81 results on '"Min Gab Kim"'
Search Results
2. Ca2+/CaM increases the necrotrophic pathogen resistance through the inhibition of a CaM-regulated dual-specificity protein phosphatase 1 in Arabidopsis
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Nhan Thi Nguyen, Sun Ho Kim, Kyung Eun Kim, Sunghwa Bahk, Xuan Canh Nguyen, Min Gab Kim, Jong Chan Hong, and Woo Sik Chung
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Plant Science ,Biotechnology - Published
- 2022
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3. Effect of Hydroxycinnamic Acid Amides, Coumaroyl Tyramine and Coumaroyl Tryptamine on Biotic Stress Response in Arabidopsis
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Donah Mary J. Macoy, Shahab Uddin, Gyeongik Ahn, Son Peseth, Gyeong Ryul Ryu, Joon Yung Cha, Jong-Yeol Lee, Dongryeoul Bae, Seung-Mann Paek, Hye Jin Chung, David Mackey, Sang Yeol Lee, Woe-Yeon Kim, and Min Gab Kim
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Plant Science - Published
- 2022
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4. Inactivation of Airborne Avian Pathogenic E. coli (APEC) via Application of a Novel High-Pressure Spraying System
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Dongryeoul Bae, Kwang-Young Song, Donah Mary Macoy, Min Gab Kim, Chul-Kyu Lee, and Yu-Seong Kim
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Microbiology (medical) ,Virology ,chick ,avian pathogenic E. coli ,colibacillosis ,spray ,space disinfection ,Microbiology - Abstract
Infectious diseases of livestock caused by novel pathogenic viruses and bacteria are a major threat to global animal health and welfare and their effective control is crucial for agronomic health and for securing global food supply. It has been widely recognized that the transmission of infectious agents can occur between people and/or animals in indoor spaces. Therefore, infection control practices are critical to reduce the transmission of the airborne pathogens. ViKiller®-high-pressure sprayer and Deger®-disinfectant are newly developed spraying systems that can produce an optimal size of disinfectants to reduce airborne microbes. The system was evaluated to reduce the infection caused by avian pathogenic Escherichia coli (APEC), an airborne bacterium which survives in indoor spaces. pH-neutral electrolyzed water (NEW) containing 100 ppm of free chlorine, laboratory-scale chambers, a recently developed sprayer, and a conventional sprayer were used in the study. A total of 123 day-of-hatch male layer chicks (Hy-Line W-36) were randomly classified into five groups (negative control (NC): no treatment; treatment 1 (Trt 1): spraying only NEW without APEC; treatment 2 (Trt 2): spraying NEW + APEC using a high-pressure sprayer; treatment 3 (Trt 3): spraying NEW + APEC using a conventional sprayer; positive control (PC): spraying only APEC). Experimental chicks in the chambers were daily exposed to 50 mL of NEW and/or APEC (1.0 × 106 cfu/mL) until the end of the experiment (day 35). APEC strains were sprayed by ViKiller®. At least four chicks in each group were evaluated weekly to monitor APEC infection and determine the lesion. Data showed that our spraying system significantly reduced airborne APEC concentrations, mortality rate, respiratory infection, and APEC lesions in birds in the chamber space (p < 0.05). The results demonstrate that the antibacterial effect of the novel spraying sprayer with NEW on APEC was far superior compared to the conventional sprayer. This study provides a new insight for preventive measures against airborne microorganisms in indoor spaces.
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- 2022
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5. Production of a Bacteria-like Particle Vaccine Targeting Rock Bream (Oplegnathus fasciatus) Iridovirus Using Nicotiana benthamiana
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Gyeongryul Ryu, Gyeong-Im Shin, Gyeongran Park, Joon-Yung Cha, Woe-Yeon Kim, Min Gab Kim, Shi-Jian Song, Inhwan Hwang, Gyeongik Ahn, and Jeong Won Lee
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biology ,Immunogenicity ,Lactococcus lactis ,Nicotiana benthamiana ,Plant Science ,biology.organism_classification ,Microbiology ,law.invention ,chemistry.chemical_compound ,Affinity chromatography ,Capsid ,chemistry ,law ,Recombinant DNA ,Trichloroacetic acid ,Bacteria - Abstract
Viral diseases are extremely widespread infections that change constantly through mutations. To produce vaccines against viral diseases, transient expression systems are employed, and Nicotiana benthamiana (tobacco) plants are a rapidly expanding platform. In this study, we developed a recombinant protein vaccine targeting the major capsid protein (MCP) of iridovirus fused with the lysine motif (LysM) and coiled-coil domain of coronin 1 (ccCor1) for surface display using Lactococcus lactis. The protein was abundantly produced in N. benthamiana in its N-glycosylated form. Total soluble proteins isolated from infiltrated N. benthamiana leaves were treated sequentially with increasing ammonium sulfate solution, and recombinant MCP mainly precipitated at 40–60%. Additionally, affinity chromatography using Ni–NTA resin was applied for further purification. Native structure analysis using size exclusion chromatography showed that recombinant MCP existed in a large oligomeric form. A minimum OD600 value of 0.4 trichloroacetic acid (TCA)-treated L. lactis was required for efficient recombinant MCP display. Immunogenicity of recombinant MCP was assessed in a mouse model through enzyme-linked immunosorbent assay (ELISA) with serum-injected recombinant MCP-displaying L. lactis. In summary, we developed a plant-based recombinant vaccine production system combined with surface display on L. lactis.
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- 2021
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6. Loss-of-function in GIGANTEA confers resistance to PPO-inhibiting herbicide tiafenacil through transcriptional activation of antioxidant genes in Arabidopsis
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Joon-Yung Cha, Gyeong-Im Shin, Gyeongik Ahn, Song Yi Jeong, Myung Geun Ji, Aliya Alimzhan, Min Gab Kim, and Woe-Yeon Kim
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Organic Chemistry ,General Biochemistry, Genetics and Molecular Biology - Abstract
Herbicides play a crucial role in maintaining crop productivity by reducing competition between weeds and crops. Protoporphyrinogen oxidase (PPO)-inhibiting herbicides trigger the photooxidative damage that destroys cell membranes. Tiafenacil is a recently developed pyrimidinedione-type PPO-inhibiting herbicide that has low IC50 values in plants and is less toxic in humans compared to other PPO inhibitors. Previous reports confirmed that mutations in Arabidopsis circadian clock-controlled gene GIGANTEA (GI) were insensitive to phytooxidants, including chloroplast biogenesis inhibitors and herbicides. Here, we examined whether GI regulates the resistance to tiafenacil. Both gi mutant alleles, gi-1 and gi-2, were resistant to tiafenacil with survival rates of 97% and 83%, respectively, under 1 µM tiafenacil treatments, while 56% of wild-type and GI-overexpressing plants (GI-OX) survived. Both gi mutants were insensitive to tiafenacil-induced inhibition of photosystem efficiency and alleviated photooxidative damage. The gi mutants showed significant increases in transcriptional expressions and enzyme activities of antioxidants compared to wild-type and GI-OX. Moreover, loss-of-function in GI enhanced resistance to tiafenacil-containing commercial herbicide Terrad’or Plus®. Collectively, based on our results together with previous reports, mutations in GI confer resistance to herbicides with different MoAs and would be a crucial molecular target for non-target-site resistance strategies to develop herbicide-resistant crops.
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- 2022
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7. Nucleoredoxin 1 positively regulates heat stress tolerance by enhancing the transcription of antioxidants and heat-shock proteins in tomato
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Joon-Yung Cha, Gyeongik Ahn, Song Yi Jeong, Gyeong-Im Shin, Imdad Ali, Myung Geun Ji, Aliya Alimzhan, Sang Yeol Lee, Min Gab Kim, and Woe-Yeon Kim
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Oxidative Stress ,Solanum lycopersicum ,Gene Expression Regulation, Plant ,Biophysics ,Cell Biology ,Hydrogen Peroxide ,Oxidoreductases ,Molecular Biology ,Biochemistry ,Antioxidants ,Heat-Shock Proteins ,Heat-Shock Response ,Plant Proteins - Abstract
Thioredoxins (TRXs) are small oxidoreductase proteins located in various subcellular compartments. Nucleoredoxin (NRX) is a nuclear-localized TRX and a key component for the integration of the antioxidant system with the immune response. Although NRX is well characterized in biotic stress responses, its functional role in abiotic stress responses is still elusive. To understand whether NRX contributes to heat stress response in tomato (Solanum lycopersicum), we generated CRISPR/Cas9-mediated mutations in SlNRX1 (slnrx1). Interestingly, the slnrx1 mutant was extremely sensitive to heat stress with higher electrolyte leakage, malondialdehyde contents, and H
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- 2022
8. Inactivation of Airborne Avian Pathogenic
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Dongryeoul, Bae, Kwang-Young, Song, Donah Mary, Macoy, Min Gab, Kim, Chul-Kyu, Lee, and Yu-Seong, Kim
- Abstract
Infectious diseases of livestock caused by novel pathogenic viruses and bacteria are a major threat to global animal health and welfare and their effective control is crucial for agronomic health and for securing global food supply. It has been widely recognized that the transmission of infectious agents can occur between people and/or animals in indoor spaces. Therefore, infection control practices are critical to reduce the transmission of the airborne pathogens. ViKiller
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- 2022
9. Plant‐based, adjuvant‐free, potent multivalent vaccines for avian influenza virus via Lactococcus surface display
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Ji-Ho Lee, Jin-Yong Noh, Gyeongryul Ryu, Gyeong-Im Shin, Eun-Ju Sohn, Woe-Yeon Kim, Min Gab Kim, Hyungmin Jeon, Shi-Jian Song, Inhwan Hwang, Young Min Park, Gyeongik Ahn, Hai-Ping Diao, Young-Jin Kim, Deok-Hwan Kim, and Chang-Seon Song
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medicine.medical_treatment ,Lactococcus ,Plant Science ,Biology ,Endoplasmic Reticulum ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Mice ,Immune system ,Adjuvants, Immunologic ,Protein Domains ,Antigen ,Tobacco ,Influenza A Virus, H9N2 Subtype ,medicine ,Animals ,Vaccines, Combined ,Antigens, Viral ,Attenuated vaccine ,Plant Extracts ,Immunogenicity ,Immunity ,Plants, Genetically Modified ,biology.organism_classification ,Virology ,Vaccination ,Hemagglutinins ,Influenza Vaccines ,Immunization ,Protein Multimerization ,Chickens ,Adjuvant - Abstract
Influenza epidemics frequently and unpredictably break out all over the world, and seriously affect the breeding industry and human activity. Inactivated and live attenuated viruses have been used as protective vaccines but exhibit high risks for biosafety. Subunit vaccines enjoy high biosafety and specificity but have a few weak points compared to inactivated virus or live attenuated virus vaccines, especially in low immunogenicity. In this study, we developed a new subunit vaccine platform for a potent, adjuvant-free, and multivalent vaccination. The ectodomains of hemagglutinins (HAs) of influenza viruses were expressed in plants as trimers (tHAs) to mimic their native forms. tHAs in plant extracts were directly used without purification for binding to inactivated Lactococcus (iLact) to produce iLact-tHAs, an antigen-carrying bacteria-like particle (BLP). tHAs BLP showed strong immune responses in mice and chickens without adjuvants. Moreover, simultaneous injection of two different antigens by two different formulas, tHAH5N6 + H9N2 BLP or a combination of tHAH5N6 BLP and tHAH9N2 BLP, led to strong immune responses to both antigens. Based on these results, we propose combinations of plant-based antigen production and BLP-based delivery as a highly potent and cost-effective platform for multivalent vaccination for subunit vaccines.
