117 results on '"Marco Oliverio"'
Search Results
2. Voluntary fishing logbooks are essential for unveiling unsustainable bycatch levels and appropriate mitigating measures: The case of sea turtles in the Gulf of Manfredonia, Adriatic Sea
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Giulia Baldi, Pasquale Salvemini, Anna Pia Attanasio, Teresa Mastrapasqua, Anna Maria Pepe, Simona A. Ceriani, Marco Oliverio, and Paolo Casale
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Ecology ,Aquatic Science ,Nature and Landscape Conservation - Published
- 2022
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3. Neither slugs nor snails: a molecular reappraisal of the gastropod family Velutinidae
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Giulia Fassio, Matteo Stefani, Valeria Russini, Barbara Buge, Philippe Bouchet, Nancy Treneman, Manuel António E Malaquias, Stefano Schiaparelli, Maria Vittoria Modica, and Marco Oliverio
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cryptic species ,host–parasite systems ,Insecta ,Arthropoda ,Gastropoda ,Biodiversity ,new genera ,taxonomic revision ,Littorinimorpha ,Coleoptera ,Mollusca ,Animalia ,Animal Science and Zoology ,Lampyridae ,Velutinidae ,Ecology, Evolution, Behavior and Systematics ,mimicry ,molecular systematics ,biodiversity ,Taxonomy - Abstract
The systematics of the marine mollusc family Velutinidae has long been neglected by taxonomists, mainly because their often internal and fragile shells offer no morphological characters. Velutinids are usually undersampled owing to their cryptic mantle coloration on the solitary, social or colonial ascidians on which they feed and lay eggs. In this study, we address the worldwide diversity and phylogeny of Velutinidae based on the largest molecular dataset (313 specimens) to date, accounting for > 50% of the currently accepted genera, coupled with morphological and ecological data. Velutinids emerge as a diverse group, encompassing four independent subfamily-level lineages, two of which are newly described herein: Marseniopsinae subfam. nov. and Hainotinae subfam. nov. High diversity was found at genus and species levels, with two newly described genera (Variolipallium gen. nov. and Pacifica gen. nov.) and ≥ 86 species in the assayed dataset, 58 of which are new to science (67%). Velutinidae show a remarkable morphological plasticity in shell morphology, mantle extension and chromatic patterns. This variability is likely to be the result of different selective forces, including habitat, depth and trophic interactions.
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- 2022
4. From Shells in House Cabinets to Structured Data for Research: The mobilization of frozen biodiversity data in Italy
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Arianna Giannini and Marco Oliverio
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natural history collections ,big data ,Mollusca ,General Medicine ,marine molluscs ,database - Abstract
In recent decades, technological development has accelerated exponentially, and with it the volume of data that can be accumulated and processed (Runting et al. 2020). The big data revolution has enabled great steps forward in natural sciences, allowing the study of global changes at different scales (Nelson and Ellis 2018). Today, biodiversity research has focused more on data quantity than quality, leading to a shift in the collecting methods of primary biodiversity data from specimen-based to observation-based. Some authors argued that the increasing disconnection of occurrence data from actual specimens has some aspects of suboptimality that cannot be ignored, despite also having many benefits (Troudet et al. 2018). In this context, Natural History Collections (NHCs) contain data of potential high quality when specimens are collected and identified by experts; however, most NHCs' data are not databased, records must be digitized to become usable by researchers and other stakeholders, and not all owners have the tools to do so (Fig. 1). In Italy—as in other countries—many specimens of invertebrates are stored in private collections, the majority not databased, and even when they are digitized, they rarely follow international standards, such as Darwin Core - DwC (Darwin Core Task Group 2009). We call this type of data frozen. The production of an accessible nationwide database derived from the digitization of these records could significantly support research and national conservation strategies. This project aims to support the databasing of private collections in Italy and collect their records in one structured geo- and chrono-referenced database of biodiversity data in line with international standards. We have chosen marine molluscs as a pilot taxon, based on three criteria: 1) existence of an updated checklist of the Italian fauna (Renda et al. 2022); 2) existence of an updated taxonomic reference to serve as a thesaurus for the database, namely MolluscaBase (MolluscaBase eds. 2022) and the World Register of Marine Species - WoRMS (WoRMS Editorial Board 2022); 3) management and conservation relevance of the taxon, based on classic criteria for selecting indicator taxa (e.g., Pearson 1994). For data collection, we built an empty template Excel spreadsheet, for ease of use by the terminal operator. The template file contains 21 fields, summarized in Fig. 2, and it is accompanied by other support files (Fig. 3). As of 01 Jul 2022, we had contacted only a small number of specialists, collecting >9500 records. While data are collected from different collections, records will be reorganized into a single database according to the DwC standard. Each record will then be georeferenced following Zermoglio et al. (2020)’s protocol and it will be traceable through a system of Persistent Identifiers. By this project, we aim to foster the mobilization of frozen biodiversity data through a process of digitization and integration of different sources. We expect to produce a database containing a large number of records in a few years, making it available for research and biodiversity management.
