18 results on '"Murray S. A. Thompson"'
Search Results
2. Evidence for the effects of decommissioning man-made structures on marine ecosystems globally: a systematic map
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Anaëlle J. Lemasson, Paul J. Somerfield, Michaela Schratzberger, Caroline Louise McNeill, Joana Nunes, Christine Pascoe, Stephen C. L. Watson, Murray S. A. Thompson, Elena Couce, and Antony M. Knights
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Ecology ,Management, Monitoring, Policy and Law ,Pollution - Abstract
Background Many marine man-made structures (MMS), such as oil and gas platforms or offshore wind turbines, are nearing their ‘end-of-life’ and require decommissioning. Limited understanding of MMS decommissioning effects currently restricts the consideration of alternative management possibilities, often leaving complete removal as the only option in certain parts of the world. This evidence-base describes the ecosystem effects of marine MMS whilst in place and following cessation of operations, with a view to informing decision-making related to their potential decommissioning. Method The protocol used to create this map was published a priori. Systematic searches of published, literature in English were conducted using three bibliographic databases, ten specialist organisational websites or repositories, and one search engine, up to early 2021. A total of 15,697 unique articles were identified as potentially relevant to our research questions, of which 2,230 were screened at the full-text level. Of that subset, 860 articles met all pre-defined eligibility criteria. A further 119 articles were identified through “snowballing” of references from literature reviews. The final database consists of 979 articles. For each article included, metadata were extracted for key variables of interest and coded into a database. Review findings The vast majority of eligible articles related to the presence of MMS (96.2%), while just 5.8% considered decommissioning. Overall, articles mainly considered artificial reefs (51.5% of all articles) but increasingly oil and gas (22%), shipwrecks (15.1%) and offshore wind (13.1%). Studies were distributed globally, but the majority focused on the United States, single countries within Europe, Australia, Brazil, China, and Israel; 25 studies spanned multiple countries. Consequently, the bulk of the studies focused on the North Atlantic (incl. Gulf of Mexico, North Sea, and Mediterranean Sea) and North Pacific Oceans. A further 12 studies had a global scope. Studies in majority reported on fish (53%) and invertebrates (41%), and were disproportionately focused on biological (81%) and ecological (48%) impacts. Physico-chemical (13%), habitat (7%), socio-cultural (7%), economic (4%) and functional (8%) outcomes have received less attention. The number of decommissioning studies has been increasing since ca. 2012 but remains noticeably low. Studies mostly focus on oil and gas infrastructures in the USA (Gulf of Mexico) and Northern Europe (North Sea), covering 9 different decommissioning options. Conclusions This systematic map, the first of its kind, reveals a substantial body of peer-reviewed evidence relating to the presence of MMS in the sea and their impacts, but with considerable bias toward biological and ecological outcomes over abiotic and socio-economic outcomes. The map reveals extremely limited direct evidence of decommissioning effects, likely driven at least in part by international policy preventing consideration of a range of decommissioning options beyond complete removal. Despite evidence of MMS impacts continuing to grow exponentially since the early 1970s, this map reveals key gaps in evidence to support best practice in developing decommissioning options that consider environmental, social and economic effects. Relevant evidence is required to generate greater understanding in those areas and ensure decommissioning options deliver optimal ecosystem outcomes.
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- 2022
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3. A feeding guild indicator to assess environmental change impacts on marine ecosystem structure and functioning
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Simon P. R. Greenstreet, John K. Pinnegar, Pierre Hélaouët, Meadhbh Moriarty, Christopher P. Lynam, Hugo Pontalier, Michael Spence, and Murray S. A. Thompson
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Marine Strategy Framework Directive ,Geography ,Ecology ,Environmental change ,Good Environmental Status ,Guild ,media_common.cataloged_instance ,Marine ecosystem ,European union ,Food web ,Trophic level ,media_common - Abstract
Integrating food web indicators into ecological status assessments is central to developing effective management measures that can improve degraded ecosystems. This is because they can reveal how ecosystems respond to environmental change that cannot be inferred from studying habitat, species or assemblages alone. However, the substantial investment required to monitor food webs (e.g. via stomach contents analysis) and the lack of internationally agreed approaches to assessing them has hampered their development. Inventories of trophic interactions have been collated world-wide and across biomes, and can be applied to infer food web structure and energy flow. Here, we compile a new marine dataset containing 8,092 unique predator-prey interactions from 415,294 fish stomachs. We demonstrate how feeding guilds (i.e. groupings based on diet and life stage) could be defined systematically and in a way that is conducive to their application internationally across ecosystems; and apply them to the North Sea fish assemblage to demonstrate their responsiveness to anthropogenic pressures. We found evidence for seven distinct feeding guilds. Differences between guilds were related to predator size, which positively correlated with piscivory, phylogeny, with multiple size classes of a species often in the same guild, and habitat, as pelagic, benthic and shallow-coastal foraging was apparent. Guild biomasses were largely consistent through time at the North Sea-level and spatially aggregated at the regional level with change relating to changes in resource availability, temperature, fishing and the biomass of other guilds. This suggests that fish biomass was partitioned across broad feeding and environmental niches, and changes over time were governed partly by guild carrying capacities, but also by a combination of covariates with contrasting patterns of change. Management of the North Sea ecosystem could therefore be adaptive and focused towards specific guilds and pressures in a given area. Synthesis and applications. We propose a food web indicator which has been explicitly called for to inform policy via food web status assessment as part of the European Union's Marine Strategy Framework Directive and the indicator toolkit supporting The Convention for the Protection of the Marine Environment of the North-East Atlantic (the 'OSPAR Convention').
