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In this paper we generalize previous work on decomposition in three-dimensional orbifolds by 2-groups realized as analogues of central extensions, to orbifolds by more general 2-groups. We describe the computation of such orbifolds in physics, state a version of the decomposition conjecture, and then compute in numerous examples, checking that decomposition works as advertised., 37 pages, LaTeX

In this paper we propose a definition of torsion refined Gopakumar-Vafa (GV) invariants for Calabi-Yau threefolds with terminal nodal singularities that do not admit K\"ahler crepant resolutions. Physically, the refinement takes into account the charge of five-dimensional BPS states under a discrete gauge symmetry in M-theory. We propose a mathematical definition of the invariants in terms of the geometry of all non-K\"ahler crepant resolutions taken together. The invariants are encoded in the A-model topological string partition functions associated to non-commutative (nc) resolutions of the Calabi-Yau. Our main example will be a singular degeneration of the generic Calabi-Yau double cover of $\mathbb{P}^3$ and leads to an enumerative interpretation of the topological string partition function of a hybrid Landau-Ginzburg model. Our results generalize a recent physical proposal made in the context of torus fibered Calabi-Yau manifolds by one of the authors and clarify the associated enumerative geometry., Comment: 78+30 pages. Fixed acknowledgements and minor typos

We prove a `Whitney' presentation, and a `Coulomb branch' presentation, for the torus equivariant quantum K theory of the Grassmann manifold $\mathrm{Gr}(k;n)$, inspired from physics, and stated in an earlier paper. The first presentation is obtained by quantum deforming the product of the Hirzebruch $\lambda_y$ classes of the tautological bundles. In physics, the $\lambda_y$ classes arise as certain Wilson line operators. The second presentation is obtained from the Coulomb branch equations involving the partial derivatives of a twisted superpotential from supersymmetric gauge theory. This is closest to a presentation obtained by Gorbounov and Korff, utilizing integrable systems techniques. Algebraically, we relate the Coulomb and Whitney presentations utilizing transition matrices from the (equivariant) Grothendieck polynomials to the (equivariant) complete homogeneous symmetric polynomials. The calculations of K-theoretic Gromov-Witten invariants of wedge powers of the tautological subbundles on the Grassmannian utilize the `quantum=classical' statement., Comment: 39 pages; v2: rewrote Appendix A by utilizing the hypothesis that R is complete in the I-adic topology. This corrects a missing hypothesis in the Appendix from v1 of the paper. Fixed several minor typos

We review work on `decomposition,' a property of two-dimensional theories with 1-form symmetries and, more generally, d-dimensional theories with (d-1)-form symmetries. Decomposition is the observation that such quantum field theories are equivalent to (`decompose into') disjoint unions of other QFTs, known in this context as "universes." Examples include two-dimensional gauge theories and orbifolds with matter invariant under a subgroup of the gauge group. Decomposition explains and relates several physical properties of these theories -- for example, restrictions on allowed instantons arise as a "multiverse interference effect" between contributions from constituent universes. First worked out in 2006 as part of efforts to resolve technical questions in string propagation on stacks, decomposition has been the driver of a number of developments since. We give a general overview of decomposition, describe features of decomposition arising in gauge theories, then dive into specifics for orbifolds. We conclude with a discussion of the recent application to anomaly resolution of Wang-Wen-Witten in two-dimensional orbifolds. This is a contribution to the proceedings of the conference Two-dimensional supersymmetric theories and related topics (Matrix Institute, Australia, January 2022), giving an overview of a talk given there and elsewhere., 24 pages, LaTeX

In this article we review how categorical equivalences are realized by renormalization group flow in physical realizations of stacks, derived categories, and derived schemes. We begin by reviewing the physical realization of sigma models on stacks, as (universality classes of) gauged sigma models, and look in particular at properties of sigma models on gerbes (equivalently, sigma models with restrictions on nonperturbative sectors), and decomposition, in which two-dimensional sigma models on gerbes decompose into disjoint unions of ordinary theories. We also discuss stack structures on examples of moduli spaces of SCFTs, focusing on elliptic curves, and implications of subtleties there for string dualities in other dimensions. In the second part of this article, we review the physical realization of derived categories in terms of renormalization group flow (time evolution) of combinations of D-branes, antibranes, and tachyons. In the third part of this article, we review how Landau-Ginzburg models provide a physical realization of derived schemes, and also outline an example of a derived structure on a moduli spaces of SCFTs., 17 pages, Contribution to Proceedings of LMS/EPSRC Durham Symposium Higher Structures in M-Theory, August 2018

In this work we study genus one fibrations in Calabi-Yau three-folds with a non-trivial first fundamental group. The manifolds under consideration are constructed as smooth quotients of complete intersection Calabi-Yau three-folds (CICYs) by a freely acting, discrete automorphism. By probing the compatibility of symmetries with genus one fibrations (that is, discrete group actions which preserve a local decomposition of the manifold into fiber and base) we find fibrations that are inherited from fibrations on the covering spaces. Of the 7,890 CICY three-folds, 195 exhibit known discrete symmetries, leading to a total of 1,695 quotient manifolds. By scanning over 20,700 fiber/symmetry pairs on the covering spaces we find 17,161 fibrations on the quotient Calabi-Yau manifolds. It is found that the vast majority of the non-simply connected manifolds studied exhibit multiple different genus one fibrations - echoing a similar ubiquity of such structures that has been observed in other data sets. The results are available at [1]. The possible base manifolds are all singular and are catalogued. These Calabi-Yau fibrations generically exhibit multiple fibers and are of interest in F-theory as backgrounds leading to theories with superconformal loci and discretely charged matter. NSF [PHY-1720321] The work of L.A. and J.G. is supported in part by NSF grant PHY-1720321. This research is part of the working group activities of the the 4-VA initiative "A Synthesis of Two Approaches to String Phenomenology".

In this paper we give gauged linear sigma model (GLSM) realizations of a number of geometries not previously presented in GLSMs. We begin by describing GLSM realizations of maps including Veronese and Segre embeddings, which can be applied to give GLSMs explicitly describing non-complete intersection constructions such as the intersection of one hypersurface with the image under some map of another. We also discuss GLSMs for intersections of Grassmannians and Pfaffians with one another, and with their images under various maps, which sometimes form exotic constructions of Calabi-Yaus, as well as GLSMs for other exotic Calabi-Yau constructions of Kanazawa. Much of this paper focuses on a specific set of examples of GLSMs for intersections of Grassmannians G(2, N) with themselves after a linear rotation, including the Calabi-Yau case N = 5. One phase of the GLSM realizes an intersection of two Grassmannians, the other phase realizes an intersection of two Pfaffians. The GLSM has two nonabelian factors in its gauge group, and we consider dualities in those factors. In both the original GLSM and a double-dual, one geometric phase is realized perturbatively (as the critical locus of a superpotential), and the other via quantum effects. Dualizing on a single gauge group factor yields a model in which each geometry is realized through a simultaneous combination of perturbative and quantum effects. NSF [PHY-1417410, PHY-1720321] We would like to thank S. Galkin, S. Katz, I. Melnikov, D. Morrison, T. Pantev, J. Rennemo, M. Romo, S. Sam, E. Scheidegger and E. Segal for useful conversations. E. S. was partially supported by NSF grants PHY-1417410 and PHY-1720321.

We study 2d N = (0, 2) supersymmetric quiver gauge theories that describe the low-energy dynamics of D1-branes at Calabi-Yau fourfold (CY4) singularities. On general grounds, the holomorphic sector of these theories - matter content and (classical) superpotential interactions - should be fully captured by the topological B-model on the CY4. By studying a number of examples, we confirm this expectation and flesh out the dictionary between B-brane category and supersymmetric quiver, the matter content of the supersymmetric quiver is encoded in morphisms between B-branes (that is, Ext groups of coherent sheaves), while the superpotential interactions are encoded in the A(infinity) algebra satisfied by the morphisms. This provides us with a derivation of the supersymmetric quiver directly from the CY4 geometry. We also suggest a relation between triality of N = (0, 2) gauge theories and certain mutations of exceptional collections of sheaves. 0d N = 1 supersymmetric quivers, corresponding to D-instantons probing CY5 singularities, can be discussed similarly. NSF [PHY-1417410, PHY-1720321] We would like to thank P. Aspinwall, S. Franco, D. Ghim, C. Herzog, S. Katz, W. Lerche, I. Melnikov, T. Pantev, and R.K. Seong for useful conversations and comments. E.S. was partially supported by NSF grants PHY-1417410 and PHY-1720321.

In this paper we propose (0,2) mirrors for general Fano toric varieties with special tangent bundle deformations, corresponding to subsets of toric deformations. Our mirrors are of the form of (B/2-twisted) (0,2) Landau-Ginzburg models, matching Hori-Vafa mirrors on the (2,2) locus. We compare our predictions to (0,2) mirrors obtained by Chen et al. for certain examples of toric varieties, and find that they match. We also briefly outline conjectures for analogous results for hypersurfaces in Fano toric varieties. Our methods utilize results from supersymmetric localization, which allows us to incidentally gain occasional further insights into GLSM-based (2,2) mirror constructions. For example, we explicitly verify that closed string correlation functions of the original A-twisted GLSM match those of the mirror B-twisted Landau-Ginzburg model, as well as (0,2) deformations thereof. NSF [PHY-1417410] We would like to thank L. Anderson, C. Closset, J. Gray, I. Melnikov, and R. Plesser for useful conversations. E.S. was partially supported by NSF grant PHY-1417410.

