to developing novel tumor immunotherapies.
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- 2023
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3. A Novel MRI Feature, the Cut Green Pepper Sign, Can Differentiate a Suprasellar Pilocytic Astrocytoma From an Adamantinomatous Craniopharyngioma
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shumin xu, Wan-Qun Yang, Yi Luo, Xiaoyu Wang, Yaowen Li, Xianlei Meng, Yuze Zhang, Hongwu Zeng, and Biao Huang
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Objective There are no specific magnetic resonance imaging (MRI) features that distinguish pilocytic astrocytoma (PA) from adamantinomatous craniopharyngioma (ACP). In this study we compared the frequency of a novel enhancement characteristic on MRI (called the cut green pepper sign) in PA and ACP. Methods Consecutive patients with PA (n = 24) and ACP (n = 36) in the suprasellar region were included in the analysis. The cut green pepper sign was evaluated on post-contrast T1WI images independently by 2 neuroradiologists who were unaware of the pathologic diagnosis. The frequency of cut green pepper sign in PA and ACP was compared with Fisher’s exact test. Results The cut green pepper sign was identified in 50% (12/24) of patients with PA, and 5.6% (2/36) with ACP. The sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of the cut green pepper sign for diagnosing PA were 50%, 94.4%, 85.7% and 73.9%, respectively. There was a statistically significant difference in the age of patients with PA with and without the cut green pepper sign (12.3 ± 9.2 years vs. 5.5 ± 4.4 years, p = 0.035). Conclusion The novel cut green pepper sign can help distinguish suprasellar PA from ACP on MRI.
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- 2023
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4. Analysis of Clinical Value and Necessity of Preoperative Colonoscopy in Patients with Anal Fistula
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Shumin Xu, Luo Zhang, Bo Cao, Fang Liu, Zhi Li, and Kaiping Wang
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Background: To explore the clinical application value of preoperative colonoscopy in patients with anal fistula. Methods: (1) This study analyzed 1796 patients with benign anorectal diseases who underwent preoperative intestinal endoscopy and met the surgical criteria in the past three years at the First Affiliated Hospital of Guizhou University of Traditional Chinese Medicine. Of these patients, 949 with anal fistula were classified as group A and 847 non-anal fistula patients were classified as group B. We compared and analyzed the general information, endoscopic findings, pathological characteristics of polyp, distribution of bowel-inflammation location, and inflammatory bowel disease examination results between the two groups of patients. (2) 2275 anal fistula patients without surgical contraindications in the past three years at the hospital were selected. Based on whether they underwent preoperative intestinal endoscopy, 949 anal fistula patients who underwent preoperative intestinal endoscopy were classified as group A and 1326 anal fistula patients who did not were classified as group C. This study compared the detection rate of endoscopic lesions and IBD results between the two groups of patients. Results: (1) There was no statistically significant difference in general information between groups A and B, indicating comparability. However, the abnormal detection rate in group A was higher than that in group B(P<0.01). In terms of endoscopic findings, the detection rate of bowel inflammation, IBD, and polyps in the anal fistula group was higher than that in the non-anal fistula group(P<0.05). Regarding the location of inflammation, group A exhibited a higher detection rate in the terminal ileum, ileocecal region, and ascending colon than group B(P<0.05). The incidence of IBD in group A was higher than that in group B, but there was no statistically significant difference between the two groups(P>0.05). (2) The study found that there was a statistically significant difference in the intestinal endoscopic detection rate between the two anal fistula groups (groups A and C)(P<0.01). The detection rate of IBD in the two anal fistula groups (groups A and C) had statistical significance(P<0.05). The detection rate of Crohn's disease in the two anal fistula groups (groups A and C) also had statistical significance(P<0.05). Conclusions: Preoperative colonoscopy is of great clinical value in the preoperative evaluation of patients with anal fistula, and it is necessary to perform preoperative colonoscopy to exclude localized perianal lesions caused by inflammatory bowel disease, thereby reducing the rate of missed diagnoses and improving treatment outcomes.
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- 2023
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5. Probiotic Escherichia coli NISSLE 1917 for inflammatory bowel disease applications
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Zejing Zhao, Shumin Xu, Wangyang Zhang, Danjun Wu, and Gensheng Yang
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General Medicine ,digestive system diseases ,Food Science - Abstract
Probiotic Escherichia coli Nissle 1917 (EcN) with different modifications has exhibited multiple superiorities in the prevention and treatment of inflammatory bowel disease.
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- 2022
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6. A VV-ECMO supported severe pneumonia caused by Chlamydia abortus: a case report
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wahkwong Yip, bin wu, baohua ye, chengyi ji, ziyao wu, minli chen, chunmiao lin, Jialiang Ye, wenzhi ke, qiuyan chen, shumin xu, and huimin chen
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Background: Human infection with Chlamydia abortus is very rare, mainly described as septicemia and abortion in pregnant women with previous Chlamydia abortus exposure. Though there is a case of atypical pneumonia caused by Chlamydia abortus in 2016, none of the reported infections manifested primarily as severe hypoxemia. Case Presentation: A 69-year-old male farmer admitted to our ICU for pneumonia caused severe hypoxemia, with PaO2 /FiO2 ratio dropped to 53.1 mmHg when under mechanical ventilation. Bronchoalveolar lavage fluid(BALF) for untargeted metagenomic NGS was taken soon after VV- ECMO support. Sequencing results indicate Chlamydia abortus is the pathogen. The patient operated a farm raising more than a hundred pigs and some poultry before the disease, with no ruminant in the farm, and the possibility of contact was denied. Two weeks later, the patient was weaned from ECMO, recovered, and was discharged a month later. Conclusion: Chlamydia abortus infection in humans may as well cause severe pneumonia with hypoxemia and need ECMO support. clinician veterinarians and public health officials should be aware of possible severe pulmonary infection due to Chlamydia abortus.
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- 2023
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7. CircN4bp1 Facilitates Sepsis-Induced Acute Respiratory Distress Syndrome through Mediating Macrophage Polarization via the miR-138-5p/EZH2 Axis
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Xiaowei Bao, Na Liu, Shao Li, Lunxian Tang, Chunxue Wang, Shumin Xu, Qinshu Meng, Xiandong Liu, Xiaohui Zhou, Dongyang Zhao, Shougang Zhuang, and Qianqian Zhang
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ARDS ,History ,Article Subject ,Polymers and Plastics ,Immunology ,Macrophage polarization ,Inflammation ,Lung injury ,Industrial and Manufacturing Engineering ,Sepsis ,Mice ,medicine ,Pathology ,Macrophage ,RB1-214 ,Animals ,Humans ,Enhancer of Zeste Homolog 2 Protein ,Business and International Management ,Gene knockdown ,Respiratory Distress Syndrome ,business.industry ,Macrophages ,Nuclear Proteins ,RNA-Binding Proteins ,Methyltransferases ,RNA, Circular ,Cell Biology ,Macrophage Activation ,medicine.disease ,MicroRNAs ,Cancer research ,Leukocytes, Mononuclear ,medicine.symptom ,business ,Ex vivo ,Research Article - Abstract
Background: We recently reported the differential circRNAs expression patterns of the pulmonary macrophages in sepsis induced ARDS mice model by microarray analysis; However, their function and hidden molecular mechanism in regulation of macrophage activation and inflammation remains poorly understood. Methods: Serum were obtained from ARDS patients post sepsis and control subjects. Mice were subjected to Cecal ligation and puncture (CLP) surgery and intravenously injected with si-circN4bp1 plasmid transfected macrophages. Raw264.7 cells and MH-S cells were transfected with circN4bp1 overexpression or silence vectors and then polarized as M1 or M2 macrophages in vitro. Findings: CircN4bp1 was overexpressed in PBMC and monocytes and its expression levels were correlated with a poor prognosis in ARDS patients induced by sepsis. Knockdown of circN4bp1 inhibited the lung injury and improved the long-time survival through blunting the M1 macrophage activation in ARDS mice. Moreover, bioinformatics analysis predicated a circN4bp1/miR-138-5p ceRNA network, which was confirmed by Luciferase reporter assay and RNA binding protein immunoprecipitation (RIP). CircN4bp1 affected macrophage differentiation by binding to miR-138-5p, thus regulating the expression of EZH2 in vivo and ex vivo . Lastly, the m6A level of circN4bp1 was found to be elevated in ARDS mice; inhibition of m6A methyltransferases METTL3 blocked this response in vitro. Interpretation: CircN4bp1 can function as a miR-138-5p sponge for the modulation of macrophage polarization through regulation the expression of EZH2 and may serve as a potential target and/or prognostic marker for ARDS patients following sepsis. Funding: The National Natural Science Foundation of China (81970072 and 81670690), the leading medical talent project of Shanghai Pudong heath bureau (PWRI2019‐05 and PWR12020-07), the Shanghai Scientific Committee of China (20Y11901200, 21ZR1452400, 20ZR1445800 and 13PJ1406900). Declaration of Interest: The authors declare that they have no competing interests. Ethical Approval: The manuscript contains animal experiments that have been approved by the Animal Use Committee of East Hospital/Tongji University, China. The manuscript contains human subjects that have been approved by the Research Ethics Board of East Hospital, Tongji University. All recruited patients or their authorized family members were given a written consent document.
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- 2021
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8. Optimization of the Air-Flow Induced Acoustic Excitation Parameters in Jet-Resonant Cavity of Piezoelectric Generator
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Jianming Zhang, Shumin Xu, and Hejuan Chen
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- 2022
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9. Research progress of engineering microbial cell factories for pigment production
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Shumin Xu, Song Gao, and Yingfeng An
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Bioengineering ,Applied Microbiology and Biotechnology ,Biotechnology - Published
- 2023
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10. Modification of DNA regions with metagenomic DNA fragments (MDRMDF): A convenient strategy for efficient protein engineering
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Song Gao, Hongling Wang, Yang Yao, Xianghui Qi, Shumin Xu, Shao Yilun, Yingfeng An, and Yifeng Zhang
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0301 basic medicine ,030102 biochemistry & molecular biology ,Chemistry ,DNA ,General Medicine ,Computational biology ,Protein engineering ,Protein Engineering ,Directed evolution ,Biochemistry ,Recombinant Proteins ,Metabolic engineering ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Mutant protein ,Metagenomics ,Cloning, Molecular ,Gene ,Function (biology) - Abstract
In this study, we have established a convenient and efficient approach named Modification of DNA Regions with Metagenomic DNA Fragments (MDRMDF) for protein engineering. Degenerate primers were designed corresponding to conserved regions of the gene of interest which were used for amplification of fragments with template of the metagenomic DNA. The resulting PCR products were used to replace the corresponding regions of the gene of interest to introduce modified gene for function-based screening. Therefore, this method can make full use of the metagenomic DNA sequences with unknown metagenomic gene information for efficient protein engineering. The β-xylosidase BH3683 was used to construct a MDRMDF library which was screened with a newly designed p-NPX-M9 medium-based strategy. As a result, a mutant protein Xyl-M56 showing high activity, improved pH stability and higher tolerance to organic solvents was obtained which may have potential for industrial application. The MDRMDF method may find wide application in enzyme engineering, metabolic engineering and other fields, especially offering a new methodological option for the directed evolution of proteins.