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- 2022
5. Description of Alvania rominae n. sp. from the Mediterranean Sea (Mollusca Gastropoda Rissoidae)
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Bruno Amati, Marco Oliverio, and Daniele Trono
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Mediterranean sea ,biology ,Gastropoda ,Rissoidae ,Zoology ,General Medicine ,Alvania ,biology.organism_classification ,Mollusca - Published
- 2020
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6. Increase in knowledge of the marine gastropod fauna of Lebanon since the 19th century
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Fabio Crocetta, Marco Oliverio, Helmut Zibrowius, and Ghazi Bitar
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0106 biological sciences ,Ecology ,eastern mediterranean ,010604 marine biology & hydrobiology ,Fauna ,geographic records ,Community structure ,Biodiversity ,Biota ,15. Life on land ,Aquatic Science ,Oceanography ,01 natural sciences ,taxonomy ,Type (biology) ,Geography ,Mediterranean sea ,Taxon ,Habitat ,14. Life underwater ,biogeography - Abstract
We hereby review and update the current state of knowledge on the Lebanese gastropod biota based on published literature and the study of new samples. Review of 1543 published records yielded 237 gastropod taxa. New samples from the Lebanese coast yielded 2414 living specimens and 4003 empty shells, belonging to 188 taxa. Forty-six of the taxa are new records for the Lebanese fauna, bringing the gastropods known from Lebanon to 283 species. Literature records also included 71 nominal gastropod taxa based on type material from Lebanon, including 3 genera, 8 species, and 60 subspecific units. Of these, only 13 are retained as available. Of the 283 gastropod taxa known from Lebanon, 41 are aliens and 7 are cryptogenic. The majority of nonnative taxa were recorded only during the last decades, particularly from 1980 to 2019. Results from the present study question the common assumption that this region has extremely low native diversity. The flora and fauna of the Lebanese coast remain relatively unexplored and our data support the perception that several formerly abundant species have recently collapsed. Despite these advances, the lack of scientific data on biodiversity and community structure of Lebanese habitats and geographic zones is likely to hamper conservation actions and legal protection of critical species. We therefore recommend additional field and laboratory research to increase knowledge of both taxonomic composition and species' distributions in Lebanon and elsewhere in the easternmost Mediterranean Sea.
