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Dietary studies in birds of prey involve direct observation and examination of food remains at resting and nesting sites. Although these methods accurately identify diet in raptors, they are time-consuming, resource-intensive, and associated with biases from the feeding ecology of raptors like Gyps vultures. Our study set out to estimate diet composition in Gyps vultures informed by stable isotopes that provide a good representation of assimilated diet from local systems.\ud We hypothesized that differences in Gyps vulture diet composition is a function of sampling location and that these vultures move between Serengeti National Park and Selous Game Reserve to forage. We also theorized that grazing ungulates are the principal items in Gyps vulture diet.\ud Through combined linear and Bayesian modeling, diet derived from δ13C in Gyps vultures consisted of grazing herbivores across sites, with those in Serengeti National Park consuming higher proportions of grazing herbivores (>87%). δ13C differences in vulture feather subsets did not indicate shifts in vulture diet and combined with blood δ13C, vultures fed largely on grazers for ~159 days before they were sampled. Similarly, δ15N values indicated Gyps vultures fed largely on herbivores. δ34S ratios separated where vultures fed when the two sites were compared. δ34S variation in vultures across sites resulted from baseline differences in plant δ34S values, though it is not possible to match δ34S to specific locations.\ud Our findings highlight the relevance of repeated sampling that considers tissues with varying isotopic turnover and emerging Bayesian techniques for dietary studies using stable isotopes. Findings also suggested limited vulture movement between the two local systems. However, more sampling coupled with environmental data is required to fully comprehend this observation and its implications to Gyps vulture ecology and conservation.

We present the isotopic discrimination between paired skin and bone collagen from animals of known life history, providing a modern baseline for the interpretation of archaeological isotopic data. At present, the interpretation of inter-tissue variation (Δ(skin–bone)) in mummified remains is based on comparisons with other archaeological material, which have attributed divergence to their contrasting turnover rates, with rapidly remodelling skin collagen incorporating alterations in environmental, cultural and physiological conditions in the months prior to death. While plausible, the lack of baseline data from individuals with known life histories has hindered evaluation of the explanations presented. Our analysis of a range of animals raised under a variety of management practices showed a population-wide trend for skin collagen to be depleted in 13C by –0.7‰ and enriched in 15N by +1.0‰ relative to bone collagen, even in stillborn animals. These results are intriguing and difficult to explain using current knowledge; however, on the basis of the findings reported here, we caution any results which interpret simply on differing turnover rates. We hypothesize that there may be a consistent difference in the routing of dietary protein and lipids between skin and bone, with potentially on-site synthesis of non-essential amino acids using carbon and nitrogen that have been sourced via different biochemical pathways.

Rationale? \ud The study of insect migration is problematic due to the small size of insects. Stable isotope analysis can be used to elucidate movement, either by geographic assignment of location of a species, or by simply distinguishing migrant from resident populations. There are few isoscapes of any kind in the UK/Ireland available for interrogation. Thus, I have measured stable isotope ratios (of H, C, N and S) of 299 individuals of the non-migratory Brimstone moth (Opisthograptis luteolata) collected from 93 locations around the UK and Ireland by citizen scientists.\ud \ud Methods: \ud After removing lipids, stable isotope ratios were measured by continuous flow isotope ratio mass spectrometry, using either a conventional elemental analyser (C, N and S) or a high temperature, thermal conversion elemental analyser in reductive mode.\ud \ud Results: \ud Maps (isoscapes) were constructed that illustrate the stable isotope spatial distribution of this insect. These are the first isoscapes of H, C, N and S of biological samples covering both UK and Ireland.\ud \ud Conclusions: \ud The insect isoscape patterns can be explained from what we know of moth diet, climate and geology. Sulfur isotopes may be of particular use for distinguishing individuals from areas of unique geology. Isoscape patterns may (with care) predict isotope compositions of other, herbivorous, non-aquatic, chitinous taxa. Such isoscapes, when extended beyond the UK and Ireland, would provide a useful tool to elucidate insect migration.