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- 2020
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4. A simple model predicts how warming simplifies wild food webs
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Katy J. Faulkner, Jón S. Ólafsson, Joana Neto-Cerejeira, Owen L. Petchey, Doris E. Pichler, Murray S. A. Thompson, Guy Woodward, Bruno Gallo, Timothy A. C. Gordon, Eoin J. O'Gorman, University of Zurich, and O’Gorman, Eoin J
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Ecological stability ,Extinction ,UFSP13-8 Global Change and Biodiversity ,Ecology ,Aquatic ecosystem ,3301 Social Sciences (miscellaneous) ,2301 Environmental Science (miscellaneous) ,Environmental Science (miscellaneous) ,Food web ,Ecological network ,10127 Institute of Evolutionary Biology and Environmental Studies ,Abundance (ecology) ,570 Life sciences ,biology ,590 Animals (Zoology) ,Environmental science ,Ecosystem ,Ecosystem ecology ,Social Sciences (miscellaneous) - Abstract
Warming increases the metabolic demand of consumers1, strengthening their feeding interactions2. This could alter energy fluxes3–5 and even amplify extinction rates within the food web6–8. Such effects could simplify the structure and dynamics of ecological networks9,10, although an empirical test in natural systems has been lacking. Here, we tested this hypothesis by characterizing around 50,000 directly observed feeding interactions across 14 naturally heated stream ecosystems11–15. We found that higher temperature simplified food-web structure and shortened the pathways of energy flux between consumers and resources. A simple allometric diet breadth model10,16 predicted 68–82% of feeding interactions and the effects of warming on key food-web properties. We used model simulations to identify the underlying mechanism as a change in the relative diversity and abundance of consumers and their resources. This model shows how warming can reduce the stability of aquatic ecosystems by eroding the structural integrity of the food web. Given these fundamental drivers, such responses are expected to be manifested more broadly and could be predicted using our modelling framework and knowledge of how warming alters some routinely measured characteristics of organisms. Observations of feeding interactions show that warming simplifies the structure of food webs in stream ecosystems. Simulations show that consumer diversity and changes in abundance drive this simplification and can reduce ecosystem stability.
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- 2019
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5. Systematic variation in food web body-size structure linked to external subsidies
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Katrin Layer-Dobra, Julia Reiss, Isabelle Durance, J. Iwan Jones, Daniel M. Perkins, Guy Woodward, Rasmus B. Lauridsen, Michelle C. Jackson, and Murray S. A. Thompson
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0106 biological sciences ,0303 health sciences ,Food Chain ,Ecology ,Fishes ,Community structure ,Biology ,Generalist and specialist species ,Invertebrates ,010603 evolutionary biology ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,Food web ,03 medical and health sciences ,Rivers ,Community Ecology ,Abundance (ecology) ,Energy flow ,Animals ,Body Size ,Allometry ,General Agricultural and Biological Sciences ,Scaling ,030304 developmental biology ,Trophic level - Abstract
The relationship between body mass (M) and size class abundance (N) depicts patterns of community structure and energy flow through food webs. While the general assumption is that M and N scale linearly (on log–log axes), nonlinearity is regularly observed in natural systems, and is theorized to be driven by nonlinear scaling of trophic level (TL) with M resulting in the rapid transfer of energy to consumers in certain size classes. We tested this hypothesis with data from 31 stream food webs. We predicted that allochthonous subsidies higher in the web results in nonlinear M–TL relationships and systematic abundance peaks in macroinvertebrate and fish size classes (latter containing salmonids), that exploit terrestrial plant material and terrestrial invertebrates, respectively. Indeed, both M–N and M–TL significantly deviated from linear relationships and the observed curvature in M–TL scaling was inversely related to that observed in M–N relationships. Systemic peaks in M–N, and troughs in M–TL occurred in size classes dominated by generalist invertebrates, and brown trout. Our study reveals how allochthonous resources entering high in the web systematically shape community size structure and demonstrates the relevance of a generalized metabolic scaling model for understanding patterns of energy transfer in energetically ‘open’ food webs.