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- 2021
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11. Increased sIL-2Rα leads to obstruction of IL-2 biological function and Treg cells differentiation in SLE patients via binding to IL-2
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Dan Long, Shujiao Yu, Lu Zhang, Yang Guo, Shumin Xu, Yuting Rao, Zikun Huang, Qing Luo, and Junming Li
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Immunology ,Immunology and Allergy - Abstract
BackgroundThe decrease of IL-2 level is believed to play an important role in the disease occurrence and development of SLE, but the relevant mechanisms have not been fully clarified. Many studies have found that the level of soluble interleukin 2 receptor α (sIL-2Rα) in SLE patients is significantly increased. Considering the fact that sIL-2Rα has the ability to bind IL-2, we want to know whether the increased sIL-2Rα has some impact on the level and function of IL-2 in SLE patients.MethodsNew onset SLE patients, treated SLE patients and healthy volunteers were recruited. The levels of serum IL-2, IL-2 mRNA in CD3+T cells and serum sIL-2Rα were detected and compared in these subjects. Two mixed solid-phase sandwich ELISA system were designed to measure exclusively the heterodimers complex of sIL-2Rα/IL-2. The sera from SLE patients were pretreated with or without immune complex dissociation solution and detected for IL-2 levels. IL-2 standard or serum from HCs were used to co-incubate with recombinant sIL-2Rα or serum samples with high levels of sIL-2Rα and detected for IL-2 levels by ELISA. The inhibitory effect of sIL-2Rα on IL-2 biological activity was investigated by CTLL-2 cell proliferation assay. The frequencies and absolute counts of Treg cells were detected by flow cytometry before and after the addition of recombinant sIL-2Rα.ResultsThe levels of serum IL-2 in SLE patients were significantly decreased and negatively correlated with SLEDAI. However, there was no significant difference in IL-2 mRNA levels in CD3+T cells between SLE patients and healthy controls. The levels of serum sIL-2Rα in SLE patients were significantly increased, positively correlated with the SLEDAI and negatively correlated with the levels of serum IL-2. sIL-2Rα was shown to bind to IL-2 to form immune complex, resulting in false reduction in the detection level of serum IL-2 and significant decrease in biological activity of IL-2. The increase of sIL-2Rα was demonstrated to be one of the important mechanisms for the obstruction of Treg cells differentiation in SLE patients.ConclusionIncreased serum sIL-2Rα can bind to IL-2, leading to obstruction of IL-2 activity and Treg cells differentiation.
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- 2022
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12. Improving the Sustainability of Processing By-Products: Extraction and Recent Biological Activities of Collagen Peptides
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Shumin Xu, Yuping Zhao, Wenshan Song, Chengpeng Zhang, Qiuting Wang, Ruimin Li, Yanyan Shen, Shunmin Gong, Mingbo Li, and Leilei Sun
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Health (social science) ,Plant Science ,Health Professions (miscellaneous) ,Microbiology ,Food Science - Abstract
Society and consumers are increasingly concerned about food safety and the sustainability of food production systems. A significant amount of by-products and discards are generated during the processing of aquatic animals, which still needs to be fully utilized by the food industry. The management and sustainable use of these resources are essential to avoiding environmental pollution and resource waste. These by-products are rich in biologically active proteins, which can be converted into peptides by enzymatic hydrolysis or fermentation treatment. Therefore, exploring the extraction of collagen peptides from these by-products using an enzymatic hydrolysis technology has attracted a wide range of attention from numerous researchers. Collagen peptides have been found to possess multiple biological activities, including antioxidant, anticancer, antitumor, hypotensive, hypoglycemic, and anti-inflammatory properties. These properties can enhance the physiological functions of organisms and make collagen peptides useful as ingredients in food, pharmaceuticals, or cosmetics. This paper reviews the general methods for extracting collagen peptides from various processing by-products of aquatic animals, including fish skin, scales, bones, and offal. It also summarizes the functional activities of collagen peptides as well as their applications.
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- 2023
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13. Probiotic
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Zejing, Zhao, Shumin, Xu, Wangyang, Zhang, Danjun, Wu, and Gensheng, Yang
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Diarrhea ,Probiotics ,Escherichia coli ,Humans ,Colitis, Ulcerative ,Escherichia coli Infections - Published
- 2022
14. Increased sIL-2Rα leads to obstruction of IL-2 biological function and Treg cells differentiation in SLE patients
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Dan, Long, Shujiao, Yu, Lu, Zhang, Yang, Guo, Shumin, Xu, Yuting, Rao, Zikun, Huang, Qing, Luo, and Junming, Li
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Interleukin-2 Receptor alpha Subunit ,Humans ,Interleukin-2 ,Lupus Erythematosus, Systemic ,Antigen-Antibody Complex ,RNA, Messenger ,T-Lymphocytes, Regulatory - Abstract
The decrease of IL-2 level is believed to play an important role in the disease occurrence and development of SLE, but the relevant mechanisms have not been fully clarified. Many studies have found that the level of soluble interleukin 2 receptor α (sIL-2Rα) in SLE patients is significantly increased. Considering the fact that sIL-2Rα has the ability to bind IL-2, we want to know whether the increased sIL-2Rα has some impact on the level and function of IL-2 in SLE patients.New onset SLE patients, treated SLE patients and healthy volunteers were recruited. The levels of serum IL-2, IL-2 mRNA in CD3The levels of serum IL-2 in SLE patients were significantly decreased and negatively correlated with SLEDAI. However, there was no significant difference in IL-2 mRNA levels in CD3Increased serum sIL-2Rα can bind to IL-2, leading to obstruction of IL-2 activity and Treg cells differentiation.
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- 2022
15. Biocompatibility, hemostatic properties, and wound healing evaluation of tilapia skin collagen sponges
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Lei Han, Ping Liu, Yonglin Gao, Ze-Ping Xie, Lintong Yang, Li Dongsheng, Tong Wang, Xuejie Liu, Shumin Xu, Guangfei Wang, Shumin Zhang, Lei Wang, Kaili Chen, Haiyue Liang, and Xiumei Mo
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food.ingredient ,integumentary system ,Polymers and Plastics ,Biocompatibility ,Chemistry ,Bioengineering ,Tilapia ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Biomaterials ,food ,Collagen sponge ,Materials Chemistry ,0210 nano-technology ,Wound healing ,Biomedical engineering - Abstract
Dialyzed tilapia skin collagen sponge (DTSCS) and self-assembled tilapia skin collagen sponge (STSCS) were prepared by freeze-drying. The raw components used in the fabrication of DTSCS and STSCS were separated and purified from tilapia fish skin. It is anticipated that these collagen sponges could be developed into medical dressings for hemostasis and wound healing. The aim of the present research was to explore the possibility of DTSCS and STSCS as medical dressings and compare their differences by scanning electron microscopy (SEM), water absorption measurement, differential scanning calorimetry (DSC), measurement of porosity, cytotoxicity, hemolysis, in vivo biocompatibility, and evaluation of hemostatic performance and wound healing. The results indicate that DTSCS and STSCS are suitable materials for use in medical applications with a loose and porous structure, high water absorption, high porosity, and high thermal stability. The materials also displayed good biocompatibility, including excellent blood compatibility, a lack of cytotoxicity, with no apparent rejection following implantation. STSCS exhibited rapid hemostasis and promoted healing, with slightly greater efficacy than DTSCS. The hemostatic properties and promotion of healing in DTSCS was similar to that of commercial bovine collagen sponge. Therefore, DTSCS and STSCS both represented excellent potential candidate materials for use as hemostatic agents and wound dressings.
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- 2020
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16. Nutrient release from fish cage aquaculture and mitigation strategies in Daya Bay, southern China
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Rongjun Shi, Qingyang Liang, Shumin Xu, Heizhao Lin, Zhanhui Qi, Zonghe Yu, Honghui Huang, Tingting Han, Shannan Xu, Wei Yu, and Chunhou Li
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0106 biological sciences ,China ,Oyster ,Nitrogen ,Fish farming ,chemistry.chemical_element ,Aquaculture ,010501 environmental sciences ,Aquatic Science ,Oceanography ,01 natural sciences ,Nutrient ,Rivers ,biology.animal ,Animals ,Seawater ,Mariculture ,Environmental Restoration and Remediation ,Integrated multi-trophic aquaculture ,0105 earth and related environmental sciences ,biology ,010604 marine biology & hydrobiology ,Phosphorus ,Fishes ,Nutrients ,Fish products ,Animal Feed ,Ostreidae ,Pollution ,Bays ,chemistry ,Agronomy ,Environmental science ,Bay ,Water Pollutants, Chemical - Abstract
Finfish cage culture is the most predominant form of mariculture. The rapid expansion of fish cage culture systems has raised concerns about their environmental impact, such as nutrient release. In this study, for the first time, we estimated the release of nitrogen (N) and phosphorus (P) from fish cage culture in Daya Bay, southern China, by constructing N and P budget models based on a mass balance principle. In addition, the contribution and importance of nutrients from fish culture and other nutrient sources, including submarine groundwater discharge, benthic sediments, local rivers, and atmospheric deposition were assessed. The annual amount of N and P released from fish cage culture was 205.6 metric tons (hereafter tons) of N and 39.2 tons of P, including 142.7 tons of dissolved inorganic nitrogen (DIN) and 15.1 tons of dissolved inorganic phosphorus (DIP). Among the analyzed nutrient sources, the contributions of DIN and DIP from fish culture were 7.0% and 2.7%, respectively. For cages consuming conventional trash fish, 142 kg of N and 26 kg of P were released into the environment per ton of fish products, much higher than the values (72 kg N and 17.3 kg P) for cages using formulated feed. In fish culture, the dissolved nutrients were more N rich, but the particulate nutrients were more P rich. The ratio of cage-derived N and P was 21.1, higher than the ratio of coastal seawater (27.1), indicating that cage culture may also impact the local nutrient forms around farming regions. Oyster cultivation and harvest removed 126.3 tons of N and 35.1 tons of P from of the bay. Replacing trash fish with formulated feed and co-culturing of nutrient extractive species (e.g., bivalves, macroalgae) and deposit-feeding species (e.g., sea cucumber) in fish culture zones can be efficient nutrient mitigation strategies.
