1. Unique haplotype in exon 3 of cone opsin mRNA affects splicing of its precursor, leading to congenital color vision defect
- Author
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Sanae Muraki-Oda, Hisao Ueyama, Shoko Tanabe, Shinichi Yamade, Hisakazu Ogita, Takahiro Yamashita, and Yoshinori Shichida
- Subjects
Male ,Molecular Sequence Data ,Mutation, Missense ,Biophysics ,Color Vision Defects ,Biology ,Biochemistry ,Exon ,Asian People ,Japan ,Humans ,Amino Acid Sequence ,RNA, Messenger ,Northern blot ,Molecular Biology ,Gene ,Genetics ,Expression vector ,Rod Opsins ,Intron ,Exons ,Cell Biology ,Cone Opsins ,Molecular biology ,Alternative Splicing ,HEK293 Cells ,Haplotypes ,OPN1LW ,RNA splicing ,Minigene - Abstract
We have analyzed L/M visual pigment gene arrays in 119 Japanese men with protanopia color vision defect and found that five had a normal gene order of L-M. Among the five men, two (identified as A376 and A642) had apparently normal L genes. To clarify their L gene defect, the whole L or M gene from A376 and control subjects was cloned in an expression vector. Total RNA extracted from the transfected HEK293 cells was analyzed by Northern blot and reverse transcription-polymerase chain reaction. The product from the cloned L gene of A376 was smaller than the normal control due to the absence of exon 3. To investigate such exon-skipping at splicing, minigenes of exon 3 accompanying introns 2 and 3 were prepared from A376, A642, and control subjects. The minigenes of A376 (L) and A642 (L) showed the product lacking exon 3 only, while the minigene of normal control N44 (L) showed the product retaining exon 3 only. Exchanging of introns 2 and 3 between the A376 (L) and N44 (L) minigenes showed that the skipping of exon 3 was caused by the exon itself. Seven differences in exon 3 between A376 (L) and N44 (L) were all within already-known polymorphisms as follows: G(151-3), C(153-1), G(155-3), A(171-1), T(171-3), G(178-1) and G(180-1) in A376 (L) and A642 (L), and A(151-3), A(153-1), C(155-3), G(171-1), G(171-3), A(178-1) and T(180-1) in N44 (L). An in vitro mutagenesis experiment with these nucleotides in the minigenes showed that exon 3 was completely skipped at splicing only in the haplotype observed in A376 (L) and A642 (L). These results suggest that complete skipping of exon 3 at splicing, due to the unique haplotype of the exon, causes loss of expression of L-opsin in these men.
- Published
- 2012
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