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- 2021
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6. Evidence for the effects of decommissioning man-made structures on marine ecosystems globally: a systematic map protocol
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Murray S. A. Thompson, Gennadi Lessin, Louise C. McNeill, Nicola Beaumont, Ana M. Queirós, Paul J. Somerfield, Antony M. Knights, Christine Pascoe, Michaela Schratzberger, and Anaëlle J. Lemasson
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0106 biological sciences ,Computer science ,Forest management ,Oil and gas ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,01 natural sciences ,Nuclear decommissioning ,Ecosystem services ,Synthesis ,Order (exchange) ,North sea ,Marine ecosystem ,Offshore wind ,Marine renewable energy ,lcsh:Environmental sciences ,MAP protocol ,0105 earth and related environmental sciences ,lcsh:GE1-350 ,Ecology ,business.industry ,010604 marine biology & hydrobiology ,Environmental resource management ,Pollution ,Offshore wind power ,restrict ,business ,Repurposing - Abstract
Background Numerous man-made structures (MMS) have been installed in various parts of the ocean (e.g. oil and gas structures, offshore wind installations). Many are now at, or nearing, the end of their intended life. Currently, we only have a limited understanding of decommissioning effects. In many locations, such as the North Sea, regulations restrict decommissioning options to complete removal, with little consideration of alternative management options might offer. To generate a reliable evidence-base to inform the decision-making processes pertaining to marine MMS management, we propose a wide-encompassing systematic map of published research on the ecosystem effects (including ecosystem services) of marine MMS while in place and following cessation of operations (i.e. including effects of alternative decommissioning options). This map is undertaken as part of the UKRI DREAMS project which aims to develop a system to show the relative effects of implementing different decommissioning strategies in the North Sea. Method For the purpose of this map, we will keep our focus global, in order to subsequently draw comparisons between marine regions. The proposed map will aim to answer the following two primary questions: 1. What published evidence exists for the effects of marine man-made structures while in place on the marine ecosystem? 2. What published evidence exists for the effects of the decommissioning of marine man-made structures on the marine ecosystem? The map will follow the Collaboration for Environmental Evidence Guidelines and Standards for Evidence Synthesis in Environmental Management. Searches will be run primarily in English in at least 13 databases and 4 websites. Returns will be screened at title/abstract level and at full-text against pre-defined criteria. Relevant meta-data will be extracted for each study included. Results will be used to build a database of evidence, which will be made freely available. This map, expected to be large, will improve our knowledge of the available evidence for the ecosystem effects of MMS in the global marine environment. It will subsequently inform the production of multiple systematic-reviews and meta-analyses.
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- 2021
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7. What’s hot and what’s not: making sense of biodiversity ‘hotspots’
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Michaela Schratzberger, Thomas J. Webb, Elena Couce, Keith M. Cooper, Miriam Grace, and Murray S. A. Thompson
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0106 biological sciences ,Conservation of Natural Resources ,biodiversity hotspot ,010504 meteorology & atmospheric sciences ,Biodiversity ,Random Forest analysis ,010603 evolutionary biology ,01 natural sciences ,Benthos ,Environmental Chemistry ,Primary Research Article ,Ecosystem ,species richness ,rarefaction and extrapolation ,0105 earth and related environmental sciences ,General Environmental Science ,marine benthic fauna ,Global and Planetary Change ,Ecology ,business.industry ,Environmental resource management ,conservation ,Primary Research Articles ,Biodiversity hotspot ,Geography ,Benthic zone ,diversity partitioning ,Species richness ,Scale (map) ,business ,Diversity (business) - Abstract
Conserving biogeographic regions with especially high biodiversity, known as biodiversity ‘hotspots’, is intuitive because finite resources can be focussed towards manageable units. Yet, biodiversity, environmental conditions and their relationship are more complex with multidimensional properties. Assessments which ignore this risk failing to detect change, identify its direction or gauge the scale of appropriate intervention. Conflicting concepts which assume assemblages as either sharply delineated communities or loosely collected species have also hampered progress in the way we assess and conserve biodiversity. We focus on the marine benthos where delineating manageable areas for conservation is an attractive prospect because it holds most marine species and constitutes the largest single ecosystem on earth by area. Using two large UK marine benthic faunal datasets, we present a spatially gridded data sampling design to account for survey effects which would otherwise be the principal drivers of diversity estimates. We then assess γ‐diversity (regional richness) with diversity partitioned between α (local richness) and β (dissimilarity), and their change in relation to covariates to test whether defining and conserving biodiversity hotspots is an effective conservation strategy in light of the prevailing forces structuring those assemblages. α‐, β‐ and γ‐diversity hotspots were largely inconsistent with each metric relating uniquely to the covariates, and loosely collected species generally prevailed with relatively few distinct assemblages. Hotspots could therefore be an unreliable means to direct conservation efforts if based on only a component part of diversity. When assessed alongside environmental gradients, α‐, β‐ and γ‐diversity provide a multidimensional but still intuitive perspective of biodiversity change that can direct conservation towards key drivers and the appropriate scale for intervention. Our study also highlights possible temporal declines in species richness over 30 years and thus the need for future integrated monitoring to reveal the causal drivers of biodiversity change., Conserving biodiversity ‘hotspots’ is intuitive because finite resources can be focussed towards manageable units. Yet, biodiversity, environmental conditions and their relationship are more complex with multidimensional properties. Assessments which ignore this risk failing to detect change, identify its direction, or gauge the scale of appropriate intervention. We focus on the marine benthos which holds most marine species and constitutes the largest single ecosystem on earth by area. When assessed alongside environmental gradients, α‐, β‐ and γ‐diversity provide a multidimensional but still intuitive perspective of biodiversity change that can direct conservation towards key drivers and the appropriate scale for intervention. Photographs used are a combination of © Elena Couce and © Crown Copyright, the latter collected by Cefas, Cornwall IFCA and Environment Agency whilst undertaking survey work in partnerships with the JNCC and Natural England.