In this paper, we extend our previous work to construct (0, 2) Toda-like mirrors to A/2-twisted theories on more general spaces, as part of a program of understanding (0,2) mirror symmetry. Specifically, we propose (0, 2) mirrors to GLSMs on toric del Pezzo surfaces and Hirzebruch surfaces with deformations of the tangent bundle. We check the results by comparing correlation functions, global symmetries, as well as geometric blowdowns with the corresponding (0, 2) Toda-like mirrors. We also briefly discuss Grassmannian manifolds. NSF [PHY-1417410] We would like to thank K. Hori, S. Katz, I. Melnikov, and L. Mihalcea for useful conversations. E.S. was partially supported by NSF grant PHY-1417410.

We study two-dimensional N=(0, 2) supersymmetric gauged linear sigma models (GLSMs) using supersymmetric localization. We consider N=(0, 2) theories with an R-symmetry, which can always be defined on curved space by a pseudo-topological twist while preserving one of the two supercharges of flat space. For GLSMs which are deformations of N=(0, 2) GILSMs and retain a Coulomb branch, we consider the A/2-twist and compute the genus-zero correlation functions of certain pseudo-chiral operators, which generalize the simplest twisted chiral ring operators away from the N=(0, 2) locus. These correlation functions can be written in terms of a certain residue operation on the Coulomb branch, generalizing the Jeffrey-Kirwan residue prescription relevant for the N=(0, 2) locus. For abelian GLSMs, we reproduce existing results with new formulas that render the quantum sheaf cohomology relations and other properties manifest. For non-abelian GLSMs, our methods lead to new results. As an example, we briefly discuss the quantum sheaf cohomology of the C rassmannian manifold. NSF [PHY-1316033, PHY-1417410] We would like to thank L. Anderson, F. Benini, S. Cremonesi, Y. Deng, Z. Komargodski, Z. Lu and I. Melnikov for useful discussions. We thank in particular D. Park for many useful discussions and for collaboration at the beginning of this project. We would also like to thank L. Anderson for giving us permission to include here the results of appendix D, which were originally worked out for [581. B. Jia was partially supported by NSF grant PHY-1316033. E. Sharpe was partially supported by NSF grant PHY-1417410.

We study two-dimensional $\mathcal{N}{=}(0,2)$ supersymmetric gauged linear sigma models (GLSMs) using supersymmetric localization. We consider $\mathcal{N}{=}(0,2)$ theories with an $R$-symmetry, which can always be defined on curved space by a pseudo-topological twist while preserving one of the two supercharges of flat space. For GLSMs which are deformations of $\mathcal{N}{=}(2,2)$ GLSMs and retain a Coulomb branch, we consider the $A/2$-twist and compute the genus-zero correlation functions of certain pseudo-chiral operators, which generalize the simplest twisted chiral ring operators away from the $\mathcal{N}{=}(2,2)$ locus. These correlation functions can be written in terms of a certain residue operation on the Coulomb branch, generalizing the Jeffrey-Kirwan residue prescription relevant for the $\mathcal{N}{=}(2,2)$ locus. For abelian GLSMs, we reproduce existing results with new formulas that render the quantum sheaf cohomology relations and other properties manifest. For non-abelian GLSMs, our methods lead to new results. As an example, we briefly discuss the quantum sheaf cohomology of the Grassmannian manifold., 39 pages plus appendices. v2: added references and corrected typos

An N=1, d=4 supersymmetric compactification of the perturbative heterotic string is described by a d=2 (0,2) superconformal field theory. The first-order marginal deformations of the internal (0,2) SCFT are in 1 to 1 correspondence with massless gauge-neutral scalars in the spacetime theory. Working at tree-level in the alpha' expansion, we describe these first order deformations for SCFTs with a (0,2) non-linear sigma model description. Our results clarify the structure of deformations of heterotic Calabi-Yau compactifications and more general heterotic flux vacua., Comment: 14 pages

In this highly speculative note we conjecture that it may be possible to understand features of coincident D-branes, such as the appearance of enhanced non-abelian gauge symmetry, in a purely geometric fashion, using a form of geometry known as scheme theory. We give a very brief introduction to some relevant ideas from scheme theory, and point out how these ideas work in special cases., 10 pages, LaTeX

In a previous paper we outlined how discrete torsion can be understood geometrically as an analogue of orbifold U(1) Wilson lines. In this paper we shall prove the remaining details. More precisely, in this paper we describe gerbes in terms of objects known as stacks (essentially, sheaves of categories), and develop much of the basic theory of gerbes in such language. Then, once the relevant technology has been described, we give a first-principles geometric derivation of discrete torsion. In other words, we define equivariant gerbes, and classify equivariant structures on gerbes and on gerbes with connection. We prove that in general, the set of equivariant structures on a gerbe with connection is a torsor under a group which includes H^2(G,U(1)), where G is the orbifold group. In special cases, such as trivial gerbes, the set of equivariant structures can furthermore be canonically identified with the group., 75 pages, must LaTeX 3x; v2: minor refinement in conclusions, other minor upgrades

Norsk tidsskrift for misjonsvitenskap, Vol 23 Nr 1 (1969): Norsk tidsskrift for misjonsvitenskap

In this paper we propose a systematic construction of mirrors of nonabelian two dimensional (2,2) supersymmetric gauge theories. Specifically, we propose a construction of B-twisted Landau-Ginzburg orbifolds whose correlation functions match those of A-twisted supersymmetric gauge theories, and whose critical loci reproduce quantum cohomology and Coulomb branch relations in A-twisted gauge theories, generalizing the Hori-Vafa mirror construction. We check this proposal in a wide variety of examples. For instance, we construct mirrors corresponding to Grassmannians and two-step flag manifolds, as well as complete intersections therein, and explicitly check predictions for correlation functions and quantum cohomology rings, as well as other properties. We also consider mirrors to examples of gauge theories with U(k), U(k1) x U(k2), SU(k), SO(2k), SO(2k+1), and Sp(2k) gauge groups and a variety of matter representations, and compare to results in the literature for the original two dimensional gauge theories. Finally, we perform consistency checks of conjectures of Aharony et al that a two dimensional (2,2) supersymmetric pure SU(k) gauge theory flows to a theory of k-1 free twisted chiral multiplets, and also consider the analogous question in pure SO(3) theories. For one discrete theta angle, the SO(3) theory behaves the same as the SU(2) theory; for the other, supersymmetry is broken. We also perform consistency checks of analogous statements in pure supersymmetric SO and Sp gauge theories in two dimensions., 123 pages, LaTeX; v2: typos fixed and references added; v3: more references added

Quantum information technologies offer significantly more computational power for certain tasks and secure communication lines compared to the available classical machines. In recent years there have been numerous proposals for the implementation of quantum computers in several different systems that each come with their own advantages and challenges. This dissertation primarily focuses on challenges, specifically interactions with the environment, and applications of two of such systems: Semiconductor quantum dots and topological insulators. The first part of the dissertation is devoted to the study of semiconductor quantum dots as candidates for quantum information storage and sources of single-photon emission. The spin of the electron trapped in a self-assembled quantum dot can be used as a quantum bit of information for quantum technology applications. This system possesses desirable photon emission properties, including efficiency and tunability, which make it one of the most advanced single-photon emitters. This interface is also actively explored for the generation of complex entangled photonic states with applications in quantum computing, networks, and sensing. First, an overview of the relevant developments in the field will be discussed and our recent contributions, including protocols for the control of the spin and a scheme for the generation of entangled photon states from coupled quantum dots, will be presented. We then look at the interaction between the electron and the surrounding nuclear spins and describe how its interplay with optical driving can lead to dynamic nuclear polarization. The second part of the dissertation follows a similar study in topological insulators: The role of time-reversal breaking magnetic impurities in topological materials and how spinful impurities enable backscattering mechanisms by lifting the topological protection of edge modes. I will present a model that allows for an analytical study of the effects of magnetic impurities within an experimental framework. It will be discussed how the same platform also enables a novel approach for applications of spintronics and quantum information, such as studying the entanglement entropy between the impurities and chiral modes of the system. Doctor of Philosophy Quantum information science has received special attention in recent years due to its promising advantages compared to classical machines. Building a functional quantum processor is an ongoing effort that has enjoyed enormous advancements over the past few years. Several different condensed matter platforms have been considered as potential candidates for this purpose. This dissertation addresses some of the major challenges in two of the candidate platforms: Quantum dots and topological insulators. We look at methods for achieving high-performance optical control of quantum dots. We further utilize quantum dots special ability to emit photons for specific quantum technology applications. We also address the nuclear spin problem in these systems which is the main source of destruction of quantum information and one of the main obstacles in building a quantum computer. This is followed by the study of a similar problem in topological insulators: Addressing the interaction with magnetic impurities of topological insulators. Included with each of these topics is a description of relevant experimental setups. As such, the studies presented in this dissertation pave the way for a better understanding of the two major obstacles of hyperfine interactions and the optical controllability of these platforms.