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- 2019
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17. Seasonal patterns and environmental drivers of nirS- and nirK-encoding denitrifiers in sediments of Daya Bay, China
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Zhanhui Qi, Rongjun Shi, Shumin Xu, Qingyang Liang, and Honghui Huang
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0106 biological sciences ,Atmospheric Science ,Denitrification ,010504 meteorology & atmospheric sciences ,Ecology ,010604 marine biology & hydrobiology ,Daya bay ,Environmental factor ,Community structure ,Sediment ,Ocean Engineering ,Aquatic Science ,Biology ,Oceanography ,medicine.disease_cause ,01 natural sciences ,Denitrifying bacteria ,lcsh:Oceanography ,Southern china ,Abundance (ecology) ,medicine ,lcsh:GC1-1581 ,0105 earth and related environmental sciences - Abstract
Summary: The seasonal patterns of the denitrifiers (denitrifying bacteria) in the sediment of Daya Bay, southern China, were examined using quantitative PCR and high-throughput MiSeq sequencing methods in spring, summer and winter. The abundance and diversity of nirS-encoding denitrifiers were much higher than that of nirK-encoding denitrifiers, indicating that the former probably dominated the denitrification processes in sediments of Daya Bay. The average abundance and diversity of nirS-encoding denitrifiers were much higher in spring than that in summer and winter, on the other hand, the abundance of nirK-encoding denitrifiers showed the opposite pattern. The species composition of nirS-encoding denitrifiers community in spring differed significantly from that in summer and winter, whereas, no significant difference existed between summer and winter. The dominant environmental drivers for the diversity of community species were NO2−, NO3− and DO concentrations. The abundances of dominant genera of nirS- encoding denitrifiers, Accumulibacter sp. and Cuprizvidus sp., were significantly higher in summer and winter than that in spring, and were negatively correlated with NO2−, NO3−, and DO concentrations (p
- Published
- 2019
18. Isolation of formaldehyde-degrading bacteria and the evaluation of the degradation characteristics
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Shumin Xu, Shunyi Li, Menglei Wang, and Rencheng Zhu
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Chromatography ,biology ,Strain (chemistry) ,Chemistry ,General Chemical Engineering ,Formaldehyde ,02 engineering and technology ,Biodegradation ,010402 general chemistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Isolation (microbiology) ,01 natural sciences ,Pseudomonas putida ,0104 chemical sciences ,chemistry.chemical_compound ,Biofilter ,Degradation (geology) ,0210 nano-technology ,Bacteria - Abstract
A formaldehyde-degrading bacteria strain, B1, was isolated. Strain B1 was characterized morphologically, physiologically and biochemically, and it was identified as Pseudomonas putida. Then, the formaldehyde biodegradation characteristics were evaluated in a biofilter. A formaldehyde removal rate above 90% was maintained when inlet loading was below 38.9 mg L−1 h−1. In addition, strain B1 quickly became dominant bacteria when the reactor was restarted following a 30-days’ disruption, illustrating that the strain is both adaptable and resilient. The numerical simulation results demonstrate that the maximum degradation rates in the biofilter with strain B1 are better fitted with the Haldane model.
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- 2019
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19. Lycium barbarum polysaccharide reduces hyperoxic acute lung injury in mice through Nrf2 pathway
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Yanli Yan, Jianwen Bai, Bingke Sun, Shumin Xu, Xiuhua Li, Yusheng Li, Guizhen Zheng, Tiancao Dong, Huijuan Ren, and Hongqiang Li
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Male ,0301 basic medicine ,NF-E2-Related Factor 2 ,Acute Lung Injury ,Lycium barbarum polysaccharide ,RM1-950 ,Hyperoxia ,Lung injury ,Pharmacology ,Nrf2 ,Proinflammatory cytokine ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Animals ,Medicine ,Cells, Cultured ,Mice, Knockout ,chemistry.chemical_classification ,Mice, Inbred BALB C ,Reactive oxygen species ,business.industry ,Glutathione peroxidase ,AMPK ,Interleukin ,General Medicine ,respiratory system ,Pulmonary edema ,medicine.disease ,nervous system diseases ,respiratory tract diseases ,Mice, Inbred C57BL ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Therapeutics. Pharmacology ,Endothelium, Vascular ,medicine.symptom ,business ,Drugs, Chinese Herbal ,Signal Transduction - Abstract
Introduction The disruption of the balance between antioxidants and oxidants plays a vital role in the pathogenesis of acute lung injury (ALI). Evidence has shown that Lycium barbarum polysaccharide (LBP) has antioxidant feature. We examined the efficacy and mechanisms of LBP on hyperoxia-induced acute lung injury (ALI) in the present study. Materials and methods C57BL/6 wild-type (WT) mice and nuclear factor erythroid 2-related factor 2 (Nrf2)-deficient (Nrf2–/–) mice were used in the present study. LBP was fed by gavages once daily for 1 week. Then, the mice were exposed to hyperoxia or room air for 72 h. Additional dosage of LBP was given per 24 h. Results Reactive oxygen species production was increased in WT mice exposed to hyperoxia. Inflammatory cytokines including interleukin (IL)-1β as well as IL-6, and inflammatory cells were increased infiltration in the lung after 3 days hyperoxia exposure. Hyperoxia exposure also induced pulmonary edema and histopathological changes. These hyperoxia-induced changes were improved in LBP treated group. Moreover, elevated activities of heme oxygenase-1 and glutathione peroxidase and enhanced activation of Nrf2 were observed in mice treated with LBP. However, the benefit of LBP on hyperoxic ALI was abolished in Nrf2–/– mice. Moreover, our cell study showed that the LBP-induced activation of Nrf2 was dampened in pulmonary microvascular endothelial cells when the AMPK signal was inhibited by siRNA. Conclusions LBP improves hyperoxic ALI via Nrf2-dependent manner. The LBP-induced activation of Nrf2 is mediated, at least in part, by AMPK pathway.
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- 2019
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20. Novel biocatalytic strategy of levan: His-ELP-intein-tagged protein purification and biomimetic mineralization
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Yifeng, Zhang, Song, Gao, Xianghui, Qi, Song, Zhu, Shumin, Xu, Yaokun, Liang, Fanshu, Kong, Shuai, Yang, Rui, Wang, Yiting, Wang, and Yingfeng, An
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Sucrose ,Polymers and Plastics ,Biomimetics ,Recombinant Fusion Proteins ,Organic Chemistry ,Materials Chemistry ,Peptides ,Elastin ,Fructans ,Inteins - Abstract
Here a versatile fusion tag composed of His-tag, intein, and elastin-like polypeptide (ELP) tag was prepared for the first time to be fused with levansucrase SacB to construct a recombinant His-ELP-intein-SacB (HEIS) protein to realize nonchromatographic purification of SacB. The efficient biomimetic mineralization of CaHPO
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- 2022
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21. Biosensor-Based Multigene Pathway Optimization for Enhancing the Production of Glycolate
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Shenghu Zhou, Shumin Xu, Linpei Zhang, and Yu Deng
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0106 biological sciences ,High-throughput screening ,lac operon ,Biosensing Techniques ,01 natural sciences ,Applied Microbiology and Biotechnology ,Metabolic engineering ,03 medical and health sciences ,Synthetic biology ,Bioreactors ,Bacterial Proteins ,010608 biotechnology ,Gene expression ,Escherichia coli ,Bioreactor ,Inducer ,Promoter Regions, Genetic ,030304 developmental biology ,0303 health sciences ,Ecology ,Chemistry ,technology, industry, and agriculture ,Gene Expression Regulation, Bacterial ,Glycolates ,High-Throughput Screening Assays ,Metabolic Engineering ,Biochemistry ,Fermentation ,Flux (metabolism) ,Plasmids ,Food Science ,Biotechnology - Abstract
Glycolate is widely used in industry, especially in the fields of chemical cleaning, cosmetics, and medical materials, and has broad market prospects for the future. Recent advances in metabolic engineering and synthetic biology have significantly improved the titer and yield of glycolate. However, an expensive inducer was used in previous studies, which is not feasible for use in large-scale industrial fermentations. To constitutively biosynthesize glycolate, the expression level of each gene of the glycolate synthetic pathway needs to be systemically optimized. The main challenge of multigene pathway optimization is being able to select or screen the optimum strain from the randomly assembled library by an efficient high-throughput method within a short time. To overcome these challenges, we firstly established a glycolate-responsive biosensor and developed agar plate- and 48-well deep-well plate-scale high-throughput screening methods for the rapid screening of superior glycolate producers from a large library. A total of 22 gradient-strength promoter–5′-untranslated region (UTR) complexes were randomly cloned upstream of the genes of the glycolate synthetic pathway, generating a large random assembled library. After rounds of screening, the optimum strain was obtained from 6 × 10(5) transformants in a week, and it achieved a titer of 40.9 ± 3.7 g/liter glycolate in a 5-liter bioreactor. Furthermore, high expression levels of the enzymes YcdW and GltA were found to promote glycolate production, whereas AceA has no obvious impact on glycolate production. Overall, the glycolate biosensor-based pathway optimization strategy presented in this work provides a paradigm for other multigene pathway optimizations. IMPORTANCE The use of strong promoters, such as pTrc and T7, to control gene expression not only needs the addition of expensive inducers but also results in excessive protein expression that may result in unbalanced metabolic flux and the waste of cellular building blocks and energy. To balance the metabolic flux of glycolate biosynthesis, the expression level of each gene needs to be systemically optimized in a constitutive manner. However, the lack of high-throughput screening methods restricted glycolate synthetic pathway optimization. Our work firstly established a glycolate-response biosensor, and agar plate- and 48-well plate-scale high-throughput screening methods were then developed for the rapid screening of optimum pathways from a large library. Finally, we obtained a glycolate-producing strain with good biosynthetic performance, and the use of the expensive inducer isopropyl-β-d-thiogalactopyranoside (IPTG) was avoided, which broadens our understanding of the mechanism of glycolate synthesis.
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- 2021
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22. A collagen-based bi-layered composite dressing for accelerated wound healing
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Chengpeng Zhang, Shumin Xu, Yueqi Wang, Laihao Li, Leilei Sun, and Mingbo Li
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Wound Healing ,integumentary system ,biology ,business.industry ,Basic fibroblast growth factor ,Interleukin ,Dermatology ,Transforming growth factor beta ,Pharmacology ,Bandages ,Pathology and Forensic Medicine ,Proinflammatory cytokine ,chemistry.chemical_compound ,Hydroxyproline ,medicine.anatomical_structure ,chemistry ,Re-Epithelialization ,Epidermal growth factor ,medicine ,biology.protein ,Collagen ,Fibroblast ,business ,Wound healing ,Skin - Abstract
Aim of the study The aim of the study was to fabricate collagen-based composite dressings, evaluate the efficiency for wound healing and reveal the mechanism of promoting wound healing. Materials and methods An innovative bi-layered composite wound dressing was developed using two marine biomacromolecules (collagen and chitosan). Full-thickness skin defect model was performed to evaluate the wound healing activity in vivo. The levels of inflammatory cytokines including tumor necrosis factor alpha (TNF-α), interleukin (IL-1, IL-6, IL-8) and growth factors like transforming growth factor beta (TGF-β), vascular epidermal growth factor (VEGF) and basic fibroblast growth factor (bFGF) were quantified by ELISA assays. The total amount of collagen was quantified by hydroxyproline content. The proliferation and viability of fibroblast cells cultured on collagen sponges were determined by CCK-8 assay. Results The results of wound closure and histopathological analysis indicated that non-crosslinked collagen-based bi-layered composite dressing stimulated wound healing, accelerated re-epithelialization and accomplished wound healing within a time span of 28 days. The results of levels of inflammatory cytokines and growth factors showed that collagen-based composite dressings could reduce the inflammatory response and upregulate growth factors levels to accelerate the wound healing. The results of hydroxyproline content and CCK-8 assay indicated that collagen-based composite dressings could also promote collagen synthesis and fibroblasts viability and proliferation. Conclusion The non-crosslinked collagen-based bi-layered composite dressing could be applied for an efficient and ideal wound dressing. Therefore, the findings provided the essential theoretical basis for the potential of collagen-based composite dressing applied in wound healing fields.