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- 2020
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7. Re-evaluating the case for poecilogony in the gastropod Planaxis sulcatus (Cerithioidea, Planaxidae)
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Giulia Fassio, Philippe Bouchet, Marco Oliverio, and Ellen E. Strong
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Viviparity ,Ecology ,Evolution ,Gastropoda ,Reproductive biology ,Bayes Theorem ,General Medicine ,RNA, Ribosomal, 16S ,Larval development ,Cryptic species ,QH359-425 ,Animals ,Indian Ocean ,Phylogeny ,QH540-549.5 - Abstract
Background Planaxis sulcatus has been touted as a textbook example of poecilogony, with members of this wide-ranging Indo-Pacific marine gastropod said to produce free-swimming veligers as well as brooded juveniles. A recent paper by Wiggering et al. (BMC Evol Biol 20:76, 2020) assessed a mitochondrial gene phylogeny based on partial COI and 16S rRNA sequences for 31 individuals supplemented by observations from the brood pouch of 64 mostly unsequenced individuals. ABGD and bGYMC supported three reciprocally monophyletic clades, with two distributed in the Indo-Pacific, and one restricted to the northern Indian Ocean and Red Sea. Given an apparent lack of correlation between clade membership and morphological differentiation or mode of development, the reported 3.08% maximum K2P model-corrected genetic divergence in COI among all specimens was concluded to represent population structuring. Hence, the hypothesis that phylogenetic structure is evidence of cryptic species was rejected and P. sulcatus was concluded to represent a case of geographic poecilogony. Results Our goal was to reassess the case for poecilogony in Planaxis sulcatus with a larger molecular dataset and expanded geographic coverage. We sequenced an additional 55 individuals and included published and unpublished sequence data from other sources, including from Wiggering et al. Our dataset comprised 108 individuals (88 COI, 81 16S rRNA) and included nine countries unrepresented in the previous study. The expanded molecular dataset yielded a maximum K2P model-corrected genetic divergence among all sequenced specimens of 12.09%. The value of 3.08% erroneously reported by Wiggering et al. is the prior maximal distance value that yields a single-species partition in ABGD, and not the maximum K2P intraspecific divergence that can be calculated for the dataset. The bGMYC analysis recognized between two and six subdivisions, while the best-scoring ASAP partitions recognized two, four, or five subdivisions, not all of which were robustly supported in Bayesian and maximum likelihood phylogenetic analyses of the concatenated and single gene datasets. These hypotheses yielded maximum intra-clade genetic distances in COI of 2.56–6.19%, which are more consistent with hypothesized species-level thresholds for marine caenogastropods. Conclusions Based on our analyses of a more comprehensive dataset, we conclude that the evidence marshalled by Wiggering et al. in support of Planaxis sulcatus comprising a single widespread, highly variable species with geographic poecilogony is unconvincing and requires further investigation in an integrative taxonomic framework.
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- 2022
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8. The new Checklist of the Italian Fauna: marine Mollusca
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Walter Renda, Bruno Amati, Cesare Bogi, Giuseppe Bonomolo, Domenico Capua, Bruno Dell'Angelo, Giulia Furfaro, Riccardo Giannuzzi Savelli, Rafael La Perna, Italo Nofroni, Francesco Pusateri, Luigi Romani, Paolo Russo, Carlo Smriglio, Lionello Paolo Tringali, Marco Oliverio, Renda, W., Amati, B., Bogi, C., Bonomolo, G., Capua, D., Dell'Angelo, B., Furfaro, G., Giannuzzi-Savelli, R., La Perna, R., Nofroni, I., Pusateri, F., Romani, L., Russo, P., Smriglio, C., Lionello P., Tringali, and Oliverio, M.
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Global and Planetary Change ,Mollusca, marine, Bivalvia, Caudofoveata, Cephalopoda, Gastropoda, Monoplacophora, Polyplacophora, Scaphopoda, Solenogastres, species list ,Ecology ,Ecology, Evolution, Behavior and Systematics - Abstract
The mollusc fauna of the Mediterranean Sea is still considered as the best-known marine mollusc fauna in the world. The previous modern checklists of marine Mollusca were produced by joint teams of amateurs and professionals. During the last years the Italian Society of Malacology (Società Italiana di Malacologia – S.I.M.) maintained an updated version of the Mediterranean checklist, that served as the backbone for the development of the new Italian checklist. According to the current version (updated on April 1st, 2021), 1,777 recognised species of marine molluscs are present in the Italian Economic Exclusive Zone, including also the Tyrrhenian coasts of Corsica and the continental shelf of the Maltese archipelago. The new checklist shows an increase of 17% of the species reported in the 1995 Checklist. This is largely (yet not solely) due to the new wave of studies based on Integrative Taxonomy approaches. A total of 135 species (7.6%) are strictly endemic to the Italian waters; 44 species (2.5%) are alien and correspond to the 28% of the Mediterranean alien marine molluscs. All eight extant molluscan classes are represented. The families represented in the Italian fauna are 307, an increase of 14.6% from the first checklist, partly due to new records and partly to new phylogenetic systematics. Compared with the whole Mediterranean malacofauna, the Italian component represents 71% in species and 61% in families, which makes it a very remarkable part of the Mediterranean fauna.