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- 2021
8. Bending the rules: exploitation of allochthonous resources by a top‐predator modifies size‐abundance scaling in stream food webs
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Katrin Layer-Dobra, Jonathan Grey, Guy Woodward, Rasmus B. Lauridsen, Daniel M. Perkins, Alan G. Hildrew, J. Iwan Jones, Isabelle Durance, Murray S. A. Thompson, Michelle C. Jackson, Francois Edwards, and Natural Environment Research Council (NERC)
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TERRESTRIAL ,0106 biological sciences ,Food Chain ,stable isotopes ,Environmental Sciences & Ecology ,STREAMS ,Body size ,metabolic theory ,010603 evolutionary biology ,01 natural sciences ,Ecology and Environment ,Predation ,Rivers ,Animals ,Dominance (ecology) ,Allometric scaling ,Scaling ,POPULATION ,Ecosystem ,Ecology, Evolution, Behavior and Systematics ,Apex predator ,UNIVERSAL ,Science & Technology ,Ecology ,BROWN TROUT ,0602 Ecology ,Fishes ,Community structure ,streams ,010601 ecology ,0501 Ecological Applications ,BODY MASS RELATIONSHIPS ,food webs ,SALMO-TRUTTA ,energetic subsidies ,Environmental science ,Allometry ,body size ,Life Sciences & Biomedicine - Abstract
Body mass–abundance (M‐N) allometries provide a key measure of community structure, and deviations from scaling predictions could reveal how cross‐ecosystem subsidies alter food webs. For 31 streams across the UK, we tested the hypothesis that linear log‐log M‐N scaling is shallower than that predicted by allometric scaling theory when top predators have access to allochthonous prey. These streams all contained a common and widespread top predator (brown trout) that regularly feeds on terrestrial prey and, as hypothesised, deviations from predicted scaling increased with its dominance of the fish assemblage. Our study identifies a key beneficiary of cross‐ecosystem subsidies at the top of stream food webs and elucidates how these inputs can reshape the size‐structure of these ‘open’ systems.
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- 2018
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9. Large woody debris 'rewilding' rapidly restores biodiversity in riverine food webs
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Daniel M. Perkins, Murray S. A. Thompson, Carl D. Sayer, Jan C. Axmacher, Guy Woodward, Clare Gray, and Stephen J. Brooks
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0106 biological sciences ,Biomass (ecology) ,Ecology ,010604 marine biology & hydrobiology ,Biodiversity ,Large woody debris ,010603 evolutionary biology ,01 natural sciences ,Food web ,Habitat destruction ,Environmental science ,Ecosystem ,Restoration ecology ,Apex predator - Abstract
Extensive habitat destruction and pollution have caused dramatic declines in aquatic biodiversity at local to global scales. In rivers, the reintroduction of large woody debris is a common method aimed at restoring degraded ecosystems through "rewilding." However, causal evidence for its effectiveness is lacking due to a dearth of replicated before-after control-impact field experiments. We conducted the first replicated experiment of large woody debris rewilding across multiple rivers and organisational levels, from individual target species populations to entire food webs. For the first time, we demonstrate causal links between habitat restoration, biodiversity restoration and food web responses. Populations of invertebrates and an apex predator, brown trout (Salmo trutta), increased, and food web analysis suggested increased biomass flux from basal resources to invertebrates and subsequently fishes within restored reaches. Synthesis and applications. This study contributes significant new evidence demonstrating that large woody debris rewilding can help to restore human-impacted river ecosystems, primarily through altering the abundance and biomass of consumers and resources in the food web. We also outline a means to gauge the magnitude of ecological responses to restoration, relative to environmental stressors, which could help to prioritise the most effective conservation efforts.
