142 results on '"Shuli, Liang"'
Search Results
2. The regulatory function of lncRNA and constructed network in epilepsy
- Author
-
Suhui Kuang, Jiaqi Wang, Zhirong Wei, Feng Zhai, and Shuli Liang
- Subjects
Psychiatry and Mental health ,Neurology (clinical) ,Dermatology ,General Medicine - Published
- 2023
- Full Text
- View/download PDF
3. Overproduction of Patchoulol in Metabolically Engineered Komagataella phaffii
- Author
-
Guangjuan Luo, Ying Lin, Shuting Chen, Ruiming Xiao, Jiaxin Zhang, Cheng Li, Anthony J. Sinskey, Lei Ye, and Shuli Liang
- Subjects
General Chemistry ,General Agricultural and Biological Sciences - Published
- 2023
- Full Text
- View/download PDF
4. Discovery of a Novel Oral Proteasome Inhibitor to Block NLRP3 Inflammasome Activation with Anti-inflammation Activity
- Author
-
Xinyi Wu, Ping Sun, Xiuhui Chen, Lei Hua, Haowei Cai, Zhuorong Liu, Cheng Zhang, Shuli Liang, Yanhong Chen, Dan Wu, Yitao Ou, Wenhui Hu, and Zhongjin Yang
- Subjects
Mice, Inbred C57BL ,Mice ,Proteasome Endopeptidase Complex ,Inflammasomes ,Interleukin-1beta ,NLR Family, Pyrin Domain-Containing 3 Protein ,Drug Discovery ,Anti-Inflammatory Agents ,Animals ,Molecular Medicine ,Proteasome Inhibitors - Abstract
NLRP3 inflammasome activation plays a critical role in inflammation-related disorders. More small-molecule entities are needed to study the mechanism of NLRP3 inflammasome activation and to validate the efficacy and safety of the NLRP3 pathway. Herein, we report the discovery of an orally bioavailable proteasome inhibitor NIC-0102 (
- Published
- 2022
- Full Text
- View/download PDF
5. Progress of clinical research studies on tuberous sclerosis complex‐related epilepsy in China
- Author
-
Tinghong, Liu, Feng, Chen, Feng, Zhai, and Shuli, Liang
- Subjects
Drug Resistant Epilepsy ,Epilepsy ,Neurology ,Tuberous Sclerosis ,Humans ,Neurology (clinical) ,General Medicine ,Diet, Ketogenic - Abstract
Tuberous sclerosis complex (TSC) is an autosomal dominant neurocutaneous syndrome, with 75.6%-83.5% and 54.1% patients presenting with epilepsy and drug-resistant epilepsy (DRE), respectively. Clinical studies on TSC, particularly surgical interventions, have achieved rapid and substantial progress. The TSC-Task Force Committee of the China Association Against Epilepsy (CAAE-TFTSC) was founded in 2012, and annual academic conferences on the surgical treatment of TSC-related epilepsy have been held since 2013. 'China experts' consensus on surgical treatment of TSC-related epilepsy' was published in 2019. This review focuses on surgical treatment, including resective surgery, neuromodulations, corpus callosotomy and mini-invasive ablations, as well as studies on phenotype, genotype and anti-seizure therapies of mammalian target of rapamycin inhibitor, vigabatrin and ketogenic diet in patients with TSC-related DRE in China.
- Published
- 2022
- Full Text
- View/download PDF
6. Effect of current conduction for local epileptiform discharges in patients with temporal lobe epilepsy
- Author
-
Shaohui Zhang, Yangshuo Wang, Chunxiu Liu, Liu Yuan, Feng Zhai, Tinghong Liu, and Shuli Liang
- Subjects
Psychiatry and Mental health ,Epilepsy, Temporal Lobe ,Humans ,Electroencephalography ,Neurology (clinical) ,Dermatology ,General Medicine ,Amygdala ,Hippocampus ,Magnetic Resonance Imaging ,Temporal Lobe - Abstract
The effects of current conduction were researched to confirm that it can decrease focal epileptogenicity in patients with temporal lobe epilepsy (TLE).Data from 13 patients with mesial TLE were collected. After no less than two habitual seizures were captured during stereo-electroencephalogram monitoring, current conduction was measured in the hippocampus to a homemade, zero potential circuit board. The interictal spike, ripple, fast ripple, and ictal epileptogenicity index (EI) changes were analyzed in the hippocampus, amygdala, and anterior and middle temporal neocortex regions.Significant differences were found in the percentage of patients without spikes in the temporal neocortex between pre- and post-current conduction. Significant decreases in average ripple rates were found in the hippocampus and amygdala after current conduction. The percentage of fast ripple rate decrease in the hippocampus and amygdala was significantly higher than that in the temporal neocortex, and significant decreases were found in the fast ripple rate in the hippocampus from post- to pre-current conduction. Significant decreases were found in the EI values after current conduction in the amygdala and middle temporal lobe compared to the EI values before current conduction.After current conduction in patients with TLE, the spike rate decreases in the hippocampus, amygdala, and anterior and middle temporal neocortex, the ripple rate decreases in the hippocampus and amygdala, the fast ripple decreases in the hippocampus, and the EI decreases in the amygdala and middle temporal neocortex. Current conduction can reduce epileptogenicity in the hippocampus in mesial TLE.
- Published
- 2022
- Full Text
- View/download PDF
7. Diagnostic value of high-frequency oscillations for the epileptogenic zone: A systematic review and meta-analysis
- Author
-
Yangshuo Wang, Jinshan Xu, Tinghong Liu, Feng Chen, Shuai Chen, Liu Yuan, Feng Zhai, and Shuli Liang
- Subjects
Epilepsy ,Neurology ,Humans ,Neurology (clinical) ,General Medicine ,Biomarkers - Abstract
Delineation of the epileptogenic zone (EZ) is crucial during resective surgery in patients with epilepsy. In recent years, high-frequency oscillations, including fast ripples and ripples, have been considered promising biomarkers of the EZ. The objective of this study was to perform a systematic review and meta-analysis to evaluate the diagnostic accuracy of fast ripples and ripples in identifying EZs.The PubMed, Embase, and Cochrane databases were searched systematically. The review process followed the Preferred Reporting Items for Systematic Reviews and Meta-analyses guidelines. A bivariate mixed-effects regression approach was used to obtain summary estimates of the sensitivity and specificity of fast ripples and ripples.Thirteen studies were included in this review (12 for fast ripples and eight for ripples). Fast ripples had a pooled sensitivity of 0.80 (95% confidence interval [CI], 0.62-0.91), a specificity of 0.72 (95% CI, 0.55-0.85), and a summary area under the curve of 0.82 (95% CI, 0.79-0.86). The threshold effect was detected for ripples, and the summary area under the curve was 0.75 (95% CI, 0.71-0.79), with a sensitivity of 0.38 (95% CI, 0.18-0.64) and specificity of 0.90 (95% CI, 0.70-0.97).Fast ripples are a biomarker of the EZ with moderate diagnostic accuracy; in contrast, ripples are not as effective.
- Published
- 2022
- Full Text
- View/download PDF
8. Preparation of freeze‐dried bioluminescent bacteria and their application in the detection of acute toxicity of bisphenol A and heavy metals
- Author
-
Jun Yang, Shulin Hu, Anqi Liao, Yetian Weng, Shuli Liang, and Ying Lin
- Subjects
Food Science - Abstract
Current chemical analysis approaches for contaminants have failed to reveal their biotoxicity. Moreover, conventional bioassays are time consuming and exhibit poor repeatability. In this study, we performed the acute toxicity detection of various contaminants (chromium (Cr), cadmium (Cd), lead (Pb), arsenic (As), mercury (Hg), tin (Sn), nickel (Ni), and bisphenol A (BPA)) with four bioluminescent bacteria (
- Published
- 2022
- Full Text
- View/download PDF
9. Independent temporal lobe epilepsy in patients with tuberous sclerosis complex
- Author
-
Tinghong Liu, Jing Ding, Shaohui Zhang, Yangshuo Wang, Jinshan Xu, Liu Yuan, Feng Zhai, Guojun Zhang, and Shuli Liang
- Subjects
Pediatrics, Perinatology and Child Health - Abstract
Tuberous sclerosis complex (TSC) is a rare disease that involves multiple organs, including the brain; approximately 80%-90% of TSC patients exhibit TSC-associated epilepsy. Independent temporal lobe epilepsy (TLE), TSC-unrelated epilepsy, is particularly rare in patients with TSC. Here, we describe three patients with TSC with independent TLEs that were confirmed by stereo-electroencephalography (EEG), postoperative pathological findings, and seizure outcome at follow-up. The patients were retrospectively enrolled at two centers; their ictal epileptiform discharge onsets were determined using electrode contacts in the hippocampus during stereo-EEG. The three patients underwent anterior temporal lobectomies and remained seizure-free at 1-5 years after surgery. Postoperative pathological examinations confirmed hippocampal sclerosis in all three patients. Furthermore, postoperative intelligence quotient improvement was evident in one patient, while the quality of life was improved in two patients at 12 months after surgery.