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- 2022
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9. Towards the new Checklist of the Italian Fauna
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Marco Alberto Bologna, Lucio Bonato, Fabio Cianferoni, Alessandro Minelli, Marco Oliverio, Fabio Stoch, Marzio Zapparoli, Bologna, M. A., Bonato, L., Cianferoni, F., Minelli, A., Oliverio, M., Stoch, F., and Zapparoli, M.
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Global and Planetary Change ,Italy ,Ecology ,Metazoa ,marine specie ,terrestrial specie ,Biodiversity ,Ecology, Evolution, Behavior and Systematics ,freshwater species - Abstract
The Scientific Committee for the Italian Fauna is managing the new checklist of the animal species of Italy. The previous checklist was published in 1993-1995 and included both protozoans and Metazoa (more than 57,000 species); the new project, which includes only Metazoa, started in 2020 and is aimed at updating the former checklist (with more than 60,000 expected species) by on-line datasets and data papers. The new checklist includes marine species recorded in the Italian seas, divided into nine marine sectors, with the Italian Economic Exclusive Zone, and terrestrial and freshwater species recorded in administrative regions, as well as in the three macro-regions (northern continental, southern peninsular and insular - Sicily and Sardinia - macro-regions). Records from geopolitical units biogeographically Biogeographia 37: ucl001 Bologna 2 et al., 2022 related to Italy (i.e., Canton Ticino, CH; Corsica, F; San Marino Republic and Vatican City) are also included. Over 180 Italian and foreign taxonomists have so far participated to the first phase of this new project, providing datasets for taxa at different hierarchical level, from phyla to subfamilies and tribes. The list is intended to be a fundamental instrument not only for the faunistic knowledge of Italy, but also for biodiversity conservation strategies in the country and in the European Union. The new Checklist of the Italian fauna will be available from the LifeWatch Italy platform, and it will be progressively updated. Furthermore, data papers for taxa at different hierarchical level could be published with continuity in a special section of the journal Biogeographia – The Journal of Integrative Biogeography.
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- 2022
10. A molecular framework for the systematics of the Mediterranean spindle-shells (Gastropoda, Neogastropoda, Fasciolariidae, Fusininae)
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Giula Fassio, Paolo Russo, Giuseppe Bonomolo, Alexander E. Fedosov, Maria Vittoria Modica, Elisa Nocella, and MARCO OLIVERIO
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hadriania ,Pseudofusus ,Environmental Engineering ,pseudofusus ,Aptyxis ,fusinus ,Fasciolariidae ,Molecular phylogeny ,Aquatic Science ,Oceanography ,gracilipurpura ,Fusinus ,aptyxis ,Hadriania ,Systematics ,Gracilipurpura ,fasciolariidae ,molecular phylogeny ,systematics ,aegeofusinus ,Aegeofusinus ,Ecology, Evolution, Behavior and Systematics - Abstract
A remarkably high diversity of native small spindle-shells (Gastropoda, Fasciolariidae, Fusininae) has been recently inventoried in the Mediterranean Sea, with 23 species identified based on shell morphology. They have almost invariably been classified in the genus Fusinus, and a few of them recently moved to other genera (Aptyxis Troschel 1868, Aegeofusinus Russo, 2017 and Gracilipurpura Jousseaume, 1880), mostly based on the sole shell features. We have reconstructed a molecular phylogenetic framework for the Mediterranean Fusininae, focusing on native species representative of the genus-level taxa. Our results confirmed that Fusinus s.s. (type species Murex colus Linnaeus, 1758) should be restricted to a group of large-shelled species from the Indo-West Pacific and does not fit any of the small-shelled Mediterranean fusinines. We confirm that Murex syracusanus Linnaeus, 1758 represents a distinct lineage, and show that for all the remaining species the pattern is suggestive of a single monophyletic radiation of small Mediterranean fusinines, for which the name Pseudofusus Monterosato, 1884 must be used.