In this dissertation we study several topics related to the geometry and physics of heterotic string compactification. After an introduction to some of the basic ideas of this field, we review the heterotic line bundle standard model construction and a complex structure mod- uli stabilization mechanism associated to certain hidden sector gauge bundles. Once this foundational material has been presented, we move on to the original research of this disser- tation. We present a scan over all known heterotic line bundle standard models to examine the frequency with which the particle spectrum is forced to change, or "jump," by the hidden sector moduli stabilization mechanism just mentioned. We find a significant percentage of forced spectrum jumping in those models where such a change of particle content is possible. This result suggests that one should consider moduli stabilization concurrently with model building, and that failing to do so could lead to misleading results. We also use state of the art techniques to study Yukawa couplings in these models. We find that a large portion of Yukawa couplings which naively would be expected to be non-zero actually vanish due to certain topological selection rules. There is no known symmetry which is responsible for this vanishing. In the final part of this dissertation, we study the Chern-Simons contribution to the superpotential of heterotic theories. This quantity is very important in determining the vacuum stability of these models. By explicitly building real bundle morphisms between vec- tor bundles over Calabi-Yau manifolds, we show that this contribution to the superpotential vanishes in many cases. However, by working with more complicated, and realistic geome- tries, we also present examples where the Chern-Simons contribution to the superpotential is non-zero, and indeed fractional. Doctor of Philosophy String theory is a candidate for a unified theory of all of the known interactions of nature. To be consistent, the theory needs to be formulated in 9 spatial dimensions, rather than the 3 of everyday experience. To connect string theory with reality, we need to reproduce the known physics of 3 dimensions from the 9 dimensional theory by hiding, or "compactifying," 6 directions on a compact internal space. The most common choice for such an internal space is called a Calabi-Yau manifold. In this dissertation, we study how the geometry of the Calabi-Yau manifold determines physical quantities seen in 3 dimensions such as the number of particle families, particle interactions and potential energy. The first project in this dissertation studies to what extent the process of making the Calabi-Yau manifold rigid, something which is required observationally, affects the particle spectrum seen in 3 dimensions. By scanning over a large model set, we conclude that computation of the particle spectrum and such "moduli stabilization" issues should be considered in concert, and not in isolation. We also showed that a large portion of the interactions that one would naively expect between the particles in such string models are actually absent. There is no known symmetry of the theory that accounts for this structure, which is linked to the topology of the extra spatial dimensions. In the final part of the dissertation, we show how to calculate previously unknown contributions to the potential energy of these string theory models. By linking to results from the mathematics literature, we show that these contributions vanish in many cases. However, we present examples where it is non-zero, a fact of crucial importance in understanding the vacua of heterotic string theories.

This thesis studies N=(2,2) gauged linear sigma models (GLSMs) and three-dimensional N=2 Chern-Simons-matter theories and their mathematical applications. After a brief review of GLSMs, we systematically study nonabelian GLSMs for symplectic and orthogonal Grassmannians, following up a proposal in the math community. As consistency checks, we have compared global symmetries, Witten indices, and Calabi-Yau conditions to geometric expectations. We also compute their nonabelian mirrors following the recently developed nonabelian mirror symmetry. In addition, for symplectic Grassmannians, we use the effective twisted superpotential on the Coulomb branch of the GLSM to calculate the ordinary and equivariant quantum cohomology of the space, matching results in the math literature. Then we discuss 3d gauge theories with Chern-Simons terms. We propose a complementary method to derive the quantum K-theory relations of projective spaces and Grassmannians from the corresponding 3d gauge theory with a suitable choice of the Chern-Simons levels. In the derivation, we compare to standard presentations in terms of Schubert cycles, and also propose a new description in terms of shifted Wilson lines, which can be generalized to symplectic Grassmannians. Using this method, we are able to obtain quantum K-theory relations, which match known math results, as well as make predictions. Doctor of Philosophy In this thesis, we study two specific models of supersymmetric gauge theories, namely two-dimensional N=(2,2) gauged linear sigma models (GLSMs) and three-dimensional N=2 Chern-Simons-matter theories. These models have played an important role in quantum field theory and string theory for decades, and generated many fruitful results, improving our understanding of Nature by drawing on many branches in mathematics, such as complex differential geometry, intersection theory, quantum cohomology/quantum K-theory, enumerative geometry, and many others. Specifically, this thesis is devoted to studying their applications in quantum cohomology and quantum K-theory. In the first part of this thesis, we systematically study two-dimensional GLSMs for symplectic and orthogonal Grassmannians, generalizing the study for ordinary Grassmannians. By analyzing the Coulomb vacua structure of the GLSMs for symplectic Grassmannians, we are able to obtain the ordinary and equivariant quantum cohomology for these spaces. A similar methodology applies to 3d Chern-Simons-matter theories and quantum K-theory, for which we propose a new description in terms of shifted Wilson lines.

Nuclear reactors have played an essential role in developing our current understanding of neutrinos. The precision measurement of these high-flux, pure-flavor and controllable artificial neutrino sources shed lights on a wide range of fundamental questions in physics. Specifically, the Reactor Antineutrino Anomaly hints that there may exist a novel eV-scale sterile neutrino, which requires new physics beyond the Standard Model. Performing reactor neutrino spectrum measurements at very-short baseline will improve our imperfect understanding of antineutrino emission from fissile material. CHANDLER is a new-generation neutrino experiment aiming for reactor antineutrino spectrum measurements, to test the eV-scale sterile neutrino oscillation hypothesis unambiguously. The second prototype detector, MiniCHANDLER, was deployed 25 meters from a $2.9~GW_{th}$ commercial nuclear reactor in North Anna, Virginia. To fight against the overwhelming background arising from its surface-level deployment, CHANDLER detectors adopt a novel design using lithium-6 ($^6$Li) loaded zinc sulfide (ZnS) scintillator to tag neutron capture events, which significantly improves the IBD detection efficiency. The use of the Raghavan optical lattice brings enormous enhancement of light collection towards high energy resolution, which unlocks reconstruction of event topology to further suppress backgrounds. The ability of measuring reactor antineutrino spectra enables the potential application of CHANDLER technology in nuclear nonproliferation. This thesis features the prototype detectors instrumentation, data analysis development and Monte Carlo study for the CHANDLER experiment during 2016 to 2020. The detector calibration and energy reconstruction with vertical muon forms a core piece of this thesis. We report our observation of IBD spectrum with 5.5$sigma$ significance with a four month deployment of the minimal shielded MiniCHANDLER prototype at North Anna. The application of separation cuts and topological selections in the analysis are instrumental for a segmented plastic scintillator detector. We also present our results from the proton scintillation quenching measurement at Triangle Universities Nuclear Laboratory, with the deployment of the first prototype detector, MicroCHANDLER, at a neutron beam. Doctor of Philosophy The sterile neutrino is a hypothetical particle yet to be observed, whose existence is suggested by a number of physics experiments with strong theoretical motivation. Due to the low chance of a neutrino interacting with matter, most neutrino detectors use a special process called inverse beta decay (IBD) to detect them. The CHANDLER experiment set out to measure antineutrinos produced by a reactor in the vicinity of its core. We found a significant signal of antineutrinos from our four-month deployment. This thesis details the technology and analysis that enables neutrino detection and improves detection efficiency. We also shows how we squeeze out the maximum information available to us from raw data, through the process called reconstruction. Other research topics related to the CHANDLER detector RandD are also included in this thesis.

In this thesis, we apply the methods of numerical differential geometry to several different problems in heterotic Calabi-Yau compactification. We review algorithms for computing both the Ricci-flat metric on Calabi-Yau manifolds and Hermitian Yang-Mills connections on poly-stable holomorphic vector bundles over those spaces. We apply the numerical techniques for obtaining Ricci-flat metrics to study hierarchies of curvature scales over Calabi-Yau manifolds as a function of their complex structure moduli. The work we present successfully finds known large curvature regions on these manifolds, and provides useful information about curvature variation at general points in moduli space. This research is important in determining the validity of the low energy effective theories used in the description of Calabi-Yau compactifications. The numerical techniques for obtaining Hermitian Yang-Mills connections are applied in two different fashions in this thesis. First, we demonstrate that they can be successfully used to numerically determine the stability of vector bundles with qualitatively different features to those that have appeared in the literature to date. Second, we use these methods to further develop some calculations of holomorphic Chern-Simons invariant contributions to the heterotic superpotential that have recently appeared in the literature. A complete understanding of these quantities requires explicit knowledge of the Hermitian Yang-Mills connections involved. This feature makes such investigations prohibitively hard to pursue analytically, and a natural target for numerical techniques. Doctor of Philosophy String theory is one of the most promising attempts to unify gravity with the other three fundamental interactions (electromagnetic, weak and strong) of nature. It is believed to give a self-consistent theory of quantum gravity, which, at low energy, could contain all of the physics that we known, from the Standard Model of particle physics to cosmology. String theories are often defined in nine spatial dimensions. To obtain a theory with three spatial dimensions one needs to hide, or ``compactify," six of the dimensions on a compact space which is small enough to have remained unobserved by our experiments. Unfortunately, the geometries of these spaces, called Calabi-Yau manifolds, and additional structures associated to them, called holomorphic vector bundles, turns out to be extremely complex. The equations determining the exact solutions of string theory for these quantities are highly non-linear partial differential equations (PDE's) which are simply impossible to solve analytically with currently known techniques. Nevertheless, knowledge of these solutions is critical in understanding much of the detailed physics that these theories imply. For example, to compute how the particles seen in three dimensions would interact with each other in a string theoretic model, the explicit form of these solutions would be required. Fortunately, numerical methods do exist for finding approximate solutions to the PDE's of interest. In this thesis we implement these algorithmic techniques and use them to study a variety of physical questions associated to the attempt to link string theory to the physics observed in our experiments.