Figure S1: a) Skin of SH12, a five-year-old Shetland Ewe who was in poor health prior to death. Note the large patch across the trunk where the wool has fallen off ante-mortem. b) Skin of SH12. Close up of the wool-less area. c) Skin of SH03, a six-month-old Shetland Ram who was in poor health prior to death. Despite this, the fleece and skin were in very good condition, comparable to those of healthy sheep. d) Skin of SH03. As with the hair-side, the flesh-side was in very good condition. e) Skin of SH13, a twenty-four day old Shetland Ram who died of unknown natural causes. Unlike SH12, this sheep had a thick fleece despite its young age. The hairless patches are the armpits and groin. f) Skin of SH28, a twenty-month old Leicester Longwool who was in good health prior to death. Here the wool has been removed post-mortem to reveal the uniform surface of the skin, typical of healthy sheep.

No abstract available.

Additional file 1. Summary of sampling sites and result outputs.

Additional file 1 Appendix 1. Questionnaires. List of questions asked to cattle owners for exploring movement history of cattle. Appendix 2: Summary statistics and model selection table. Appendix 3: Grass sulfur isotopes across the Serengeti ecosystem. Laboratory results for δ34S data used to interpolate the isoscape. Appendix 4: Distance in Km moved by cattle as per questionnaire report. Distance is the straight-line measure between two points.

The 3H concentration and stable isotope ratio of hydrogen and oxygen, δ2H and δ18O, of waters extracted from a Sphagnum-dominant raised bog in Lyngmossen, Sweden, were measured in order to understand where the precipitation is retained and how mobile it is. Three types of waters, which were defined by extractability, were collected from the peat. Two waters were extracted by compressing samples with different pressures (SQW1 and SQW2). The other water was obtained by distilling the compressed samples (DW). 3H was detected in all types of water from depths of 0–50 cm: the concentrations in SQW1, SQW2 and DW ranged 1.17–3.07 Bq/L, 0.98–2.03 Bq/L, and 1.02–1.54 Bq/L, respectively. The maximum 3H concentrations of SQW1, SQW2 and DW were all detected at a depth of around 15 cm, whose 14C age covers the year of the atomic bomb experiments. The 3H results of SQW1/2 indicate that SQW consists of at least two waters of different mobility, water flowing rapidly downward and immobile water. Sphagnum hyaline cells may be responsible for the immobile water.\ud \ud The δ18O and δ2H relationship exhibited independent trends between SQW and DW. The distinct difference observed between the two waters at the surface (0–5 cm) indicates that the two waters may be supplied by precipitation at different times of the year, or alternatively that DW comprises plant water taken in from hyaline cells. The δ18O and δ2H values of both SQW and DW in the shallow layer increased with increasing depth, and in the layer around 30 cm depth, those of SQW showed a distinct decrease with depth. Isotope fractionation caused by evaporation and/or plant utilization of water at the surface layer are considered to be the main causes of such isotopic variation at the surface. Evaporation is likely to take place in much drier conditions for DW than for SQW, probably through stems by capillary action. In SQW freezing may be a possible cause for the decrease of δ18O and δ2H around 30 cm depth. DW is isotopically very well separated from two SQW1/2.\ud \ud Integrating all isotopic information, we conclude the presence of three different waters: least mobile water at shallow depth perhaps in hyaline cells, which can be extracted by squeezing peat with low pressure; most mobile water in a deeper layer than 30 cm, extracted also by squeezing peat; mobile but least extractable water, which is likely water inside plant tissues.