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- 2021
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10. Redox-dependent structural switch and CBF activation confer freezing tolerance in plants
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Myung Geun Ji, Chang Ho Kang, Gary Stacey, Sang Yeol Lee, Joung Hun Park, Ho Byoung Chae, Woe-Yeon Kim, Seong Dong Wi, Yong Hun Chi, Eun Seon Lee, Min Gab Kim, Seol Ki Paeng, and Dae-Jin Yun
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animal structures ,biology ,Chemistry ,Plant Science ,biology.organism_classification ,Cell biology ,Cytosol ,Cytoplasm ,Arabidopsis ,Glycine ,Gene expression ,Thioredoxin ,Transcription factor ,Myristoylation - Abstract
The activities of cold-responsive C-repeat-binding transcription factors (CBFs) are tightly controlled as they not only induce cold tolerance but also regulate normal plant growth under temperate conditions1-4. Thioredoxin h2 (Trx-h2)-a cytosolic redox protein identified as an interacting partner of CBF1-is normally anchored to cytoplasmic endomembranes through myristoylation at the second glycine residue5,6. However, after exposure to cold conditions, the demyristoylated Trx-h2 is translocated to the nucleus, where it reduces the oxidized (inactive) CBF oligomers and monomers. The reduced (active) monomers activate cold-regulated gene expression. Thus, in contrast to the Arabidopsis trx-h2 (AT5G39950) null mutant, Trx-h2 overexpression lines are highly cold tolerant. Our findings reveal the mechanism by which cold-mediated redox changes induce the structural switching and functional activation of CBFs, therefore conferring plant cold tolerance.
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- 2021
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11. The thiol-reductase activity of YUCCA6 enhances nickel heavy metal stress tolerance in Arabidopsis
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Joon-Yung Cha, Song Yi Jeong, Gyeongik Ahn, Gyeong-Im Shin, Myung Geun Ji, Sang Cheol Lee, Dhruba Khakurel, Donah Mary Macoy, Yong Bok Lee, Min Gab Kim, Sang Yeol Lee, Dae-Jin Yun, and Woe-Yeon Kim
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Plant Science - Abstract
Anthropogenic activities cause the leaching of heavy metals into groundwater and their accumulation in soil. Excess levels of heavy metals cause toxicity in plants, inducing the production of reactive oxygen species (ROS) and possible death caused by the resulting oxidative stress. Heavy metal stresses repress auxin biosynthesis and transport, inhibiting plant growth. Here, we investigated whether nickel (Ni) heavy metal toxicity is reduced by exogenous auxin application and whether Ni stress tolerance in Arabidopsis thaliana is mediated by the bifunctional enzyme YUCCA6 (YUC6), which functions as an auxin biosynthetic enzyme and a thiol-reductase (TR). We found that an application of up to 1 µM exogenous indole-3-acetic acid (IAA) reduces Ni stress toxicity. yuc6-1D, a dominant mutant of YUC6 with high auxin levels, was more tolerant of Ni stress than wild-type (WT) plants, despite absorbing significantly more Ni. Treatments of WT plants with YUCASIN, a specific inhibitor of YUC-mediated auxin biosynthesis, increased Ni toxicity; however yuc6-1D was not affected by YUCASIN and remained tolerant of Ni stress. This suggests that rather than the elevated IAA levels in yuc6-1D, the TR activity of YUC6 might be critical for Ni stress tolerance. The loss of TR activity in YUC6 caused by the point-mutation of Cys85 abolished the YUC6-mediated Ni stress tolerance. We also found that the Ni stress–induced ROS accumulation was inhibited in yuc6-1D plants, which consequently also showed reduced oxidative damage. An enzymatic assay and transcriptional analysis revealed that the peroxidase activity and transcription of PEROXIREDOXIN Q were enhanced by Ni stress to a greater level in yuc6-1D than in the WT. These findings imply that despite the need to maintain endogenous IAA levels for basal Ni stress tolerance, the TR activity of YUC6, not the elevated IAA levels, plays the predominant role inNi stress tolerance by lowering Ni-induced oxidative stress.
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- 2022
12. Universal Stress Protein regulates the circadian rhythm of central oscillator genes in Arabidopsis
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Kieu Anh Thi Phan, Seol Ki Paeng, Ho Byoung Chae, Joung Hun Park, Eun Seon Lee, Seong Dong Wi, Su Bin Bae, Min Gab Kim, Dae‐Jin Yun, Woe‐Yeon Kim, and Sang Yeol Lee
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Structural Biology ,Arabidopsis Proteins ,Gene Expression Regulation, Plant ,Circadian Clocks ,Genetics ,Biophysics ,Arabidopsis ,Cell Biology ,Molecular Biology ,Biochemistry ,Heat-Shock Proteins ,Circadian Rhythm ,Transcription Factors - Abstract
Environmental stresses restrict plant growth and development and decrease crop yield. The circadian clock is associated with the ability of a plant to adapt to daily environmental fluctuations and the production and consumption of energy. Here, we investigated the role of Arabidopsis Universal Stress Protein (USP; At3g53990) in the circadian regulation of nuclear clock genes. The Arabidopsis usp knockout mutant line exhibited critically diminished circadian amplitude of the central oscillator CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) but enhanced the amplitude of TIMING OF CAB EXPRESSION 1 (TOC1). However, the expression of USP under the control of its own promoter restored the circadian timing of both genes, suggesting that USP regulates the circadian rhythm of Arabidopsis central clock genes, CCA1 and TOC1.
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- 2022
13. Inositol-requiring enzyme 1 (IRE1) plays for AvrRpt2-triggered immunity and RIN4 cleavage in Arabidopsis under endoplasmic reticulum (ER) stress
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Donah Mary Macoy, Woe-Yeon Kim, Sang Yeol Lee, Si On Park, Rupak Chakraborty, Gyeong Ryul Ryu, Jong-Yeol Lee, Min Gab Kim, Duong Thu Van Anh, Young Hun Kim, Joon-Yung Cha, and Shahab Uddin
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0106 biological sciences ,0301 basic medicine ,Physiology ,Arabidopsis ,Pseudomonas syringae ,Cellular homeostasis ,Plant Science ,Protein Serine-Threonine Kinases ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,Genetics ,Plant Immunity ,Plant Diseases ,biology ,Arabidopsis Proteins ,Chemistry ,Endoplasmic reticulum ,Pathogen-Associated Molecular Pattern Molecules ,fungi ,Intracellular Signaling Peptides and Proteins ,food and beverages ,Tunicamycin ,Endoplasmic Reticulum Stress ,biology.organism_classification ,Cell biology ,030104 developmental biology ,Unfolded protein response ,Signal transduction ,Inositol ,Systemic acquired resistance ,Signal Transduction ,010606 plant biology & botany - Abstract
Many stresses induce the accumulation of unfolded and misfolded proteins in the endoplasmic reticulum, a phenomenon known as ER stress. In response to ER stress, cells initiate a protective response, known as unfolded protein response (UPR), to maintain cellular homeostasis. The UPR sensor, inositol-requiring enzyme 1 (IRE1), catalyzes the cytoplasmic splicing of bZIP transcription factor-encoding mRNAs to activate the UPR signaling pathway. Recently, we reported that pretreatment of Arabidopsis thaliana plants with tunicamycin, an ER stress inducer, increased their susceptibility to bacterial pathogens; on the other hand, IRE1 deficient mutants were susceptible to Pseudomonas syringae pv. maculicola (Psm) and failed to induce salicylic acid (SA)-mediated systemic acquired resistance. However, the functional relationship of IRE1 with the pathogen and TM treatment remains unknown. In the present study, we showed that bacterial pathogen-associated molecular patterns (PAMPs) induced IRE1 expression; however, PAMP-triggered immunity (PTI) response such as callose deposition, PR1 protein accumulation, or Pst DC3000 hrcC growth was not altered in ire1 mutants. We observed that IRE1 enhanced plant immunity against the bacterial pathogen P. syringae pv. tomato DC3000 (Pst DC3000) under ER stress. Moreover, TM-pretreated ire1 mutants were more susceptible to the avirulent strain Pst DC3000 (AvrRpt2) and showed greater cell death than wild-type plants during effector-triggered immunity (ETI). Additionally, Pst DC3000 (AvrRpt2)-mediated RIN4 degradation was reduced in ire1 mutants under TM-induced ER stress. Collectively, our results reveal that IRE1 plays a pivotal role in the immune signaling pathway to activate plant immunity against virulent and avirulent bacterial strains under ER stress.
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- 2020
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14. HOS15 represses flowering by promoting GIGANTEA degradation in response to low temperature in Arabidopsis
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Gyeongik Ahn, Hee Jin Park, Song Yi Jeong, Gyeong-Im Shin, Myung Geun Ji, Joon-Yung Cha, Jeongsik Kim, Min Gab Kim, Dae-Jin Yun, and Woe-Yeon Kim
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Cell Biology ,Plant Science ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2023
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15. Phytochrome B Positively Regulates Red Light-Mediated ER Stress Response in
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Gyeongik, Ahn, In Jung, Jung, Joon-Yung, Cha, Song Yi, Jeong, Gyeong-Im, Shin, Myung Geun, Ji, Min Gab, Kim, Sang Yeol, Lee, and Woe-Yeon, Kim
- Abstract
Light plays a crucial role in plant growth and development, and light signaling is integrated with various stress responses to adapt to different environmental changes. During this process, excessive protein synthesis overwhelms the protein-folding ability of the endoplasmic reticulum (ER), causing ER stress. Although crosstalk between light signaling and ER stress response has been reported in plants, the molecular mechanisms underlying this crosstalk are poorly understood. Here, we demonstrate that the photoreceptor phytochrome B (phyB) induces the expression of ER luminal protein chaperones as well as that of unfolded protein response (UPR) genes. The
- Published
- 2021
16. Author Correction: Redox-dependent structural switch and CBF activation confer freezing tolerance in plants
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Eun Seon Lee, Joung Hun Park, Seong Dong Wi, Chang Ho Kang, Yong Hun Chi, Ho Byoung Chae, Seol Ki Paeng, Myung Geun Ji, Woe-Yeon Kim, Min Gab Kim, Dae-Jin Yun, Gary Stacey, and Sang Yeol Lee
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Plant Science - Published
- 2022
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17. Correction: Lee et al. Demyristoylation of the Cytoplasmic Redox Protein Trx-h2 Is Critical for Inducing a Rapid Cold Stress Response in Plants. Antioxidants 2021, 10, 1287
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Eun Seon Lee, Joung Hun Park, Seong Dong Wi, Ho Byoung Chae, Seol Ki Paeng, Su Bin Bae, Kieu Anh Thi Phan, Min Gab Kim, Sang-Soo Kwak, Woe-Yeon Kim, Dae-Jin Yun, and Sang Yeol Lee
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Physiology ,Clinical Biochemistry ,Cell Biology ,Molecular Biology ,Biochemistry - Abstract
In the original publication [...]