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- 2017
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10. Citizen science: from detecting pollution to evaluating ecological restoration
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Murray S. A. Thompson, Joseph E. A. Huddart, Stephen J. Brooks, and Guy Woodward
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0106 biological sciences ,Protocol (science) ,Ecology ,Computer science ,business.industry ,010604 marine biology & hydrobiology ,Corporate governance ,Environmental resource management ,Ocean Engineering ,Management, Monitoring, Policy and Law ,Aquatic Science ,Oceanography ,010603 evolutionary biology ,01 natural sciences ,Data quality ,Scale (social sciences) ,Citizen science ,Water quality ,business ,Constraint (mathematics) ,Restoration ecology ,Water Science and Technology - Abstract
The proliferation of citizen science water quality monitoring networks suggests there is potential for developing an equivalent river Restoration Assessment Initiative (RAI). This is currently lacking, especially at larger (e.g., national and international) scales. As such, the RAI would provide a much-needed new tool for stakeholders to evaluate and compare the efficacy of their restoration efforts. We propose a standardized protocol to quantify biotic responses (e.g., changes to the macroinvertebrate community) to restoration efforts, which would facilitate a large-scale, open-access database revealing success or failure of commonly used restoration techniques. By combining biotic and abiotic (e.g., habitat and water quality) assessments, a feature typically lacking from restoration monitoring schemes and cited as a major constraint limiting development of the field, integrative approaches (e.g., meta-analyses and coordinated field experiments) could help untangle their respective effects on restoration outcomes. Water quality initiatives (e.g., the Riverfly Monitoring Initiative) have paved the way for volunteer-driven pollution monitoring, and provide models designed for sustaining long-lasting volunteer participation in stream monitoring. These could be developed for the RAI to better detect restoration signals (e.g., adopt a before-after-control-impact (BACI) approach) while continuing to address the key practical challenges associated with implementing citizen science initiatives (e.g., volunteer skills and data quality assurance). Once established, the resultant infrastructure would facilitate expansion to an international scale, increasing the statistical power of the combined database enormously and allowing the addition of novel measures (e.g., ecosystem process rates) for assessing restoration. Clearly citizen scientists need a role in restoration assessment, especially as they are becoming increasingly important drivers of practices on the ground. Developing a coordinated citizen science RAI to ensure data are standardized and disseminated effectively will advance restoration on a more global scale, and also provides a timely solution to keep society and science connected. WIREs Water 2016, 3:287–300. doi: 10.1002/wat2.1138 This article is categorized under: Water and Life > Conservation, Management, and Awareness Human Water > Water Governance Science of Water > Water Quality
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- 2016
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11. Comparing biotic drivers of litter breakdown across streams compartments
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Daniel M. Perkins, Ignacio Peralta-Maraver, Anne L. Robertson, Julia Reiss, Katarina E. Fussmann, and Murray S. A. Thompson
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0106 biological sciences ,litter breakdown ,010603 evolutionary biology ,01 natural sciences ,multivariable mediation models ,Benthos ,Rivers ,hyporheos ,Hyporheic zone ,Animals ,Ecosystem ,Biomass ,Ecology, Evolution, Behavior and Systematics ,Biomass (ecology) ,Ecology ,010604 marine biology & hydrobiology ,Community structure ,benthos ,Biota ,15. Life on land ,Invertebrates ,streambed ecology ,Plant Leaves ,nutrients processing ,Community Ecology ,13. Climate action ,Benthic zone ,Litter ,Environmental science ,Animal Science and Zoology ,Research Article - Abstract
Litter breakdown in the streambed is an important pathway in organic carbon cycling and energy transfer in the biosphere that is mediated by a wide range of streambed organisms. However, most research on litter breakdown to date has focused on a small fraction of the taxa that drive it (e.g. microbial vs. macroinvertebrate‐mediated breakdown) and has been limited to the benthic zone (BZ). Despite the importance of the hyporheic zone (HZ) as a bioreactor, little is known about what, or who, mediates litter breakdown in this compartment and whether breakdown rates differ between the BZ and HZ.Here, we explore the relationship between litter breakdown and the variation in community structure of benthic and hyporheic communities by deploying two standardized bioassays (cotton strips and two types of commercially available tea bags) in 30 UK streams that encompass a range of environmental conditions. Then, we modelled these assays as a response of the streambed compartment and the biological features of the streambed assemblage (Prokaryota, Protozoa and Eumetazoa invertebrates) to understand the generality and efficiency of litter processing across communities.Litter breakdown was much faster in the BZ compared with the HZ (around 5 times higher for cotton strips and 1.5 times faster for the tea leaves). However, differences in litter breakdown between the BZ and the HZ were mediated by the biological features of the benthos and the hyporheos. Biomass of all the studied biotic groups, α‐diversity of Eumetazoa invertebrates and metabolic diversity of Prokaryota were important predictors that were positively related to breakdown coefficients demonstrating their importance in the functioning of the streambed ecosystem.Our study uses a novel multimetric bioassay that is able to disentangle the contribution by Prokaryota, Protozoa and Eumetazoa invertebrates to litter breakdown. In doing so, our study reveals new insights into how organic matter decomposition is partitioned across biota and streambed compartments., The authors use a novel multimetric bioassay that is able to disentangle the contribution by Prokaryota, Protozoa and eumetazoan invertebrates to litter breakdown. The study reveals new insights into how organic matter breakdown is partitioned across biota and streambed compartments.