- Published
- 2022
- Full Text
- View/download PDF
10. Back Cover Image, Volume 120, Number 4, April 2023
- Author
-
Qingyan Yuan, Minhui Wu, Yibo Liao, Shuli Liang, Yuan Lu, and Ying Lin
- Subjects
Bioengineering ,Applied Microbiology and Biotechnology ,Biotechnology - Published
- 2023
- Full Text
- View/download PDF
11. Factors that Influence Subdural Hemorrhage Secondary to Intracranial Arachnoid Cysts in Children
- Author
-
Jinshan Xu, Jiaqi Wang, Tinghong Liu, Yangshuo Wang, Feng Chen, Liu Yuan, Feng Zhai, Ming Ge, and Shuli Liang
- Subjects
Surgery ,Neurology (clinical) - Published
- 2023
- Full Text
- View/download PDF
12. A Novel and Efficient Genome Editing Tool Assisted by CRISPR-Cas12a/Cpf1 for Pichia pastoris
- Author
-
Shuli Liang, Xueyun Zheng, Siqi Peng, Yanru Li, Songjie Gu, Ying Lin, and Xinying Zhang
- Subjects
Genome evolution ,CRISPR/Cpf1 ,Biomedical Engineering ,General Medicine ,Computational biology ,Biology ,biology.organism_classification ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Pichia pastoris ,Synthetic biology ,Genome editing ,CRISPR ,Heterologous expression ,Gene - Abstract
Pichia pastoris has been widely exploited for the heterologous expression of proteins in both industry and academia. Recently, it has been shown to be a potentially good chassis host for the production of high-value chemicals and pharmaceuticals. Effective synthetic biology tools for genetic engineering are essential for industrial and biotechnological research in this yeast. Here, we describe a novel and efficient genome editing method mediated by the CRISPR-Cpf1 system, which could facilitate the deletion of large DNA fragments and integration of multiplexed gene fragments. The CRISPR-Cpf1 system exhibited a precise and high editing efficiency for single-gene disruption (99 ± 0.8%), duplex genome editing (65 ± 2.5% to 80 ± 3%), and triplex genome editing (30 ± 2.5%). In addition, the deletion of large DNA fragments of 20kb and one-step integration of multiple genes were first achieved using the developed CRISPR-Cpf1 system. Taken together, this study provides an efficient and simple gene editing tool for P. pastoris. The novel multiloci gene integration method mediated by CRISPR-Cpf1 may accelerate the ability to engineer this methylotrophic yeast for metabolic engineering and genome evolution in both biotechnological and biomedical applications.
- Published
- 2021
- Full Text
- View/download PDF
13. Rapid prototyping enzyme homologs to improve titer of nicotinamide mononucleotide using a strategy combining cell-free protein synthesis with split GFP
- Author
-
Qingyan Yuan, Minhui Wu, Yibo Liao, Shuli Liang, Yuan Lu, and Ying Lin
- Subjects
Bioengineering ,Applied Microbiology and Biotechnology ,Biotechnology - Abstract
Engineering biological systems to test new pathway variants containing different enzyme homologs is laborious and time-consuming. To tackle this challenge, a strategy was developed for rapidly prototyping enzyme homologs by combining cell-free protein synthesis (CFPS) with split GFP. This strategy featured two main advantages: 1) dozens of enzyme homologs were parallelly produced by CFPS within hours, and 2) the expression level and activity of each homolog was determined simultaneously by using the split GFP assay. As a model, this strategy was applied to optimize a 3-step pathway for nicotinamide mononucleotide (NMN) synthesis. Ten enzyme homologs from different organisms were selected for each step. Here, the most productive homolog of each step was identified within 24 h rather than weeks or months. Finally, the titer of NMN was increased to 1213 mg/L by improving physiochemical conditions, tuning enzyme ratios and cofactor concentrations, and decreasing the feedback inhibition, which was a more than 12-fold improvement over the initial setup. This strategy would provide a promising way to accelerate design-build-test cycles for metabolic engineering to improve the production of desired products. This article is protected by copyright. All rights reserved.
- Published
- 2022
- Full Text
- View/download PDF
14. Association of human gut microbiota composition and metabolic functions with Ficus hirta Vahl dietary supplementation
- Author
-
Ruiming Xiao, Guangjuan Luo, Wanci Liao, Shuting Chen, Shuangyan Han, Shuli Liang, and Ying Lin
- Subjects
Public Health, Environmental and Occupational Health ,Food Science - Abstract
Ficus hirta Vahl (FHV), a traditional herbal ingredient of the tonic diet, receives increasing popularity in southern China. However, it is largely unknown that how a FHV diet (FHVD) affects the human gut microbiome. In this exploratory study, a total of 43 healthy individuals were randomized into the FHVD (n = 25) and Control (n = 18) groups to receive diet intervention for 8 weeks. 16S rRNA gene sequencing, metagenomic sequencing and metabolic profile of participants were measured to assess the association between FHV diet and gut microbiome. A preservation effect of Faecalibacterium and enrichment of Dialister, Veillonella, Clostridium, and Lachnospiraceae were found during the FHVD. Accordingly, the pathway of amino acid synthesis, citrate cycle, coenzyme synthesis, and partial B vitamin synthesis were found to be more abundant in the FHVD. In addition, serine, glutamine, gamma-aminobutyric acid, tryptamine, and short-chain fatty acids (SCFAs) were higher after the FHVD. The conjoint analysis of FHV components and in-vitro fermentation confirmed that the improved SCFAs concentration was collectively contributed by the increasing abundance of key enzyme genes and available substrates. In conclusion, the muti-omics analysis showed that the FHVD optimized the structure of the gut microbial community and its metabolic profile, leading to a healthy tendency, with a small cluster of bacteria driving the variation rather than a single taxon.
- Published
- 2022
- Full Text
- View/download PDF
15. Artemisinin-derived artemisitene blocks ROS-mediated NLRP3 inflammasome and alleviates ulcerative colitis
- Author
-
Lei Hua, Shuli Liang, Yinghua Zhou, Xinyi Wu, Haowei Cai, Zhuorong Liu, Yitao Ou, Yanhong Chen, Xiuhui Chen, Yuyun Yan, Dan Wu, Ping Sun, Wenhui Hu, and Zhongjin Yang
- Subjects
Pharmacology ,Antimalarials ,Inflammasomes ,Immunology ,NLR Family, Pyrin Domain-Containing 3 Protein ,Immunology and Allergy ,Humans ,Colitis, Ulcerative ,Reactive Oxygen Species ,Artemisinins - Abstract
Artemisinins are well-known antimalarial drugs with clinical safety. In addition to antimalarial effects, their anti-inflammatory and immunoregulatory properties have recently attracted much attention in the treatment of inflammatory diseases. However, these artemisinins only have sub-millimolar anti-inflammatory activity in vitro, which may pose a high risk of toxicity in vivo with high doses of artemisinins. Here, we identified another derivative, artemisitene, which can increase the activity of inhibiting the NLRP3 pathway by more than 200-fold through introducing a covalent binding group while retaining the peroxide bridge structure. Mechanistically, artemisitene inhibits the production of ROS (especially mtROS) and prevents the assembly and activation of NLRP3 inflammasome, thereby inhibiting IL-1β production. In addition, it can also block IL-1β secretion mediated by NLRC4 and AIM2 inflammasome and IL-6 production. Furthermore, treatment with artemisitene significantly attenuated inflammatory response in DSS-induced ulcerative colitis. Our work provides a potential artemisinin derivative, which is worthy of further structural optimization based on pharmacokinetic properties as a drug candidate for inflammatory disorders.
- Published
- 2022
16. Recent Applications of Different Microstructure Designs in High Performance Tactile Sensors: A Review
- Author
-
Chunxiu Liu, Xuguang Sun, Ming Zhao, Ning Xue, Tiezhu Liu, Shuli Liang, Jun Zhou, and Lei Yao
- Subjects
Computer science ,media_common.quotation_subject ,010401 analytical chemistry ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Electronic skin ,Tactile perception ,01 natural sciences ,Field (computer science) ,0104 chemical sciences ,Perception ,Electronic engineering ,Sensitivity (control systems) ,Electrical and Electronic Engineering ,Instrumentation ,Tactile sensor ,media_common - Abstract
Flexible tactile sensors have become one of the most attractive research areas because of its great application prospect in electronic skin, healthcare monitoring and artificial intelligence. However, there are still great challenges in mimicking the human skin’s strong ability of tactile perception to the changes of external physical information. Nowadays, in addition to flexible polymers and conductive materials, the microstructure of sensing units is a key factor to improve the performance of tactile sensors such as sensitivity, fast response and robustness. In recent years, a variety of novel microstructure designs have been applied to applications of tactile information perception and numerous corresponding processing methods have also been developed, which provides a wealth of enlightening solutions for the production of electronic skins. Herein, a large number of research results of tactile sensor devices are systematically reviewed according to different three-dimensional geometric shapes of the microstructures which are grouped into several categories. At the same time, relevant processing technologies employed, working principles and chief performance characteristics are also briefly described. Relative merits of different types of microstructure applications are clearly elaborated through the classification and comparison of multiple microstructure geometries in this paper to provide valuable reference for sensing microstructure design and fabrication of tactile sensors in corresponding engineering applications. Moreover, current difficulties and challenges in fabrication of flexible microstructures and future investigative directions pertaining to this field have been discussed.