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- 2022
11. LA NUOVA CHECKLIST DELLA FAUNA ITALIANA
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Marco A. Bologna, Lucio Bonato, Fabio Cianferoni, Alessandro Minelli, Marco Oliverio, Fabio Stoch, Marzio Zapparoli, Bologna, Marco A., Bonato, Lucio, Cianferoni, Fabio, Minelli, Alessandro, Oliverio, Marco, Stoch, Fabio, and Zapparoli, Marzio
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- 2022
12. Taxonomic discussion on scientific names for Pacific oysters requires evidence-based arguments and pluralism
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Jorge Cáceres-Martínez, Carmen Paniagua, Carmel McDougall, John M. Healy, Paolo Mariottini, Daniele Salvi, Marco Oliverio, Richard C. Willan, Douglas J. Eernisse, Edgardo Londoño-Cruz, Hans Bertsch, Miguel Ángel Del Río-Portilla, Fabiola Lafarga-De la Cruz, Roberto Cruz-Flores, Graham P. Oliver, and Danielle C. Zacherl
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Crassostrea ,Magallana ,Nomenclature ,Talonostrea ,Taxonomic pluralism ,Taxonomic stability ,Evidence-based practice ,Pluralism (philosophy) ,Aquatic Science ,Biology ,Epistemology - Published
- 2022
13. Let bygones be bygones: The troubled chronicle of Odostomia unidentata (Montagu, 1803) (Gastropoda: Pyramidellidae)
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italo Nofroni, Marco Oliverio, Walter Renda, and Angelo Vannozzi
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ICZN ,northeastern Atlantic Ocean ,Mediterranean Sea ,Taxonomy, Montagu, type material, ICZN, northeastern Atlantic Ocean, Mediterranean Sea ,type material ,Montagu ,Taxonomy - Abstract
The recent publication by Oliver and co-authors about the extant type material of the molluscan taxa described by George Montagu has revealed that the only existing syntype of Turbo unidentatus Montagu, 1803, currently accepted as Odostomia unidentata, does not fit the current concept of this species but is a gerontic specimen of Brachystomia eulimoides (Hanley, 1844) instead. In order to understand the origin of this inconsistency, we studied the variability of the two species and carried out a review of the nomenclatural history of Odostomia unidentata. We examined a large amount of material to show that, apart from the different type of protoconch, a feature often neglected by ancient authors, the two species clearly differ due to the larger size reached by Brachystomia eulimoides and the different proportions, which are maintained in gerontics. A survey of the ancient literature showed that there was no consensus among 19th century authors about the identity of Montagu’s species. We reconstructed the troubled nomenclatural chronicle of this species and showed that, with very few exceptions, most authors misinterpreted Montagu’s description inverting the two species, until the current usage of Odostomia unidentata was widely accepted following Jeffreys’ (wrong) interpretation. The different ecology of the two species further supports this picture. To preserve nomenclatural stability, we are preparing an appeal to the International Commission on Zoological Nomenclature to use its plenary powers to set aside the only syntype of Turbo unidentatus and designate a neotype, based on a specimen fitting the current concept of O. unidentata, in agreement with Article 75.6, in order to maintain the prevailing usage of Montagu’s taxon.