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- 2021
23. Efficient Molecular Biological Manipulations with Improved Strategies Based on Novel
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Yifeng, Zhang, Herui, Gao, Xianghui, Qi, Song, Gao, Shumin, Xu, Hongling, Wang, and Yingfeng, An
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Recombinant Fusion Proteins ,Genetic Vectors ,Escherichia coli ,Cloning, Molecular ,Elastin ,Inteins ,Plasmids - Abstract
In this study, some novel plasmids have been constructed for flexible and zero-background molecular cloning, more efficient expression, and purification of proteins with improved strategies. The plasmids pANY4-pL18-ccdB and pANY4-pR18/pL18-ccdB have different promoters in the complementary DNA strands. Therefore, recombinant plasmids for either isopropyl-β-d-thiogalactoside-induced or temperature-induced protein expression could be simultaneously constructed in a single molecular cloning process for parallel comparison. Intriguingly, the mutated pL18 and pR18/pL18 promoters performed similar to or even better than the T7 promoter when used for promoting the expression of the GFP or pfLamA enzyme. Moreover, the plasmid pANY8 containing the His-elastin-like polypeptide (ELP)-intein multifunctional tag was constructed, and special purification protocol was designed to obtain purified proteins without the requirement of time-consuming dialysis steps to remove imidazole and high concentration of salt ions. Additionally, the urea-based denaturation and refolding processes can be conveniently integrated into the ELP-mediated precipitation protocol for purification of insoluble inclusion bodies, omitting the time-consuming dialysis steps.
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- 2021
24. A Near-Infrared Laser-Triggered Size-Shrinkable Nanosystem with In Situ Drug Release for Deep Tumor Penetration
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Shumin Xu, Qingliang Yang, Danjun Wu, Gensheng Yang, Wangyang Zhang, Xueling Zhang, Yi Li, Qinying Yan, and Fangyuan Guo
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In situ ,Materials science ,Infrared Rays ,Tumor penetration ,Mice, Nude ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Micelle ,law.invention ,Mice ,Drug Delivery Systems ,Microscopy, Electron, Transmission ,Upper critical solution temperature ,law ,Neoplasms ,Animals ,Humans ,General Materials Science ,Irradiation ,Micelles ,Mice, Inbred BALB C ,Antibiotics, Antineoplastic ,Lasers ,Hep G2 Cells ,021001 nanoscience & nanotechnology ,Laser ,0104 chemical sciences ,Doxorubicin ,Drug delivery ,Biophysics ,Heterografts ,Nanoparticles ,Nanorod ,Female ,0210 nano-technology - Abstract
The development of smart size-tunable drug delivery nanoplatform enables the solving of the paradox of inconsistent size-dependence of high tumor accumulation and deep penetration during its delivery process, thus achieving superior cancer treatment efficacy. Herein, we report a size-shrinkable nanomicelle complex system with an initial size of 101 nm enabling effective retention around the tumor periphery and could destruct to ultrasmall nanomicelles triggered by a near-infrared (NIR) laser to realize the deep tumor penetration. The nanomicelle system is consisted of an upper critical solution temperature (UCST)-type block copolymer poly(acrylamide-acrylonitrile)-polyethylene glycol-lipoic acid (p(AAm-co-AN)-g-PEG-LA) encapsulating gold nanorods. Upon the irradiation of the NIR laser at the tumor site, gold nanorods could convert the light energy to heat energy, realizing the photothermal ablation of superficial tumor tissue. Concurrently, the large micelles split into a cascade of ultrasmall micelles (∼7 nm), which could easily penetrate into the deep site of the tumor and achieve the in situ "on-demand" release of the loaded drug to exert superior combined photothermal-chemotherapy of cancer. By the precise manipulation of laser, the micelle complex system realized the hierarchical killing from the superficial-to-deep tumor and achieved almost complete tumor growth inhibition on the established xenograft liver tumor mice model.
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- 2021
25. A biocompatible superparamagnetic chitosan-based nanoplatform enabling targeted SN-38 delivery for colorectal cancer therapy
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Shumin Xu, Qinying Yan, Gensheng Yang, Lixi Zhu, Wangyang Zhang, Danjun Wu, Yi Li, and Yan Yang
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Polymers and Plastics ,Polymeric prodrug ,Colorectal cancer ,Mice, Nude ,SN-38 ,Nanotechnology ,Antineoplastic Agents ,Superparamagnetic nanoparticles ,Irinotecan ,Chitosan ,chemistry.chemical_compound ,Mice ,Drug Delivery Systems ,Materials Chemistry ,medicine ,Human Umbilical Vein Endothelial Cells ,Animals ,Humans ,Manufacturing process ,Organic Chemistry ,medicine.disease ,Biocompatible material ,HCT116 Cells ,chemistry ,Nanoparticles ,Colorectal Neoplasms ,Superparamagnetism - Abstract
7-Ethyl-10-hydroxycamptothecin (SN-38) as a potent anti-tumor candidate, suffers the constraints from its poor water solubility, pH-dependent lactone ring stability and the lack of efficient delivery system without losing its activity. Herein, biocompatible superparamagnetic chitosan-based nanocomplexes complexing with water-soluble polymeric prodrug poly(L-glutamic acid)-SN-38 (PGA-SN-38) was engineered for efficient delivery of SN-38. The manufacturing process of colloidal complexes was green, expeditious and facile, with one-shot addition of PGA-SN-38 into chitosan solution without using any organic solvent or surfactant. Upon introducing ultra-small-size superparamagnetic nanoparticles (~10 nm), the developed magnetic nanocomplexes exhibited significantly boosted tumor-targeted accumulation and efficient cellular internalization under a local magnetic field. Notably, the magnetic nanocomplexes achieved distinctly superior targeting and anti-tumor efficacy in the established xenograft colorectal cancer model of mice, with high tumor suppression rate up to 81%. Therefore, this superparamagnetic chitosan-based nanocomplex system could provide a promising platform for the targeted delivery of SN-38 in colorectal cancer therapy.
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- 2021
26. Construction of novel curdlan-based and Ca
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Yifeng, Zhang, Xianghui, Qi, Shuo, Yao, Song, Gao, Shumin, Xu, Hongling, Wang, Xia, Liu, and Yingfeng, An
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beta-Glucans ,Magnetic Phenomena ,Hypocreales ,Microspheres - Abstract
In this study, curdlan-based and calcium ion (Ca
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- 2021
27. Blockade of endothelial, but not epithelial, cell expression of PD-L1 following severe shock attenuates the development of indirect acute lung injury in mice
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Tianzhu Tao, Alfred Ayala, Chun-Shiang Chung, Jianwen Bai, Qian Yang, Shumin Xu, Yaping Chen, Eleanor A. Fallon, and Lunxian Tang
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Pulmonary and Respiratory Medicine ,Male ,ARDS ,Physiology ,Neutrophils ,Acute Lung Injury ,Shock, Hemorrhagic ,B7-H1 Antigen ,Mice ,Physiology (medical) ,PD-L1 ,Sepsis ,medicine ,Animals ,RNA, Small Interfering ,Lung ,Indirect acute lung injury ,Cells, Cultured ,Peroxidase ,biology ,business.industry ,Endothelial Cells ,Epithelial Cells ,Cell Biology ,medicine.disease ,Epithelium ,Blockade ,Mice, Inbred C57BL ,Disease Models, Animal ,medicine.anatomical_structure ,Shock (circulatory) ,biology.protein ,Cancer research ,Cytokines ,medicine.symptom ,Chemokines ,business ,Bronchoalveolar Lavage Fluid ,Research Article - Abstract
This study sets out to establish the comparative contribution of PD-L1 expression by pulmonary endothelial cells (ECs) and/or epithelial cells (EpiCs) to the development of indirect acute lung injury (iALI) by taking advantage of the observation that treatment with naked siRNA by intratracheal delivery in mice primarily affects lung EpiCs, but not lung ECs, while intravenous delivery of liposomal-encapsulated siRNA largely targets vascular ECs including the lung, but not pulmonary EpiCs. We showed that using a mouse model of iALI [induced by hemorrhagic shock followed by septic challenge (Hem-CLP)], PD-L1 expression on pulmonary ECs or EpiCs was significantly upregulated in the iALI mice at 24 h post–septic insult. After documenting the selective ability of intratracheal versus intravenous delivery of PD-L1 siRNA to inhibit PD-L1 expression on EpiCs versus ECs, respectively, we observed that the iALI-induced elevation of cytokine/chemokine levels (in the bronchoalveolar lavage fluid, lung lysates, or plasma), lung myeloperoxidase and caspase-3 activities could largely only be inhibited by intravenous, but not intratracheal, delivery of PD-L1 siRNA. Moreover, intravenous, but not intratracheal, delivery led to a preservation of normal tissue architecture, lessened pulmonary edema, and reduced neutrophils influx induced by iALI. In addition, in vitro mouse endothelial cell line studies showed that PD-L1 gene knockdown by siRNA or knockout by CRISPR/Cas9-mediated gene manipulation, reduced monolayer permeability, and maintained tight junction protein levels upon recombinant IFN-γ stimulation. Together, these data imply a critical role for pulmonary vascular ECs in mediating PD-1:PD-L1–driven pathological changes resulting from systemic stimuli such as Hem-CLP.
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- 2020
28. T follicular regulatory cells infiltrate the human airways during the onset of acute respiratory distress syndrome and regulate the development of B regulatory cells
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Tiancao Dong, Runv Zhou, Chunmei Wang, Sen Jiang, Shumin Xu, Hongqiang Li, Jianwen Bai, Yusheng Li, and Guizhen Zheng
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0301 basic medicine ,Immunology ,Cell ,chemical and pharmacologic phenomena ,Inflammation ,Cell Communication ,Respiratory Mucosa ,Biology ,Lymphocyte Activation ,T-Lymphocytes, Regulatory ,CXCR5 ,03 medical and health sciences ,Immune system ,T-Lymphocyte Subsets ,Immune Tolerance ,Acute lung injury ,medicine ,Humans ,CTLA-4 Antigen ,Cells, Cultured ,B-Lymphocytes, Regulatory ,Respiratory Distress Syndrome ,Tfr cell ,Germinal center ,FOXP3 ,Cell Differentiation ,hemic and immune systems ,Germinal Center ,Coculture Techniques ,Interleukin-10 ,Interleukin 10 ,030104 developmental biology ,medicine.anatomical_structure ,IL-10 ,Cancer research ,Original Article ,Lymph ,medicine.symptom - Abstract
T follicular regulatory (Tfr) cell is a CXCR5+Foxp3+ subset of T regulatory (Treg) cell with critical roles in regulating germinal center responses and modulating the immune environment in the lymph nodes. Studies have shown that the proportion of Tfr cells may increase during acute inflammation. In this study, we investigated the role of Tfr cells in acute respiratory distress syndrome (ARDS). We found that Tfr cells were significantly enriched in peripheral blood and in mini-bronchoalveolar lavage (BAL) during the onset of ARDS. Notably, Tfr cells represented the majority of Treg cells in the mini-BAL samples. Tfr cells also showed CTLA-4, IL-10, and TGF-β expression, but compared to the non-Tfr Treg cells, the CTLA-4 and IL-10 expression by Tfr cells were slightly reduced. Both Tfr cells and non-Tfr Treg cells suppressed the proliferation of autologous CD4+CD25− T cells; however, the Tfr cells displayed slightly reduced suppression capacity. Subsequently, B cells were co-incubated with autologous Tfr cells or non-Tfr Treg cells. Interestingly, we found that the frequency of IL-10+ Breg cells was significantly higher following incubation with Tfr cells than with non-Tfr Treg cells, which suggested that Tfr cells were more potent at inducing IL-10+ Breg cells. Together, these results demonstrated that Tfr cells were a similar but distinctive subset of Treg cells. Given that Tfr cells were strongly enriched in ARDS patients, especially in the lung infiltrates, they may exert critical ameliorating effects in ARDS.