- Published
- 2021
- Full Text
- View/download PDF
17. Multi-scale goal distance representations in human hippocampus during virtual spatial navigation
- Author
-
Jiali Liu, Dong Chen, Xue Xiao, Hui Zhang, Wenjing Zhou, Shuli Liang, Lukas Kunz, Andreas Schulze-Bonhage, Nikolai Axmacher, and Liang Wang
- Subjects
General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Published
- 2023
- Full Text
- View/download PDF
18. Author response for 'Progress of clinical research studies on tuberous sclerosis complex‐related epilepsy in China'
- Author
-
null Tinghong Liu, null Feng Chen, null Feng Zhai, and null Shuli Liang
- Published
- 2022
- Full Text
- View/download PDF
19. A Kinetic Simulation Mechanism of Torque-Free Satellites Based on A Mobile Parallel Manipulator
- Author
-
Hao Chi, Yu Liu, Shuli Liang, Ken Chen, and Jiwen Zhang
- Published
- 2022
- Full Text
- View/download PDF
20. Construction of luminescent Escherichia coli via expressing lux operons and their application on toxicity test
- Author
-
Jun Yang, Shulin Hu, Minhui Wu, Anqi Liao, Shuli Liang, and Ying Lin
- Subjects
Lead ,Metals, Heavy ,Luminescent Measurements ,Operon ,Toxicity Tests ,Escherichia coli ,General Medicine ,Mercury ,Applied Microbiology and Biotechnology ,Biotechnology ,Cadmium - Abstract
Recombinant luminescent Escherichia coli strains could be used to detect the toxicity of pure or mixed contaminants as a light-off sensor. In this work, the lux operon of Photobacterium phosphoreum T3 was identified for the first time. Recombinant luminescent E. coli strains were constructed via expressing the lux operons of P. phosphoreum T3 and Vibrio qinghaiensis Q67 in E. coli MG1655, and the optimal protectant containing 10% (w/v) trehalose and 4% sucrose was used to prepare the freeze-dried recombinant luminescent E. coli cells. Then, these freeze-dried E. coli cells were subjected to acute toxicity detection. The results showed that luminescent E. coli strains displayed sensitive toxic responses to BPA, nFe
- Published
- 2022
21. Wearable and flexible electrochemical sensors for sweat analysis: a review
- Author
-
Fupeng Gao, Chunxiu Liu, Lichao Zhang, Tiezhu Liu, Zheng Wang, Zixuan Song, Haoyuan Cai, Zhen Fang, Jiamin Chen, Junbo Wang, Mengdi Han, Jun Wang, Kai Lin, Ruoyong Wang, Mingxiao Li, Qian Mei, Xibo Ma, Shuli Liang, Guangyang Gou, and Ning Xue
- Subjects
Materials Science (miscellaneous) ,Electrical and Electronic Engineering ,Condensed Matter Physics ,Industrial and Manufacturing Engineering ,Atomic and Molecular Physics, and Optics - Abstract
Flexible wearable sweat sensors allow continuous, real-time, noninvasive detection of sweat analytes, provide insight into human physiology at the molecular level, and have received significant attention for their promising applications in personalized health monitoring. Electrochemical sensors are the best choice for wearable sweat sensors due to their high performance, low cost, miniaturization, and wide applicability. Recent developments in soft microfluidics, multiplexed biosensing, energy harvesting devices, and materials have advanced the compatibility of wearable electrochemical sweat-sensing platforms. In this review, we summarize the potential of sweat for medical detection and methods for sweat stimulation and collection. This paper provides an overview of the components of wearable sweat sensors and recent developments in materials and power supply technologies and highlights some typical sensing platforms for different types of analytes. Finally, the paper ends with a discussion of the challenges and a view of the prospective development of this exciting field.
- Published
- 2022
22. Multi-omics analysis revealed the association of human gut microbiota composition and metabolic functions with the daily diet of the additive Ficus hirta Vahl
- Author
-
Ying Lin, Ruiming Xiao, Guangjuan Luo, Wanci Liao, Shuting Chen, Shuangyan Han, and Shuli Liang
- Abstract
Ficus hirta Vahl (FHV), a traditional herbal ingredient of the tonic diet, receives increasing popularity in southern China. However, it is largely unknown that how a FHV diet (FHVD) affects the human gut microbiome. A total of 43 healthy individuals were randomized into the FHVD (n=25) and Control (n=18) groups to receive diet intervention for 8 weeks. 16S rRNA sequencing, metagenomic sequencing and metabolic profile of participants were measured to assess the association between FHV diet and gut microbiome. A preservation effect of Faecalibacterium and enrichment of Dialister, Veillonella, Clostridium, and Lachnospiraceae were found during the FHVD. Accordingly, the pathway of amino acid synthesis, citrate cycle, coenzyme synthesis, and partial B vitamin synthesis were found to be more abundant in the FHVD. In addition, serine, glutamine, gamma-aminobutyric acid, tryptamine, and short-chain fatty acids (SCFAs) were higher after the FHVD. The conjoint analysis of FHV components and in-vitro fermentation confirmed that the improved SCFAs concentration was collectively contributed by the increasing abundance of key enzyme genes and available substrates. In conclusion, the muti-omics analysis showed that the FHVD optimized the structure of the gut microbial community and its metabolic profile, leading to a healthy tendency, with a small cluster of bacteria driving the variation rather than a single taxon.
- Published
- 2022
- Full Text
- View/download PDF
23. Adjustable shunt-current intensity circuit and system for current conduction treatment of epilepsy
- Author
-
Changhua You, Ning Xue, Lei Yao, Pan Yao, Tiezhu Liu, Zhen Fang, Li Li, Ping Ding, Shuli Liang, and Chunxiu Liu
- Subjects
Statistical and Nonlinear Physics ,Condensed Matter Physics - Abstract
In this paper, we developed a shunt-current intensity self-adjustable closed-loop control circuit system for current conduction treatment in temporal lobe epilepsy. To examine the dose-response relationship between conductive intensity and therapeutic outcomes of current conduction treatment, the control system consists of neural signal recording module for high-speed data rate acquisition, signal amplification and pre-processing, current shunt module for current conduction, data transmission and control module for real-time data communication with the personal computer and on-off of current conduction. Multithread and queue software architecture was implemented to ensure real-time data transmission, display and analysis by LabVIEW software. Results indicate that the input noise of the system is less than 2 [Formula: see text]Vrms, signal frequency bandwidth range is 1 Hz[Formula: see text]10 kHz, and the shunt-current detection range is 0.1–3000 [Formula: see text]A with the accuracy of above 99.985%, meeting the requirements for the detection of neural electrophysiological signal and the research on the dose-response relationship between conductive intensity and therapeutic outcomes of electronic conduction treatment.
- Published
- 2022
- Full Text
- View/download PDF
24. Improving the catalytic performance of Pichia pastoris whole-cell biocatalysts by fermentation process
- Author
-
Denggang Wang, Ying Lin, Xin Zeng, Shuli Liang, Wenjie Li, and Meiqi Chen
- Subjects
biology ,Chemistry ,General Chemical Engineering ,Sonication ,Substrate (chemistry) ,General Chemistry ,equipment and supplies ,biology.organism_classification ,Combinatorial chemistry ,Catalysis ,Pichia pastoris ,Reagent ,biology.protein ,Sucrose synthase ,Fermentation ,Rebaudioside A - Abstract
Whole-cell biocatalysts have a wide range of applications in many fields. However, the transport of substrates is tricky when applying whole-cell biocatalysts for industrial production. In this research, P. pastoris whole-cell biocatalysts were constructed for rebaudioside A synthesis. Sucrose synthase was expressed intracellularly while UDP-glycosyltransferase was displayed on the cell wall surface simultaneously. As an alternative method, a fermentation process is applied to relieve the substrate transport-limitation of P. pastoris whole-cell biocatalysts. This fermentation process was much simpler, more energy-saving, and greener than additional operating after collecting cells to improve the catalytic ability of whole-cell biocatalysts. Compared with the general fermentation process, the protein production capacity of cells did not decrease. Meanwhile, the activity of whole-cell biocatalysts was increased to 262%, which indicates that the permeability and space resistance were improved to relieve the transport-limitations. Furthermore, the induction time was reduced from 60 h to 36 h. The fermentation process offered significant advantages over traditional permeabilizing reagent treatment and ultrasonication treatment based on the high efficiency and simplicity.