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- 2019
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12. Predator traits determine food-web architecture across ecosystems
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Ulrich Brose, Shaopeng Wang, David Ott, Evie A. Wieters, Muriel M. MacPherson, Johanna Häussler, Daniel M. Perkins, Katarina E. Fussmann, Esra H. Sohlström, Orla McLaughlin, Phillippe Archambault, Ivan Pokrovsky, Ross M. Thompson, Erminia Conti, Neo D. Martinez, Andrew D. Barnes, Björn C. Rall, Sonia Kéfi, Malte Jochum, Benoit Gauzens, Catarina Vinagre, Myriam R. Hirt, Denise A. Piechnik, Ana C. F. Silva, Christoph Digel, Pierre Legagneux, Murray S. A. Thompson, João Canning-Clode, Yuanheng Li, Ellen Latz, Fanny Vermandele, Clare Gray, Benjamin Rosenbaum, Eoin J. O'Gorman, Carolina Madeira, Natalia Sokolova, Awantha Dissanayake, Sergio A. Navarrete, Augusto A. V. Flores, Katrin Layer-Dobra, José Realino de Paula, Ute Jacob, Marta Dias, Alison C. Iles, Jori M. Wefer, Christian Mulder, Louis-Félix Bersier, Vanessa Mendonça, Guy Woodward, Thomas Boy, Richard J. Williams, Remo Ryser, David Raffaelli, Natural Environment Research Council (NERC), German Centre for Integrative Biodiversity Research, Institut des Sciences de la MER de Rimouski (ISMER), Université du Québec à Rimouski (UQAR), School of Biological Sciences [Brisbane], University of Queensland [Brisbane], Unit of Ecology and Evolution, Albert-Ludwigs-Universität Freiburg, Smithonian Environmental Research Center, Research Center, Dep. Quimica (CFMC-UL), Instituto Technologico e Nucléar, Plymouth University, Department of Biology, Institute for Hydrobiology and Fisheries Science, Center for Earth System Research and Sustainability (CEN), University of Hamburg, Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut Laue-Langevin (ILL), ILL, National Institute for Public Health and the Environment [Bilthoven] (RIVM), Pontificia Universidad Católica de Chile (UC), Centre de Recherche et d'Appui pour la Formation et ses Technologies (CRAFT), Ecole Polytechnique Fédérale de Lausanne (EPFL), University of Minho [Braga], Institute for Applied Ecology, University of Canberra, NERC Centre for Ecology and Hydrology, School of Biological and Chemical Sciences, Queen Mary University of London (QMUL), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Institut National de la Recherche Agronomique (INRA)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), École pratique des hautes études (EPHE), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226
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0106 biological sciences ,ECOLOGIA MARINHA ,Food Chain ,Ecology (disciplines) ,Biodiversity ,Environmental Sciences & Ecology ,DIMENSIONALITY ,Biology ,010603 evolutionary biology ,01 natural sciences ,Predation ,Animals ,Body Size ,Ecosystem ,Predator ,Ecology, Evolution, Behavior and Systematics ,SCALE ,PREY BODY-SIZE ,Evolutionary Biology ,Science & Technology ,Ecology ,STABILITY ,010604 marine biology & hydrobiology ,CONSTRAINTS ,15. Life on land ,Food web ,Predatory Behavior ,Vertebrates ,Terrestrial ecosystem ,BIODIVERSITY ,Allometry ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Life Sciences & Biomedicine - Abstract
International audience; Predator-prey interactions in natural ecosystems generate complex food webs that have a simple universal body-size architecture where predators are systematically larger than their prey. Food-web theory shows that the highest predator-prey body-mass ratios found in natural food webs may be especially important as they create weak interactions with slow dynamics that stabilize communities against perturbations and maintain ecosystem functioning. Identifying these vital interactions in real communities typically requires arduous identification of interactions in complex food webs. Here, we overcome this obstacle by developing predator-trait models to predict average body-mass ratios based on a database comprising 290 food webs from freshwater, marine and terrestrial ecosystems across all continents. We analyzed how species traits constrain body-size architecture by changing the slope of the predator-prey body-mass scaling. Across ecosystems, we found high body-mass ratios for predator groups with specific trait combinations including (1) small vertebrates and (2) large swimming or flying predators. Including the metabolic and movement types of predators increased the accuracy of predicting which species are engaged in high body-mass ratio interactions. We demonstrate that species traits explain striking patterns in the body-size architecture of natural food webs that underpin the stability and functioning of ecosystems, paving the way for community-level management of the most complex natural ecosystems.