RATIONALE:\ud We describe an analytical procedure that allows sample collection and measurement of carbon isotopic composition (δ13CV-PDB value) and dissolved inorganic carbon concentration, [DIC], in aqueous samples without further manipulation post field collection. By comparing outputs from two different mass spectrometers, we quantify with the statistical rigour uncertainty associated with the estimation of an unknown measurement. This is rarely undertaken, but it is needed to understand the significance of field data and to interpret quality assurance exercises.\ud \ud METHODS:\ud Immediate acidification of field samples during collection in evacuated, pre-acidified vials removed the need for toxic chemicals to inhibit continued bacterial activity that might compromise isotopic and concentration measurements. Aqueous standards mimicked the sample matrix and avoided headspace fractionation corrections. Samples were analysed using continuous-flow isotope-ratio mass spectrometry, but for low DIC concentration the mass spectrometer response could be non-linear. This had to be corrected for.\ud \ud RESULTS:\ud Mass spectrometer non-linearity exists. Rather than estimating precision as the repeat analysis of an internal standard, we have adopted inverse linear calibrations to quantify the precision and 95% confidence intervals (CI) of the δ13CDIC values. The response for [DIC] estimation was always linear. For 0.05–0.5 mM DIC internal standards, however, changes in mass spectrometer linearity resulted in estimations of the precision in the δ13CVPDB value of an unknown ranging from ± 0.44‰ to ± 1.33‰ (mean values) and a mean 95% CI half-width of ±1.1–3.1‰.\ud \ud CONCLUSIONS:\ud Mass spectrometer non-linearity should be considered in estimating uncertainty in measurement. Similarly, statistically robust estimates of precision and accuracy should also be adopted. Such estimations do not inhibit research advances: our consideration of small-scale spatial variability at two points on a small order river system demonstrates field data ranges larger than the precision and uncertainties. However, without such statistical quantification, exercises such as inter-lab calibrations are less meaningful.

Background An understanding of year-round habitat use is essential for determining how carry-over effects shape population dynamics in long-distance migratory songbirds. The recent discovery of long-term migratory staging sites in many species, prior to arrival at final wintering sites, adds complexity to efforts to decipher non-breeding habitat use and connections between sites. We investigated whether habitat conditions during migratory staging carry over to influence great reed warbler (Acrocephalus arundinaceus) body condition at final wintering sites in Zambia. We asked whether the presence/absence and strength of such carry-over effects were modified by contrasting rainfall conditions during 2 years. Results First, we found that individuals staging in a dry year had higher corticosterone (CORTf) and stable nitrogen isotope values (suggesting higher aridity) than birds staging in a wet year, indicating that regional weather affected staging conditions. Second, we found that carry-over effects from staging habitat conditions (measured via carbon and nitrogen isotopes) to final winter site body condition (measured via scaled mass index and β-hydroxybutyrate) were only present in a dry year, suggesting that environmental factors have consequences for the strength of carry-over effects. Our results also suggest that wet conditions at final winter sites may buffer the effects of poor staging conditions, at least in the short term, since individuals that staged in a dry year had higher scaled mass indices in Zambia than individuals that staged in a wet year. Conclusions This study provides a first insight into the connections between long-term migratory staging sites and final wintering sites, and suggests that local environmental factors can modify the strength of carry-over effects for long-distance migratory birds. Electronic supplementary material The online version of this article (doi:10.1186/s12898-016-0096-6) contains supplementary material, which is available to authorized users.

Trophic assimilation efficiency (conversion of resource biomass into consumer biomass) is thought to be a limiting factor for food chain length in natural communities. In host–parasitoid systems, which account for the majority of terrestrial consumer interactions, a high trophic assimilation efficiency may be expected at higher trophic levels because of the close match of resource composition of host tissue and the consumer's resource requirements, which would allow for longer food chains. We measured efficiency of biomass transfer along an aphid-primary–secondary–tertiary parasitoid food chain and used stable isotope analysis to confirm trophic levels. We show high efficiency in biomass transfer along the food chain. From the third to the fourth trophic level, the proportion of host biomass transferred was 45%, 65% and 73%, respectively, for three secondary parasitoid species. For two parasitoid species that can act at the fourth and fifth trophic levels, we show markedly increased trophic assimilation efficiencies at the higher trophic level, which increased from 45 to 63% and 73 to 93%, respectively. In common with other food chains, δ15N increased with trophic level, with trophic discrimination factors (Δ15N) 1.34 and 1.49‰ from primary parasitoids to endoparasitic and ectoparasitic secondary parasitoids, respectively, and 0.78‰ from secondary to tertiary parasitoids. Owing to the extraordinarily high efficiency of hyperparasitoids, cryptic higher trophic levels may exist in host–parasitoid communities, which could alter our understanding of the dynamics and drivers of community structure of these important systems.