In this work, we extend the well-known spectral cover construction first developed by Friedman, Morgan, and Witten to describe more general vector bundles on elliptically fibered Calabi-Yau geometries. In particular, we consider the case in which the Calabi-Yau fibration is not in Weierstrass form but can rather contain fibral divisors or multiple sections (i.e., a higher rank Mordell-Weil group). In these cases, general vector bundles defined over such Calabi-Yau manifolds cannot be described by ordinary spectral data. To accomplish this, we employ well-established tools from the mathematics literature of Fourier-Mukai functors. We also generalize existing tools for explicitly computing Fourier-Mukai transforms of stable bundles on elliptic Calabi-Yau manifolds. As an example of these new tools, we produce novel examples of chirality changing small instanton transitions. Next, we provide a geometric formalism that can substantially increase the understood regimes of heterotic/F-theory duality. We consider heterotic target space dual (0,2) GLSMs on elliptically fibered Calabi-Yau manifolds. In this context, each half of the ``dual" heterotic theories must, in turn, have an F-theory dual. Moreover, the apparent relationship between two heterotic compactifications seen in (0,2) heterotic target space dual pairs should, in principle, induce some putative correspondence between the dual F-theory geometries. It has previously been conjectured in the literature that (0,2) target space duality might manifest in F-theory as multiple $K3$-fibrations of the same elliptically fibered Calabi-Yau manifold. We investigate this conjecture in the context of both 6-dimensional and 4-dimensional effective theories and demonstrate that in general, (0,2) target space duality cannot be explained by such a simple phenomenon alone. In all cases, we provide evidence that non-geometric data in F-theory must play at least some role in the induced F-theory correspondence while leaving the full determination of the putative new F-theory duality to the future work. Finally, we consider F-theory over elliptically fibered manifolds, with a general conic base. Such manifolds are quite standard in F-theory sense, but our goal is to explore the extent of the heterotic/F-theory duality over such manifolds. We consider heterotic target space dual (0,2) GLSMs on elliptically fibered Calabi-Yau manifolds. In this context, each half of the ``dual" heterotic theories must, in turn, have an F-theory dual. Moreover, the apparent relationship between two heterotic compactifications seen in (0,2) heterotic target space dual pairs should, in principle, induce some putative correspondence between the dual F-theory geometries. It has previously been conjectured in the literature that (0,2) target space duality might manifest in F-theory as multiple $K3$-fibrations of the same elliptically fibered Calabi-Yau manifold. We investigate this conjecture in the context of both 6-dimensional and 4-dimensional effective theories and demonstrate that in general, (0,2) target space duality cannot be explained by such a simple phenomenon alone. In all cases, we provide evidence that non-geometric data in F-theory must play at least some role in the induced F-theory correspondence while leaving the full determination of the putative new F-theory duality to the future work. Finally, we consider F-theory over elliptically fibered manifolds, with a general conic base. Such manifolds are quite standard in F-theory sense, but our goal is to explore the extent of the heterotic/F-theory duality over such manifolds. Doctor of Philosophy String theory is the only physical theory that can lead to self-consistent, effective quantum gravity theories. However, quantum mechanics restricts the dimension of the effective spacetime to ten (and eleven) dimensions. Hence, to study the consequences of string theory in four dimensions, one needs to assume the extra six dimensions are curled into small compact dimensions. Upon this ``compactification," it has been shown (mainly in the 1990s) that different classes of string theories can have equivalent four-dimensional physics. Such classes are called dual. The advantage of these dualities is that often they can map perturbative and non-perturbative limits of these theories. The goal of this dissertation is to explore and extend the geometric limitations of the duality between heterotic string theory and F-theory. One of the main tools in this particular duality is the Fourier-Mukai transformation. In particular, we consider Fourier-Mukai transformations over non-standard geometries. As an application, we study the F-theory dual of a heterotic/heterotic duality known as target space duality. As another side application, we derive new types of small instanton transitions in heterotic strings. In the end, we consider F-theory compactified over particular manifolds that if we consider them as a geometry dual to a heterotic string, can lead to unexpected consequences.

In the first part of this thesis, we investigate a way to find the complex structure moduli, for a given background of type IIB string theory in the presence of flux in special cases. We introduce a way to compute the complex structure and axion dilaton moduli explicitly. In the second part, we discuss $(0,2)$ supersymmetric versions of some recent exotic $mathcal{N}=(2,2)$ supersymmetric gauged linear sigma models, describing intersections of Grassmannians. In the next part, we consider mirror symmetry for certain gauge theories with gauge groups $F_4$, $E_6$, and $E_7$. In the last part of this thesis, we study whether certain branched-double-cover constructions in Landau-Ginzburg models can be extended to higher covers. Doctor of Philosophy This thesis concerns string theory, a proposal for unification of general relativity and quantum field theory. In string theory, the building block of all the particles are strings, such that different vibrations of them generate particles. String theory predicts that spacetime is 10-dimensional. In string theorist's intuition, the extra six-dimensional internal space is so small that we haven't detected it yet. The physics that string theory predicts we should observe, is governed by the shape of this six-dimensional space called a `compactification manifold.' In particular, the possible ways in which this geometry can be deformed give rise to light degrees of freedom in the associated observable physical theory. In the first part of this thesis, we determine these degrees of freedom, called moduli, for a large class of solutions of the so-called type IIB string theory. In the second part, we focus on constructing such spaces explicitly. We also show that there can be different equivalent ways of constructing the same internal space. The third part of the thesis concerns mirror symmetry. Two compactification manifolds are called mirror to each other, when they both give the same four-dimensional effective theory. In this part, we describe the mirror of two-dimensional gauge theories with $F_4$, $E_6$, and $E_7$ gauge group, using the Gu-Sharpe proposal.

In the context of (0, 2) gauged linear sigma models, we explore chains of perturbatively dual heterotic string compactifications. The notion of target space duality (TSD) originates in non-geometric phases and can be used to generate distinct GLSMs with shared geometric phases leading to apparently identical target space theories. To date, this duality has largely been studied at the level of counting states in the effective theories. We extend this analysis in several ways. First, we consider the correspondence including the effective potential and loci of enhanced symmetry in dual theories. By engineering vector bundles with non-trivial constraints arising from slope-stability (i.e. D-terms) and holomorphy (i.e. F-terms) the detailed structure of the vacuum space of the dual theories can be explored. Our results give new evidence that GLSM target space duality may provide important hints towards a more complete understanding of (0,2) string dualities. In addition, we consider TSD theories on elliptically fibered Calabi-Yau manifolds. In this context, each half of the "dual" heterotic theories must in turn have an F-theory dual. Moreover, the apparent relationship between two heterotic compactifications seen in (0,2) heterotic target space dual pairs should, in principle, induce some putative correspondence between the dual F-theory geometries. It has previously been conjectured in the literature that (0,2) target space duality might manifest in F-theory as multiple K3- fibrations of the same elliptically fibered Calabi-Yau manifold. In this work we investigate this conjecture in the context of both six-dimensional and four-dimensional effective theories and demonstrate that in general, (0,2) target space duality cannot be explained by such a simple phenomenon alone. Finally, we consider Landau-Ginzburg (LG) phases of TSD theories and explore their massless spectrum. In particular, we investigate TSD pairs involving geometric singularities. We study resolutions of these singularities and their relationship to the duality. Doctor of Philosophy In string theory, the space-time has “hidden” dimensions beyond the three spatial and one time-like dimensions macroscopically seen in our universe. We want to study how the geometries of this “internal space” can affect observable physics, and which geometries are compatible with our universe. Target space duality is a relationship that connects two or more geometries together. In target space duality, gauged linear sigma models (related to string theories) share a common locus (called a Landau-Ginzburg phase) in their parameter space, but are distinct theories. To date, this duality has largely been studied at the level of counting states in the effective theories. In this dissertation, target space duality is studied in more depth. First we extend the analysis to the effective potential and loci of enhanced symmetry. By engineering examples with non-trivial constraints, the detailed structure of the vacuum space of the dual theories can be explored. Our results give new evidence that target space duality may provide important hints towards a more complete understanding of string dualities. We also investigate the conjecture that target space duality might manifest in F-theory, a higher dimensional string theory, as multiple fibrations of the same manifold. We demonstrate that in general, target space duality cannot be explained by such a simple phenomenon alone. In our cases, we provide evidence that non-geometric data in F-theory must play at least some role in the induced F-theory correspondence, while leaving the full determination of the putative new F-theory duality to future work. Finally we explore the complete massless spectrum of the Landau-Ginzburg (LG) phase. Specifically, we calculate the full LG spectra for both sides, and compare the theory with the geometric phases. We find examples in which half of the target space dual geometry is singular. We have probed some approaches to resolving the singularity.