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- 2019
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13. Cheddar: analysis and visualisation of ecological communities in R
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Daniel C. Reuman, Murray S. A. Thompson, Eoin J. O'Gorman, Rob Emerson, Katrin Layer, Guy Woodward, Lawrence N. Hudson, Mark E. Ledger, Gareth B. Jenkins, and Doris E. Pichler
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Structure (mathematical logic) ,Ecology ,business.industry ,Ecological Modeling ,Biology ,Ecological network ,Visualization ,Food chain ,Range (mathematics) ,Software ,business ,Implementation ,Ecology, Evolution, Behavior and Systematics ,Bespoke - Abstract
Summary 1. There has been a lack of software available to ecologists for the management, visualisation and analysis of ecological community and food web data. Researchers have been forced to implement their own data formats and software, often from scratch, resulting in duplicated effort and bespoke solutions that are difficult to apply to future analyses and comparative studies. 2. We introduce Cheddar – an R package that provides standard, transparent implementations of a wide range of food web and community-level analyses and plots, focussing on ecological network data that are augmented with estimates of body mass and/or numerical abundance. 3. The package allows analysis of individual communities, as well as collections of communities, allowing examination of changes in structure through time, across environmental gradients, or due to experimental manipulations. Several commonly analysed food web data sets are included and used in worked examples. 4. This is the first time these important features have been combined in a single package that helps improve research efficiency and serves as a unified framework for future development.
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- 2012
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14. Gene-to-ecosystem impacts of a catastrophic pesticide spill: testing a multilevel bioassessment approach in a river ecosystem
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Boyd A. McKew, Alex J. Dumbrell, Carl D. Sayer, Mark Trimmer, Claire Bankier, Guy Woodward, Mark E. Ledger, Murray S. A. Thompson, Thomas Bell, Clare Gray, Felicity Shelley, Scott L. Warren, Katja Lehmann, and Natural Environment Research Council (NERC)
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0106 biological sciences ,Biomass (ecology) ,education.field_of_study ,Ecology ,Population ,05 Environmental Sciences ,010501 environmental sciences ,Aquatic Science ,Biology ,06 Biological Sciences ,01 natural sciences ,Freshwater ecosystem ,Food web ,Marine Biology & Hydrobiology ,010601 ecology ,Food chain ,Ecosystem ,education ,0105 earth and related environmental sciences ,Trophic level ,Apex predator - Abstract
1. Pesticides can have strong deleterious impacts in fresh waters, but understanding how these effects cascade through natural ecosystems, from microbes to apex predators, is limited because research that spans multiple levels of biological organisation is rare. 2. We report how an accidental insecticide spill altered the structure and functioning of a river across levels ranging from genes to ecosystems. We quantified the impacts on assemblages of microbes, diatoms, macroinvertebrates and fish and measured leaf-litter decomposition rates and microbial functional potential at upstream control and downstream impacted sites 2 months after the spill. 3. Both direct and indirect impacts were evident across multiple levels of organisation and taxa, from the base of the food web to higher trophic levels. At the molecular level, differences in functional gene abundance within the impacted sites reflected a combination of direct and indirect effects of the pesticide, via elevated abundances of microbial populations capable of using chlorpyrifos as a resource (i.e. direct effect) and oxidising ammonia released by decaying macroinvertebrate carcasses (i.e. indirect effect). 4. At the base of the food chains, diatom taxa found only in the impacted sites were an order-of- magnitude larger in cell size than the largest comparable taxa in control communities, following the near extirpation of their consumers. Population biomass of the key detritivore Gammarus pulex was markedly lower, as was the rate of litter decomposition in the impacted sites. This was partially compensated for, however, by elevated microbial breakdown, suggesting another indirect food-web effect of the toxic spill. 5. Although many species exhibited population crashes or local extirpation, total macroinvertebrate biomass and abundance were largely unaffected due to a compensatory elevation in small tolerant taxa such as oligochaetes, and/or taxa which were in their adult aerial life stage at the time of the spill (e.g. chironomids) and thus avoided contact with the polluted waters and were able to repopu- late the river quickly. Mass–abundance scaling of trophic links between consumers and resources revealed extensive restructuring within the food web. 6. This case study shows that pesticides can affect food-web structure and ecosystem functioning, both directly and indirectly across levels of biological organisation. It also demonstrates how an integrated assessment approach, as adopted here, can elucidate links between microbiota, macroinvertebrates and fish, for instance, thus improving our understanding of the range of biological consequences of chemical contamination in natural ecosystems.