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- 2022
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18. Demyristoylation of the Cytoplasmic Redox Protein Trx-h2 Is Critical for Inducing a Rapid Cold Stress Response in Plants
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Woe-Yeon Kim, Joung Hun Park, Seong Dong Wi, Eun Seon Lee, Kieu Anh Thi Phan, Min Gab Kim, Sang Yeol Lee, Dae-Jin Yun, Seol Ki Paeng, Su Bin Bae, Ho Byoung Chae, and Sang-Soo Kwak
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thioredoxin h2 ,animal structures ,Physiology ,Clinical Biochemistry ,Mutant ,nuclear translocation ,RM1-950 ,Biochemistry ,Article ,myristoylation/demyristoylation ,Arabidopsis ,Trx-h2(G/A) point mutation variant ,Molecular Biology ,Myristoylation ,Alanine ,biology ,Chemistry ,Wild type ,Cell Biology ,biology.organism_classification ,cold/freezing stress ,Cell biology ,Cytosol ,transgenic Arabidopsis ,C-repeat binding factors (CBFs) ,Cytoplasm ,Therapeutics. Pharmacology ,Thioredoxin - Abstract
In Arabidopsis, the cytosolic redox protein thioredoxin h2 (Trx-h2) is anchored to the cytoplasmic endomembrane through the myristoylated second glycine residue (Gly2). However, under cold stress, the cytosolic Trx-h2 is rapidly translocated to the nucleus, where it interacts with and reduces the cold-responsive C-repeat-binding factors (CBFs), thus activating cold-responsive (COR) genes. In this study, we investigated the significance of fatty acid modification of Trx-h2 under cold conditions by generating transgenic Arabidopsis lines in the trx-h2 mutant background, overexpressing Trx-h2 (Trx-h2OE/trx-h2) and its point mutation variant Trx-h2(G/A) [Trx-h2(G/A)OE/trx-h2], in which the Gly2 was replaced by alanine (Ala). Due to the lack of Gly2, Trx-h2(G/A) was incapable of myristoylation, and a part of Trx-h2(G/A) localized to the nucleus even under warm temperature. As no time is spent on the demyristoylation and subsequent nuclear translocation of Trx-h2(G/A) under a cold snap, the ability of Trx-h2(G/A) to protect plants from cold stress was greater than that of Trx-h2. Additionally, COR genes were up-regulated earlier in Trx-h2(G/A)2OE/trx-h2 plants than in Trx-h2OE/trx-h2 plants under cold stress. Consequently, Trx-h2(G/A)2OE/trx-h2 plants showed greater cold tolerance than Col-0 (wild type) and Trx-h2OE/trx-h2 plants. Overall, our results clearly demonstrate the significance of the demyristoylation of Trx-h2 in enhancing plant cold/freezing tolerance.
- Published
- 2021
19. Improved Measurement of Thin Film Thickness in Spectroscopic Reflectometer Using Convolutional Neural Networks
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Min-Gab Kim
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0209 industrial biotechnology ,Materials science ,business.industry ,Mechanical Engineering ,Value (computer science) ,02 engineering and technology ,Reflectivity ,Convolutional neural network ,Industrial and Manufacturing Engineering ,Nonlinear system ,020303 mechanical engineering & transports ,020901 industrial engineering & automation ,Optics ,0203 mechanical engineering ,Electrical and Electronic Engineering ,Thin film ,business - Abstract
This research introduces a novel method of ensuring more reliable measurement of thin film thickness in spectroscopic reflectometer. Nonlinear fitting is the method most commonly used for measuring thin film thickness; however, it runs into the problem of a local minimum, which entails ambiguity. To improve measurement, prior to analysis of spectral reflectance profiles using nonlinear fitting, initial thickness value is estimated based on convolutional neural networks. Due to the supportive role of convolutional neural networks, thin film thickness can be determined without ambiguity.
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- 2019
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20. Arabidopsis GIGANTEA negatively regulates chloroplast biogenesis and resistance to herbicide butafenacil
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Imdad Ali, Bobae Shin, Da-Yeon Lee, Woe-Yeon Kim, Hyunjung Ji, Joon-Yung Cha, Jung Sun Kim, Song Yi Jeong, and Min-Gab Kim
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0106 biological sciences ,0301 basic medicine ,Chloroplasts ,Hydrocarbons, Fluorinated ,Mutant ,Arabidopsis ,Plant Science ,01 natural sciences ,Superoxide dismutase ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Superoxides ,parasitic diseases ,Arabidopsis thaliana ,biology ,Arabidopsis Proteins ,Herbicides ,Abiotic stress ,Wild type ,food and beverages ,Hydrogen Peroxide ,General Medicine ,biology.organism_classification ,Cell biology ,Chloroplast ,Pyrimidines ,030104 developmental biology ,biology.protein ,population characteristics ,human activities ,Agronomy and Crop Science ,Biogenesis ,010606 plant biology & botany - Abstract
Arabidopsis GI negatively regulates chloroplast biogenesis and resistance to the herbicide butafenacil by enhanced activity and transcriptional levels of antioxidant enzymes Chloroplast biogenesis is blocked by retrograde signaling triggered by diverse internal and external cues, including sugar, reactive oxygen species (ROS), phytohormones, and abiotic stress. Efficient chloroplast biogenesis is essential for crop productivity due to its effect on photosynthetic efficiency, and is associated with agronomic traits such as insect/disease resistance, herbicide resistance, and abiotic stress tolerance. Here, we show that the circadian clock-controlled gene GIGANTEA (GI) regulates chloroplast biogenesis in Arabidopsis thaliana. The gi-2 mutant showed reduced sensitivity to the chloroplast biogenesis inhibitor lincomycin, maintaining high levels of photosynthetic proteins. By contrast, wild-type and GI-overexpressing plants were sensitive to lincomycin, with variegated leaves and reduced photosynthetic protein levels. GI is degraded by lincomycin, suggesting that GI is genetically linked to chloroplast biogenesis. The GI mutant alleles gi-1 and gi-2 were resistant to the herbicide butafenacil, which inhibits protoporphyrinogen IX oxidase activity and triggers ROS-mediated cell death via the accumulation of chlorophyll precursors. Butafenacil-mediated accumulation of superoxide anions and H2O2 was not detected in gi-1 or gi-2, as revealed by histochemical staining. The activities of the antioxidant enzymes superoxide dismutase, peroxidase, and catalase were 1.2–1.4-fold higher in both gi mutants compared to the wild type. Finally, the expression levels of antioxidant enzyme genes were 1.5–2-fold higher in the mutants than in the wild type. These results suggest that GI negatively regulates chloroplast biogenesis and resistance to the herbicide butafenacil, providing evidence for a genetic link between GI and chloroplast biogenesis, which could facilitate the development of herbicide-resistant crops.
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- 2019
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21. Accurate determination of two-dimensional thin film thickness in spectroscopic imaging reflectometer using color camera and tunable aperture
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Min-Gab Kim and Garam Choi
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Materials science ,Aperture ,business.industry ,Detector ,Signal ,Reflectivity ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Optics ,Angle of incidence (optics) ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,Thin film ,business - Abstract
A new method is introduced to ensure accurate reconstruction of two-dimensional thin film thickness in a spectroscopic imaging reflectometer. Its simple configuration is an advantage of a system that employs color camera as a detector, however, it has the problem of ambiguity in determination of the thin film thickness. To secure reliable measurement performance, multi-reflectance method is applied. The angle of incidence can be changed by adjusting the diameter of the tunable aperture. After integrating multiple reflectance signals acquired at different angles of incidence, one combined signal enables exact determination of thin film thickness.
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- 2019
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22. Production of a Bacteria-like Particle Vaccine Targeting Rock Bream (
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Gyeongik, Ahn, Joon-Yung, Cha, Jeong Won, Lee, Gyeongran, Park, Gyeong-Im, Shin, Shi-Jian, Song, Gyeongryul, Ryu, Inhwan, Hwang, Min Gab, Kim, and Woe-Yeon, Kim
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Iridovirus ,Major capsid protein ,Bacteria-like particle ,Nicotiana benthamiana ,Research Article ,Plant-based vaccine - Abstract
Viral diseases are extremely widespread infections that change constantly through mutations. To produce vaccines against viral diseases, transient expression systems are employed, and Nicotiana benthamiana (tobacco) plants are a rapidly expanding platform. In this study, we developed a recombinant protein vaccine targeting the major capsid protein (MCP) of iridovirus fused with the lysine motif (LysM) and coiled-coil domain of coronin 1 (ccCor1) for surface display using Lactococcus lactis. The protein was abundantly produced in N. benthamiana in its N-glycosylated form. Total soluble proteins isolated from infiltrated N. benthamiana leaves were treated sequentially with increasing ammonium sulfate solution, and recombinant MCP mainly precipitated at 40–60%. Additionally, affinity chromatography using Ni–NTA resin was applied for further purification. Native structure analysis using size exclusion chromatography showed that recombinant MCP existed in a large oligomeric form. A minimum OD600 value of 0.4 trichloroacetic acid (TCA)-treated L. lactis was required for efficient recombinant MCP display. Immunogenicity of recombinant MCP was assessed in a mouse model through enzyme-linked immunosorbent assay (ELISA) with serum-injected recombinant MCP-displaying L. lactis. In summary, we developed a plant-based recombinant vaccine production system combined with surface display on L. lactis.
- Published
- 2021
23. Spectroscopic imaging ellipsometry for two-dimensional thin film thickness measurement using a digital light processing projector
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Min-gab Kim
- Subjects
Applied Mathematics ,Instrumentation ,Engineering (miscellaneous) - Abstract
An improved version of spectroscopic imaging ellipsometry is described for accurate reconstruction of two-dimensional thin film thickness. A digital light processing projector enables a selected area of the back focal plane of the objective lens to be illuminated so that the angle of incidence and the polarization state of the light source vary depending on the area of the back focal plane being illuminated. By combining multiple images of the object plane obtained at different polarization states, every pixel in the field of view has its own ellipsometric parameters; therefore a reconstruction of two-dimensional thin film thickness is possible. Because the proposed ellipsometry system has a co-axial optical structure in which the objective lens is arranged in the normal direction to the measurement target, the spatial resolution is improved due to the application of a high-magnitude objective lens. In addition, spectroscopic analysis can be conducted using a number of band-pass filters which each have a central wavelength. The effect of the proposed method on thin film thickness measurement was evaluated by comparing the experimental results with a topographic profile obtained using a commercial atomic force microscope.