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- 2022
14. How Many Abalone Species Live in the Mediterranean Sea?
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Giacomo Chiappa, Giulia Fassio, Andrea Corso, Fabio Crocetta, Maria Vittoria Modica, and Marco Oliverio
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COI ,Haliotis ,haliotidae ,integrative taxonomy ,species delimitation ,Ecology ,Ecological Modeling ,Agricultural and Biological Sciences (miscellaneous) ,Nature and Landscape Conservation - Abstract
Morphological traits in Haliotidae may be highly variable and not consistently diagnostic for species identification, highlighting the need for an integrative approach to the taxonomy of the family, including genetic data. Four species of the genus Haliotis are currently reported for the Mediterranean Sea and the neighboring Atlantic Ocean: Haliotis tuberculata, the common European abalone with the widest Atlanto-Mediterranean range; Haliotis mykonosensis, from the Aegean, the Tyrrhenian, and the Adriatic; Haliotis stomatiaeformis, from Malta, Lampedusa, and southeastern Sicily; and the Lessepsian Haliotis pustulata, only known on the basis of few samples from the Levant. However, their taxonomic status still relies only on shell morphology. Here, sequences of two fragments of the mitochondrial molecular marker COI were obtained from 84 abalone specimens collected in the Mediterranean Sea and the neighboring Atlantic and analyzed in order to provide for the first time a genetic framework for species delimitation. This study’s results prove that H. mykonosensis is genetically identical to H. tuberculata, whereas H. stomatiaeformis is a distinct species, endemic to a restricted area of the southern Mediterranean Sea. Finally, Haliotis tuberculata coccinea from Macaronesia may deserve its status as a subspecies of H. tuberculata, with genetic signature of a limited gene flow found in specimens of the nominal subspecies (H. t. tuberculata) in both the Atlantic and the Mediterranean Sea.
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- 2022
15. High genetic connectivity in a gastropod with long-lived planktonic larvae
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Angelo Vazzana, Valentina Tanduo, Luigi Caputi, Sofia Paz-Sedano, Marco Oliverio, and Fabio Crocetta
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0106 biological sciences ,0301 basic medicine ,Larva ,population genetics ,Zoology ,Aquatic Science ,Plankton ,Biology ,010603 evolutionary biology ,01 natural sciences ,larval development ,03 medical and health sciences ,030104 developmental biology ,Mollusca ,connectivity ,ecology ,evolution ,Animal Science and Zoology ,14. Life underwater - Abstract
Genetic connectivity plays a crucial role in shaping the geographic structure of species. Our aim in this study was to explore the pattern of genetic connectivity in Bursa scrobilator, an iconic marine caenogastropod with long-lived pelagic larvae. Our study was based on the analysis of DNA sequence data for the 658-bp barcoding fragment of the mitochondrial cytochrome c oxidase subunit I (COI) gene. This is the largest DNA sequence dataset assembled to date for B. scrobilator. These data confirm that the two recently described subspecies B. scrobilator scrobilator (Linnaeus, 1758), from the Mediterranean and Macaronesia, and B. s. coriacea (Reeve, 1844), from West Africa, constitute two evolutionarily significant units (ESUs). We found that for the nominal subspecies, the variation in morphology (shell, radula and gross anatomy) and DNA sequences was not geographically structured, and this agrees with what we would expect in a species with high connectivity at the larval stage. The divergence between the two subspecies cannot be easily explained by isolation by distance, and we would argue that one or more extrinsic factors may have played a role in isolating the two ESUs and maintaining that isolation.