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- 2018
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29. Three Novel Escherichia coli Vectors for Convenient and Efficient Molecular Biological Manipulations
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Yifei Liu, Darren J. Hart, Shumin Xu, Gao Herui, Hongling Wang, Xia Liu, Song Gao, Yingfeng An, Yifeng Zhang, Xianghui Qi, College of Biosciences and Biotechnology, Shenyang Agricultural University, School of Food and Biological Engineering, Jiangsu University, Institut de biologie structurale (IBS - UMR 5075 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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0106 biological sciences ,0301 basic medicine ,ELP ,Recombinant Fusion Proteins ,Genetic Vectors ,lac operon ,sticky-end ligation ,Molecular cloning ,intein ,medicine.disease_cause ,01 natural sciences ,TA cloning ,Inclusion bodies ,law.invention ,03 medical and health sciences ,Plasmid ,law ,010608 biotechnology ,temperature-induced expression ,Escherichia coli ,medicine ,Cloning, Molecular ,2. Zero hunger ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Chemistry ,General Chemistry ,030104 developmental biology ,Biochemistry ,Recombinant DNA ,General Agricultural and Biological Sciences ,Intein ,Plasmids - Abstract
International audience; We have constructed novel plasmids pANY2, pANY3, and pANY6 for flexible cloning with low false positives, efficient expression, and convenient purification of proteins. The pANY2 plasmid can be used for efficient isopropyl-β-d-thiogalactoside (IPTG) induced protein expression, while the pANY3 plasmid can be used for temperature-induced expression. The pANY6 plasmid contains a self-cleaving elastin-like protein (ELP) tag for purification of recombinant protein by simple ELP-mediated precipitation steps and removal of the ELP tag by self-cleavage. A urea-based denaturation and refolding processes for renaturation of insoluble inclusion bodies can be conveniently integrated into the ELP-mediated precipitation protocol, removing time-consuming dialysis steps. These novel vectors, together with the described strategies of gene cloning, protein expression, and purification, may have wide applications in biosciences, agricultural, food technologies, and so forth.
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- 2018
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30. A universal mini-vector and an annealing of PCR products (APP)-based cloning strategy for convenient molecular biological manipulations
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Yifei Liu, Darren J. Hart, Shumin Xu, Hongling Wang, Yifeng Zhang, Tuoping Li, Xia Liu, Yingfeng An, Gao Herui, Song Gao, College of Biosciences and Biotechnology, Shenyang Agricultural University, College of Food Science, Institut de biologie structurale (IBS - UMR 5075 ), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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0301 basic medicine ,T-vector ,Computer science ,Genetic Vectors ,Biophysics ,Computational biology ,Molecular cloning ,Polymerase Chain Reaction ,Biochemistry ,TA cloning ,03 medical and health sciences ,Plasmid ,MESH: Genetic Vectors ,MESH: Plasmids ,Ligation-independent cloning ,Methods ,Multiple cloning site ,False positive paradox ,MESH: Cloning, Molecular ,Cloning, Molecular ,MESH: Methods ,Ligation ,Molecular Biology ,Sticky-end ligation ,2. Zero hunger ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,MESH: Polymerase Chain Reaction ,Cell Biology ,MESH: Ligation ,030104 developmental biology ,Protein expression ,Restriction digest ,Plasmids - Abstract
International audience; Currently, the most widely used strategies for molecular cloning are sticky-end ligation-based cloning, TA cloning, blunt-end ligation-based cloning and ligase-independent cloning. In this study we have developed a novel mini-vector pANY1 which can simultaneously meet the requirements of all these cloning strategies. In addition, the selection of appropriate restriction digestion sites is difficult in some cases because of the presence of internal sites. In this study, an annealing of PCR products (APP)-based sticky-end cloning strategy was introduced to avoid this issue. Additionally, false positives occur during molecular cloning, which increases the workload of isolating positive clones. The plasmid pANY1 contains a ccdB cassette between multiple cloning sites, which efficiently avoids these false positives. Therefore, this mini-vector should serve as a useful tool with wide applications in biosciences, agriculture, food technologies, etc.
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- 2018
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31. Transient radial spray from electrified viscous jets
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Shiyou Ke, Panlin Jin, Shumin Xu, Xieyuan Yin, Xiezhen Yin, and Fang Li
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Fluid Flow and Transfer Processes ,Mechanics of Materials ,Mechanical Engineering ,Computational Mechanics ,Condensed Matter Physics - Published
- 2021
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32. Construction of novel curdlan-based and Ca2+-chelated magnetic microspheres (CCMM) for efficient protein purification and oriented immobilization
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Xianghui Qi, Shuo Yao, Yifeng Zhang, Hongling Wang, Shumin Xu, Yingfeng An, Song Gao, and Xia Liu
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biology ,Iminodiacetic acid ,chemistry.chemical_element ,Bioengineering ,Curdlan ,Calcium ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Biochemistry ,Microsphere ,chemistry.chemical_compound ,chemistry ,Protein purification ,Xylanase ,Chelation ,Trichoderma reesei ,Biotechnology ,Nuclear chemistry - Abstract
In this study, curdlan-based and calcium ion (Ca2+)-chelated magnetic microspheres (CCMM) were prepared for protein purification and oriented immobilization. Additional purification steps before immobilization were not required. CCMM samples were produced by reverse embedding of Fe3O4 nanoparticles with curdlan and chelated with Ca2+ in the presence of iminodiacetic acid. The β-xylanase XynII from Trichoderma reesei QM6a was used to investigate the efficiency of CCMM preparation. The resulting CCMM-XynII was found to be very stable, showing 82 % and 60 % of initial activities after storage for 35 days and after being assayed ten times, respectively. In addition, the CCMM-XynII showed higher stabilities in the presence of organic solvents and multiple chemicals than the free XynII, suggesting that the CCMM-XynII could be efficient for applications requiring the presence of organic solvents. In addition, CCMM may be more suitable than commercially available Ni-NTA for purification of proteins intolerant of Ni2+.
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- 2021
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33. Temperature dependence of resistivity and crystallization behaviors of amorphous melt-spun ribbon of Mg66Zn30Gd4 alloy
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Shumin Xu, Jinfeng Leng, Zhang Jinyang, Xinying Teng, and Ge Xingjing
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010302 applied physics ,Materials science ,Mechanical Engineering ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Microstructure ,01 natural sciences ,Amorphous solid ,law.invention ,Crystallography ,Differential scanning calorimetry ,Chemical engineering ,Mechanics of Materials ,Electrical resistivity and conductivity ,law ,Transmission electron microscopy ,Phase (matter) ,0103 physical sciences ,General Materials Science ,Crystallization ,Selected area diffraction ,0210 nano-technology - Abstract
In this paper, the Mg-based Mg66Zn30Gd4 amorphous ribbons were successfully prepared using a single roller melt-spinning technique. Subsequently, the non-isothermal crystallization behaviors of alloy ribbons were investigated by differential scanning calorimetry (DSC) and resistivity method, and its crystallization process and microstructure were confirmed by X-ray, transmission electron microscope (TEM) and selected area electron diffraction (SAED). The results show that: the negative temperature coefficient of resistivity (TCR) exists in the crystallization process, and the crystallization process of melt-spun Mg66Zn30Gd4 ribbons consists of three steps. The first crystallization reaction at about 385 K is connected with the formation of the ICQ-phase, followed by the formation of the Mg7Zn3 binary phase and the Mg3(Gd, Zn) ternary phase (468–538 K), and then the formation of the α-Mg phase at about 538 K. Furthermore, the formation of the ICQ-phase reflects the heredity of icosahedral local order.
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- 2017
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34. Utterance-level Permutation Invariant Training with Latency-controlled BLSTM for Single-channel Multi-talker Speech Separation
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Gaofeng Cheng, Pengyuan Zhang, Yi Yang, Shumin Xu, Lu Huang, and Jiasong Sun
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FOS: Computer and information sciences ,Sound (cs.SD) ,Computer Science - Machine Learning ,Computer science ,Speech recognition ,Inference ,Tracing ,Electronic mail ,Computer Science - Sound ,Machine Learning (cs.LG) ,Audio and Speech Processing (eess.AS) ,FOS: Electrical engineering, electronic engineering, information engineering ,Task analysis ,Latency (engineering) ,Invariant (mathematics) ,Utterance ,Electrical Engineering and Systems Science - Audio and Speech Processing - Abstract
Utterance-level permutation invariant training (uPIT) has achieved promising progress on single-channel multi-talker speech separation task. Long short-term memory (LSTM) and bidirectional LSTM (BLSTM) are widely used as the separation networks of uPIT, i.e. uPIT-LSTM and uPIT-BLSTM. uPIT-LSTM has lower latency but worse performance, while uPIT-BLSTM has better performance but higher latency. In this paper, we propose using latency-controlled BLSTM (LC-BLSTM) during inference to fulfill low-latency and good-performance speech separation. To find a better training strategy for BLSTM-based separation network, chunk-level PIT (cPIT) and uPIT are compared. The experimental results show that uPIT outperforms cPIT when LC-BLSTM is used during inference. It is also found that the inter-chunk speaker tracing (ST) can further improve the separation performance of uPIT-LC-BLSTM. Evaluated on the WSJ0 two-talker mixed-speech separation task, the absolute gap of signal-to-distortion ratio (SDR) between uPIT-BLSTM and uPIT-LC-BLSTM is reduced to within 0.7 dB., Proceedings of APSIPA Annual Summit and Conference 2019, 18-21 November 2019, Lanzhou, China
- Published
- 2019
35. Coenzyme A thioester-mediated carbon chain elongation as a paintbrush to draw colorful chemical compounds
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Yu Deng, Tingting Hao, Shenghu Zhou, and Shumin Xu
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0106 biological sciences ,chemistry.chemical_classification ,0303 health sciences ,biology ,Chemistry ,Thiolase ,Coenzyme A ,Acetyl-CoA ,Bioengineering ,Thioester ,01 natural sciences ,Applied Microbiology and Biotechnology ,Combinatorial chemistry ,Carbon ,Metabolic engineering ,03 medical and health sciences ,chemistry.chemical_compound ,Malonyl-CoA ,Biosynthesis ,010608 biotechnology ,Polyketide synthase ,biology.protein ,030304 developmental biology ,Biotechnology - Abstract
The biosynthesis of various useful chemicals from simple substrates using industrial microorganisms is becoming increasingly crucial to address the challenge of dwindling non-renewable resources. As the most common intermediate substrates in organisms, Coenzyme A (CoA) thioesters play a central role in the carbon chain elongation process of their products. As a result, numerous of chemicals can be synthesized by the iterative addition of various CoA thioester extender units at a given CoA thioester primer backbone. However, these elongation reactions and the product yields are still restricted due to the low enzymatic performance and supply of CoA thioesters. This review highlights the current protein and metabolic engineering strategies used to enhance the diversity and product yield by coupling different primers, extender units, enzymes, and termination pathways, in an attempt to provide a road map for producing a more diverse range of industrial chemicals.