- Published
- 2021
- Full Text
- View/download PDF
25. Clinical Application of 7T Magnetic Resonance Imaging in Patients with Focal Cortical Dysplasia IIa and Epilepsy
- Author
-
Huilou Liang, Rong Xue, Yangshuo Wang, Shaohui Zhang, Shuli Liang, Liu Yuan, Kaibao Sun, Tinghong Liu, and Jianfei Cui
- Subjects
medicine.medical_specialty ,Epilepsy ,medicine.diagnostic_test ,business.industry ,Magnetic resonance imaging ,Cortical dysplasia ,medicine.disease ,Magnetic Resonance Imaging ,White Matter ,Malformations of Cortical Development ,Lesion ,Neuroimaging ,Humans ,Medicine ,Surgery ,Epilepsy surgery ,Epilepsies, Partial ,Neurology (clinical) ,Radiology ,Medical diagnosis ,medicine.symptom ,business ,Pathological - Abstract
Background: Focal cortical dysplasia (FCD) is one of the most important pathogenic findings in patients with extratemporal lobe epilepsy. Magnetic resonance imaging (MRI)-negative is the most important negative factor to predict postoperative seizure freedom; however, FCD-I and part of FCD-IIa are MRI-negative on routine MRI. Objectives: To explore the diagnostic values of 7T MRI and its new scan sequences in epilepsy patients with FCD-IIa. Methods: To include patients with focal seizure and suspicious focal abnormal imaging on 3T MRI during preoperative evaluation and perform a 7T MRI scan with white matter-suppressed (WMS) and gray-white matter tissue border enhancement (GWBE) sequences, resective epilepsy surgery, and postoperative pathological finding of FCD-IIa. The preoperative qualitative and localization significance of 7T MRI and 3T MRI in lesions with FCD-IIa was compared, and then, the imaging characteristics of lesions with FCD-IIa on 7T MRI were analyzed. Results: Ten cases were enrolled in this study. Seven tesla MRI presented high spatial resolutions and a high signal-to-noise ratio. WMS and GWBE could selectively suppress the signal of special tissue and improved the possibility of FCD findings. FCD-IIa showed abnormal thickness of gray matter and a blurring border and was hypointense on 7T MRI compared with 3T MRI. Seven patients showed improvement in the qualitative diagnosis strength grade of FCD, and 6 subjects showed improvement in the localization strength grade of the lesion border after careful reading of the 7T MR images. Significant differences were found in the qualitative diagnosis of FCD (p < 0.05) and localization of the lesion border (p < 0.05) between the neuroimaging diagnoses based on 3T MRI and the findings based on 7T MRI. Conclusion: 7T MRI with WMS and GWBE sequences shows application value in the preoperative imaging diagnosis of lesions with FCD-IIa in epilepsy patients.
- Published
- 2020
- Full Text
- View/download PDF
26. Metagenomic characterization of bacterial community and antibiotic resistance genes in representative ready-to-eat food in southern China
- Author
-
Chen Xun, Yiming Li, Cao Weiwei, Lei Shi, Shinji Yamasaki, Lei Ye, and ShuLi Liang
- Subjects
0301 basic medicine ,China ,Meat ,Firmicutes ,030106 microbiology ,lcsh:Medicine ,Article ,03 medical and health sciences ,Antibiotic resistance ,Drug Resistance, Multiple, Bacterial ,RNA, Ribosomal, 16S ,Vegetables ,Food microbiology ,lcsh:Science ,Phylogeny ,Genetics ,Multidisciplinary ,Bacteria ,biology ,lcsh:R ,Bacteroidetes ,Drug Resistance, Microbial ,biology.organism_classification ,Resistome ,030104 developmental biology ,Fruit ,Food Microbiology ,Fast Foods ,Metagenome ,Microbial genetics ,lcsh:Q ,Metagenomics ,Microbiome ,Mobile genetic elements ,Proteobacteria - Abstract
Ready-to-eat (RTE) foods have been considered to be reservoirs of antibiotic resistance bacteria, which constitute direct threat to human health, but the potential microbiological risks of RTE foods remain largely unexplored. In this study, the metagenomic approach was employed to characterize the comprehensive profiles of bacterial community and antibiotic resistance gene (ARG) in 18 RTE food samples (8 RTE meat, 7 RTE vegetables and 3 RTE fruit) in southern China. In total, the most abundant phyla in RTE foods were Proteobacteria, Firmicutes, Cyanobacteria, Bacteroidetes and Actinobacteria. 204 ARG subtypes belonging to 18 ARG types were detected with an abundance range between 2.81 × 10−5 and 7.7 × 10−1 copy of ARG per copy of 16S rRNA gene. Multidrug-resistant genes were the most predominant ARG type in the RTE foods. Chloramphenicol, macrolide-lincosamide-streptogramin, multidrug resistance, aminoglycoside, bacitracin, tetracycline and β-lactam resistance genes were dominant, which were also associated with antibiotics used extensively in human medicine or veterinary medicine/promoters. Variation partitioning analysis indicated that the join effect of bacterial community and mobile genetic elements (MGEs) played an important role in the resistome alteration. This study further deepens the comprehensive understanding of antibiotic resistome and the correlations among the antibiotic resistome, microbiota, and MGEs in the RTE foods.
- Published
- 2020
- Full Text
- View/download PDF
27. Engineering the regulatory site of the catalase promoter for improved heterologous protein production in Pichia pastoris
- Author
-
Ying Lin, Yehong Duan, Yiming Zhang, Shuli Liang, Shulin Hu, and Luyuan Nong
- Subjects
0106 biological sciences ,0301 basic medicine ,Heterologous ,Bioengineering ,Regulatory site ,01 natural sciences ,Applied Microbiology and Biotechnology ,Pichia pastoris ,Green fluorescent protein ,Metabolic engineering ,03 medical and health sciences ,Gene Expression Regulation, Fungal ,010608 biotechnology ,Protein biosynthesis ,Transcriptional regulation ,Binding site ,Promoter Regions, Genetic ,Binding Sites ,biology ,Chemistry ,General Medicine ,Catalase ,biology.organism_classification ,030104 developmental biology ,Metabolic Engineering ,Biochemistry ,Saccharomycetales ,Synthetic Biology ,Genetic Engineering ,Protein Binding ,Transcription Factors ,Biotechnology - Abstract
To build a stronger Pichia pastoris PCAT1 promoter and to identify putative transcriptional factor binding sites (TFBSs) on PCAT1 that affect the activity of the promoter. A synthetic library of PCAT1 was generated by deleting or duplicating putative TFBS motifs in the promoter sequence. CSRE, MIG1, RAP1 and HAP2/3/4 were found to have important effects on PCAT1 activity. The PCAT1 variant P4 with a putative binding site of RAP1 on the promoter sequence showed a stronger activity compared with that of the wild-type PCAT1 and PAOX1, which is the strongest natural P. pastoris promoter that has been reported. This inference was confirmed with EGFP (enhanced green fluorescent protein) and Candida Antarctica lipase B as the reporters. The role of the transcriptional regulator RAP1 may be important in PCAT1 methanol induction. A stronger PCAT1 variant can be constructed by the duplication of the putative binding site of RAP1 on the PCAT1 promoter sequence. This PCAT1 variant has potential value for heterologous protein production, metabolic engineering, and synthetic biology.
- Published
- 2020
- Full Text
- View/download PDF
28. Overexpression of the regulatory subunit of protein kinase A increases heterologous protein expression in Pichia pastoris
- Author
-
Dafu Huang, Liang Chen, Lin Wenyang, Lu Li, Xihao Liao, Ying Lin, Shuli Liang, Bingxu Zhong, and Nanzhu Chen
- Subjects
0106 biological sciences ,0301 basic medicine ,Protein subunit ,Heterologous ,Bioengineering ,01 natural sciences ,Applied Microbiology and Biotechnology ,Gene Expression Regulation, Enzymologic ,Green fluorescent protein ,Pichia pastoris ,03 medical and health sciences ,010608 biotechnology ,Translational regulation ,Protein biosynthesis ,Protein kinase A ,Gene ,6-Phytase ,biology ,Chemistry ,Gene Expression Profiling ,Methanol ,General Medicine ,biology.organism_classification ,Cyclic AMP-Dependent Protein Kinases ,Recombinant Proteins ,Cell biology ,Protein Subunits ,030104 developmental biology ,Protein Biosynthesis ,Saccharomycetales ,Biotechnology - Abstract
Translational regulation plays an important role in protein synthesis. Our goal was to screen translation-related factors to improve heterologous protein expression in Pichia pastoris. Twenty-eight translation-related factors were overexpressed in P. pastoris GS115 expressing enhanced green fluorescent protein (eGFP). The results showed that overexpression of Bcy1, the regulatory subunit of protein kinase A (PKA), significantly increased both eGFP expression and cell biomass by 20% under methanol induction for 120 h. Additionally, overexpression of Bcy1 elevated the growth rate by 18% and increased production of the industrial enzyme Phytase (Phy) by 26%. Transcriptome analysis indicated that the overall expression of ribosomal protein genes was significantly downregulated and that postdiauxic shift genes and stress response element genes were upregulated. Bcy1 regulates ribosome protein genes, postdiauxic shift genes and stress response element genes, leading to improved cell growth and heterologous protein expression. This study provides a convenient and universal factor for heterologous protein production.