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- 2019
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16. Becoming a limpet: An 'intermittent limpetization' process driven by host features in the kleptoparasitic gastropod family Capulidae
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Stefano Schiaparelli, Giulia Fassio, Valeria Russini, Marco Oliverio, Maria Vittoria Modica, Pierre Lozouet, and Philippe Bouchet
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0106 biological sciences ,0301 basic medicine ,Time Factors ,Range (biology) ,Lineage (evolution) ,Divergence time estimation ,Gastropoda ,010603 evolutionary biology ,01 natural sciences ,Host-Parasite Interactions ,03 medical and health sciences ,Animal Shells ,Limpetization, Kleptoparasitism, Capulidae, Divergence time estimation, Ancestral state reconstruction ,Genetics ,Animals ,Parasites ,Limpetization ,Kleptoparasitism ,14. Life underwater ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Stochastic Processes ,Obligate ,Phylogenetic tree ,biology ,Host (biology) ,Limpet ,Capulidae ,Ancestral state reconstruction ,divergence time estimation ,kleptoparasitism ,limpetization ,animal shells ,animals ,calibration ,parasites ,phylogeny ,stochastic processes ,time factors ,host-parasite Interactions ,biology.organism_classification ,030104 developmental biology ,Evolutionary biology ,Calibration - Abstract
A coiled shell is the most evident feature of the typical Bauplan of a gastropod mollusc. However, at least 54 families independently evolved an apparently simplified shell morphology: the limpet. Species with this largely uncoiled, depressed shell morphology occur in almost every aquatic habitat and are associated to a number of different lifestyles and diets. The marine gastropod family Capulidae includes 18 recognised genera, the large majority of which are coiled, but with a number of limpet-like species. Capulid shell plasticity is also associated to a broad range of feeding ecologies, from obligate suspension feeders to kleptoparasites. To investigate the evolution of the limpet-like shell in the family Capulidae we performed an ancestral state reconstruction analysis on a time-calibrated phylogenetic tree (COI, 16S, and ITS2) including 16 species representing a good deal of its morphological diversity. Our results identified at least three capulid lineages that independently evolved limpet-like shells, suggesting that a recurrent limpetization process characterizes this family. One of the limpet-like genera was undescribed and was here named Cryocapulus n. gen. We suggest that capulids evolved from a coiled suspension feeder lineage and that the shift to kleptoparasitism, which occurred in the family ancestor, may have represented a strategy to save energy through the exploitation of the water current produced by the host. Probably the major drivers of shell evolution in capulids are related to their ecology, most of them being kleptoparasites, include the shape and the kind of host substrate, and lead to the repeated acquisition of a limpet-like shape.
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- 2021
17. High cryptic diversity in the kleptoparasitic genus Hyalorisia Dall, 1889 (Littorinimorpha: Capulidae) with the description of nine new species from the Indo-West Pacific
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Stefano Schiaparelli, Marco Oliverio, Valeria Russini, Barbara Buge, Giulia Fassio, Philippe Bouchet, and Maria Vittoria Modica
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0106 biological sciences ,0301 basic medicine ,media_common.quotation_subject ,Gastropoda ,Zoology ,Littorinimorpha ,Aquatic Science ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Genus ,Animalia ,Biodiversity ,Mollusca ,Kleptoparasitism ,Cryptic Species ,14. Life underwater ,media_common ,Taxonomy ,biology ,Capulidae ,biology.organism_classification ,030104 developmental biology ,Hyalorisia ,Animal Science and Zoology ,Diversity (politics) - Abstract
Species in the family Capulidae (Littorinimorpha: Capuloidea) display a wide range of shell morphologies. Several species are known to live in association with other benthic invertebrates—mostly bivalves and sabellid worms, but also other gastropods—and are believed to be kleptoparasitic filter feeders that take advantage of the water current produced by the host. This peculiar trophic ecology, implying a sedentary lifestyle, has resulted in highly convergent shell forms. This is particularly true for the genus Hyalorisia Dall, 1889, which occurs in deep water in the Caribbean and Indo-West Pacific provinces, with two nominal species recognized so far. Combining morphological, ecological and molecular data, we assessed the diversity of the genus, its phylogenetic position inside the family and its association with its bivalve host, the genus Propeamussium de Gregorio, 1884 (Pectinoidea), resulting in the description of nine new cryptic species. When sympatric, species of Hyalorisia are associated with different host species, but the same species of Propeamussium may be the host of several allopatric species of Hyalorisia.