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- 2022
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24. Molecular characterization of HEXOKINASE1 in plant innate immunity
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Si On Park, Rupak Chakraborty, Woe-Yeon Kim, Joon Yung Cha, Gyeong Ryul Ryu, Young Hun Kim, Wu Jing, Shahab Uddin, Min Gab Kim, Duong Thu Van Anh, and Donah Mary Macoy
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0106 biological sciences ,0303 health sciences ,Innate immune system ,biology ,Chemistry ,Organic Chemistry ,Callose ,Plant Immunity ,biology.organism_classification ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,Immune system ,Immunity ,Arabidopsis ,Pseudomonas syringae ,Effector-triggered immunity ,030304 developmental biology ,010606 plant biology & botany - Abstract
Hexokinase1 (HXK1) is an Arabidopsis glucose sensor that has a variety of roles during plant growth and devlopment, including during germination, flowering, and senescence. HXK1 also acts as a positive regulator of plant immune responses. Previous research suggested that HXK1 might influence plant immune responses via responses to glucose. Plant immune responses are governed by two main pathways: PAMP-triggered immunity (PTI) and effector-triggered immunity (ETI). PTI involves the recognition of Pathogen-Associated Molecular Patterns (PAMPs) and leads to increased callose formation and accumulation of pathogenesis response (PR) proteins. ETI acts in response to effectors secreted by Gram-negative bacteria. During ETI, the membrane-localized protein RPM1-interacting protein 4 (RIN4) becomes phosphorylated in reponse to interactions with effectors and mediates the downstream response. In this study, the effects of glucose on plant immune responses against infection with Pseudomonas syringae pv. tomato DC3000 and other P. syringae strains were investigated in the presence and absence of HXK1. Infiltration of leaves with glucose prior to infection led to decreases in bacterial populations and reductions in disease symptoms in wild-type Arabidopsis plants, indicating that glucose plays a role in plant immunity. Both PTI and ETI responses were affected. However, these effects were not observed in a hxk1 mutant, indicating that the effects of glucose on plant immune responses were mediated by HXK1-related pathways.
- Published
- 2020
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25. Humic acid enhances heat stress tolerance via transcriptional activation of Heat-Shock Proteins in Arabidopsis
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Song Yi Jeong, Sang Cheol Lee, Woe-Yeon Kim, Gyeong-Im Shin, Sang-Ho Kang, Min Gab Kim, Jong-Rok Jeon, Imdad Ali, Joon-Yung Cha, and Myung Geun Ji
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Thermotolerance ,Transcriptional Activation ,0106 biological sciences ,0301 basic medicine ,Plant growth ,Molecular biology ,Arabidopsis ,lcsh:Medicine ,01 natural sciences ,Article ,Transcriptome ,03 medical and health sciences ,Heat shock protein ,Humic acid ,lcsh:Science ,Gene ,Heat-Shock Proteins ,Humic Substances ,chemistry.chemical_classification ,Multidisciplinary ,biology ,lcsh:R ,biology.organism_classification ,Computational biology and bioinformatics ,Heat stress ,Cell biology ,030104 developmental biology ,chemistry ,lcsh:Q ,Plant sciences ,Function (biology) ,010606 plant biology & botany - Abstract
Humic acid (HA) is composed of a complex supramolecular association and is produced by humification of organic matters in soil environments. HA not only improves soil fertility, but also stimulates plant growth. Although numerous bioactivities of HA have been reported, the molecular evidences have not yet been elucidated. Here, we performed transcriptomic analysis to identify the HA-prompted molecular mechanisms in Arabidopsis. Gene ontology enrichment analysis revealed that HA up-regulates diverse genes involved in the response to stress, especially to heat. Heat stress causes dramatic induction in unique gene families such as Heat-Shock Protein (HSP) coding genes including HSP101, HSP81.1, HSP26.5, HSP23.6, and HSP17.6A. HSPs mainly function as molecular chaperones to protect against thermal denaturation of substrates and facilitate refolding of denatured substrates. Interestingly, wild-type plants grown in HA were heat-tolerant compared to those grown in the absence of HA, whereas Arabidopsis HSP101 null mutant (hot1) was insensitive to HA. We also validated that HA accelerates the transcriptional expression of HSPs. Overall, these results suggest that HSP101 is a molecular target of HA promoting heat-stress tolerance in Arabidopsis. Our transcriptome information contributes to understanding the acquired genetic and agronomic traits by HA conferring tolerance to environmental stresses in plants.
- Published
- 2020
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26. Redox sensor QSOX1 regulates plant immunity by targeting GSNOR to modulate ROS generation
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Ho Byoung Chae, Seong Dong Wi, Dae-Jin Yun, Sang Yeol Lee, David Mackey, Chang Ho Kang, Joung Hun Park, Byung-Wook Yun, Yong Hun Chi, Sang-Uk Lee, Eun Seon Lee, Seol Ki Paeng, Su Bin Bae, Min Gab Kim, and Woe-Yeon Kim
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0106 biological sciences ,0301 basic medicine ,Plant Immunity ,chemistry.chemical_element ,Plant Science ,Redox sensor ,Reductase ,Biology ,01 natural sciences ,Redox ,Oxygen ,03 medical and health sciences ,Oxidoreductases Acting on Sulfur Group Donors ,Molecular Biology ,Biological Phenomena ,chemistry.chemical_classification ,Reactive oxygen species ,Plants ,Aldehyde Oxidoreductases ,Cell biology ,030104 developmental biology ,chemistry ,Reactive Oxygen Species ,Sulfhydryl oxidase ,Oxidation-Reduction ,010606 plant biology & botany ,Signal Transduction - Abstract
Reactive oxygen signaling regulates numerous biological processes, including stress responses in plants. Redox sensors transduce reactive oxygen signals into cellular responses. Here, we present biochemical evidence that a plant quiescin sulfhydryl oxidase homolog (QSOX1) is a redox sensor that negatively regulates plant immunity against a bacterial pathogen. The expression level of QSOX1 is inversely correlated with pathogen-induced reactive oxygen species (ROS) accumulation. Interestingly, QSOX1 both senses and regulates ROS levels by interactingn with and mediating redox regulation of S-nitrosoglutathione reductase, which, consistent with previous findings, influences reactive nitrogen-mediated regulation of ROS generation. Collectively, our data indicate that QSOX1 is a redox sensor that negatively regulates plant immunity by linking reactive oxygen and reactive nitrogen signaling to limit ROS production.
- Published
- 2020
27. Fast and Reliable Measurement of Thin Film Thickness Profile Based on Wavelet Transform in Spectrally Resolved White-Light Interferometry
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Heui Jae Pahk and Min-Gab Kim
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White light interferometry ,Interferometric phase ,Materials science ,business.industry ,Mechanical Engineering ,Measure (physics) ,Wavelet transform ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Industrial and Manufacturing Engineering ,010309 optics ,Interferometry ,Optics ,Semiconductor ,0103 physical sciences ,Microelectronics ,Electrical and Electronic Engineering ,Thin film ,0210 nano-technology ,business - Abstract
We describe an improved version of spectrally resolved white-light interferometry that enables us to measure thin film thickness profile in a faster and more reliable way. Both the interferometric phase and the spectral reflectance of thin films are monitored at the same time in order to obtain accurate thickness and top surface height of thin films, leading to the complete reconstruction of the 3D tomographic profile of thin films. To do that, information related to the layers of thin films and top surface height of thin films must be decoupled and, based on wavelet transform, allowing it to be achieved without introducing two troublesome measurement steps or spectral carrier frequency. The experimental results for a prepared specimen showed that thin film thickness profile could be determined within an error range of 9 nm compared to well-known techniques. Due to the rigorous approach used in the proposed method, it is well suited for the in-line high-speed inspection of microelectronic devices produced in large quantities as is done in the semiconductor and flat-panel display industries.
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- 2018
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28. Production and characterization of polyclonal antibody against Arabidopsis GIGANTEA, a circadian clock controlled flowering time regulator
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Laila Khaleda, Woe-Yeon Kim, Min Gab Kim, and Joon-Yung Cha
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0106 biological sciences ,0301 basic medicine ,Circadian clock ,Mutant ,Gigantea ,social sciences ,Plant Science ,Biology ,biology.organism_classification ,01 natural sciences ,Epitope ,law.invention ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Affinity chromatography ,law ,Polyclonal antibodies ,Arabidopsis ,parasitic diseases ,Recombinant DNA ,biology.protein ,population characteristics ,human activities ,010606 plant biology & botany - Abstract
Arabidopsis GIGANTEA (GI) is encoded by a single gene and highly conserved among vascular plants and its mutants display pleiotropic phenotypes involved in diverse biological processes such as light signaling, circadian clock, and sucrose metabolism as well as abiotic stress responses. However, molecular mechanisms of GI are largely unknown due to the lack of useful antibody. To date, the epitope tags have been widely used to detect GI in plants, but it needs to generate the transgenic plants which take a few months. Here, we produced polyclonal α-GI antibody using truncated variants of GI having amino-terminal (1–858 aa) and carboxyl-terminal (920–1173) regions as antigens. Both recombinant His-GI1-858 and His-GI920–1173 proteins were individually and successfully expressed in E. coli and immunized into rabbit. Anti-serum was purified by antigenspecific affinity purification method using both recombinant His-GI1–858 and His-GI920–1173 proteins. Purified polyclonal α-GI antibody not only detected endogenous GI proteins in wild-type Arabidopsis plants, but also reenacted its diel oscillations. Furthermore, the antibody showed cross-reactivity with the GI orthologs in other plants such as Chinese cabbage, rape and tomato. Our polyclonal GI antibody could help to determine the molecular mechanisms of GI involved in largely unknown pleiotropic responses in plants.
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- 2017
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29. Foliar application of humic acid or a mixture of catechol and vanillic acid enhanced growth and productivity of alfalfa
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Min Gab Kim, Joon-Yung Cha, Jong-Rok Jeon, Woe-Yeon Kim, and Laila Khaleda
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chemistry.chemical_classification ,Catechol ,Peat ,Materials science ,biology ,fungi ,food and beverages ,biology.organism_classification ,complex mixtures ,Horticulture ,chemistry.chemical_compound ,Agronomy ,chemistry ,Germination ,Seedling ,Soil water ,cardiovascular system ,Vanillic acid ,Humic acid ,Soil fertility - Abstract
Humic acid (HA) is known to consist of various kinds of polymeric organics, their detailed structures can vary depend on sample sources such as organic manure, composts, peat, and lignite brown coal, and largely exists in grassland soils. HA possesses diverse positive effects that not only increase plant growth but also improve soil fertility. Recently, we have manufactured a co-polymeric product of catechol and vanillic acid (CAVA) synthesized artificially, and found that CAVA as a HA mimic increases seed germination and salt tolerance in Arabidopsis. In this study, we examined whether HA or CAVA affects to seedling growth in alfalfa. Foliar application of HA or CAVA increased alfalfa seedling growth including aerial and in root parts. HA or CAVA dramatically enhanced size of leaf and root, whereas HA significantly displayed higher bioactivity than CAVA. Taken together, CAVA acts like as a HA mimic in alfalfa that could apply as an alternation supplement to enhance plant growth and productivity.