- Published
- 2020
- Full Text
- View/download PDF
29. Multiple cellular responses guarantee yeast survival in presence of the cell membrane/wall interfering agent sodium dodecyl sulfate
- Author
-
Ying Lin, Shuli Liang, Zhansheng Li, Shuangyan Han, Fengguang Zhao, Suiping Zheng, Jiaming Yang, and Jingwen Li
- Subjects
0301 basic medicine ,Saccharomyces cerevisiae ,Biophysics ,Ribosome biogenesis ,Biochemistry ,Cell membrane ,Surface-Active Agents ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Cell Wall ,medicine ,Sodium dodecyl sulfate ,Protein kinase A ,Molecular Biology ,biology ,Chemistry ,Cell Membrane ,Computational Biology ,Sodium Dodecyl Sulfate ,Translation (biology) ,Cell Biology ,biology.organism_classification ,Cell biology ,Metabolic pathway ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Signal transduction - Abstract
Sodium dodecyl sulfate (SDS), a representative anionic surfactant, is a commonly used reagent in studies of the cell membrane and cell wall. However, the mechanisms through which SDS affects cellular functions have not yet been fully examined. Thus, to gain further insights into the cellular functions and responses to SDS, we tested a haploid library of Saccharomyces cerevisiae single-gene deletion mutants to identify genes required for tolerance to SDS. After two rounds of screening, we found 730 sensitive and 77 resistant mutants. Among the sensitive mutants, mitochondrial gene expression; the mitogen-activated protein kinase signaling pathway; the metabolic pathways involved in glycoprotein, lipid, purine metabolic process, oxidative phosphorylation, cellular amino acid biosynthesis and pentose phosphate pathway were found to be enriched. Additionally, we identified a set of transcription factors related to SDS responses. Among the resistant mutants, disruption of ribosome biogenesis and translation alleviated SDS-induced cytotoxicity. Collectively, our results provided new insights into the mechanisms through which SDS regulates the cell membrane or cell wall.
- Published
- 2020
- Full Text
- View/download PDF
30. Enhancing the substrate tolerance of DszC by a combination of alanine scanning and site-directed saturation mutagenesis
- Author
-
Lu Li, Xihao Liao, Wei Zhang, Ying Lin, Shuli Liang, and Lei Ye
- Subjects
Models, Molecular ,chemistry.chemical_classification ,Alanine ,Strain (chemistry) ,Chemistry ,Mutant ,Substrate (chemistry) ,Bioengineering ,Thiophenes ,Protein engineering ,Alanine scanning ,Applied Microbiology and Biotechnology ,Protein Structure, Tertiary ,Enzyme ,Bacterial Proteins ,Biochemistry ,Mutagenesis ,Heterocyclic compound ,Saturated mutagenesis ,Biotechnology - Abstract
The biodesulfurization 4S pathway can specifically desulfurize an aromatic S heterocyclic compound (which is difficult to desulfurize by hydrodesulfurization) and maintain the integrity of its combustion value. The four Dsz enzymes in the pathway convert the model compound dibenzothiophene (DBT) into the sulfur-free compound 2-hydroxybiphenyl (HBP). DszC is the first enzyme in the 4S pathway and is subject to feedback inhibition and substrate inhibition. This study is the first attempt to further modify the DszC mutant AKWC to improve its tolerance to DBT. Alanine scanning was performed on the dimeric surface of the DszC mutant AKWC, and the HBP yield of the BAD (AKWCP413A) strain was increased compared to the BAD (AKWC) strain. Site-directed saturation mutagenesis was performed on the 413th amino acid of AKWC, and the substrate inhibition parameter KI value of the mutant AKWCPI was 5.6 times higher than that of AKWC. When the DBT concentration was 0.25 mM, the HBP production of the recombinant strain overexpressing AKWCPI was increased by approximately 1.4-fold compared to the BL21(DE3)/BADC*+C* strain. The protein engineering of DszC further improved the substrate tolerance after overcoming the feedback inhibition, which provided a reference for the analysis of the inhibition mechanism of DszC substrate. Overexpression of DszC-beneficial mutants also greatly improved the efficiency of desulfurization.
- Published
- 2020
- Full Text
- View/download PDF
31. Production of lycopene by metabolically engineered Pichia pastoris
- Author
-
Ying Lin, Xueyun Zheng, Yehong Duan, Xinying Zhang, Denggang Wang, and Shuli Liang
- Subjects
0106 biological sciences ,0301 basic medicine ,Heterologous ,01 natural sciences ,Applied Microbiology and Biotechnology ,Biochemistry ,Analytical Chemistry ,Pichia pastoris ,Corynebacterium glutamicum ,Metabolic engineering ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,010608 biotechnology ,Molecular Biology ,Carotenoid ,chemistry.chemical_classification ,biology ,Organic Chemistry ,General Medicine ,biology.organism_classification ,Lycopene ,030104 developmental biology ,chemistry ,Biotechnology - Abstract
Lycopene is a highly valued carotenoid with wide applications in various industries. The market demand for lycopene promotes research in metabolic engineering of heterologous hosts for lycopene. In this study, Pichia pastoris strain GS115 was genetically engineered to produce lycopene by integrating the heterologous lycopene biosynthesis genes from Corynebacterium glutamicum ATCC13032. The resulting strain, L1, produced 0.115 mg/g cell dry weight (DCW) lycopene. Through optimization by promoter selection, improving the precursor supply and expanding the Geranylgeranyl diphosphate (GGPP) pool, ultimately, the lycopene yield of the final optimal strain was 6.146 mg/g DCW with shake flask fermentation and 9.319 mg/g DCW (0.714 g/L) in a 3 L fermenter. The lycopene yield in this study is the highest yield of lycopene in P. pastoris reported to date, which demonstrated the potential of P. pastoris in lycopene synthesis and as a candidate host organism for the synthesis of other high value-added terpenoids. P. pastoris strain GS115 was genetically engineered to produce lycopene and the lycopene yield was improved step by step.
- Published
- 2020
- Full Text
- View/download PDF
32. Improving Thermostability and Catalytic Activity of Glycosyltransferase From Panax ginseng by Semi-Rational Design for Rebaudioside D Synthesis
- Author
-
Meiqi Chen, Fangwei Song, Yuxi Qin, Shuangyan Han, Yijian Rao, Shuli Liang, and Ying Lin
- Subjects
Histology ,Biomedical Engineering ,Bioengineering ,Biotechnology - Abstract
As a natural sweetener and sucrose substitute, the biosynthesis and application of steviol glycosides containing the component rebaudioside D have attracted worldwide attention. Here, a glycosyltransferase PgUGT from Panax ginseng was first reported for the biosynthesis of rebaudioside D. With the three-dimensional structures built by homology modeling and deep-learning–based modeling, PgUGT was semi-rationally designed by FireProt. After detecting 16 site-directed variants, eight of them were combined in a mutant Mut8 with both improved enzyme activity and thermostability. The enzyme activity of Mut8 was 3.2-fold higher than that of the wild type, with an increased optimum reaction temperature from 35 to 40°C. The activity of this mutant remained over 93% when incubated at 35°C for 2 h, which was 2.42 times higher than that of the wild type. Meanwhile, when the enzymes were incubated at 40°C, where the wild type was completely inactivated after 1 h, the residual activity of Mut8 retained 59.0% after 2 h. This study would provide a novel glycosyltransferase with great potential for the industrial production of rebaudioside D and other steviol glycosides.
- Published
- 2022
- Full Text
- View/download PDF
33. Chinese guideline on the application of anti-seizure medications in the perioperative period of supratentorial craniocerebral surgery
- Author
-
Shuli Liang, Xing Fan, Feng Chen, Yonghong Liu, Binghui Qiu, Kai Zhang, Songtao Qi, Guojun Zhang, Jinfang Liu, Jianguo Zhang, Jun Wang, Xiu Wang, Ziyang Song, Guoming Luan, Xuejun Yang, Rongcai Jiang, Hua Zhang, Lei Wang, Yongping You, Kai Shu, Xiaojie Lu, Guoyi Gao, Bo Zhang, Jian Zhou, Hai Jin, Kaiwei Han, Yiming Li, Junji Wei, Kun Yang, Gan You, Hongming Ji, Yuwu Jiang, Yi Wang, Zhiguo Lin, Yan Li, Xuewu Liu, Jie Hu, Junming Zhu, Wenling Li, Yongxin Wang, Dezhi Kang, Hua Feng, Tinghong Liu, Xin Chen, Yawen Pan, Zhixiong Liu, Gang Li, Yunqian Li, Ming Ge, Xianming Fu, Yuping Wang, Dong Zhou, Shichuo Li, Tao Jiang, Lijun Hou, and Zhen Hong
- Subjects
Pharmacology ,Neurology ,Neurology (clinical) - Abstract
Seizures are a common symptom of craniocerebral diseases, and epilepsy is one of the comorbidities of craniocerebral diseases. However, how to rationally use anti-seizure medications (ASMs) in the perioperative period of craniocerebral surgery to control or avoid seizures and reduce their associated harm is a problem. The China Association Against Epilepsy (CAAE) united with the Trauma Group of the Chinese Neurosurgery Society, Glioma Professional Committee of the Chinese Anti-Cancer Association, Neuro-Oncology Branch of the Chinese Neuroscience Society, and Neurotraumatic Group of Chinese Trauma Society, and selected experts for consultancy regarding outcomes from evidence-based medicine in domestic and foreign literature. These experts referred to the existing research evidence, drug characteristics, Chinese FDA-approved indications, and expert experience, and finished the current guideline on the application of ASMs during the perioperative period of craniocerebral surgery, aiming to guide relevant clinical practice. This guideline consists of six sections: application scope of guideline, concepts of craniocerebral surgery-related seizures and epilepsy, postoperative application of ASMs in patients without seizures before surgery, application of ASMs in patients with seizures associated with lesions before surgery, emergency treatment of postoperative seizures, and 16 recommendations.