In this dissertation, I study a nonlinear partial differential equation, the complex Ginzburg-Landau (CGL) equation. I first employed the perturbative field-theoretic renormalization group method to investigate the critical dynamics near the continuous non-equilibrium transition limit in this equation with additive noise. Due to the fact that time translation invariance is broken following a critical quench from a random initial configuration, an independent ``initial-slip'' exponent emerges to describe the crossover temporal window between microscopic time scales and the asymptotic long-time regime. My analytic work shows that to first order in a dimensional expansion with respect to the upper critical dimension, the extracted initial-slip exponent in the complex Ginzburg-Landau equation is identical to that of the equilibrium model A. Subsequently, I studied transient behavior in the CGL through numerical calculations. I developed my own code to numerically solve this partial differential equation on a two-dimensional square lattice with periodic boundary conditions, subject to random initial configurations. Aging phenomena are demonstrated in systems with either focusing and defocusing spiral waves, and the related aging exponents, as well as the auto-correlation exponents, are numerically determined. I also investigated nucleation processes when the system is transiting from a turbulent state to the ``frozen'' state. An extracted finite dimensionless barrier in the deep-quenched case and the exponentially decaying distribution of the nucleation times in the near-transition limit are both suggestive that the dynamical transition observed here is discontinuous. This research is supported by the U. S. Department of Energy, Office of Basic Energy Sciences, Division of Materials Science and Engineering under Award DE-FG02-SC0002308 Doctor of Philosophy The complex Ginzburg-Landau equation is one of the most studied nonlinear partial differential equation in the physics community. I study this equation using both analytical and numerical methods. First, I employed the field theory approach to extract the critical initial-slip exponent, which emerges due to the breaking of time translation symmetry and describes the intermediate temporal window between microscopic time scales and the asymptotic long-time regime. I also numerically solved this equation on a two-dimensional square lattice. I studied the scaling behavior in non-equilibrium relaxation processes in situations where defects are interactive but not subject to strong fluctuations. I observed nucleation processes when the system under goes a transition from a strongly fluctuating disordered state to the relatively stable “frozen” state where its dynamics cease. I extracted a finite dimensionless barrier for systems that are quenched deep into the frozen state regime. An exponentially decaying long tail in the nucleation time distribution is found, which suggests a discontinuous transition. This research is supported by the U. S. Department of Energy, Office of Basic Energy Sciences, Division of Materials Science and Engineering under Award DE-FG02-SC0002308.

This thesis is devoted to the study of gauged linear sigma models (GLSMs) and mirror symmetry. The first chapter of this thesis aims to introduce some basics of GLSMs and mirror symmetry. The second chapter contains the author's contributions to new exact results for GLSMs obtained by applying supersymmetric localization. The first part of that chapter concerns supermanifolds. We use supersymmetric localization to show that A-twisted GLSM correlation functions for certain supermanifolds are equivalent to corresponding Atwisted GLSM correlation functions for hypersurfaces. The second part of that chapter defines associated Cartan theories for non-abelian GLSMs by studying partition functions as well as elliptic genera. The third part of that chapter focuses on N=(0,2) GLSMs. For those deformed from N=(2,2) GLSMs, we consider A/2-twisted theories and formulate the genuszero correlation functions in terms of Jeffrey-Kirwan-Grothendieck residues on Coulomb branches, which generalize the Jeffrey-Kirwan residue prescription relevant for the N=(2,2) locus. We reproduce known results for abelian GLSMs, and can systematically calculate more examples with new formulas that render the quantum sheaf cohomology relations and other properties manifest. We also include unpublished results for counting deformation parameters. The third chapter is about mirror symmetry. In the first part of the third chapter, we propose an extension of the Hori-Vafa mirrror construction [25] from abelian (2,2) GLSMs they considered to non-abelian (2,2) GLSMs with connected gauge groups, a potential solution to an old problem. We formally show that topological correlation functions of B-twisted mirror LGs match those of A-twisted gauge theories. In this thesis, we study two examples, Grassmannians and two-step flag manifolds, verifying in each case that the mirror correctly reproduces details ranging from the number of vacua and correlations functions to quantum cohomology relations. In the last part of the third chapter, we propose an extension of the Hori-Vafa construction [25] of (2,2) GLSM mirrors to (0,2) theories obtained from (2,2) theories by special tangent bundle deformations. Our ansatz can systematically produce the (0,2) mirrors of toric varieties and the results are consistent with existing examples which were produced by laborious guesswork. The last chapter briefly discusses some directions that the author would like to pursue in the future. Doctor of Philosophy In this thesis, I summarize my work on gauged linear sigma models (GLSMs) and mirror symmetry. We begin by using supersymmetric localization to show that A-twisted GLSM correlation functions for certain supermanifolds are equivalent to corresponding A-twisted GLSM correlation functions for hypersurfaces. We also define associated Cartan theories for non-abelian GLSMs. We then consider N =(0,2) GLSMs. For those deformed from N =(2,2) GLSMs, we consider A/2-twisted theories and formulate the genus-zero correlation functions on Coulomb branches. We reproduce known results for abelian GLSMs, and can systematically compute more examples with new formulas that render the quantum sheaf cohomology relations and other properties are manifest. We also include unpublished results for counting deformation parameters. We then turn to mirror symmetry, a duality between seemingly-different two-dimensional quantum field theories. We propose an extension of the Hori-Vafa mirror construction [25] from abelian (2,2) GLSMs to non-abelian (2,2) GLSMs with connected gauge groups, a potential solution to an old problem. In this thesis, we study two examples, Grassmannians and two-step flag manifolds, verifying in each case that the mirror correctly reproduces details ranging from the number of vacua and correlations functions to quantum cohomology relations. We then propose an extension of the HoriVafa construction [25] of (2,2) GLSM mirrors to (0,2) theories obtained from (2,2) theories by special tangent bundle deformations. Our ansatz can systematically produce the (0,2) mirrors of toric varieties and the results are consistent with existing examples. We conclude with a discussion of directions that we would like to pursue in the future.

Spontaneous order happens in non-equilibrium systems composed of interacting elements. This phenomenon manifests in both the formation of space-time patterns in reaction-diffusion systems and collective rhythmic behaviors in coupled oscillators. In this thesis, we present the results of two studies: 1) The response of a multi-species predator-prey system to perturbation. 2) The features of a rich attractor space in a system of repulsively coupled Kuramoto oscillators. In the first part, we address this question: how does a complex coarsening system with non-trivial in-domain dynamics respond to perturbations? We choose a cyclic predator-prey model with six species each attacking three others. As a result of this interaction network, two competing domains form, while inside each domain three species play a rock-paper-scissors game which results in the formation of spirals inside the domains. We perturb the system by changing the interaction scheme which leads to a change of alliances and therefore a different spatial pattern. As expected, perturbing a complex space-time pattern results in a complex response. In the second part, we explore the attractor space of a system of repulsively coupled oscillators with non-homogeneous natural frequencies on a hexagonal lattice. Due to the negative coupling and the particular choice of geometry, some of the links between oscillators become frustrated. Coupled oscillators with frustration show similar features as frustrated magnetic systems. We use the parameters of the system like the coupling constant and the width of the frequency distribution to understand the system's attractor space. Further, we study the effects of external noise on the system. We also identify the breaking of time-translation invariance in the absence of external noise, in our system. Doctor of Philosophy Spontaneous ordering is a ubiquitous phenomenon observed in natural systems containing many interacting elements. In some systems the order is observed in the form of spatial patterns. It also can be seen in a population of coupled oscillators in the form of collective rhythmic behaviors. In this thesis, we present the results of two studies. For the first study, we choose a cyclic predator-prey system that shows a non-trivial space-time pattern. The system consists of six species each attacking three others, cyclically. By choosing such an interaction network, two competing domains form, while inside each domain three species play a rock-paper-scissors game. As a result of the inner competition, spirals form inside the domains. We study the response of the system to a perturbation. To perturb the system, we change the interaction scheme which leads to a change of alliances and therefore, a different spatial pattern. In the second study, we explore the patterns of clustering and synchronization in a system of repulsively coupled oscillators with non-homogeneous natural frequencies. Due to the negative coupling and the particular choice of geometry, some of the links between oscillators become frustrated. We use the parameters of the system such as the coupling constant and the width of the frequency distribution to understand the system’s attractor space. Further, we examine the effect of external noise on the system.