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- 2019
36. miR-205 Suppresses Pulmonary Fibrosis by Targeting GATA3 Through Inhibition of Endoplasmic Reticulum Stress
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Bingke Sun, Jianwen Bai, Tiancao Dong, Yanli Yan, Shumin Xu, Hongqiang Li, Yusheng Li, and Guizhen Zheng
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0301 basic medicine ,Pulmonary Fibrosis ,Pharmaceutical Science ,Down-Regulation ,GATA3 Transcription Factor ,Lung injury ,CHOP ,Bleomycin ,Collagen Type I ,Cell Line ,Rats, Sprague-Dawley ,Transforming Growth Factor beta1 ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Fibrosis ,In vivo ,Pulmonary fibrosis ,medicine ,Animals ,Reporter gene ,medicine.disease ,Endoplasmic Reticulum Stress ,Actins ,Rats ,Up-Regulation ,Blot ,Disease Models, Animal ,MicroRNAs ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Cancer research ,Biotechnology ,Protein Binding - Abstract
Objective: To investigate the role of miR-205 and GATA3 in Pulmonary Fibrosis (PF). Methods: Bleomycin (BLM) was used to induce PF in SD rats and in vitro PF model was established by using TGFβ1-induced RLE-6TN cells. miR-205 mimics were used for the overexpression of miR- 205. The expression of miR-205, GATA3, α-SMA, Collagen I, CHOP and GRP78 were measured using RT-qPCR or western blotting. Dual-luciferase reporter assay was used to confirm binding between GATA3 3’-UTR and miR-205. Results: The expression of miR-205 was significantly down-regulated, while the expression of GATA3 was remarkably up-regulated in the model rats. GATA3 levels were remarkably decreased when miR-205 was overexpressed. When miR-205 was overexpressed, the lung injury by BLM-induced fibrosis was improved. The expression of α-SMA, Collagen I, as well as GRP78 and CHOP, was significantly up-regulated in both in vivo and in vitro PF models, and overexpression of miR-205 remarkably reversed the effects. Dual-luciferase reporter assay showed that miR-205 directly targeted and negatively regulated GATA3. Conclusion: miR-205 improved pulmonary fibrosis through inhibiting ER-stress by targeting GATA3.
- Published
- 2019
37. Effects of Extrusion on Mechanical and Corrosion Resistance Properties of Biomedical Mg-Zn-Nd-xCa Alloys
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Shumin Xu, Xinying Teng, Peng Jia, Jinfeng Leng, Gui Lou, Min Zuo, Ye Zhijian, and Hao Wu
- Subjects
Materials science ,Biocompatibility ,Alloy ,microstructure ,chemistry.chemical_element ,engineering.material ,lcsh:Technology ,Article ,Corrosion ,magnesium alloys ,biocompatibility ,Ultimate tensile strength ,General Materials Science ,Composite material ,lcsh:Microscopy ,lcsh:QC120-168.85 ,corrosion resistance ,lcsh:QH201-278.5 ,lcsh:T ,Magnesium ,Microstructure ,mechanical property ,extrusion ,chemistry ,lcsh:TA1-2040 ,engineering ,lcsh:Descriptive and experimental mechanics ,Extrusion ,Grain boundary ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,lcsh:Engineering (General). Civil engineering (General) ,lcsh:TK1-9971 - Abstract
Magnesium alloys act as ideal biomedical materials with good biocompatibility. In this paper, the extruded biomedical Mg-6Zn-0.5Nd-0.5/0.8Ca alloys were prepared and their microstructure, mechanical properties and corrosion properties were investigated. The results showed that the surfaces of Mg-6Zn-0.5Nd-0.5/0.8Ca alloys extruded at medium temperature were smooth and compact without cracks. The tensile strength and elongation of Mg-6Zn-0.5Nd-0.5/0.8Ca alloys were 222.5 MPa and 20.2%, and 287.2 MPa and 18.4%, respectively. A large number of dislocations were generated in the grains and on grain boundaries after the extrusion. The alloy was immersed in simulating body fluid (SBF) for the weightlessness corrosion, and the corrosion products were analyzed by FTIR, SEM equipped with EDS. It was found that the corrosion rate of Mg-6Zn-0.5Nd-0.5Ca and Mg-6Zn-0.5Nd-0.8Ca alloy were 0.82 and 2.98 mm/a, respectively. Furthermore, the compact layer was formed on the surface of the alloy, which can effectively hinder the permeation of Cl&minus, and significantly improve the corrosion resistance of magnesium alloys.
- Published
- 2019
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38. [Blockade of programmed death-ligand 1 attenuates indirect acute lung injury in mice through targeting endothelial cells but not epithelial cells]
- Author
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Bingke, Sun, Xiuhua, Li, Guizhen, Zheng, Tiancao, Dong, Yusheng, Li, Hongqiang, Li, Yanli, Yan, Jianwen, Bai, and Shumin, Xu
- Subjects
Male ,Mice, Inbred C57BL ,Disease Models, Animal ,Mice ,Random Allocation ,Acute Lung Injury ,Animals ,Endothelial Cells ,Epithelial Cells ,B7-H1 Antigen - Abstract
To examine the expression profile of programmed death-ligand 1 (PD-L1) on lung endothelial or epithelial cells, and to determine the specific role of PD-L1 in mouse model of indirect acute lung injury (i-ALI).Eighty male C57BL/6 mice were randomly divided into two parts (both n = 40). The effects of different administration routes on the expression of PD-L1 were observed. The mice in each part were randomly divided into sham, i-ALI, i-ALI+small interfering RNA (siRNA) random sequence control, and i-ALI+PD-L1 siRNA which could specifically inhibit PD-L1 expression groups, with 10 mice in each group. i-ALI was reproduced in a mouse model of hemorrhagic shock in combination with a subsequent cecal ligation and puncture (CLP). In sham group, only bilateral femoral arteries were ligated without catheterization or bleeding, and only cecum was separated but perforation was not ligated. Intravenous or intratracheal delivery of PD-L1 siRNA was performed 2 hours following the resuscitation to suppress the expression of PD-L1 on lung endothelial or epithelial cells. The mice in i-ALI+siRNA random sequence control group were given siRNA random sequence without inhibition effect on PD-L1 expression, and those in sham group and i-ALI group were given 100 μL phosphate buffered saline (PBS). The mice were sacrificed at 24 hours after CLP, and samples of blood, lung tissue and bronchoalveolar lavage fluid (BALF) were harvested. Expressions of PD-L1 were determined with flow cytometry. Cytokines and chemokines in plasma, lung tissue and BALF were determined by enzyme linked immunosorbent assay (ELISA). The protein concentration in plasma and BALF and the activity of myeloperoxidase (MPO) in lung tissue were quantitatively measured. The pathological changes in lung tissue were observed under light microscope.(1) Compared with sham group, PD-L1 expression on lung endothelial or epithelial cells were significantly elevated in i-ALI group [endothelial cells: (27.88±1.53)% vs. (19.64±1.03)%, epithelial cells: (58.70±8.21)% vs. (29.23±3.94)%, both P0.05]. (2) Mice received intravenous delivery of liposomal-encapsulated siRNA had significantly lower expression of PD-L1 on lung endothelial cells as compared with that of i-ALI group [(21.37±0.76)% vs. (27.88±1.53)%, P0.05]. Intratracheal delivery of naked PD-L1 siRNA mainly inhibited the PD-L1 expression on epithelial cell as compared with that of i-ALI group [(31.23±4.71) % vs. (58.70±8.21) %, P0.05]. The expression of PD-L1 in pulmonary microvascular endothelial cells or pulmonary epithelial cells of i-ALI mice was not affected by siRNA random sequence. (3) PD-L1 silencing on pulmonary endothelial cells induced by intravenous delivery of PD-L1 siRNA led to a lower protein ratio of BALF/plasma [(4.48±0.35)×10PD-L1 silencing on endothelial cells but not epithelial cells protected mice against hemorrhagic shock-sepsis induced i-ALI.
- Published
- 2019
39. Bacterial community responses to the redox profile changes of mariculture sediment
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Rongjun Shi, Tingting Han, Honghui Huang, Qingzhi Zhu, Shumin Xu, and Zhanhui Qi
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0106 biological sciences ,Total organic carbon ,Geologic Sediments ,Bacteria ,biology ,Chemistry ,010604 marine biology & hydrobiology ,Alphaproteobacteria ,Sediment ,010501 environmental sciences ,Aquatic Science ,Oceanography ,biology.organism_classification ,01 natural sciences ,Pollution ,Carbon ,Benthic zone ,Environmental chemistry ,Gammaproteobacteria ,Desulfobacteraceae ,Mariculture ,Oxidation-Reduction ,Anaerobic exercise ,0105 earth and related environmental sciences - Abstract
Suspended mariculture has significantly influences on the benthic sediment. However, our understanding on how bacterial communities respond to mariculture induced changes in redox profiles is limited. In present study, sediments from two maricultures and reference areas were collected and incubated for 28 day. The results indicated that the dominant pathway of organic matter mineralization in the sediment varied from groups, in the reference, it was the iron reduction, but in the two mariculture groups it was the SO42− reduction. Remarkable changes of bacteria community were recorded in the aerobic zone, where the abundances of 14 OTUs belonging to Gammaproteobacteria and Alphaproteobacteria were significantly higher than that in oxidation and anaerobic zones. However, 4 keystone OTUs were strictly anaerobic and belonging to Desulfobacteraceae (n = 3) and Marinilabiaceae (n = 1). The main environmental drivers determining sediment bacterial distribution were the particle organic carbon, dissolve oxygen, NO3−, and moisture content.