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- 2017
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30. Humic Acid and Synthesized Humic Mimic Promote the Growth of Italian Ryegrass
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Woe-Yeon Kim, Laila Khaleda, Jong-Rok Jeon, Min Gab Kim, and Joon-Yung Cha
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chemistry.chemical_classification ,Plant growth ,geography ,geography.geographical_feature_category ,fungi ,food and beverages ,Biology ,biology.organism_classification ,Grassland ,chemistry.chemical_compound ,Horticulture ,chemistry ,Agronomy ,Germination ,Seedling ,Soil water ,Vanillic acid ,Humic acid ,Organic matter - Abstract
Humic acid (HA) is a complex organic matter found in the environments, especially in grassland soils with a high density. The bioactivity of HA to promote plant growth depends largely on its extraction sources. The quality-control of HA and the quality improvements via an artificial synthesis are thus challenging. We recently reported that a polymeric product from fungal laccase-mediated oxidation of catechol and vanillic acid (CAVA) displays a HA-like activity to enhance seed germination and salt stress tolerance in a model plant, Arabidopsis. Here, we examined whether HA or CAVA enhances the growth of Italian ryegrass seedling. Height and fresh weight of the plant with foliar application of HA or CAVA were bigger than those with only water. Interestingly, enhanced root developments were also observed in spite of the foliar treatments of HA or CAVA. Finally, we proved that HA or CAVA promotes the regrowth of Italian ryegrass after cutting. Collectively, CAVA acts as a HA mimic in Italian ryegrass cultivation, and both as a biostimulant enhanced the early growth and regrowth after cutting of Italian ryegrass, which could improve the productivity of forage crops.
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- 2017
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31. Tunicamycin-induced endoplasmic reticulum stress suppresses plant immunity
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Donah Mary Macoy, Woe-Yeon Kim, Rupak Chakraborty, Min Gab Kim, and Sang Yeol Lee
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0106 biological sciences ,0301 basic medicine ,Hypersensitive response ,Programmed cell death ,Chemistry ,Effector ,Endoplasmic reticulum ,Organic Chemistry ,Cellular homeostasis ,Tunicamycin ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Immune system ,Unfolded protein response ,010606 plant biology & botany - Abstract
Most secretory and membrane proteins are properly folded in the endoplasmic reticulum (ER) before being transferred to their functional destinations. Physiological and pathological stresses induce unfolded and misfolded protein accumulation in the ER, termed as ER stress. Under ER stress, cells initiate a protective response to maintain cellular homeostasis, which is referred as unfolded protein responses. Although protein processing in the ER has been known to regulate cell lifespan and disease, few evidences that prove the role of ER stress in plant immunity have been reported. We investigated the interaction between ER stress and pathogenicity in Arabidopsis by utilizing the N-glycosylation inhibitor, tunicamycin (TM) as an ER stress inducer. TM induced the accumulation of PR1 (pathogenesis-related protein 1) and callose in plant leaves, which are markers for PAMP-triggered immunity (PTI) activation. However, TM pre-treatment increased susceptibility of Arabidopsis to all bacterial pathogens tested. Moreover, TM resulted in cell death of plant leaves with an additive effect to hypersensitive response by bacterial effector proteins, suggesting TM-induced cell death is independent of the effector-triggered immunity. These results imply that TM-induced ER stress weakens overall immune system of plant not a specific immune pathway, probably via disruption of post-translational modification of immune-related proteins in the ER and subsequent cell death by apoptosis or autophagy. This study provides proves for the distinct suppressive effect of ER stress on the plant immune system.
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- 2017
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32. SDE5, a putative RNA export protein, participates in plant innate immunity through a flagellin-dependent signaling pathway in Arabidopsis
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Su Jung Park, Salina Akhter, Woe-Yeon Kim, Sang Yeol Lee, Ji Hyeong Baek, David Mackey, Hunseung Kang, Mohammad Nazim Uddin, Min Gab Kim, Joon-Yung Cha, and Rupak Chakraborty
- Subjects
0106 biological sciences ,0301 basic medicine ,Small interfering RNA ,Arabidopsis ,lcsh:Medicine ,01 natural sciences ,RNA Transport ,Article ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Gene silencing ,Arabidopsis thaliana ,RNA, Messenger ,lcsh:Science ,Disease Resistance ,Genetics ,Multidisciplinary ,Innate immune system ,biology ,Arabidopsis Proteins ,fungi ,lcsh:R ,RNA ,biology.organism_classification ,Plants, Genetically Modified ,Immunity, Innate ,RNA silencing ,030104 developmental biology ,Phenotype ,Mutation ,biology.protein ,lcsh:Q ,Flagellin ,010606 plant biology & botany ,Signal Transduction - Abstract
In eukaryotes, RNA silencing, mediated by small interfering RNAs, is an evolutionarily widespread and versatile silencing mechanism that plays an important role in various biological processes. Increasing evidences suggest that various components of RNA silencing pathway are involved in plant defense machinery against microbial pathogens in Arabidopsis thaliana. Here, we show genetic and molecular evidence that Arabidopsis SDE5 is required to generate an effective resistance against the biotrophic bacteria Pseudomonas syringae pv. tomato DC3000 and for susceptibility to the necrotrophic bacteria Erwinia caratovora pv. caratovora. SDE5, encodes a putative mRNA export factor that is indispensable for transgene silencing and the production of trans-acting siRNAs. SDE5 expression is rapidly induced by exogenous application of phytohormone salicylic acid (SA), methyl jasmonate (MeJA), phytopathogenic bacteria, and flagellin. We further report that SDE5 is involved in basal plant defense and mRNA export. Our genetic data suggests that SDE5 and Nonexpressor of PR Gene1 (NPR1) may contribute to the same SA-signaling pathway. However, SDE5 over-expressing transgenic plant exhibits reduced defense responsive phenotype after flagellin treatment. Taken together, these results support the conclusion that SDE5 contributes to plant innate immunity in Arabidopsis.
- Published
- 2017
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33. Ebola Hemorrhagic Fever Outbreaks: Diagnosis for Effective Epidemic Disease Management and Control
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강보람 ( Boram Kang ), 도나메리멕코이 ( Donah Mary Macoy ), 김효진 ( Hyojin Kim ), and 김민갑 ( Min Gab Kim )
- Subjects
Ebola Hemorrhagic Fever ,biology ,business.industry ,Medicine ,Filoviridae ,business ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Virology ,Biotechnology - Abstract
첫 번째 에볼라 출혈열 발발은 1976년 콩고 민주 공화국과 수단에서 발생했으며, 이후 2014년 서아프리카에서 27,741건, 11,284건의 사망자가 발생했다. 발열은 Filoviridae 계열에 속하며 ssRNA 게놈을 가진 에볼라 바이러스에 의해 발생했다. 바이러스의 알려진 아형은 Bundibugyo ebolavirus, Reston ebolavirus, Sudan ebolavirus, Tai Forest ebolavirus 및 Zaire ebolavirus이다. 역사적으로 에볼라의 주요 발생 지역은 동부 및 중부 아프리카 열대 지방에서 발생했다. 서아프리카에서의 발발로 인해 전세계사회에서 수많은 사망과 공포가 확산되었다. 효과적인 치료와 백신이없는 상황에서 전염병을 관리하고 통제하는 가장 중요한 방법은 정확한 진단을 통해서이다. WHO(세계 보건기구)는 체외진단(IVD) 검사에서 에볼라의 선택과 사용에 관한 긴급 지침을 발표했다. RealStar Ebolavirus Screen RT-PCR 키트 1.0 (Altona), Liferiver-Ebola Virus (EBOV) 실시간 RT-PCR 키트, Xpert 에볼라 검사 및 ReEBOV 항원 검사를 통해 수많은 회사 및 연구 기관에서 진단을 받고 4가지 WHO 조달 승인 진단을 확인했다. 또한, 신속한 검사 키트 Rapid Diagnosis Test (RDT)와 같은 새로운 진단법이 현재 연구 중이다.
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- 2017
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34. Simulation of thin film thickness distribution for thermal evaporation process using a scanning linear source
- Author
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Heui-Jae Pahk and Min-Gab Kim
- Subjects
010302 applied physics ,Materials science ,Pixel ,business.industry ,02 engineering and technology ,Substrate (electronics) ,021001 nanoscience & nanotechnology ,Display resolution ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Distribution (mathematics) ,Optics ,Scientific method ,0103 physical sciences ,OLED ,Optoelectronics ,Electrical and Electronic Engineering ,Thin film ,0210 nano-technology ,Focus (optics) ,business - Abstract
Thermal evaporation process is the main process involved in the production of OLED displays and with the trends toward larger substrate size and display resolution, film thickness uniformity must be carefully controlled in order to implement exact pixel data. To secure stable film thickness uniformity on the substrate area, thin films are deposited on large-area glass substrates via thermal evaporation process using a linear source. We designed a linear source and mathematical model was developed to describe the system with a focus on the linear source. Then, system parameters were determined to guarantee uniform thickness using computer-based simulation, replacing wasteful actual experiments, followed by carrying out experiments based on the determined parameters. After the deposition process, data from the mathematical model and experiments was compared and the resulting agreement was good, verifying the validity of the proposed method. Consequently, by applying the proposed method, display manufacturing process related to thermal evaporation can be controlled within a tight tolerance in order to maximize the production yield rate.
- Published
- 2017
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35. Redox-dependent structural switch and CBF activation confer freezing tolerance in plants
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Eun Seon, Lee, Joung Hun, Park, Seong Dong, Wi, Chang Ho, Kang, Yong Hun, Chi, Ho Byoung, Chae, Seol Ki, Paeng, Myung Geun, Ji, Woe-Yeon, Kim, Min Gab, Kim, Dae-Jin, Yun, Gary, Stacey, and Sang Yeol, Lee
- Subjects
Cold Temperature ,Gene Expression Regulation, Plant ,Cold-Shock Response ,Arabidopsis ,Genes, Plant ,Plants, Genetically Modified ,Oxidation-Reduction ,Transcription Factors - Abstract
The activities of cold-responsive C-repeat-binding transcription factors (CBFs) are tightly controlled as they not only induce cold tolerance but also regulate normal plant growth under temperate conditions
- Published
- 2020
36. Transcriptome Changes Reveal the Molecular Mechanisms of Humic Acid-Induced Salt Stress Tolerance in Arabidopsis
- Author
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Joon-Yung Cha, Gyeong-Im Shin, Gyeongik Ahn, Sang-Ho Kang, Song Yi Jeong, Myung Geun Ji, Min Gab Kim, Jong-Rok Jeon, and Woe-Yeon Kim
- Subjects
0106 biological sciences ,Pharmaceutical Science ,humic acid ,01 natural sciences ,Article ,Analytical Chemistry ,lcsh:QD241-441 ,Transcriptome ,03 medical and health sciences ,transcriptome analysis ,lcsh:Organic chemistry ,Gene Expression Regulation, Plant ,Arabidopsis ,Drug Discovery ,Secondary metabolic process ,Humic acid ,Physical and Theoretical Chemistry ,Gene ,Humic Substances ,salt stress ,030304 developmental biology ,Abiotic component ,chemistry.chemical_classification ,0303 health sciences ,biology ,Arabidopsis Proteins ,Abiotic stress ,Chemistry ,Gene Expression Profiling ,Organic Chemistry ,Biotic stress ,biology.organism_classification ,arabidopsis ,Biochemistry ,Chemistry (miscellaneous) ,Molecular Medicine ,010606 plant biology & botany - Abstract
Humic acid (HA) is a principal component of humic substances, which make up the complex organic matter that broadly exists in soil environments. HA promotes plant development as well as stress tolerance, however the precise molecular mechanism for these is little known. Here we conducted transcriptome analysis to elucidate the molecular mechanisms by which HA enhances salt stress tolerance. Gene Ontology Enrichment Analysis pointed to the involvement of diverse abiotic stress-related genes encoding HEAT-SHOCK PROTEINs and redox proteins, which were up-regulated by HA regardless of salt stress. Genes related to biotic stress and secondary metabolic process were mainly down-regulated by HA. In addition, HA up-regulated genes encoding transcription factors (TFs) involved in plant development as well as abiotic stress tolerance, and down-regulated TF genes involved in secondary metabolic processes. Our transcriptome information provided here provides molecular evidences and improves our understanding of how HA confers tolerance to salinity stress in plants.