This thesis is devoted to a study of applications of gauged linear sigma models. First, by constructing (0,2) analogues of Hori-Vafa mirrors, we have given and checked proposals for (0,2) mirrors to projective spaces, toric del Pezzo and Hirzebruch surfaces with tangent bundle deformations, checking not only correlation functions but also e.g. that mirrors to del Pezzos are related by blowdowns in the fashion one would expect. Also, we applied the recent proposal for mirrors of non-Abelian (2,2) supersymmetric two-dimensional gauge theories to examples of two-dimensional A-twisted gauge theories with exceptional gauge groups G_2 and E_8. We explicitly computed the proposed mirror Landau-Ginzburg orbifold and derived the Coulomb ring relations (the analogue of quantum cohomology ring relations). We also studied pure gauge theories, and provided evidence (at the level of these topologicalfield-theory-type computations) that each pure gauge theory (with simply-connected gauge group) flows in the IR to a free theory of as many twisted chiral multiplets as the rank of the gauge group. Last, we have constructed hybrid Landau-Ginzburg models that RG flow to a new family of non-compact Calabi-Yau threefolds, constructed as fiber products of genus g curves and noncompact Kahler threefolds. We only considered curves given as branched double covers of P^1. Our construction utilizes nonperturbative constructions of the genus g curves, and so provides a new set of exotic UV theories that should RG flow to sigma models on Calabi-Yau manifolds, in which the Calabi-Yau is not realized simply as the critical locus of a superpotential. Doctor of Philosophy This thesis is devoted to a study of vacua of supersymmetric string theory (superstring theory) by gauged linear sigma models. String theory is best known as the candidate to unify Einstein’s general relativity and quantum field theory. We are interested in theories with a symmetry exchanging bosons and fermions, known as supersymmetry. The study of superstring vacua makes it possible to connect string theory to the real world, and describe the Standard model as a low energy effective theory. Gauged linear sigma models are one of the most successful models to study superstring vacua by, for example, providing insights into the global structure of their moduli spaces. We will use gauged linear sigma models to study mirror symmetry and its heterotic generalization “(0, 2) mirror symmetry.” They are both world-sheet dualities relating different interpretations of the same (internal) superstring vacua. Mirror symmetry is a very powerful duality which exchanges classical and quantum effects. By studying mirror symmetry and (0, 2) mirror symmetry, we gain more knowledge of the properties of superstring vacua.

Non-equilibrium systems have no set method of analysis, and a wide array of dynamics can be present in such systems. In this work we present three very different non-equilibrium models, inspired by biological systems and phenomena, that we analyze through computational means to showcase both the range of dynamics encompassed by these systems, as well as various techniques used to analyze them. The first system we model is a surface plasmon resonance (SPR) cell, a device used to determine the binding rates between various species of chemicals. We simulate the SPR cell and compare these computational results with a mean-field approximation, and find that such a simplification fails for a wide range of reaction rates that have been observed between different species of chemicals. Specifically, the mean-field approximation places limits on the possible resolution of the measured rates, and such an analysis fails to capture very fast dynamics between chemicals. The second system we analyzed is an avalanching neural network that models cascading neural activity seen in monkeys, rats, and humans. We used a model devised by Lombardi, Herrmann, de Arcangelis et al. to simulate this system and characterized its behavior as the fraction of inhibitory neurons was changed. At low fractions of inhibitory neurons we observed epileptic-like behavior in the system, as well as extended tails in the avalanche strength and duration distributions, which dominate the system in this regime. We also observed how the connectivity of these networks evolved under the effects of different inhibitory fractions, and found the high fractions of inhibitory neurons cause networks to evolve more sparsely, while networks with low fractions maintain their initial connectivity. We demonstrated two strategies to control the extreme avalanches present at low inhibitory fractions through either the random or targeted disabling of neurons. The final system we present is a sparsely encoding convolutional neural network, a computational system inspired by the human visual cortex that has been engineered to reconstruct images inputted into the network using a series of "patterns" learned from previous images as basis elements. The network attempts to do so "sparsely," so that the fewest number of neurons are used. Such systems are often used for denoising tasks, where noisy or fragmented images are reconstructed. We observed a minimum in this denoising error as the fraction of active neurons was varied, and observed the depth and location of this minimum to obey finite-size scaling laws that suggest the system is undergoing a second-order phase transition. We can use these finite-size scaling relations to further optimize this system by tuning it to the critical point for any given system size. Doctor of Philosophy Non-equilibrium systems have no set method of analysis, and a wide array of dynamics can be present in such systems. In this work we present three very different non-equilibrium models, inspired by biological systems and phenomena, that we analyze through computational means to showcase both the range of dynamics encompassed by these systems, as well as various techniques used to analyze them. The first system we model is a surface plasmon resonance (SPR) cell, a device used to determine the binding rates between various species of chemicals. We simulate the SPR cell and compare these computational results with a mean-field approximation, and find that such a simplification fails for a wide range of reaction rates that have been observed between different species of chemicals. Specifically, the mean-field approximation places limits on the possible resolution of the measured rates, and such an analysis fails to capture very fast dynamics between chemicals. The second system we analyzed is an avalanching neural network that models cascading neural activity seen in monkeys, rats, and humans. We used a model devised by Lombardi, Herrmann, de Arcangelis et al. to simulate this system and characterized its behavior as the fraction of inhibitory neurons was changed. At low fractions of inhibitory neurons we observed epileptic-like behavior in the system, as well as extended tails in the avalanche strength and duration distributions, which dominate the system in this regime. We also observed how the connectivity of these networks evolved under the effects of different inhibitory fractions, and found the high fractions of inhibitory neurons cause networks to evolve more sparsely, while networks with low fractions maintain their initial connectivity. We demonstrated two strategies to control the extreme avalanches present at low inhibitory fractions through either the random or targeted disabling of neurons. The final system we present is a sparsely encoding convolutional neural network, a computational system inspired by the human visual cortex that has been engineered to reconstruct images inputted into the network using a series of “patterns” learned from previous images as basis elements. The network attempts to do so “sparsely,” so that the fewest number of neurons are used. Such systems are often used for denoising tasks, where noisy or fragmented images are reconstructed. We observed a minimum in this denoising error as the fraction of active neurons was varied, and observed the depth and location of this minimum to obey finite-size scaling laws that suggest the system is undergoing a second-order phase transition. We can use these finite-size scaling relations to further optimize this system by tuning it to the critical point for any given system size.

A rich variety of phases can exist in quantum systems. For example, the fractional quantum Hall states have persistent topological characteristics that derive from strong interaction. This thesis uses the exact diagonalization method to investigate quantum lattice models with strong interaction. Our research topics revolve around quantum phase transitions between novel phases. The goal is to find the best schemes for realizing these novel phases in experiments. We studied the fractional Chern insulator and its transition to uni-directional stripes of particles. In addition, we studied topological Mott insulators with spontaneous time-reversal symmetry breaking induced by interaction. We also studied emergent kinetics in one-dimensional lattices with spin-orbital coupling. The exact diagonalization method and its implementation for studying these systems can easily be applied to study other strongly correlated systems. PHD Topological quantum states are a new type of quantum state that have properties that cannot be described by local order parameters. These types of states were first discovered in the 1980s with the integer quantum Hall effect and the fractional quantum Hall effect. In the 2000s, the predicted and experimentally discovered topological insulators triggered studies of new topological quantum states. Studies of strongly correlated systems have been a parallel research topic in condensed matter physics. When combining topological systems with strong correlation, the resulting systems can have novel properties that emerge, such as fractional charge. This thesis summarizes our work that uses the exact diagonalization method to study topological states with strong interaction.

Ultracold atoms in optical lattices offer an important tool for studying dynamics in many-body interacting systems in a pristine environment. This thesis focuses on three theoretical works motivated by recent optical lattice experiments. In the first, we theoretically study the center of mass dynamics of states derived from the disordered Bose-Hubbard model in a trapping potential. We find that the edge states in the trap allow center of mass motion even with insulating states in the center. We identify short and long-time mechanisms for edge state transport in insulating phases. We also argue that the center of mass velocity can aid in identifying a Bose-glass phase. Our zero temperature results offer important insights into mechanisms of transport of atoms in trapped optical lattices while putting bounds on center of mass dynamics expected at non-zero temperature. In the second work, we study the domain wall expansion dynamics of strongly interacting bosons in 2D optical lattices with disorder in a recent experiment {[}J.-y. Choi et al., Science 352, 1547 (2016)]. We show that Gutzwiller mean-field theory (GMFT) captures the main experimental observations, which are a result of the competition between disorder and interactions. Our findings highlight the difficulty in distinguishing glassy dynamics, which can be captured by GMFT, and many-body localization, which cannot be captured by GMFT, and indicate the need for further experimental studies of this system. The last work features our study of phase diagrams of the 2D Bose-Hubbard model in an optical lattice with synthetic spin-orbit coupling. We investigate the transitions between superfluids with different phase patterns, which may be detected by measuring the spin-dependent momentum distribution. Ph. D. Ultracold atoms in optical lattices, a periodic potential generated by laser beams, offer an important tool for quantum simulations in a pristine environment. Motivated by recent optical lattice experiments with the implementation of disorder and synthetic spin-orbit coupling, we utilize Gutzwiller mean-field theory (GMFT) to study the dynamics of disordered state in an optical lattice under the sudden shift of the harmonic trap, the domain wall expansion of strongly interacting bosons in 2D lattices with disorder, and spin-orbit-driven transitions in the Bose-Hubbard model. We argue that the center of mass velocity can aid in identifying a Bose-glass phase. Our findings show that evidence for many-body localization claimed in experiments [J.-y. Choi et al., Science 352, 1547 (2016)] must lie in the differences between GMFT and experiments. We also find that strong spin-orbit coupling alone can generate superfluids with finite momentum and staggered phase patterns.