- Published
- 2021
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40. Optimization of Micro-arc Oxidation Parameters for Preparing AlN Complex Ceramic Coatings on 1060 Al Substrate
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Benkui Gong, Lei Wang, Rui Feng, Shumin Xu, Xiangkui Yang, Cuiling Fan, Yaokun Pan, and Xiaopeng Chen
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History ,Materials science ,Chemical engineering ,visual_art ,Micro arc oxidation ,visual_art.visual_art_medium ,Substrate (printing) ,Ceramic ,Computer Science Applications ,Education - Published
- 2021
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41. Early Recruitment of IL-10-Producing B Cells Into Alveoli Improved the Resolution of Acute Lung Injury
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Jianwen Bai, Guang-Gang Li, Mingzheng Xu, Haihan Song, Chunmei Wang, and Shumin Xu
- Subjects
Male ,Pathology ,medicine.medical_specialty ,Physiology ,Inflammation ,Lung injury ,T-Lymphocytes, Regulatory ,lcsh:Physiology ,Flow cytometry ,lcsh:Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Acute lung injury ,Humans ,lcsh:QD415-436 ,Diffuse alveolar damage ,B cell ,Aged ,B-Lymphocytes ,medicine.diagnostic_test ,lcsh:QP1-981 ,business.industry ,Middle Aged ,Th1 Cells ,respiratory system ,Flow Cytometry ,Survival Analysis ,Interleukin-10 ,respiratory tract diseases ,Pulmonary Alveoli ,Interleukin 10 ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Immunology ,IL-10 ,Female ,medicine.symptom ,business ,Immunosuppressive Agents ,030215 immunology - Abstract
Background: Acute lung injury (ALI) is characterized by rapid induction of inflammation at the alveolar-capillary membrane, and immunosuppressive mechanisms were shown to contribute to its resolution. Despite the central role of lymphocytes in initiating and mediating an inflammatory response, their influx dynamics in ALI has not been examined. Methods: We collected mini-BAL samples from the lung of ALI patients over a maximum period of 7 days, and examined the lymphocyte composition. Results: CD3+CD4+IFN-gamma+ Th1 cells were detected early on in all patients examined, while IL-10-producing B cells and CD3+CD4+CD25hiFoxp3+ Treg cells appeared later. Interestingly, IL-10-producing B cells appeared earlier than Tregs in most subjects, which possibly exerted anti-inflammatory function before Tregs. We then found that in patients with earlier recruitment of IL-10-producing B cells, the magnitude of Th1 inflammation decreased significantly over time, which was not observed in patients with later recruitment of IL-10-producing B cells. Furthermore, early IL-10-producing B cell recruiters also had significantly earlier recruitment of Tregs and better survival than late IL-10-producing B cell recruiters. Conclusion: This study provided data on the alveolar infiltration of lymphocytes during ALI, which suggested an inhibitory role of IL-10-producing B cells in ALI and emphasized the importance of controlling inflammation during the initial stage of ALI.
- Published
- 2016
42. Superparamagnetic chitosan nanocomplexes for colorectal tumor-targeted delivery of irinotecan
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Xueling Zhang, Gensheng Yang, Huiying Wang, Danjun Wu, Lixi Zhu, Shumin Xu, Rui Wu, and Yi Li
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Drug ,Cell Survival ,Surface Properties ,Colorectal cancer ,Chemistry, Pharmaceutical ,media_common.quotation_subject ,Mice, Nude ,Pharmaceutical Science ,02 engineering and technology ,Irinotecan ,030226 pharmacology & pharmacy ,Chitosan ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Drug Stability ,Human Umbilical Vein Endothelial Cells ,medicine ,Animals ,Humans ,Tissue Distribution ,Particle Size ,media_common ,Drug Carriers ,Mice, Inbred BALB C ,HCT116 Cells ,021001 nanoscience & nanotechnology ,medicine.disease ,Polyelectrolytes ,Drug Liberation ,Polyglutamic Acid ,chemistry ,Targeted drug delivery ,Cancer cell ,Drug delivery ,Cancer research ,Nanomedicine ,Female ,Magnetic Iron Oxide Nanoparticles ,Topoisomerase I Inhibitors ,Colorectal Neoplasms ,0210 nano-technology ,medicine.drug - Abstract
Conventional chemotherapy is effective for metastatic tumors widely present in colorectal cancer patients; however, chemotherapy may cause severe systemic toxicity due to a lack of specificity towards cancer cells. Effective delivery systems that can enhance targeted drug delivery to the desired tumor site and simultaneously protect the activity of drugs are in high demand. To that end, this study developed chitosan-based polyelectrolyte complexes (PECs) with the orientation of superparamagnetic nanoparticles, which enables the targeting delivery of the first-line model drug irinotecan (IRT) to the tumor area under a magnetic field. Colloidal PECs were mildly and facilely fabricated with chitosan and poly(glutamic acid) (PGA) via an all-in-water process, excluding the use of any potentially toxic chemicals. Iso-dispersed superparamagnetic Fe3O4 nanoparticles with relatively small particle diameters (~10 nm) were embedded into the IRT-loaded nano-PECs. The optimized nano-PECs showed high drug encapsulation capacity and improved anti-colon cancer cell efficacy compared with the free drug. Furthermore, the magnetic nano-PECs exhibited effective internalization by colon tumor cells, and favorable tumor-targeting ability was demonstrated via in vivo biodistribution study. Therefore, this magnetic targeted drug delivery nano-PECs system provides a promising platform to overcome the side effects of conventional chemotherapy for colorectal cancer.
- Published
- 2020
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43. Radial deformation and disintegration of an electrified liquid jet
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Xie-Yuan Yin, Xie-Zhen Yin, Shumin Xu, Fang Li, and Shi-You Ke
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Fluid Flow and Transfer Processes ,Physics ,Mechanics of Materials ,Liquid jet ,Mechanical Engineering ,Computational Mechanics ,Mechanics ,Radial deformation ,Condensed Matter Physics - Published
- 2020
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44. [Evaluation value of human antibacterial peptide LL-37 on the prognosis of elderly patients with sepsis]
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Weina, Guo, Chunmei, Wang, Fangjie, Huo, Hongqiang, Li, Yanli, Yan, Shumin, Xu, Huihui, Xu, Yusheng, Li, Xiaoming, Zhang, and Jianwen, Bai
- Subjects
ROC Curve ,Predictive Value of Tests ,Cathelicidins ,Sepsis ,Humans ,Prognosis ,APACHE ,Aged ,Antimicrobial Cationic Peptides - Abstract
To evaluate the prognostic value of human antibacterial peptide LL-37 in elderly patients with sepsis.Elderly sepsis patients over 65-year-old satisfied the diagnostic criteria for sepsis and septic shock admitted to intensive care unit of East Hospital of Tongji University from January 2016 to December 2017 were enrolled (elderly sepsis group). Aged community-acquired pneumonia (CAP) patients hospitalized during the same period were enrolled as a control group for pneumonia, and the aged health check-ups served as a healthy control group during the same period. The peripheral blood LL-37 levels of all patients on the 1st, 3rd, 7th day of admission and the results on the day of physical examination in the healthy control group and on the day of admission in aged CAP group were recorded. C-reactive protein (CRP), arterial blood lactate (Lac), procalcitonin (PCT) were monitored, and acute physiology and chronic health evaluation II (APACHE II) and sequential organ failure assessment (SOFA) scores were calculated based on the worst values within 24 hours. The correlation between LL-37 and various indicators was analyzed by Spearman method. According to the 28-day clinical outcome, the elderly patients with sepsis were divided into survival group and non-survival group. The differences in all parameters between the two groups were compared. The statistically significant indicators were analyzed by receiver operating characteristic (ROC) curve, and the predictive value of each indicator for prognosis was evaluated.(1) A total of 113 elderly patients with sepsis were enrolled in the final analysis, including 67 patients in sepsis group and 46 patients in septic shock group. Thirty-two patients were enrolled as healthy controls and 31 elderly patients with CAP as elderly pneumonia group. The PCT, CRP, Lac, APACHE II and SOFA scores of the patients in the three groups were higher than those of the healthy control group, and they were gradually increased with the severity of infection. There was no significant difference in gender or age among the groups. Compared with the healthy control group, the other three groups had higher LL-37 level after admission, the LL-37 levels in the sepsis group and the septic shock group were decreased with the prolongation of the hospitalization time, and they were lower than the pneumonia group at 7 days after admission [LL-37 (μg/L): 1 403.9±501.9, 1 517.1±676.4 vs. 1 608.4±816.2, both P0.05]. It was shown by correlation analysis that the LL-37 level in peripheral blood of elderly patients with sepsis was significantly negatively correlated with APACHE II score (r = -0.329, P = 0.007) and SOFA score (r = -0.344, P = 0.005), but no significant correlation with Lac was found (r = -0.128, P = 0.311). (2) The 28-day survival analysis revealed that of the 113 elderly patients with sepsis, 54 (47.8%) survived at 28 days and 59 (52.2%) died. There was no significant difference in gender, age, PCT or CRP levels at 1 day after admission between the two groups. The 1-day Lac, APACHE II and SOFA scores of the patients in the non-survival group were significantly higher than those in the survival group, they were gradually increased with the prolongation of the hospitalization time, and they were significantly higher than those in the survival group at 7 days after admission [Lac (mmol/L): 2.4 (1.4, 4.4) vs. 1.0 (0.8, 1.7), APACHE II score: 21.77±5.85 vs. 13.74±4.99, SOFA score: 9.62±4.78 vs. 3.18±2.71, all P0.01]. With the prolongation of admission, there was no significant change in LL-37 level of peripheral blood in the survival group. The LL-37 level in the non-survival group showed a downward tendency, and it was significantly lower than that in the survival group at 7 days after admission (μg/L: 1 277.8±642.6 vs. 1 620.6±461.6, P0.05). It was shown by ROC curve analysis that the LL-37 in peripheral blood, Lac, APACHE II score and SOFA score at 7-day of admission of elderly patients with sepsis had predictive value for prognosis, and LL-37 had the best predicted effect for 28-day death, the area under the ROC curve (AUC) of LL-37 was 0.670, 95% confidence interval (95%CI) = 0.513-0.757, when the optimal cut-off value was 1 283.0 μg/L, the sensitivity was 75.7%, and the specificity was 61.5%.The expression of LL-37 increased in the early course of the disease in elderly patients with sepsis. However, as the disease progressed and worsened, the level of LL-37 had a decline tendency and was associated with death. The dynamic monitoring of LL-37 combined with APACHE II and SOFA scores had clinical guidance value in predicting the prognosis of sepsis in the elderly.
- Published
- 2018
45. A novel role for programmed cell death receptor ligand 2 in sepsis-induced hepatic dysfunction
- Author
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Tristen T. Chun, Craig P. Erickson, Shumin Xu, Eleanor A. Fallon, Marilyn Le, Chun-Shiang Chung, Andres Matoso, Alfred Ayala, Anne Lise Rossi, and Yaping Chen
- Subjects
0301 basic medicine ,Programmed cell death ,Physiology ,Programmed Cell Death 1 Receptor ,Inflammation ,Apoptosis ,Sepsis ,03 medical and health sciences ,0302 clinical medicine ,Physiology (medical) ,medicine ,Animals ,Receptor ,Cecum ,Hepatology ,Ligand ,Chemistry ,Liver Diseases ,Gastroenterology ,medicine.disease ,Programmed Cell Death 1 Ligand 2 Protein ,Mice, Inbred C57BL ,Disease Models, Animal ,030104 developmental biology ,Liver ,Cancer research ,Posttranslational modification ,030211 gastroenterology & hepatology ,medicine.symptom ,Hepatic dysfunction ,Research Article - Abstract
The liver is an organ that, when dysfunctional in a septic patient, is strongly associated with morbidity and mortality. Understanding the pathophysiology of liver failure during sepsis may lead to improved diagnostics and potential therapeutic targets. Historically, programmed cell death receptor (PD) ligand 1 (PD-L1) has been considered the primary ligand for its checkpoint molecule counterpart, PD-1, with PD-L2 rarely in the immunopathological spotlight. PD-1 and PD-L1 contribute to liver dysfunction in a murine cecal ligation and puncture (CLP) model of sepsis, but virtually nothing is known about PD-L2’s role in sepsis. Therefore, our central hypothesis was that sepsis-induced changes in hepatic PD-L2 expression contributed to worsened liver function and, subsequently, more pronounced morbidity and mortality. We found that although PD-L1 gene deficiency attenuated the hepatic dysfunction seen in wild-type mice after CLP, the loss of PD-L2 appeared to actually worsen indices of liver function along with a trend toward higher liver tissue vascular permeability. Conversely, some protective effects of PD-L2 gene deletion were noted, such as reduced liver/peritoneal bacterial load and reduced IL-6, IL-10, and macrophage inflammatory protein 2 levels following CLP. These diverse actions, as well as the unique expression pattern of PD-L2, may explain why no overt survival advantage could be witnessed in the septic PD-L2−/− mice. Taken together, these data suggest that although PD-L2 has some selective effects on the hepatic response seen in the septic mouse, these factors are not sufficient to alter septic mortality in this adult murine model. NEW & NOTEWORTHY Our study shows not only that ligands of the checkpoint protein PD-1 respond inversely to a stressor such as septic challenge (PD-L2 declines, whereas PD-L1 rises) but also that aspects of liver dysfunction increase in septic mice lacking the PD-L2 gene. Furthermore, these differences in PD-L2 gene-deficient animals culminated in the abrogation of the survival advantage seen in the septic PD-L1-knockout mice, suggesting that PD-L2 may have roles beyond a simple immune tolerogen.