- Published
- 2021
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37. Ribosomal P3 protein AtP3B of Arabidopsis acts as both protein and RNA chaperone to increase tolerance of heat and cold stresses
- Author
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Soo In Lee, Sang Yeol Lee, Chang Ho Kang, Dae-Jin Yun, Hun Taek Oh, Min Gab Kim, Woe Yeon Kim, Young Mee Lee, Ganesh M. Nawkar, and Joung Hun Park
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Ribosomal Proteins ,Thermotolerance ,0301 basic medicine ,Physiology ,Arabidopsis ,Plant Science ,Biology ,law.invention ,03 medical and health sciences ,Stress, Physiological ,In vivo ,law ,RNA interference ,Protein biosynthesis ,Electrophoresis, Gel, Two-Dimensional ,Gene knockdown ,Messenger RNA ,Arabidopsis Proteins ,Ribosomal RNA ,biology.organism_classification ,Molecular biology ,Cell biology ,Cold Temperature ,030104 developmental biology ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Recombinant DNA ,Molecular Chaperones - Abstract
The P3 proteins are plant-specific ribosomal P-proteins; however, their molecular functions have not been characterized. In a screen for components of heat-stable high-molecular weight (HMW) complexes, we isolated the P3 protein AtP3B from heat-treated Arabidopsis suspension cultures. By size-exclusion chromatography (SEC), SDS-PAGE and native PAGE followed by immunoblotting with anti-AtP3B antibody, we showed that AtP3B was stably retained in HMW complexes following heat shock. The level of AtP3B mRNA increased in response to both high- and low-temperature stresses. Bacterially expressed recombinant AtP3B protein exhibited both protein and RNA chaperone activities. Knockdown of AtP3B by RNAi made plants sensitive to both high- and low-temperature stresses, whereas overexpression of AtP3B increased tolerance of both conditions. Together, our results suggest that AtP3B protects cells against both high- and low-temperature stresses. These findings provide novel insight into the molecular functions and in vivo roles of acidic ribosomal P-proteins, thereby expanding our knowledge of the protein production machinery.
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- 2016
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38. Comparison and contrast of plant, yeast, and mammalian ER stress and UPR
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Sang Yeol Lee, Min Gab Kim, Rupak Chakraborty, Ji Hyeong Baek, Eun Young Bae, and Woe-Yeon Kim
- Subjects
0301 basic medicine ,endocrine system ,XBP1 ,biology ,Chemistry ,Endoplasmic reticulum ,fungi ,Organic Chemistry ,Cellular homeostasis ,digestive system ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Biochemistry ,Calnexin ,biological sciences ,Unfolded protein response ,biology.protein ,Signal transduction ,Protein disulfide-isomerase ,Calreticulin - Abstract
The endoplasmic reticulum (ER) is a well-characterized protein folding mechanism in eukaryotic organisms. Many secretory and membrane proteins are folded in the ER before they are translocated to their functional destination. Various conditions, such as biotic, abiotic, or physiological stresses, lead to the accumulation of unfolded and misfolded proteins in the ER, resulting in ER stress. In response to ER stress, cells initiate a protective response called the unfolded protein response (UPR) to maintain cellular homeostasis. Previous studies suggest that inositol-requiring kinase 1 (IRE1) is a universal ER stress sensor in yeast, mammals, and plants. IRE1-mediated splicing of UPR transducers, such as HAC1, XBP1, and bZIP60, triggers the UPR in yeast, mammals, and plants, respectively. In mammals, activated transcription factor 6 and double stranded RNA-activated protein kinase-like ER kinases are involved in the UPR. In plants, the additional UPR transducers bZIP28 and bZIP17 are activated by Golgi-localized S1P and S2P proteases. Subsequently, these UPR transducers are exported to the nucleus and upregulate the expression of UPR-responsive genes encoding BiP, calreticulin, calnexin, protein disulfide isomerase, and glucose-regulated protein 94 to decrease the amount of misfolded proteins and induce endoplasmic reticulum-associated degradation. In plants, the UPR signaling pathway plays an important role in ER homeostasis and normal biological processes; however, the molecular mechanisms of the UPR in plants remain poorly understood. This paper provides an overview of the regulatory and signaling mechanisms of the UPR across kingdoms. In addition, the emerging role of the UPR in plant physiology and defense response will be discussed.
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- 2016
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39. Structural variation of humic-like substances and its impact on plant stimulation: Implication for structure-function relationship of soil organic matters
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Ho Young Yoon, Hae Jin Jeong, Kyoung-Soon Jang, Min Gab Kim, Joon-Yung Cha, Woe-Yeon Kim, Jong-Rok Jeon, and Mira Choi
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chemistry.chemical_classification ,Catechol ,Environmental Engineering ,010504 meteorology & atmospheric sciences ,Stereochemistry ,Carboxylic acid ,Polycyclic aromatic hydrocarbon ,Plants ,010501 environmental sciences ,Carbon-13 NMR ,Biotic stress ,01 natural sciences ,Pollution ,Humus ,Soil ,Structure-Activity Relationship ,chemistry.chemical_compound ,chemistry ,Spectroscopy, Fourier Transform Infrared ,Vanillic acid ,Environmental Chemistry ,Amine gas treating ,Waste Management and Disposal ,Humic Substances ,0105 earth and related environmental sciences - Abstract
Here, five aromatic monomers, one bearing a long alkyl chain [3-pentadecylphenol (3-PP)], the second bearing a polycyclic aromatic hydrocarbon [dihydroxynaphthalene (DHN)], the third bearing an organic amine [ l -3,4-dihydroxyphenylalanine ( l -DOPA)], the fourth bearing a carboxylic acid [vanillic acid (VA)], and the fifth bearing a phenol [catechol (CA)] were oxidatively coupled to produce four humic-like substances (3-PP, DHN, l -DOPA, and CAVA products) to mimic the diverse organic architectures of natural humus. Analysis using several methods, including SEM, EPR, elemental analysis, FT-IR-ATR, 13C NMR and anti-oxidant capability, revealed that each of the monomeric structures was well incorporated into the corresponding humic-like substances. Seed germination acceleration and NaCl-involved abiotic stress resistance of Arabidopsis thaliana were then tested to determine whether the different structures resulted in different levels of plant stimulation. The l -DOPA, CAVA and DHN-based materials showed enhanced stimulatory activities compared with no treatment, whereas the effects of the 3-PP-based materials were meager. Interestingly, high-resolution (15 T) ESI FT-ICR mass spectrometry-based van Krevelen diagrams clearly showed that the presence of molecules with H/C and O/C ratios ranging from 0.5 to 1.0 and 0.2 to 0.4, respectively, could be connected with such biological actions. Here, the l -DOPA sample showed the highest content of such molecules, followed by the CAVA, DHN and 3-PP samples. Next, the ability of l -DOPA and CAVA products to induce resistance in A. thaliana to a pathogen-related biotic stress was tested to confirm whether the proposed molecular features are associated with multi-stimulatory actions on plants. The expression level of pathogenesis-related protein 1 and inspection of plant morphology clearly revealed that both the l -DOPA and CAVA products stimulate plants to respond to biotic stresses. Size-exclusion chromatography together with NMR and IR data of both the materials strongly suggests that lignin-like supramolecular assemblages play an important role in versatile biological activities of humus.
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- 2020
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40. The Physiological Functions of Universal Stress Proteins and Their Molecular Mechanism to Protect Plants From Environmental Stresses
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Yong Hun Chi, Sung Sun Koo, Hun Taek Oh, Eun Seon Lee, Joung Hun Park, Kieu Anh Thi Phan, Seong Dong Wi, Su Bin Bae, Seol Ki Paeng, Ho Byoung Chae, Chang Ho Kang, Min Gab Kim, Woe-Yeon Kim, Dae-Jin Yun, and Sang Yeol Lee
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0106 biological sciences ,0301 basic medicine ,Cell signaling ,molecular mechanism of USPs ,Context (language use) ,Computational biology ,Plant Science ,Review ,Biology ,lcsh:Plant culture ,01 natural sciences ,03 medical and health sciences ,universal stress protein ,Arabidopsis ,lcsh:SB1-1110 ,external stress ,Gene ,Abiotic stress ,biotechnological application ,technology, industry, and agriculture ,food and beverages ,Biochemical Activity ,biology.organism_classification ,equipment and supplies ,multi-functional roles ,030104 developmental biology ,abiotic/biotic defense signaling ,Thioredoxin ,Function (biology) ,hormones, hormone substitutes, and hormone antagonists ,010606 plant biology & botany - Abstract
Since the original discovery of a Universal Stress Protein (USP) in Escherichia coli, a number of USPs have been identified from diverse sources including archaea, bacteria, plants, and metazoans. As their name implies, these proteins participate in a broad range of cellular responses to biotic and abiotic stresses. Their physiological functions are associated with ion scavenging, hypoxia responses, cellular mobility, and regulation of cell growth and development. Consistent with their roles in resistance to multiple stresses, USPs show a wide range of structural diversity that results from the diverse range of other functional motifs fused with the USP domain. As well as providing structural diversity, these catalytic motifs are responsible for the diverse biochemical properties of USPs and enable them to act in a number of cellular signaling transducers and metabolic regulators. Despite the importance of USP function in many organisms, the molecular mechanisms by which USPs protect cells and provide stress resistance remain largely unknown. This review addresses the diverse roles of USPs in plants and how the proteins enable plants to resist against multiple stresses in ever-changing environment. Bioinformatic tools used for the collection of a set of USPs from various plant species provide more than 2,100 USPs and their functional diversity in plant physiology. Data from previous studies are used to understand how the biochemical activity of plant USPs modulates biotic and abiotic stress signaling. As USPs interact with the redox protein, thioredoxin, in Arabidopsis and reactive oxygen species (ROS) regulates the activity of USPs, the involvement of USPs in redox-mediated defense signaling is also considered. Finally, this review discusses the biotechnological application of USPs in an agricultural context by considering the development of novel stress-resistant crops through manipulating the expression of USP genes.