- Published
- 2022
34. An iEEG Recording and Adjustable Shunt-Current Conduction Platform for Epilepsy Treatment
- Author
-
Changhua You, Lei Yao, Pan Yao, Li Li, Ping Ding, Shuli Liang, Chunxiu Liu, and Ning Xue
- Subjects
Epilepsy ,Clinical Biochemistry ,Electric Impedance ,Animals ,Brain ,Electroencephalography ,General Medicine ,neural electrophysiological signal recording ,current conduction treatment ,conduction electrode ,temporal lobe epilepsy ,Electrodes, Implanted ,Rats - Abstract
This paper proposes a compact bioelectronics sensing platform, including a multi-channel electrode, intracranial electroencephalogram (iEEG) recorder, adjustable galvanometer, and shunt-current conduction circuit pathway. The developed implantable electrode made of polyurethane-insulated stainless-steel materials is capable of recording iEEG signals and shunt-current conduction. The electrochemical impedance of the conduction, ground/reference, and working electrode were characterized in phosphate buffer saline solution, revealing in vitro results of 517.2 Ω@1 kHz (length of 0.1 mm, diameter of 0.8 mm), 1.374 kΩ@1 kHz (length of 0.3 mm, diameter of 0.1 mm), and 3.188 kΩ@1 kHz (length of 0.1 mm, diameter of 0.1 mm), respectively. On-bench measurement of the system revealed that the input noise of the system is less than 2 μVrms, the signal frequency bandwidth range is 1 Hz~10 kHz, and the shunt-current detection range is 0.1~3000 μA with an accuracy of above 99.985%. The electrode was implanted in the CA1 region of the right hippocampus of rats for the in vivo experiments. Kainic acid (KA)-induced seizures were detected through iEEG monitoring, and the induced shunt-current was successfully measured and conducted out of the brain through the designed circuit-body path, which verifies the potential of current conduction for the treatment of epilepsy.
- Published
- 2022
- Full Text
- View/download PDF
35. Acute and Chronic Toxicity of Binary Mixtures of Bisphenol A and Heavy Metals
- Author
-
Jun Yang, Anqi Liao, Shulin Hu, Yiwen Zheng, Shuli Liang, Shuangyan Han, and Ying Lin
- Subjects
endocrine system ,Chemical Health and Safety ,urogenital system ,mixture toxicity ,bisphenol A ,heavy metal ,joint effect ,Vibrio qinghaiensis Q67 ,Health, Toxicology and Mutagenesis ,Toxicology ,hormones, hormone substitutes, and hormone antagonists - Abstract
Bisphenol A (BPA) and heavy metals are widespread contaminants in the environment. However, the combined toxicities of these contaminants are still unknown. In this study, the bioluminescent bacteria Vibrio qinghaiensis Q67 was used to detect the single and combined toxicities of BPA and heavy metals, then the joint effects of these contaminants were evaluated. The results show that chronic toxicities of chromium (Cr), cadmium (Cd), lead (Pb), arsenic (As), mercury (Hg), nickel (Ni), and BPA were time–dependent; in fact, the acute toxicities of these contaminants were stronger than the chronic toxicities. Furthermore, the combined toxicities of BPA and heavy metals displayed BPA + Hg > BPA + Cr > BPA + As > BPA + Ni > BPA + Pb > BPA + Cd in the acute test and BPA + Hg > BPA + Cd > BPA + As > BPA + Cd in the chronic test, which suggested that the combined toxicity of BPA and Hg was stronger than that of other mixtures in acute as well as chronic tests. Additionally, both CA and IA models underestimated the toxicities of mixtures at low concentrations but overestimated them at high concentrations, which indicates that CA and IA models were not suitable to predict the toxicities of mixtures of BPA and heavy metals. Moreover, the joint effects of BPA and heavy metals mainly showed antagonism and additive in the context of acute exposure but synergism and additive in the context of chronic exposure. Indeed, the difference in the joint effects on acute and chronic exposure can be explained by the possibility that mixtures inhibited cell growth and luminescence in chronic cultivation. The chronic toxicity of the mixture should be considered if the mixture results in the inhibition of the growth of cells.
- Published
- 2022
36. Preliminary study on pathogenic mechanism of first Chinese family with PNKD
- Author
-
Feng Chen, Shaohui Zhang, Tinghong Liu, Liu Yuan, Yangshuo Wang, Guojun Zhang, and Shuli Liang
- Subjects
General Neuroscience - Abstract
Background The first Chinese family with paroxysmal non-kinesigenic dystonia (PNKD) was confirmed to harbour a PNKD mutation. However, the pathogenic mechanism of the PNKD-causing gene mutation was unclear. Methods Wild-type and mutant PNKD-L plasmids were prepared and transfected into the C6 cell line to study the distribution and stability of PNKD protein in C6 cells and its effect on the glutathione content. The blood and cerebrospinal fluid (CSF) of 3 PNKD patients and 3 healthy controls were collected. The differentially expressed proteins were identified using isobaric tags for relative and absolute quantitation. Furthermore, Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) enrichment analyses were performed, and the protein–protein interaction network was constructed. Results Wild-type PNKD protein was mainly distributed in the membranes, whereas mutant PNKD protein was distributed throughout the C6 cells. After transfection with mutant PNKD-L plasmid, the glutathione content decreased significantly in C6 cells; the stability of the mutant PNKD protein was significantly low. There were 172 and 163 differentially expressed proteins in CSF and plasma, respectively, of PNKD patients and healthy controls. For these proteins, blood microparticle and complex activation (classical pathway) were the common GO enrichment term, and complex and coordination cascade pathway were the common KEGG enrichment pathway. Recombinant mothers against decapentaplegic homolog 4 (SMAD4) was one of the differentially expressed proteins; it exhibited a relationship with the aforementioned enrichment GO terms and KEGG pathway. Conclusion PNKD protein was mainly distributed in cell membranes. PNKD-L mutation affected subcellular localisation, PNKD protein stability, and glutathione content. SMAD4 was found to be a potential biomarker for PNKD diagnosis.
- Published
- 2022
37. Ciclopirox inhibits NLRP3 inflammasome activation via protecting mitochondria and ameliorates imiquimod-induced psoriatic inflammation in mice
- Author
-
Shuli Liang, Zhongjin Yang, Lei Hua, Yanhong Chen, Yinghua Zhou, Yitao Ou, Xiuhui Chen, Hu Yue, Xiangyu Yang, Xinyi Wu, Wenhui Hu, and Ping Sun
- Subjects
Pharmacology ,Inflammation ,Lipopolysaccharides ,Imiquimod ,Inflammasomes ,Interleukin-1beta ,Ciclopirox ,Mitochondria ,Mice, Inbred C57BL ,Mice ,NLR Family, Pyrin Domain-Containing 3 Protein ,Animals ,Psoriasis ,Reactive Oxygen Species - Abstract
The maturation and secretion of interleukin-1β (IL-1β) mediated by NLRP3 inflammasome activation plays an important role in the progression of many inflammatory diseases. Inhibition of NLRP3 inflammasome activation may be a promising strategy to treat these inflammation-driven diseases, such as psoriasis. As a broad-spectrum antifungal agent, ciclopirox (CPX) is widely used in the treatment of dermatomycosis. Although CPX has been reported to have anti-inflammatory effects in many studies, there has been little research into its underlying mechanisms. In our study, CPX reduced lipopolysaccharide (LPS)/nigericin-induced NLRP3 inflammasome activation (IC
- Published
- 2022
38. Improving Thermostability and Catalytic Activity of Glycosyltransferase From
- Author
-
Meiqi, Chen, Fangwei, Song, Yuxi, Qin, Shuangyan, Han, Yijian, Rao, Shuli, Liang, and Ying, Lin
- Abstract
As a natural sweetener and sucrose substitute, the biosynthesis and application of steviol glycosides containing the component rebaudioside D have attracted worldwide attention. Here, a glycosyltransferase PgUGT from
- Published
- 2022
39. Interictal Discharge Pattern in Preschool-Aged Children With Tuberous Sclerosis Complex Before and After Resective Epilepsy Surgery
- Author
-
Liu Yuan, Yangshuo Wang, Shuhua Cheng, Junchen Zhang, Shaohui Zhang, Tinghong Liu, Guojun Zhang, and Shuli Liang
- Subjects
Neurology ,Neurology (clinical) - Abstract
ObjectiveTo analyze the interictal discharge (IID) patterns on pre-operative scalp electroencephalogram (EEG) and compare the changes in IID patterns after removal of epileptogenic tubers in preschool children with tuberous sclerosis complex (TSC)-related epilepsy.MethodsThirty-five preschool children who underwent resective surgery for TSC-related epilepsy were enrolled retrospectively, and their EEG data collected before surgery to 3 years after surgery were analyzed.ResultsTwenty-three (65.7%) patients were seizure-free post-operatively at 1-year follow-up, and 37–40% of post-operative patients rendered non-IID on scalp EEGs, and patients with focal IIDs or generalized IID patterns on pre-operative EEG presented a high percentage of normal post-operative scalp EEGs. IID patterns on pre-operative scalp EEGs did not influence the outcomes of post-operative seizure controls, while patients with non-IID and focal IID on post-operative EEGs were likely to achieve post-operative seizure freedom. Patients with new focal IIDs presented a significantly lower percentage of seizure freedom than those without new focal IIDs on post-operative EEGs at 3-year follow-up.ConclusionOver 1/3 children with TSC presented normal scalp EEGs after resective epileptsy surgery. Patients with post-operative seizure freedom were more likely to have non-IIDs on post-operative EEGs. New focal IIDs were negative factors for seizure freedom at the 3-year follow-up.