- Published
- 2018
46. Application of Surveying and Mapping and Digital Technology
- Author
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Shumin Xu
- Abstract
With the continuous development of the entire economy, society, and science and technology, the entire earth surveying and mapping technology is also constantly upgrading and developing. With the deepening of digitization, the development of digital surveying and mapping technology has gradually strengthened. Geographical surveying and mapping work plays an important role in the socio-economic development of the entire country and region. The essence and connotation of digital surveying and mapping technology is to serve geographic space and digital technology, and gradually develop to all aspects and deeper disciplines. In the surveying and mapping work, it is necessary to gradually improve the management of the entire digital surveying and mapping technology, continuously improve the service capabilities, and develop the entire surveying and mapping technology to a higher level.
- Published
- 2018
- Full Text
- View/download PDF
47. Detection and Structural Characterization of Nucleophiles Trapped Reactive Metabolites of Limonin Using Liquid Chromatography-Mass Spectrometry
- Author
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Ping Wang, Qing Yu, Shumin Xu, Nailong Yang, Chengqian Li, Yudong Fu, and Deng Yujie
- Subjects
0301 basic medicine ,animal structures ,Article Subject ,Limonin ,Stereochemistry ,General Chemical Engineering ,Lysine ,lcsh:Analytical chemistry ,Mass spectrometry ,Analytical Chemistry ,Adduct ,03 medical and health sciences ,chemistry.chemical_compound ,Liquid chromatography–mass spectrometry ,Instrumentation ,chemistry.chemical_classification ,lcsh:QD71-142 ,Chemistry ,Glutathione ,Computer Science Applications ,body regions ,030104 developmental biology ,Enzyme ,embryonic structures ,Cysteine ,Research Article - Abstract
Limonin (LIM), a furan-containing limonoid, is one of the most abundant components of Dictamnus dasycarpus Turcz. Recent studies demonstrated that LIM has great potential for inhibiting the activity of drug-metabolizing enzymes. However, the mechanisms of LIM-induced enzyme inactivation processes remain unexplored. The main objective of this study was to identify the reactive metabolites of LIM using liquid chromatography-mass spectrometry. Three nucleophiles, glutathione (GSH), N-acetyl cysteine (NAC), and N-acetyl lysine (NAL), were used to trap the reactive metabolites of LIM in in vitro and in vivo models. Two different types of mass spectrometry, a hybrid quadrupole time-of-flight (Q-TOF) mass spectrometry and a LTQ velos Pro ion trap mass spectrometry, were employed to acquire structural information of nucleophile adducts of LIM. In total, six nucleophile adducts of LIM (M1–M6) with their isomers were identified; among them, M1 was a GSH and NAL conjugate of LIM, M2–M4 were glutathione adducts of LIM, M5 was a NAC and NAL conjugate of LIM, and M6 was a NAC adduct of LIM. Additionally, CYP3A4 was found to be the key enzyme responsible for the bioactivation of limonin. This metabolism study largely facilitates the understanding of mechanisms of limonin-induced enzyme inactivation processes.
- Published
- 2018
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48. Protective effects of edaravone combined puerarin on inhalation lung injury induced by black gunpowder smog
- Author
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Zhengguan Wang, Wenyan Chen, Ruibing Li, Yifan Liu, Shumin Xu, Xiaoting Liu, Chengbin Wang, Jinyang Duan, Yi-hong Chen, and Yuni Guo
- Subjects
Male ,medicine.medical_specialty ,Immunology ,Pharmacology ,Lung injury ,Proinflammatory cytokine ,chemistry.chemical_compound ,Puerarin ,Edaravone ,medicine ,Animals ,Immunology and Allergy ,Rats, Wistar ,Lung ,Inhalation Exposure ,Smog ,Inhalation ,Lung Injury ,Organ Size ,Isoflavones ,Disease Models, Animal ,medicine.anatomical_structure ,chemistry ,Anesthesia ,Arterial blood ,Drug Therapy, Combination ,Histopathology ,Bronchoalveolar Lavage Fluid ,Antipyrine - Abstract
The present study aimed to investigate the combined effects of puerarin with edaravone on inhalation lung injury induced by black gunpowder smog.Male Wistar rats were divided into five groups (control group, edaravone group, puerarin group, edaravone combined with puerarin group and inhalation group). The severity of pulmonary injuries was evaluated after inducing acute lung injury. Arterial blood gas, inflammatory cytokines, biochemical, parameters, cell counting, W/D weight ratio and histopathology were analyzed. Results in lung tissues, either edaravone or puerarin treatment alone showed significant protective effects against neutrophil infiltration and tissue injury, as demonstrated by myeloperoxidase activity and histopathological analysis (all p0.05). In addition, combined treatment with both edaravone and puerarin demonstrated additive protective effects on smog-induced lung injury, compared with single treatment.Combination of edaravone and puerarin shows promise as a new treatment option for acute lung injury/acute respiratory distress syndrome patients.
- Published
- 2015
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49. Stimulatory role of interleukin 10 in CD8
- Author
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Jianjun, Xi, Mingzheng, Xu, Zongchang, Song, Hongqiang, Li, Shumin, Xu, Chunmei, Wang, Haihan, Song, and Jianwen, Bai
- Subjects
Adult ,CD4-Positive T-Lymphocytes ,Male ,CD3 Complex ,gastric cancer ,CD8-Positive T-Lymphocytes ,Middle Aged ,Interleukin-10 ,Interferon-gamma ,STAT Transcription Factors ,Interleukin 10 ,CD28 Antigens ,Stomach Neoplasms ,Humans ,Female ,Receptors, Interleukin-10 ,Original Article ,Aged ,Cell Proliferation ,Neoplasm Staging - Abstract
CD8+ T cells are considered to be critical in tumor surveillance and elimination. Increased CD8+ T cell frequency and function is associated with better prognosis in cancer patients. Interleukin 10 is a cytokine with controversial roles in CD8+ T cell–mediated anti-tumor immunity. We therefore examined the interleukin 10 expression and consumption in CD8+ T cells harvested from the peripheral blood and resected tumors of gastric cancer patients of stages II–IV. We found that the gastric cancer patients presented significantly elevated frequencies of interleukin 10–expressing cells in both CD4+ and CD8+ T cells compared to healthy controls. But distinctive from the interleukin 10–expressing CD4+ T cells, which increased in frequency in advanced cancer, the interleukin 10–expressing CD8+ T cells did not increase with cancer stage in the peripheral blood and actually decreased with cancer stage in resected tumor. Interleukin 10 and interleukin 10 receptor expression was also enriched in interferon gamma–expressing activated CD8+ T cells. Compared to interleukin 10–nonexpressing CD8+ T cells, interleukin 10 receptor–expressing CD8+ T cells secreted significantly elevated interferon gamma levels. Treatment of anti-CD3/CD28-stimulated, purified CD8+ T cells with interleukin 10 alone could significantly enhance CD8+ T cell survival, an effect dependent on interleukin 10 receptor expression. Interleukin 10 also increased CD8+ T cell proliferation synergistically with interferon gamma but not alone. Analysis of downstream signal transducer and activator of transcription molecules showed that interleukin 10 treatment significantly increased the phosphorylation of signal transducer and activator of transcription 3 and signal transducer and activator of transcription 1 to lesser extent. Together, these results demonstrate that interleukin 10 possessed stimulatory roles in activated CD8+ T cells from gastric cancer patients.
- Published
- 2017
50. CD86 Polymorphism Affects Pneumonia-Induced Sepsis by Decreasing Gene Expression in Monocytes
- Author
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Tingting Cheng, Haihan Song, Hongqiang Li, Jianwen Bai, Mingzheng Xu, Bingke Sun, Lunxian Tang, Qian Yang, Xiaowei Bao, Guang-Gang Li, and Shumin Xu
- Subjects
Male ,Regulation of gene expression ,CD86 ,Immunology ,Pneumonia ,Odds ratio ,Middle Aged ,Biology ,medicine.disease ,Polymorphism, Single Nucleotide ,Monocytes ,Sepsis ,Pathogenesis ,Gene Expression Regulation ,Gene expression ,Genotype ,medicine ,Humans ,Immunology and Allergy ,Female ,B7-2 Antigen ,Gene - Abstract
Sepsis, a clinical syndrome occurring in patients following infection or injury, is a leading cause of morbidity and mortality worldwide. CD86 (B7-2) is a costimulatory molecule on antigen-presenting cells and plays critical roles in immune responses. In the current study, we investigated the association of two CD86 polymorphisms, rs1129055G/A and rs17281995G/C, with susceptibility to pneumonia-induced sepsis and examined the effects of these two polymorphisms on gene expression in monocytes. CD86 rs1129055G/A and rs17281995G/C were identified in 192 pneumonia-induced septic patients and 201 healthy controls. Data showed that frequencies of the rs1129055GA and AA genotypes were significantly lower in patients than in controls (odds ratio [OR] = 0.57, 95 % confidence interval [CI], 0.35–0.93, p = 0.023, and OR = 0.40, 95 % CI, 0.23–0.71, p = 0.002). Interestingly, the other polymorphism, rs17281995G/C, revealed significantly increased numbers in pneumonia-induced sepsis compared to controls (OR = 1.85, 95 % CI, 1.07–3.20, p = 0.025). Further analyses about CD86 gene expression revealed that both messenger RNA (mRNA) and protein levels of CD86 were downregulated in monocytes from controls carrying rs17281995GC genotype than those carrying wild-type rs17281995GG genotype (p = 0.022 and p = 0013). These results suggest that polymorphisms in CD86 gene have diverse effects on the pathogenesis of pneumonia-induced sepsis, in which rs17281995G/C may increase the risk of the disease by interfering gene expression of CD86 in monocytes.
- Published
- 2014
- Full Text
- View/download PDF
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