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- 2018
41. N-Glycosylation process in both ER and Golgi plays pivotal role in plant immunity
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Sang Yeol Lee, Byeong Sul Kang, Rupak Chakraborty, Duk-Ju Hwang, Joon-Yung Cha, Ji Hyeong Baek, Donah Mary Macoy, Woe-Yeon Kim, Yeon-Hee Lee, and Min Gab Kim
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biology ,Effector ,Endoplasmic reticulum ,fungi ,Oligosaccharyltransferase ,food and beverages ,Plant Science ,Golgi apparatus ,biology.organism_classification ,symbols.namesake ,Biochemistry ,N-linked glycosylation ,Arabidopsis ,symbols ,Arabidopsis thaliana ,Effector-triggered immunity - Abstract
N-glycosylation of proteins in the endoplasmic reticulum (ER) and Golgi apparatus is essential for protein posttranslational modification in plant cells. Although the Nglycosylation in the ER and Golgi apparatus has been known to regulate protein quality control, salt stress and cellulose biosynthesis, few evidences related to the roles of Nglycosylation in plant immunity have been reported. Arabidopsis thaliana mutants defective in N-glycosylation, namely, staurosporin and temperature sensitive 3a and 3b (stt3a and stt3b) of oligosaccharyltransferase subunit and complex glycan 1 (cgl1) in Golgi apparatus were used in this study. Results showed that Arabidopsis mutant stt3a was more susceptible against Pseudomonas syringae pv. tomato DC3000 (Pst) and Erwinia carotovora subsp. carotovora (ECC). In addition, stt3a was less resistant against Pst harboring effector protein AvrRpm1 compared to the wild type plant. However stt3b showed less significant changes in susceptibility against these three bacterial strains. These results infer the functions of STT3B in N-glycosylation that STT3B is likely supplementary to the main STT3A. Flg22-induced PR1 accumulation and callose deposition were blocked in Nglycosylation mutants, implying that N-glycosylation is involved in the PAMP-triggered immunity. However, Nglycosylation was not absolutely required for AvrRpm1- and AvrRpt2-triggered immunity. STT3A-binding proteins were searched in order to understand the role of STT3A in plant immunity. Ubiquitin-conjugating enzyme E2s, UBC7 and UBC13, were found to be binding proteins of STT3A by yeast two-hybrid assay.
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- 2015
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42. Biosynthesis, physiology, and functions of hydroxycinnamic acid amides in plants
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Sang Yeol Lee, Min Gab Kim, Woe-Yeon Kim, and Donah Mary Macoy
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chemistry.chemical_classification ,Abiotic stress ,fungi ,food and beverages ,Physiology ,Phenylalanine ,Plant Science ,Phenylalanine ammonia-lyase ,Biology ,Hydroxycinnamic acid ,Tyrosine decarboxylase ,chemistry.chemical_compound ,Biochemistry ,Biosynthesis ,chemistry ,Transferase ,Tyrosine ,Biotechnology - Abstract
The study of hydroxycinnamic acid amides (HCAAs) which are a group of secondary metabolites has been an interesting one and has become one of the important researches at present. Accumulation of several plant amides was detected in various plants, which play important role in plant growth and development. This paper aims to review the biosynthesis, physiology, and functions of HCAA accumulation in plants during plant growth and development as well as in response to senescence and drought stress. HCAAs are secondary metabolites derived from phenylalanine and tyrosine pathway. Phenylalanine ammonia lyase (PAL) and 4-coumarate CoA ligase (4CL) hydroxycinnamoyl-CoA:tyramine N-(hydroxycinnamoyl) transferase (THT) and tyrosine decarboxylase (TyDC) are essential enzymes for HCAA biosynthesis. HCAAs contribute to many developmental processes as well as plant responses against biotic and abiotic stress responses. However, there is a need to specifically investigate the role of many HCAAs in view of plant molecular biology since it is still not fully conceptualized and explained at present.
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- 2015
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43. Development of in vitro HSP90 foldase chaperone assay using a GST-fused Real-substrate, ZTL (ZEITLUPE)
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Woe-Yeon Kim, Mi Ri Kim, Min Gab Kim, and Joon-Yung Cha
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biology ,Plant Science ,biology.organism_classification ,Hsp90 ,law.invention ,Biochemistry ,law ,Chaperone (protein) ,Arabidopsis ,Foldase ,biology.protein ,Recombinant DNA ,Transferase ,Denaturation (biochemistry) ,Protein folding - Abstract
Protein folding is one of the essential and fundamental processes involved in all living organisms wherein Heat-Shock Protein 90 (HSP90) served as a chaperone which plays important function in protein folding and further promotes refolding of denatured proteins. There are over six hundred identified substrates of HSP90 at present; however, there is a need to develop a specific folding assay method to test its in vitro foldase activity in case of difficulty in substrate activity measurement in vitro. In previous studies, it has been reported that HSP90 is necessary for the stabilization of ZEITLUPE (ZTL) which plays in the circadian clock and photomorphogenesis in Arabidopsis (Kim et al. 2011). Rhythmic oscillations of ZTL protein might be caused by denaturation and stabilization, thus, refolding activity of HSP90 is possibly involved in the oscillations of ZTL protein. However, the question whether HSP90 indeed promotes refolding of ZTL or not has not yet identified and therefore needs to be investigated. Recombinant glutathione-S transferase (GST) fused-ZTL in bacteria was produced and purified as the soluble GST-ZTL through treatments of both sarkosyl and Triton-X100 as ionic and nonionic detergents, respectively. Upon heat (45°C) treatment, the GST activity of GST-ZTL decreased significantly. After the 3 h heat-induced denaturation of GST-ZTL, the refolding of denatured GST-ZTL was enhanced upon addition of HSP90 in a dose-dependent manner. The results from this study showed that recombinant GST-fused protein can be possibly used for in vitro protein refolding assay method. Moreover, results revealed that Arabidopsis HSP90 can efficiently refolds the denatured GST-ZTL in vitro.
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- 2015
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44. Biotic stress related functions of hydroxycinnamic acid amide in plants
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Woe-Yeon Kim, Donah Mary Macoy, Min Gab Kim, and Sang Yeol Lee
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Abiotic component ,chemistry.chemical_classification ,Abiotic stress ,fungi ,food and beverages ,Plant Immunity ,Plant Science ,Biology ,Biotic stress ,Plant disease resistance ,Hydroxycinnamic acid ,Plant ecology ,Cell wall ,chemistry ,Biochemistry ,Botany - Abstract
The study of hydroxycinnamic acid amides (HCAAs) which is a group of secondary metabolites in plants have been an interesting research subject and become of greater importance at present. Several plant amides have shown important role in plant-pathogen interaction and also in different biotic and abiotic stresses. This review paper aims to give a thorough understanding on the emerging functions of HCAA accumulation in plants related to pathogen infections. In addition, this paper discusses the current biochemical mechanisms on the formation of various classes of HCAAs in relation to plant immunity against pathogens. HCAAs contribute to several developmental processes as well as both biotic and abiotic stress responses which remains unclear up to date and there is a need to further investigate it from different plant species of various tissues or organs and cell cultures.
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- 2015
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45. An insulin-binding protein from the venom of a solitary wasp Eumenes pomiformis binds to apolipophorin III in lepidopteran hemolymph
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Min Gab Kim, Si Hyeock Lee, Ji Hyeong Baek, and Woe-Yeon Kim
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0301 basic medicine ,Time Factors ,Wasp Venoms ,Wasps ,Venom ,Spodoptera ,Toxicology ,03 medical and health sciences ,Hemolymph ,Exigua ,Animals ,030102 biochemistry & molecular biology ,biology ,Binding protein ,fungi ,Anatomy ,biology.organism_classification ,Apolipoproteins ,030104 developmental biology ,Hunting wasp ,Biochemistry ,Larva ,Insect Proteins ,Food Deprivation ,Apolipophorin III - Abstract
EpIBP, an insulin-like peptide-binding protein, is a major protein component of the venom of a solitary hunting wasp, Eumenes pomiformis. To evaluate the bioactivity, bacteria-expressed EpIBP was injected into Spodoptera exigua larvae, resulting in a higher survival rate and reduced loss of body weight under starvation conditions than control larvae. EpIBP was found to interact with apolipophorin III (apoLp III), implying that EpIBP might function by altering the apoLp III-mediated metabolism of prey.
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- 2016
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46. Perturbation of Maize Phenylpropanoid Metabolism by an AvrE Family Type III Effector from Pantoea stewartii
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Irene N. Gentzel, Wanying Zhao, Min Gab Kim, Stephen O. Opiyo, Joshua J. Blakeslee, Jinshan Lin, Seung-Mann Paek, David Mackey, Alvaro L. Pérez-Quintero, Jo Ann E. Asselin, David L. Coplin, and Doris R. Majerczak
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Transcription, Genetic ,Propanols ,Physiology ,Mutant ,Tyramine ,Virulence ,Shikimic Acid ,Plant Science ,Models, Biological ,Zea mays ,Virulence factor ,Microbiology ,Bacterial Proteins ,Gene Expression Regulation, Plant ,Genetics ,Plant defense against herbivory ,Secondary metabolism ,Bacterial Secretion Systems ,Phenylalanine Ammonia-Lyase ,Phenylpropanoid ,biology ,Pantoea ,Effector ,food and beverages ,Articles ,biology.organism_classification ,Gene Ontology ,Biochemistry ,Seedlings ,Mutation ,Biological Assay ,Genome, Plant - Abstract
AvrE family type III effector proteins share the ability to suppress host defenses, induce disease-associated cell death, and promote bacterial growth. However, despite widespread contributions to numerous bacterial diseases in agriculturally important plants, the mode of action of these effectors remains largely unknown. WtsE is an AvrE family member required for the ability of Pantoea stewartii ssp. stewartii (Pnss) to proliferate efficiently and cause wilt and leaf blight symptoms in maize (Zea mays) plants. Notably, when WtsE is delivered by a heterologous system into the leaf cells of susceptible maize seedlings, it alone produces water-soaked disease symptoms reminiscent of those produced by Pnss. Thus, WtsE is a pathogenicity and virulence factor in maize, and an Escherichia coli heterologous delivery system can be used to study the activity of WtsE in isolation from other factors produced by Pnss. Transcriptional profiling of maize revealed the effects of WtsE, including induction of genes involved in secondary metabolism and suppression of genes involved in photosynthesis. Targeted metabolite quantification revealed that WtsE perturbs maize metabolism, including the induction of coumaroyl tyramine. The ability of mutant WtsE derivatives to elicit transcriptional and metabolic changes in susceptible maize seedlings correlated with their ability to promote disease. Furthermore, chemical inhibitors that block metabolic flux into the phenylpropanoid pathways targeted by WtsE also disrupted the pathogenicity and virulence activity of WtsE. While numerous metabolites produced downstream of the shikimate pathway are known to promote plant defense, our results indicate that misregulated induction of phenylpropanoid metabolism also can be used to promote pathogen virulence.