Ecomorphological differentiation is a key feature of adaptive radiations, with a general trend for specialisation and niche expansion following divergence. Ecological opportunity afforded by invasion of a new habitat is thought to act as an ecological release, facilitating divergence and speciation. Here, we investigate trophic adaptive morphology and ecology of an endemic clade of oreochromine cichlid fishes (Alcolapia) that radiated along a herbivorous trophic axis following colonisation of an isolated lacustrine environment, and demonstrate phenotype-environment correlation. Ecological and morphological divergence of the Alcolapia species flock are examined in a phylogenomic context, to infer ecological niche occupation within the radiation. Species divergence is observed in both ecology and morphology, supporting the importance of ecological speciation within the radiation. Comparison with an outgroup taxon reveals large-scale ecomorphological divergence but shallow genomic differentiation within the Alcolapia adaptive radiation. Ancestral morphological reconstruction suggests lake colonisation by a generalist oreochromine phenotype that diverged in Lake Natron to varied herbivorous morphologies akin to specialist herbivores in Lakes Tanganyika and Malawi.

Many established models of animal foraging assume that individuals are ecologically equivalent. However, it is increasingly recognized that populations may comprise individuals who differ consistently in their diets and foraging behaviors. For example, recent studies have shown that individual foraging site fidelity (IFSF, when individuals consistently forage in only a small part of their population's home range) occurs in some colonial breeders. Short-term IFSF could result from animals using a win–stay, lose–shift foraging strategy. Alternatively, it may be a consequence of individual specialization. Pelagic seabirds are colonial central-place foragers, classically assumed to use flexible foraging strategies to target widely dispersed, spatiotemporally patchy prey. However, tracking has shown that IFSF occurs in many seabirds, although it is not known whether this persists across years. To test for long-term IFSF and to examine alternative hypotheses concerning its cause, we repeatedly tracked 55 Northern Gannets (Morus bassanus) from a large colony in the North Sea within and across three successive breeding seasons. Gannets foraged in neritic waters, predictably structured by tidal mixing and thermal stratification, but subject to stochastic, wind-induced overturning. Both within and across years, coarse to mesoscale (tens of kilometers) IFSF was significant but not absolute, and foraging birds departed the colony in individually consistent directions. Carbon stable isotope ratios in gannet blood tissues were repeatable within years and nitrogen ratios were also repeatable across years, suggesting long-term individual dietary specialization. Individuals were also consistent across years in habitat use with respect to relative sea surface temperature and in some dive metrics, yet none of these factors accounted for IFSF. Moreover, at the scale of weeks, IFSF did not decay over time and the magnitude of IFSF across years was similar to that within years, suggesting that IFSF is not primarily the result of win–stay, lose–shift foraging. Rather, we hypothesize that site familiarity, accrued early in life, causes IFSF by canalizing subsequent foraging decisions. Evidence from this and other studies suggests that IFSF may be common in colonial central-place foragers, with far-reaching consequences for our attempts to understand and conserve these animals in a rapidly changing environment.

Evasion of carbon dioxide (CO2) from fluvial systems is now recognized as a significant component of the global carbon cycle. However the magnitude of, and controls on, this flux remain uncertain and improved understanding of both are required to refine global estimates of fluvial CO2 efflux. CO2 efflux data show no pattern with latitude suggesting that catchment biological productivity is not a primary control and that an alternative explanation for inter-site variability is required. It has been suggested that increased flow velocity and turbulence enhance CO2 efflux, but this is not confirmed. Here, using contemporaneous measurements of efflux (range: 0.07 – 107 µmol CO2 m-2 s-1), flow hydraulics (mean velocity range: 0.03 – 1.39 m s-1) and pCO2 (range: 174 – 10712 µatm) at six sites, we find that flow intensity is a primary control on efflux across two climatically different locations (where pH is not a limiting factor) and that the relationship is refined by incorporating the partial pressure of CO2 (pCO2) of the water. A remaining challenge is how to upscale from point to reach or river basin level. Remote imaging or river surface may be worth exploring if subjectivity in interpreting surface state can be overcome.