Moore and Shannon's reliability polynomial can be used as a global statistic to explore the behavior of diffusive processes on a graph dynamical system representing a finite sized interacting system. It depends on both the network topology and the dynamics of the process and gives the probability that the system has a particular desired property. Due to the complexity involved in evaluating the exact network reliability, the problem has been classified as a NP-hard problem. The estimation of the reliability polynomials for large graphs is feasible using Monte Carlo simulations. However, the number of samples required for an accurate estimate increases with system size. Instead, an adaptive method using Bernstein polynomials as kernel density estimators proves useful. Network reliability has a wide range of applications ranging from epidemiology to statistical physics, depending on the description of the functionality. For example, it serves as a measure to study the sensitivity of the outbreak of an infectious disease on a network to the structure of the network. It can also be used to identify important dynamics-induced contagion clusters in international food trade networks. Further, it is analogous to the partition function of the Ising model which provides insights to the interpolation between the low and high temperature limits. Ph. D. The research presented here explores the effects of the structural properties of an interacting system on the outcomes of a diffusive process using Moore-Shannon network reliability. The network reliability is a finite degree polynomial which provides the probability of observing a certain configuration for a diffusive process on networks. Examples of such processes analyzed here are outbreak of an epidemic in a population, spread of an invasive species through international trade of commodities and spread of a perturbation in a physical system with discrete magnetic spins. Network reliability is a novel tool which can be used to compare the efficiency of network models with the observed data, to find important components of the system as well as to estimate the functions of thermodynamic state variables.

We numerically investigate the dynamical properties of driven magnetic flux vortices in disordered type-II superconductors for a variety of temperatures, types of disorder and sample thicknesses. We do so with the aid of Langevin molecular dynamics simulations of a coarsegrained elastic line model of flux vortices in the extreme London limit. Some original findings of this doctoral work include the discovery that flux vortices driven through random point disorder show simple aging following drive quenches from the moving lattice state to both the pinned glassy state (non-universal aging) and near the critical depinning region (universal aging); estimations of experimentally consistent critical scaling exponents for the continuous depinning phase transition of vortices in three dimensions; and an estimation of the boundary curve separating regions of linear and non-linear electrical transport for flux lines driven through planar defects via novel direct measurements of vortex excitations. Ph. D. The works contained in this dissertation were undertaken with the goal of better understanding the dynamics of driven magnetic flux lines in type-II superconductors under different conditions of temperature, material defects and sample thickness. The investigations were conducted with the aid of computer simulations of the flux lines which preserve physical aspects of the system relevant to long-time dynamics while discarding irrelevant microscopic details. As a result of this work, we found (among other things) that when driven by electric currents, flux lines display very different dynamics depending on the strength of the current. When the current is weak, the material defects strongly pin the flux lines leaving them in a disordered glassy state. Sufficiently high current overpowers the defect pinning and results in the flux lines forming into a highly ordered crystal-like structure. In the intermediate critical current regime, the competing forces become comparable resulting in very large fluctuations of the flux lines and a critical slowing down of the flux line dynamics.

In a stochastic Lotka-Volterra model on a two-dimensional square lattice with periodic boundary conditions and subject to occupation restrictions, there exists an extinction threshold for the predator population that separates a stable active two-species coexistence phase from an inactive state wherein only prey survive. When investigating the non-equilibrium relaxation of the predator density in the vicinity of the phase transition point, we observe critical slowing-down and algebraic decay of the predator density at the extinction critical point. The numerically determined critical exponents are in accord with the established values of the directed percolation universality class. Following a sudden predation rate change to its critical value, one finds critical aging for the predator density autocorrelation function that is also governed by universal scaling exponents. This aging scaling signature of the active-to-absorbing state phase transition emerges at significantly earlier times than the stationary critical power laws, and could thus serve as an advanced indicator of the (predator) population's proximity to its extinction threshold. In order to study boundary effects, we split the system into two patches: Upon setting the predation rates at two distinct values, one half of the system resides in an absorbing state where only the prey survives, while the other half attains a stable coexistence state wherein both species remain active. At the domain boundary, we observe a marked enhancement of the predator population density, the minimum value of the correlation length, and the maximum attenuation rate. Boundary effects become less prominent as the system is successively divided into subdomains in a checkerboard pattern, with two different reaction rates assigned to neighboring patches. We furthermore add another predator species into the system with the purpose of studying possible origins of biodiversity. Predators are characterized with individual predation efficiencies and death rates, to which "Darwinian" evolutionary adaptation is introduced. We find that direct competition between predator species and character displacement together play an important role in yielding stable communities. We develop another variant of the lattice predator-prey model to help understand the killer- prey relationship of two different types of E. coli in a biological experiment, wherein the prey colonies disperse all over the plate while the killer cell population resides at the center, and a "kill zone" of prey forms immediately surrounding the killer, beyond which the prey population gradually increases outward. Ph. D.

The Qweak experiment has precisely determined the weak charge of the proton Qp w by measuring the parity-violating asymmetry in elastic electron-proton scattering at a low momentum transfer of Q2 = 0.0249 (GeV/c)2 . Qpw has a definite prediction in the Standard Model, and a value of sin2 θW can be extracted from it for comparison with other neutral current observables. Qweak measured the weak charge of the proton to be Qpw(P V ES) = 0.0719 ± 0.0045, which is consistent with the Standard Model value of Qp w(SM) = 0.0708 ± 0.0003. Qweak ran at the Thomas Jefferson National Accelerator Facility for two and a half years and was installed in experimental Hall C. A 180µA beam of longitudinally polarized electrons at 1.16 GeV scattered off a liquid hydrogen target of unpolarized protons. The electrons were collimated to an acceptance of 5.8◦ to 11.6◦ and then passed through a magnetic spectrometer and onto quartz Čerenkov detector bars. A detailed description of the theory and motivation behind the Qweak experiment is given. An overview of the Qweak apparatus and an in-depth discussion of the luminosity monitor performance is presented. A general overview of the Qweak analysis is also presented, with a focus on the beamline background correction, the nonlinearity measurement, and the simulation to constrain error for a rescattering effect. Also detailed here is the final, unblinded Qweak result, which determined Qpw to 6.2% and provided the highest precision measurement of sin2θW at low energy. PHD

This thesis is devoted to a discussion of two-dimensional theories with (0,2) supersymmetry. Examples of two-dimensional (0,2) gauged linear sigma models (GLSMs) are constructed for various spaces including Grassmannians, complete intersections in Grassmannians, and non-complete intersections such as Pfaffians. Generalizations of (2,2) Toda dual theories to (0,2) Toda-like theories are also discussed and some examples are given, including products of projective spaces and del Pezzo surfaces. Correlation functions are computed to show the examples are the correct mirror models. Ph. D.

This thesis is devoted to a thorough study of chiral rings in two-dimensional (0,2) theories. We first discuss properties of chiral operators in general two-dimensional (0,2) nonlinear sigma models, both in theories twistable to the A/2 or B/2 model, as well as in non-twistable theories. As a special case, we study the quantum sheaf cohomology of Grassmannians as a deformation of the usual quantum cohomology. The deformation corresponds to a (0,2) deformation of the nonabelian gauged linear sigma model whose geometric phase is associated with the Grassmannian. Combined with the classical result, the quantum ring structure is derived from the one-loop effective potential. Supersymmetric localization is also applicable in this case, which proves to be efficient in computing A/2 correlation functions. We then compute chiral operators in general (0,2) nonlinear sigma models, and apply them to the Gadde-Gukov-Putrov triality proposal, which says that certain triples of (0,2) GLSMs should RG flow to nontrivial IR fixed points. As another application, we extend previous works to construct (0,2) Toda-like mirrors to the sigma model engineering Grassmannians. Ph. D.

The neutrino is, by its nature, an elusive particle that requires massive detectors with small backgrounds to capture a handful of events. Nevertheless, neutrino experiments stand at the heart of the current mysteries of particle physics and astrophysics. These include the origin and size of neutrino mass, the existence of additional types of neutrinos, CP violation and the matter--antimatter asymmetry, the amount of metals in the Sun's core, and the existence of non-nuclear energy sources in the Sun. This dissertation concerns the the use of a novel detector technology, the Raghavan Optical Lattice (ROL), in the Low-Energy Neutrino Spectrometer (LENS) and Neutrino Lattice (NuLat) experiments. LENS will measure the solar neutrino luminosity and the Sun's core metallicity using a ROL with indium-loaded liquid scintillator. NuLat will probe the existence of light sterile neutrinos with masses of $ \sim 1\,\mathrm{eV} $ using a ROL made from $ ^{6}\mathrm{Li} $-loaded plastic scintillator. For LENS we present an overview of the experiment and the present the ROL construction results from the LENS R\andD program. In particular we will present results from the micro- and mini-LENS prototypes. For both LENS and NuLat we present the development of an event reconstruction algorithm for ROLs and we apply these to the expected signals for these experiments. For NuLat we present an overview of the experiment including its theory of operation and its sensitivity to sterile neutrino oscillations. Finally, we present work toward the full-sized NuLat detector through bench-top tests and construction of the NuLat demonstrator. Ph. D.