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- 2015
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47. Humic Acid Confers HIGH-AFFINITY K+ TRANSPORTER 1-Mediated Salinity Stress Tolerance in Arabidopsis
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Laila, Khaleda, Hee Jin, Park, Dae-Jin, Yun, Jong-Rok, Jeon, Min Gab, Kim, Joon-Yung, Cha, and Woe-Yeon, Kim
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Salinity ,calcium ,Symporters ,Arabidopsis Proteins ,Arabidopsis ,food and beverages ,Salt Tolerance ,humic acid ,Plants, Genetically Modified ,Article ,HKT1 ,Cation Transport Proteins ,Humic Substances ,salt stress - Abstract
Excessive salt disrupts intracellular ion homeostasis and inhibits plant growth, which poses a serious threat to global food security. Plants have adapted various strategies to survive in unfavorable saline soil conditions. Here, we show that humic acid (HA) is a good soil amendment that can be used to help overcome salinity stress because it markedly reduces the adverse effects of salinity on Arabidopsis thaliana seedlings. To identify the molecular mechanisms of HA-induced salt stress tolerance in Arabidopsis, we examined possible roles of a sodium influx transporter HIGH-AFFINITY K+ TRANSPORTER 1 (HKT1). Salt-induced root growth inhibition in HKT1 overexpressor transgenic plants (HKT1-OX) was rescued by application of HA, but not in wild-type and other plants. Moreover, salt-induced degradation of HKT1 protein was blocked by HA treatment. In addition, the application of HA to HKT1-OX seedlings led to increased distribution of Na+ in roots up to the elongation zone and caused the reabsorption of Na+ by xylem and parenchyma cells. Both the influx of the secondary messenger calcium and its cytosolic release appear to function in the destabilization of HKT1 protein under salt stress. Taken together, these results suggest that HA could be applied to the field to enhance plant growth and salt stress tolerance via post-transcriptional control of the HKT1 transporter gene under saline conditions.
- Published
- 2017
48. The phytotoxin coronatine is a multifunctional component of the virulence armament of Pseudomonas syringae
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Min Gab Kim, Mikiko Shimada, Xueqing Geng, David Mackey, and Lin Jin
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congenital, hereditary, and neonatal diseases and abnormalities ,Pseudomonas syringae ,Secondary Metabolism ,Virulence ,Review ,Plant Science ,Biology ,Coronatine ,Microbiology ,chemistry.chemical_compound ,Phytotoxin ,Plant defense ,Type III effectors ,Plant hormones ,Genetics ,Plant defense against herbivory ,Hormone crosstalk ,Plant Immunity ,cardiovascular diseases ,Amino Acids ,Secondary metabolism ,Plant Diseases ,Effector ,Jasmonic acid ,food and beverages ,respiratory system ,respiratory tract diseases ,Indenes ,chemistry - Abstract
Plant pathogens deploy an array of virulence factors to suppress host defense and promote pathogenicity. Numerous strains of Pseudomonas syringae produce the phytotoxin coronatine (COR). A major aspect of COR function is its ability to mimic a bioactive jasmonic acid (JA) conjugate and thus target the JA-receptor COR-insensitive 1 (COI1). Biological activities of COR include stimulation of JA-signaling and consequent suppression of SA-dependent defense through antagonistic crosstalk, antagonism of stomatal closure to allow bacterial entry into the interior of plant leaves, contribution to chlorotic symptoms in infected plants, and suppression of plant cell wall defense through perturbation of secondary metabolism. Here, we review the virulence function of COR, including updates on these established activities as well as more recent findings revealing COI1-independent activity of COR and shedding light on cooperative or redundant defense suppression between COR and type III effector proteins.
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- 2014
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49. Direct and Indirect Targeting of PP2A by Conserved Bacterial Type-III Effector Proteins
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Seung-Mann Paek, Wanying Zhao, Rosemary Hage, Jaricelis Soto-Hernández, Sang Yeol Lee, David L. Coplin, David Mackey, Charles Boone, Min Gab Kim, Lin Jin, and Jong Hyun Ham
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0106 biological sciences ,0301 basic medicine ,Leaves ,Cell Membranes ,Arabidopsis ,Pseudomonas syringae ,Plant Science ,01 natural sciences ,Solanum lycopersicum ,Type III Secretion Systems ,Arabidopsis thaliana ,Protein Phosphatase 2 ,lcsh:QH301-705.5 ,Cell Death ,Virulence ,biology ,Plant Bacterial Pathogens ,Effector ,Plant Anatomy ,Agriculture ,Plants ,Cell biology ,Cell Processes ,Cellular Structures and Organelles ,Research Article ,lcsh:Immunologic diseases. Allergy ,Pectobacterium ,Arabidopsis Thaliana ,Protein subunit ,Immunology ,Plant Pathogens ,Crops ,Brassica ,Research and Analysis Methods ,Real-Time Polymerase Chain Reaction ,Zea mays ,Microbiology ,03 medical and health sciences ,Model Organisms ,Bacterial Proteins ,Plant and Algal Models ,Two-Hybrid System Techniques ,Virology ,Tobacco ,Genetics ,Immunoprecipitation ,Grasses ,Molecular Biology ,Plant Diseases ,Pantoea ,Organisms ,Fungi ,Biology and Life Sciences ,Membrane Proteins ,Cell Biology ,Plant Pathology ,biology.organism_classification ,Yeast ,Maize ,030104 developmental biology ,Membrane protein ,lcsh:Biology (General) ,Seedlings ,Parasitology ,Gram-Negative Bacterial Infections ,lcsh:RC581-607 ,Crop Science ,Cereal Crops ,010606 plant biology & botany - Abstract
Bacterial AvrE-family Type-III effector proteins (T3Es) contribute significantly to the virulence of plant-pathogenic species of Pseudomonas, Pantoea, Ralstonia, Erwinia, Dickeya and Pectobacterium, with hosts ranging from monocots to dicots. However, the mode of action of AvrE-family T3Es remains enigmatic, due in large part to their toxicity when expressed in plant or yeast cells. To search for targets of WtsE, an AvrE-family T3E from the maize pathogen Pantoea stewartii subsp. stewartii, we employed a yeast-two-hybrid screen with non-lethal fragments of WtsE and a synthetic genetic array with full-length WtsE. Together these screens indicate that WtsE targets maize protein phosphatase 2A (PP2A) heterotrimeric enzyme complexes via direct interaction with B’ regulatory subunits. AvrE1, another AvrE-family T3E from Pseudomonas syringae pv. tomato strain DC3000 (Pto DC3000), associates with specific PP2A B’ subunit proteins from its susceptible host Arabidopsis that are homologous to the maize B’ subunits shown to interact with WtsE. Additionally, AvrE1 was observed to associate with the WtsE-interacting maize proteins, indicating that PP2A B’ subunits are likely conserved targets of AvrE-family T3Es. Notably, the ability of AvrE1 to promote bacterial growth and/or suppress callose deposition was compromised in Arabidopsis plants with mutations of PP2A genes. Also, chemical inhibition of PP2A activity blocked the virulence activity of both WtsE and AvrE1 in planta. The function of HopM1, a Pto DC3000 T3E that is functionally redundant to AvrE1, was also impaired in specific PP2A mutant lines, although no direct interaction with B’ subunits was observed. These results indicate that sub-component specific PP2A complexes are targeted by bacterial T3Es, including direct targeting by members of the widely conserved AvrE-family., Author Summary Gram-negative bacterial pathogens employ type-III effector (T3E) proteins to suppress host immunity and promote disease symptoms. AvrE-family T3Es, which are widely distributed among plant-pathogenic bacteria, suppress host defense responses and also contribute to water-soaking, which is perhaps the most common symptom of bacterial diseases and likely results in the release of nutrients from host cells to promote pathogen growth. Despite the central virulence functions of AvrE-family T3Es, their mode of action remains enigmatic largely due to their cell toxicity. We report here that two AvrE-family T3Es, WtsE from the maize pathogen Pantoea stewartii subsp. stewartii and AvrE1 from the tomato and Arabidopsis pathogen Pseudomonas syringae pv. tomato, each target protein phosphatase 2A (PP2A) complexes in susceptible hosts via direct interaction/association with specific B’ regulatory subunits. Chemical inhibitors were used to demonstrate that PP2A activity is required for the virulence functions of WtsE and AvrE1. PP2A isoform specificity was also tested using mutants of Arabidopsis. More generally, PP2A subunits regulate, both positively and negatively, rapid pattern-triggered immune responses in Arabidopsis. Thus, bacterial T3Es target sub-component specific PP2A complexes to manipulate host immunity and cause disease symptoms during infection.
- Published
- 2016
50. Over-expression of rice leucine-rich repeat protein results in activation of defense response, thereby enhancing resistance to bacterial soft rot in Chinese cabbage
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Shin Cheol Bae, Sang Ryeol Park, Hyo Sun Kim, Young Ho Park, Changhyun Choi, Eun Mi Park, Hong Jae Park, Il-Pyung Ahn, Duk-Ju Hwang, and Min Gab Kim
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Transgene ,Protein domain ,Agrobacterium ,Pectobacterium carotovorum ,Plant Science ,Biology ,Plant disease resistance ,Leucine-rich repeat ,Leucine-Rich Repeat Proteins ,Microbiology ,Bacterial soft rot ,Transformation, Genetic ,Gene Expression Regulation, Plant ,Stress, Physiological ,Botany ,Transgenes ,Disease Resistance ,Plant Diseases ,Plant Proteins ,Brassica rapa ,Proteins ,food and beverages ,Oryza ,General Medicine ,Plants, Genetically Modified ,biology.organism_classification ,Transformation (genetics) ,Heterologous expression ,Agronomy and Crop Science - Abstract
Pectobacterium carotovorum subsp. carotovorum causes soft rot disease in various plants, including Chinese cabbage. The simple extracellular leucine-rich repeat (eLRR) domain proteins have been implicated in disease resistance. Rice leucine-rich repeat protein (OsLRP), a rice simple eLRR domain protein, is induced by pathogens, phytohormones, and salt. To see whether OsLRP enhances disease resistance to bacterial soft rot, OsLRP was introduced into Chinese cabbage by Agrobacterium-mediated transformation. Two independent transgenic lines over-expressing OsLRP were generated and further analyzed. Transgenic lines over-expressing OsLRP showed enhanced disease resistance to bacterial soft rot compared to non-transgenic control. Bacterial growth was retarded in transgenic lines over-expressing OsLRP compared to non-transgenic controls. We propose that OsLRP confers enhanced resistance to bacterial soft rot. Monitoring expression of defense-associated genes in transgenic lines over-expressing OsLRP, two different glucanases and Brassica rapa polygalacturonase inhibiting protein 2, PDF1 were constitutively activated in transgenic lines compared to non-transgenic control. Taken together, heterologous expression of OsLRP results in the activation of defense response and enhanced resistance to bacterial soft rot.
- Published
- 2012
- Full Text
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