- Published
- 2022
40. Fluorescent indicators for live-cell and in vitro detection of inorganic cadmium dynamics
- Author
-
Shulin Hu, Jun Yang, Anqi Liao, Ying Lin, and Shuli Liang
- Subjects
inorganic chemicals ,Ions ,Clinical Psychology ,Sociology and Political Science ,Clinical Biochemistry ,Escherichia coli ,Proteins ,Law ,Biochemistry ,Spectroscopy ,Social Sciences (miscellaneous) ,Cadmium ,Fluorescent Dyes - Abstract
Cadmium contamination is a severe threat to the environment and food safety. Thus, there is an urgent need to develop highly sensitive and selective cadmium detection tools. The engineered fluorescent indicator is a powerful tool for the rapid detection of inorganic cadmium in the environment. In this study, the development of yellow fluorescent indicators of cadmium chloride by inserting a fluorescent protein at different positions of the high cadmium-specific repressor and optimizing the flexible linker between the connection points is reported. These indicators provide a fast, sensitive, specific, high dynamic range, and real-time readout of cadmium ion dynamics in solution. Under optimal conditions, the fluorescent indicators N0C0/N1C1 showed a linear response to cadmium concentration within the range from 10/30 to 50/100 nM and with a detection limit of 10/33 nM. Escherichia coli cells containing the indicator were used to further study the response of cadmium ion concentration in living cells. E. coli N1C1 could respond to different concentrations of cadmium ions. This study provides a rapid and straightforward method for cadmium ion detection in vitro and the potential for biological imaging.
- Published
- 2021
41. Green Process: Improved Semi-Continuous Fermentation of Pichia pastoris Based on the Principle of Vitality Cell Separation
- Author
-
Denggang Wang, Wenjie Li, Xinying Zhang, Shuli Liang, and Ying Lin
- Subjects
pichia pastoris ,Histology ,Biomedical Engineering ,Bioengineering and Biotechnology ,semi-continuous cultivation ,Bioengineering ,vitality cells ,sedimentation ,TP248.13-248.65 ,metal ion ,Biotechnology ,Original Research - Abstract
The large-scale fermentation of Pichia pastoris for recombinant protein production would be time consuming and produce a large amount of waste yeast. Here we introduce a novel semi-continuous fermentation process for P. pastoris GS115 that can separate vitality cells from broth and recycle the cells to produce high-secretory recombinant pectate lyase. It is based on differences in cell sedimentation coefficients with the formation of salt bridges between metal ions and various cell states. Compared to batch-fed cultivation and general semi-continuous culture, the novel process has significant advantages, such as consuming fewer resources, taking less time, and producing less waste yeast. Sedimentation with the addition of Fe3+ metal ions consumed 14.8 ± 0.0% glycerol, 97.8 ± 1.3% methanol, 55.0 ± 0.9 inorganic salts, 81.5 ± 0.0% time cost, and 77.0 ± 0.1% waste yeast versus batch-fed cultivation to produce an equal amount of protein; in addition, the cost of solid–liquid separation was lower for cells in the collected fermentation broth. The process is economically and environmentally efficient for producing recombinant proteins.
- Published
- 2021
42. Research on the innovation of teaching mode of vocational and technical education
- Author
-
Shuli Liang, Ou Qi, Fengchen Zhao, and Junpeng Ma
- Subjects
Vocational education ,Mathematics education ,Mode (statistics) ,Teaching mode ,Sociology ,General Medicine ,Object (philosophy) - Abstract
Vocational and technical education group is the main training object of new high-quality talents in our school, and teaching is the basic link of Vocational and technical education. The current teaching mode of Vocational and technical education has the disadvantages of emphasizing theory and neglecting practice. Therefore, it is necessary to discuss the teaching mode of Vocational and technical education in our school. Based on the current situation of the teaching mode of Vocational and technical education in our school, this paper puts forward the teaching and assessment mode of “combining theory with practice” and “combining thinking cultivation with practice”.
- Published
- 2023
- Full Text
- View/download PDF
43. Bortezomib inhibits NLRP3 inflammasome activation and NF-κB pathway to reduce psoriatic inflammation
- Author
-
Xiuhui, Chen, Yanhong, Chen, Yitao, Ou, Wenjie, Min, Shuli, Liang, Lei, Hua, Yinghua, Zhou, Cheng, Zhang, Peifeng, Chen, Zhongjin, Yang, Wenhui, Hu, and Ping, Sun
- Subjects
Bortezomib ,Inflammation ,Pharmacology ,Mice ,Inflammasomes ,NLR Family, Pyrin Domain-Containing 3 Protein ,Interleukin-1beta ,Caspase 1 ,NF-kappa B ,Animals ,Psoriasis ,Carrier Proteins ,Biochemistry - Abstract
The abnormal activation of nucleotide-binding oligomerization domain-like receptor family pyrin domain-containing protein 3 (NLRP3) inflammasome plays an important role in the pathogenesis of psoriasis. Accordingly, the inhibition of NLRP3 inflammasome may be an effective strategy for psoriasis treatment. However, the NLRP3 inflammasome inhibitors are not available in the clinic. Repurposing FDA-approved drugs is a highly attractive way for identifying new drugs. Here, proteasome inhibitor bortezomib, a marketed drug for treating multiple myeloma, was found to specifically inhibit NLRP3 inflammasome activation at nanomolar concentrations. Mechanistically, bortezomib did not inhibit reactive oxygen species generation, ion efflux, NLRP3 oligomerization, and NLRP3-ASC interactions. Bortezomib reduced ASC oligomerization and ASC speck formation. In addition, bortezomib inhibited the activity of the core subunit β5i in the immunoproteasome and reduced β5i binding to NLRP3. Bortezomib reduced the production of interleukin-1β and attenuated the severity of skin lesions in the imiquimod-induced psoriatic mouse model. Thus, bortezomib is a potential therapeutic drug for psoriasis. Our study also revealed that β5i may be an indirect target for regulating NLRP3 inflammasome activation and treating psoriasis and other NLRP3 inflammasome-related diseases.
- Published
- 2022
- Full Text
- View/download PDF
44. A Novel and Efficient Genome Editing Tool Assisted by CRISPR-Cas12a/Cpf1 for
- Author
-
Xinying, Zhang, Songjie, Gu, Xueyun, Zheng, Siqi, Peng, Yanru, Li, Ying, Lin, and Shuli, Liang
- Subjects
Gene Editing ,Metabolic Engineering ,Synthetic Biology ,DNA ,CRISPR-Cas Systems ,Genome, Bacterial ,Pichia ,RNA, Guide, Kinetoplastida - Published
- 2021
45. Improving the catalytic performance of
- Author
-
Denggang, Wang, Meiqi, Chen, Xin, Zeng, Wenjie, Li, Shuli, Liang, and Ying, Lin
- Abstract
Whole-cell biocatalysts have a wide range of applications in many fields. However, the transport of substrates is tricky when applying whole-cell biocatalysts for industrial production. In this research
- Published
- 2021
46. Fhl1p protein, a positive transcription factor in Pichia pastoris, enhances the expression of recombinant proteins
- Author
-
Cheng Li, Xueyun Zheng, Xiaoxiao Liu, Yimin Zhang, Ying Lin, Shuli Liang, and Xinying Zhang
- Subjects
0106 biological sciences ,Translation ,Protein subunit ,lcsh:QR1-502 ,Heterologous ,Bioengineering ,01 natural sciences ,Applied Microbiology and Biotechnology ,Ribosome ,Pichia ,lcsh:Microbiology ,Pichia pastoris ,Fungal Proteins ,03 medical and health sciences ,010608 biotechnology ,RRNA processing ,Transcription factor ,Gene ,030304 developmental biology ,0303 health sciences ,biology ,Chemistry ,Activator (genetics) ,Research ,Enhanced protein production ,biology.organism_classification ,Recombinant Proteins ,Cell biology ,Fhl1p ,Biotechnology - Abstract
Background The methylotrophic yeast Pichia pastoris is well-known for the production of a broad spectrum of functional types of heterologous proteins including enzymes, antigens, engineered antibody fragments, and next gen protein scaffolds and many transcription factors are utilized to address the burden caused by the high expression of heterologous proteins. In this article, a novel P. pastoris transcription factor currently annotated as Fhl1p, an activator of ribosome biosynthesis processing, was investigated for promoting the expression of the recombinant proteins. Results The function of Fhl1p of P. pastoris for improving the expression of recombinant proteins was verified in strains expressing phytase, pectinase and mRFP, showing that the productivity was increased by 20–35%. RNA-Seq was used to study the Fhl1p regulation mechanism in detail, confirming Fhl1p involved in the regulation of rRNA processing genes, ribosomal small/large subunit biogenesis genes, Golgi vesicle transport genes, etc., which contributed to boosting the expression of foreign proteins. The overexpressed Fhl1p strain exhibited increases in the polysome and monosome levels, showing improved translation activities. Conclusion This study illustrated that the transcription factor Fhl1p could effectively enhance recombinant protein expression in P. pastoris. Furthermore, we provided the evidence that overexpressed Fhl1p was related to more active translation state.