RATIONALE A variety of metabolic, dietary and climatic influences on isotopic variation have been established in mammalian hair. The relevance of these factors to collagen isotopic composition is unknown, but would be of great interest to zooarchaeological analyses of faunal skeletal tissue. METHODS The relationships between carbon (δ13C), nitrogen (δ15N), non-exchangeable hydrogen (δ2H) and oxygen (δ18O) values of defatted, demineralised and gelatinised bone collagen and defatted wool keratin from two sheep flocks (n = 20, 5) in the UK were investigated, including testing for the effects of nutritional plane, sex, pregnancy and season of sample collection. The sulfur composition (δ34S values) was also investigated for tissues from the smaller flock. RESULTS Bulk collagen was enriched in 13C over bulk keratin by 2.0 - 2.7‰ and in 2H by 29 - 40‰ but depleted in 18O relative to keratin by 1.8‰. Differences in δ15N values were within experimental error. The collagen samples were generally more enriched in 34S than keratin, but this was very variable. Pregnancy, sex and season, but not nutritional plane, significantly affected isotope values but did not change overall keratin-collagen relationships. CONCLUSIONS This dataset provides a baseline measure of variability and comparability for isotopic investigations into origin and husbandry conditions in archaeological sheep tissues, both collagen and keratin.

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VCU Theses and Dissertations

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1. Millions of shorebirds migrate each year through a small number of highly productive staging areas where they often conflict with fisheries interests. Delaware Bay, USA, is a major shorebird stopover site where, in spring, many thousands of shorebirds undergo rapid mass gain by feeding on the eggs of commercially harvested horseshoe crabs Limulus polyphemus. 2. Environmental factors may cause deviations from the best migration schedule. We used within-year mass gain data from red knot Calidris canutus caught in Delaware Bay between 1998 and 2005 to determine the degree of flexibility individuals have to vary migration speed. 3. Mass gain by birds below 133 g was shown to comprise 15.3% fat (39 kJ g(-1)), the remainder being lean mass (6 kJ g(-1)). Above this critical level, fat comprised 83.9% of mass deposition. The rates of energy deposition (kJ d(-1)) were therefore fundamentally different between the two states but were among the highest ever recorded among vertebrates (5-7 x basic metabolic rate). 4. A total of 36-62% of the variation in observed rates of energy deposition between 1998 and 2002 was explained by a year factor, date and mass at initial capture and interaction terms, such that light-weight birds at the end of May had rates of mass gain or energy deposition two to three times higher than birds of similar mass in mid-May, indicating that birds were attempting to achieve a certain mass by a certain date. In 2003 and 2005, this relationship broke down as a result of lower densities of eggs. 5. Synthesis and application. The maintenance of high densities of crab eggs required for high rates of mass gain in red knot requires severe cuts in, or the complete cessation of, the crab harvest, reduced human and raptor-related disturbance as well as management of beaches to provide sufficient crab-spawning habitat. These findings are widely applicable to other systems where harvesting activities come into conflict with migrating animals and show that certain sections of the population, in this case the long-distance migrants from South America, will be impacted more than short-distance migrants whose physiology may give them access to altto alternative food resources.

We present the isotopic discrimination between paired skin and bone collagen from animals of known life history, providing a modern baseline for the interpretation of archaeological isotopic data. At present, the interpretation of inter-tissue variation (Δ (skin–bone) ) in mummified remains is based on comparisons with other archaeological material, which have attributed divergence to their contrasting turnover rates, with rapidly remodelling skin collagen incorporating alterations in environmental, cultural and physiological conditions in the months prior to death. While plausible, the lack of baseline data from individuals with known life histories has hindered evaluation of the explanations presented. Our analysis of a range of animals raised under a variety of management practices showed a population-wide trend for skin collagen to be depleted in 13 C by –0.7‰ and enriched in 15 N by +1.0‰ relative to bone collagen, even in stillborn animals. These results are intriguing and difficult to explain using current knowledge; however, on the basis of the findings reported here, we caution any results which interpret simply on differing turnover rates. We hypothesize that there may be a consistent difference in the routing of dietary protein and lipids between skin and bone, with potentially on-site synthesis of non-essential amino acids using carbon and nitrogen that have been sourced via different biochemical pathways.