Quasar outflows are a major candidate for Active Galactic Nuclei (AGN) feedback, and their capacity to influence the evolution of their host galaxy depends on the mass-flow rate (M) and kinetic luminosity (E) of the outflowing material. Both quantities require measurement of the distance (R) to the outflow from the central source as well as physical conditions of the outflow, which can be determined using spectral observations of the quasar. This thesis presents spectral analyses leading to measurements of R, M and E for three different quasar outflows. Analysis of LBQS J1206+1052 revealed multiple diagnostic spectral features that could each be used to independently determine R. These diagnostics yielded measurements that were in close agreement, resulting in a robust outflow distance of 840 pc from the central source. This measurement is much larger than predicted from radiative acceleration models (~0.01-0.1 pc), suggesting that outflows appear much farther from the central source than is generally assumed. The outflow in SDSS J0831+0354 was found to carry a kinetic luminosity of 1045.7 erg/s, which corresponds to 5.2 per cent of the Eddington luminosity of the quasar. This outflow is one of the most energetic outflows to date and satisfies the criteria required to produce AGN feedback effects. A variability study of NGC 5548 revealed an obscuring cloud of gas that shielded the outflow components, dramatically lowering their ionization state. This resulted in the appearance of absorption from the rare element Phosphorus, as well as from sparsely-populated energy levels of CIII and SiIII. These spectral features allowed for an accurate determination of R and for constraints on the ionization phase to be obtained. The latter constraints were used to develop a self-consistent model that explained the variability of all six outflow components during five observing epochs spanning 16 years. Ph. D.

We investigate the relaxation properties of two distinct systems: magnetic vortex lines in disordered type-II superconductors and charge carriers in the Coulomb glass in disordered semiconductors. We utilize an elastic line model to simulate magnetic flux lines in disordered type-II superconductors by performing Langevin molecular dynamics simulations. We study the non-equilibrium relaxation properties of flux lines in the presence of uncorrelated point-like disorder or extended linear defects analyzing the effects of rapid changes in the system's temperature or magnetic field on these properties. In a previously-equilibrated system, either the temperature is suddenly changed or the magnetic field is abruptly altered by adding or removing random flux lines to or from the system. One-time observables such as the radius of gyration are measured to characterize steady-state properties, and two-time correlation functions such as the vortex line height autocorrelations are computed to investigate the relaxation dynamics in the aging regime and therefore distinguish the complex relaxation features that result from the different types of disorder in the system. This study allows us to test the sensitivity of the system's non-equilibrium aging kinetics to the selection of initial states and to make closer contact to experimental setups. Furthermore, we employ Monte Carlo simulations to study the relaxation properties of the two-dimensional Coulomb glass in disordered semiconductors and the two-dimensional Bose glass in type-II superconductors in the presence of extended linear defects. We investigate the effects of adding non-zero random on-site energies from different distributions on the properties of the correlation-induced Coulomb gap in the density of states and on the non-equilibrium aging kinetics highlighted by the autocorrelation functions. We also probe the sensitivity of the system's equilibrium and non-equilibrium relaxation properties to instantaneous changes in the density of charge carriers in the Coulomb glass or flux lines in the Bose glass. Ph. D.

Decays of B mesons to three-body charmless final states probe the properties of the weak interaction through their dependence on the complex quark couplings in the CKM matrix. They also test dynamical models for hadronic B decays. Based on a sample of 772 million BB pairs collected by the Belle experiment, we present a study of direct CP violation in the decay of charged B to three charged pions. Ph. D.

In this work, the antineutrino spectrum as specifically generated by nuclear reactors is studied. The topics covered include corrections and higher-order effects in reactor antineutrino experiments, one of which is covered in Ref. [1] and another contributes to Ref. [2]. In addition, a practical application, antineutrino safeguards for nuclear reactors, as summarized in Ref. [3,4] and Ref. [5], is explored to determine its viability and limits. The work will focus heavily on theory, simulation, and statistical analyses to explain the corrections, their origins, and their sizes, as well as the applications of the antineutrino signal from nuclear reactors. Chapter [1] serves as an introduction to neutrinos. Their origin is briefly covered, along with neutrino properties and some experimental highlights. The next chapter, Chapter [2], will specifically cover antineutrinos as generated in nuclear reactors. In this chapter, the production and detection methods of reactor neutrinos are introduced as well as a discussion of the theories behind determining the antineutrino spectrum. The mathematical formulation of neutrino oscillation will also be introduced and explained. The first half of this work focuses on two corrections to the reactor antineutrino spectrum. These corrections are generated from two specific sources and are thus named the spent nuclear fuel contribution and the non-linear correction for their respective sources. Chapter [3] contains a discussion of the spent fuel contribution. This correction arises from spent nuclear fuel near the reactor site and involves a detailed application of spent fuel to current reactor antineutrino experiments. Chapter [4] will focus on the non-linear correction, which is caused by neutron-captures within the nuclear reactor environment. Its quantification and impact on future antineutrino experiments are discussed. The research projects presented in the second half, Chapter [5], focus on neutrino applications, specifically reactor monitoring. Chapter [5] is a comprehensive examination of the use of antineutrinos as a reactor safeguards mechanism. This chapter will include the theory behind safeguards, the statistical derivation of power and plutonium measurements, the details of reactor simulations, and the future outlook for non-proliferation through antineutrino monitoring. Ph. D.

The mean field analysis of stochastic dynamical system allows us to gain insight into the qualitative features of their complex behavior, as well as quantitative estimates of certain aspects of their coarse-grained properties. As such, it usually furnishes a first front in approaching new dynamical systems and informs us about their stability landscape in the absence of fluctuations among other things. A knowledge of this landscape can be a valuable tool in model building for describing real world systems and provides a guiding principle for a justifiable choice of form and model parameters. In this work, we contribute to this analysis for two generic classes of high-dimensional models that possess a cyclic symmetry in the network that specifies their stochastic dynamics at the microscopic level. Our analysis is carried out in a manner that can be readily adapted for the mean field analysis of further generalized models that possess this symmetry. Moreover, in the second class of these models, we propose a new basic process that can change the stability landscape of an existing model and, as such, endow us with potential alternatives to model systems with robust biodiverse regimes. Ph. D.

This thesis presents work done investigating methods for constructing patterns on the nanometer scale. Various methods of nanolithography using atomic force microscopes (AFMs) are investigated. The use of AFMs beyond their imaging capabilities is demonstrated in various experiments involving nanografting and surface electrochemical modification. The use of an AFM to manipulate a monolayer of thiols deposited on a gold substrate via nanografting is shown in our work to enable chemical modification of the surface of the substrate by varying the composition of the monolayer deposited on it. This leads to the selective deposition of various polymers on the patterned areas. Conditions for enhancing the selective deposition of the self-assembled polymers are studied. Such conditions include the types of polymers used and the pH of the polyelectrolyte solutions used for polymer deposition. Another method of nanolithography is investigated which involves the electrochemical modification of a monolayer of silanes deposited on a silicon substrate. By applying a potential difference and maintaining the humidity of the ambient environment at a certain level we manage to change the chemical properties of select areas of the silane monolayer and thus manage to establish selective deposition of polymers and gold nanoparticles on the patterned areas. Parameters involved in the patterning process using surface electrochemical modification, such as humidity levels, are investigated. The techniques established are then used to construct circuit elements such as wires. Ph. D.

The Daya Bay experiment has determined the last unknown mixing angle $theta_{13}$. This thesis describes the layout of the experiment and the detector design. The analysis presented in the thesis covered the water attenuation, spent fuel neutrino and electron anti-neutrino spectrum. Other physics analysis and impact to future experiments are also discussed. Ph. D.

Neutrino physics has entered a precision era in which understanding backgrounds and systematic uncertainties is particularly important. With a precise understanding of neutrino physics, we can better understand neutrino sources. In this work, we demonstrate dependency of single detector oscillation experiments on reactor neutrino flux model. We fit the largest reactor neutrino flux model error, weak magnetism, using data from experiments. We use reactor burn-up simulations in combination with a reactor neutrino flux model to demonstrate the capability of a neutrino detector to measure the power, burn-up, and plutonium content of a nuclear reactor. In particular, North Korean reactors are examined prior to the 1994 nuclear crisis and waste removal detection is examined at the Iranian reactor. The strength of a neutrino detector is that it can acquire data without the need to shut the reactor down. We also simulate tau neutrino interactions to determine backgrounds to muon neutrino and electron neutrino measurements in neutrino factory experiments. Ph. D.

Modeling the Cosmic Muon Flux is very important for quantifying the backgrounds present for underground experiments. We measure the flux at various locations in the Kimballton Underground Research Facility (KURF) and compare these measurements with our model. Ph. D.