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- 2015
15. Impacts of Warming on the Structure and Functioning of Aquatic Communities
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Daniel C. Reuman, Murray S. A. Thompson, Jonathan P. Benstead, Haley Cohen, Anssi Laurila, Marco Plebani, Magnus Johansson, J. Russell Manson, Nikolai Friberg, Liselotte S. Johansson, Georgina L. Adams, Jón S. Ólafsson, Rakel Gudmundsdottir, Wyatt F. Cross, Björn C. Rall, Gísli Már Gíslason, Daniel Nelson, James M. Hood, Rebecca Stewart, Adrianna Hawczak, Benoît O. L. Demars, Doris E. Pichler, Lawrence N. Hudson, James R. Junker, Owen L. Petchey, Efpraxia Mavromati, Guy Woodward, Nicola Craig, Daniel M. Perkins, and Eoin J. O'Gorman
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0106 biological sciences ,education.field_of_study ,River ecosystem ,Community ,Ecology ,Population ,15. Life on land ,010603 evolutionary biology ,01 natural sciences ,Food web ,010601 ecology ,Food chain ,13. Climate action ,Environmental science ,Ecosystem ,14. Life underwater ,Ecosystem respiration ,education ,Apex predator - Abstract
Environmental warming is predicted to rise dramatically over the next century, yet few studies have investigated its effects in natural, multi-species systems. We present data collated over an 8-year period from a catchment of geothermally heated streams in Iceland, which acts as a natural experiment on the effects of warming across different organisational levels and spatiotemporal scales. Body sizes and population biomasses of individual species responded strongly to temperature, with some providing evidence to support temperature size rules. Macroinvertebrate and meiofaunal community composition also changed dramatically across the thermal gradient. Interactions within the warm streams in particular were characterised by food chains linking algae to snails to the apex predator, brown trout These chains were missing from the colder systems, where snails were replaced by much smaller herbivores and invertebrate omnivores were the top predators. Trout were also subsidised by terrestrial invertebrate prey, which could have an effect analogous to apparent competition within the aquatic prey assemblage. Top-down effects by snails on diatoms were stronger in the warmer streams, which could account for a shallowing of mass-abundance slopes across the community. This may indicate reduced energy transfer efficiency from resources to consumers in the warmer systems and/or a change in predator-prey mass ratios. All the ecosystem process rates investigated increased with temperature, but with differing thermal sensitivities, with important implications for overall ecosystem functioning (e.g. creating potential imbalances in elemental fluxes). Ecosystem respiration rose rapidly with temperature, leading to increased heterotrophy. There were also indications that food web stability may be lower in the warmer streams.
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- 2012
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16. Ecological Networks in a Changing Climate
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F. J. Frank van Veen, Gabriel Yvon-Durocher, Doris E. Pichler, Oliver S. Beveridge, Jens M. Olesen, Wyatt F. Cross, Ute Jacob, Daniel C. Reuman, Thomas Brey, Simon Jennings, Julia L. Blanchard, Thomas C. Ings, Alexander M. Milner, Guy Woodward, Owen L. Petchey, Lee E. Brown, Murray S. A. Thompson, Jonathan P. Benstead, Eoin J. O'Gorman, Mark E. Ledger, José M. Montoya, and Nikolai Friberg
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0106 biological sciences ,Environmental change ,Aqueous medium ,business.industry ,Ecology ,010604 marine biology & hydrobiology ,Environmental resource management ,Climate change ,Context (language use) ,15. Life on land ,Body size ,Biology ,010603 evolutionary biology ,01 natural sciences ,Ecological network ,13. Climate action ,Ectotherm ,Predictive power ,business - Abstract
Woodward, Guy ... et al.-- 68 pages, 13 figures, 2 tables, Attempts to gauge the biological impacts of climate change have typically focussed on the lower levels of organization (individuals to populations), rather than considering more complex multi-species systems, such as entire ecological networks (food webs, mutualistic and host–parasitoid networks). We evaluate the possibility that a few principal drivers underpin network-level responses to climate change, and that these drivers can be studied to develop a more coherent theoretical framework than is currently provided by phenomenological approaches. For instance, warming will elevate individual ectotherm metabolic rates, and direct and indirect effects of changes in atmospheric conditions are expected to alter the stoichiometry of interactions between primary consumers and basal resources; these effects are general and pervasive, and will permeate through the entire networks that they affect. In addition, changes in the density and viscosity of aqueous media could alter interactions among very small organisms and disrupt the pycnoclines that currently compartmentalize many aquatic networks in time and space. We identify a range of approaches and potential model systems that are particularly well suited to network-level studies within the context of climate change. We also highlight potentially fruitful areas of research with a view to improving our predictive power regarding climate change impacts on networks. We focus throughout on mechanistic approaches rooted in first principles that demonstrate potential for application across a wide range of taxa and systems, This project was supported by a Natural Environment Research Council Centre for Population Biology grant awarded to G.W.
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- 2010
17. Correlation of chemical components with acoustical properties in atherosclerotic plaque
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J. Tsai, S. Kaiser, P.A.N. Chandraratna, T. Tak, J.P. Jones, E. Yigiter, C. Lohr, and Murray S. A. Thompson
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Correlation ,Materials science ,Radiological and Ultrasound Technology ,Radiology, Nuclear Medicine and imaging ,Biomedical engineering - Published
- 1989
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18. Evaluation of atherosclerotic plaque and detection of early atherosclerosis using quantitative ultrasound methods
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J.P. Jones, T. Tak, S. Kaiser, P.A.N. Chandraratna, C. Lohr, and Murray S. A. Thompson
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Quantitative ultrasound ,medicine.medical_specialty ,Radiological and Ultrasound Technology ,business.industry ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,business - Published
- 1988
- Full Text
- View/download PDF
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