- Published
- 2019
47. Deletion of Gcw13 represses autophagy in Pichia pastoris cells grown in methanol medium with sufficient amino acids
- Author
-
Shuli Liang, Pan Wang, Ying Lin, and Chengjuan Zou
- Subjects
0106 biological sciences ,0301 basic medicine ,Amino Acid Transport Systems ,Bioengineering ,Mechanistic Target of Rapamycin Complex 1 ,Endocytosis ,01 natural sciences ,Applied Microbiology and Biotechnology ,Pichia ,Pichia pastoris ,Fungal Proteins ,03 medical and health sciences ,010608 biotechnology ,Autophagy ,Asparagine ,Amino Acids ,Amino acid synthesis ,Sequence Deletion ,chemistry.chemical_classification ,biology ,Gene Expression Profiling ,Methanol ,General Medicine ,biology.organism_classification ,Culture Media ,Amino acid ,Glutamine ,Amino acid permease ,030104 developmental biology ,chemistry ,Biochemistry ,Biotechnology - Abstract
The purpose of this article is to study the underlying cause of the induction of autophagy in Pichia pastoris cells grown in amino acid-rich methanol medium during methanol adaptation. Autophagy was induced in P. pastoris GS115 when cells were grown in amino acid-rich methanol medium. Transcriptome analysis revealed that genes involved in amino acid biosynthesis were upregulated. The deletion of Gcw13, a GPI-anchored protein that plays a role in the endocytosis of the general amino acid permease Gap1, resulted in the inhibition of autophagy, the activation of TORC1 and an increase in the uptake of glutamine and asparagine in methanol-grown cells. Our results demonstrated that the autophagy induced in P. pastoris cells grown in amino acid-rich methanol medium was nitrogen source independent and may be due to a Gcw13-dependent decrease in amino acid uptake during methanol adaptation.
- Published
- 2019
- Full Text
- View/download PDF
48. Genome-wide screening of Saccharomyces cerevisiae deletion mutants reveals cellular processes required for tolerance to the cell wall antagonist calcofluor white
- Author
-
Ying Lin, Kerui Lin, Hong Chen, Shuangyan Han, Jingwen Li, Suiping Zheng, Shuli Liang, and Fengguang Zhao
- Subjects
0301 basic medicine ,Genes, Fungal ,Saccharomyces cerevisiae ,Biophysics ,Vacuole ,Calcofluor-white ,Endocytosis ,Biochemistry ,Cell wall ,03 medical and health sciences ,0302 clinical medicine ,Cell Wall ,Protein Interaction Mapping ,Genetic Testing ,Molecular Biology ,Gene ,biology ,Chemistry ,Benzenesulfonates ,Autophagy ,Wild type ,Cell Biology ,biology.organism_classification ,Adaptation, Physiological ,Cell biology ,030104 developmental biology ,030220 oncology & carcinogenesis ,Genome, Fungal ,Gene Deletion - Abstract
We screened a haploid library of Saccharomyces cerevisiae single-gene deletion mutants to identify nonessential genes associated with increased sensitivity to or resistance against the cell wall antagonist calcofluor white. Through a genome-wide screen, we isolated 537 strains that had an altered growth rate relative to wild type, of which 485 showed increased sensitivity and 52 showed increased resistance to calcofluor white. The MAPK signaling pathway, N-glycan biosynthesis, endocytosis, vacuole acidification, autophagy, and the sulfur relay system were identified as being associated with calcofluor white sensitivity. Resistance genes were mainly involved in chitin metabolism and the RIM101 pathway or encoded several components of the ESCRT complexes or related to cysteine and methionine metabolism and RNA degradation. Further investigation indicated a clear global response network that S. cerevisiae relies on in the presence of the cell wall antagonist calcofluor white, which may help us to understand fungal cell wall remodeling and the mechanisms of toxicity of calcofluor white with respect to eukaryotic cells.
- Published
- 2019
- Full Text
- View/download PDF
49. A kinetic model to optimize and direct the dose ratio of Dsz enzymes in the 4S desulfurization pathway in vitro and in vivo
- Author
-
Zhijie Guo, Lu Li, Xihao Liao, Ying Lin, Shuli Liang, Wei Zhang, and Lei Ye
- Subjects
0106 biological sciences ,0301 basic medicine ,Bioengineering ,Models, Biological ,01 natural sciences ,Applied Microbiology and Biotechnology ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,In vivo ,law ,010608 biotechnology ,Escherichia coli ,Cloning, Molecular ,chemistry.chemical_classification ,Strain (chemistry) ,General Medicine ,In vitro ,Enzymes ,Flue-gas desulfurization ,Kinetics ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,Dibenzothiophene ,Yield (chemistry) ,Recombinant DNA ,Metabolic Networks and Pathways ,Sulfur ,Biotechnology - Abstract
To enhance the biodesulfurization rate using a kinetic model that directs the ratio of Dsz enzymes. This study established a kinetic model that predicted the optimal ratio of Dsz enzymes in the 4S biodesulfurization system to be A:B:C = 1:2:4 and 1:4:2. When BCAD+1A+4B+2C, the conversion rate of dibenzothiophene (DBT) to 2-hydroxybiphenyl (HBP) was close to 100% in vitro. When the gene dose of dszC was increased, the HBP yield of the recombinant strain BL21(DE3)/BCAD + C reached approximately 0.012 mM in vivo, which was approximately 6-fold higher than that of the BCAD strain. According to the results predicted by the enzyme kinetic model, maintaining higher concentrations of DszC and DszB in the desulfurization system can effectively improve the desulfurization efficiency.
- Published
- 2019
- Full Text
- View/download PDF
50. Clinical practice guidelines for the diagnosis and treatment of adult diffuse glioma‐related epilepsy
- Author
-
Jiwen Xu, Qing Mao, Xianzeng Liu, Xia Shan, Weimin Wang, Tao Jiang, Xiaoyan Liu, Jian Zhou, Jinsong Wu, Ming Zhao, Lei Wang, Xinguang Yu, Wenbin Ma, Zhi Song, Xing Fan, Yuanxiang Lin, Zhen Hong, Xun Wu, Zhixiong Liu, Xuejun Yang, Yan Qu, Yongpin You, Liang Li, Tianming Yang, Xuefeng Wang, Jianguo Zhang, Ping Ding, Chuanlu Jiang, Shichuo Li, Songtao Qi, Wei Zhang, Gan You, Yuping Wang, Guoming Luan, Wenling Li, Hui Yang, Wenbin Li, Shuli Liang, Wei-Ping Liao, Ling Chen, and Xingzhou Liu
- Subjects
0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,China ,Reviews ,Review ,lcsh:RC254-282 ,Neurosurgical Procedures ,03 medical and health sciences ,Diffuse Glioma ,Epilepsy ,0302 clinical medicine ,Quality of life ,Drug Therapy ,medicine ,polycyclic compounds ,Humans ,Radiology, Nuclear Medicine and imaging ,diagnosis and treatment ,Intensive care medicine ,Evidence-Based Medicine ,business.industry ,Brain Neoplasms ,Clinical Cancer Research ,Evidence-based medicine ,Guideline ,Glioma ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Clinical Practice ,030104 developmental biology ,Clinical research ,Oncology ,030220 oncology & carcinogenesis ,Practice Guidelines as Topic ,Quality of Life ,epilepsy ,Anticonvulsants ,business ,Psychosocial ,guideline ,adult diffuse glioma - Abstract
Background Glioma‐related epilepsy (GRE) is defined as symptomatic epileptic seizures secondary to gliomas, it brings both heavy financial and psychosocial burdens to patients with diffuse glioma and significantly decreases their quality of life. To date, there have been no clinical guidelines that provide recommendations for the optimal diagnostic and therapeutic procedures for GRE patients. Methods In March 2017, the Joint Task Force for GRE of China Association Against Epilepsy and Society for Neuro‐Oncology of China launched the guideline committee for the diagnosis and treatment of GRE. The guideline committee conducted a comprehensive review of relevant domestic and international literatures that were evaluated and graded based on the Oxford Centre for Evidence‐Based Medicine Levels of Evidence, and then held three consensus meetings to discuss relevant recommendations. The recommendations were eventually given according to those relevant literatures, together with the experiences in the diagnosis and treatment of over 3000 GRE cases from 24 tertiary level hospitals that specialize in clinical research of epilepsy, glioma, and GRE in China. Results The manuscript presented the current standard recommendations for the diagnostic and therapeutic procedures of GRE. Conclusions The current work will provide a framework and assurance for the diagnosis and treatment strategy of GRE to reduce complications and costs caused by unnecessary treatment. Additionally, it can serve as a reference for all professionals involved in the management of patients with GRE.
- Published
- 2019
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.