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- 2020
18. Three new species of Raphitoma Bellardi, 1847 (Mollusca, Gastropoda, Raphitomidae) from Croatian waters (NE Adriatic Sea)
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Riccardo Giannuzzi-Savelli, Francesco Pusateri, Marco Oliverio, Valeria Russini, Jakov Prkić, and Giulia Fassio
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0106 biological sciences ,Murex ,Raphitomidae ,Adriatic Sea ,Croatia ,new species ,Raphitoma ,Coral ,Gastropoda ,010607 zoology ,Zoology ,010603 evolutionary biology ,01 natural sciences ,Animalia ,Mollusca ,Ecology, Evolution, Behavior and Systematics ,Taxonomy ,Larva ,biology ,Biodiversity ,biology.organism_classification ,Protoconch ,Animal Science and Zoology ,Taxonomy (biology) ,Neogastropoda - Abstract
Three new species of the neogastropod family Raphitomidae Bellardi, 1875, are described from the Croatian waters of the Adriatic Sea: Raphitoma petanii Prkic, Giannuzzi-Savelli & Pusateri n. sp., R. pusaterii Prkic & Giannuzzi-Savelli n. sp. and R. stanici Prkic, Giannuzzi-Savelli & Pusateri n. sp. The new species are diagnosed by teleoconch characters and by genetic data (COI sequences) in an integrative taxonomy framework. They belong to a group of species with microgranules on the external surface of all teleoconch whorls and all three have a multispiral protoconch indicating a planktotrophic larval phase. The first two species are so far known only from material found in Croatia. R. petanii Prkic, Giannuzzi-Savelli & Pusateri n. sp. and R. stanici Prkic, Giannuzzi-Savelli & Pusateri n. sp. are predominantly shallow-water species, whereas R. pusaterii Prkic & Giannuzzi-Savelli n. sp. has been so far collected only from deeper bottoms with presence of the red coral, Corallium rubrum (Linnaeus, 1758). Syntypes of Murex echinatusBrocchi, 1814 are figured and commented.
- Published
- 2020
19. Revision of the Recent Alvania scabra (Philippi, 1844) complex (Mollusca, Gastropoda, Rissoidae) from the Mediterranean Sea with the description of a new species
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Bruno Amati, Danilo Scuderi, Massimo Appolloni, Carlo Smriglio, Marco Oliverio, Andrea Di Giulio, Amati, Bruno, Appolloni, Massimo, DI GIULIO, Andrea, Scuderi, Danilo, Smriglio, Carlo, and Oliverio, Marco
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Synonym ,Gastropoda ,Zoology ,Littorinimorpha ,taxonomy ,Mediterranean sea ,Alvania scabra ,Mediterranean Sea ,Animalia ,Rissoidae ,Alvania ,Animals ,Mollusca ,Ecology, Evolution, Behavior and Systematics ,new species ,biology ,Biodiversity ,biology.organism_classification ,new specie ,Animal Science and Zoology ,Taxonomy (biology) - Abstract
Herein we revise several Recent Mediterranean species of the rissoid genus Alvania Risso, 1826: Alvania scabra (Philippi, 1844), Alvania sculptilis (Monterosato, 1877), Alvania sororcula Granata-Grillo, 1877, Alvania lucinae Oberling, 1970, Alvania josefoi Oliver & Templado, 2009 and Alvania scuderii Villari, 2017. They represent a rather homogeneous group of morphologically similar species, referred to as the Alvania scabra complex, which includes also some other species from the northeastern Atlantic. We designate a neotype for Rissoa scabra Philippi, 1844 and a lectotype for Rissoa oranica Pallary, 1900 to stabilize the use of the names. Alvania oranica (Pallary, 1900) is confirmed as a synonym of Alvania scabra (Philippi, 1844), and Alvania asperella (Granata-Grillo, 1877) is proposed as a synonym of Alvania sororcula (Granata-Grillo, 1877) [new synonymy]. Finally, we describe one new Mediterranean species: Alvania pizzinii Amati, Smriglio & Oliverio n. sp. from Levanzo Is., Sicily.
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- 2020
20. A General Computational Formalism for Networks of Structured Grids
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Davide Spataro, Salvatore Straface, Paola Arcuri, William Spataro, Donato D'Ambrosio, Rocco Rongo, Mario D’Onghia, Alfonso Senatore, Marco Oliverio, Andrea Giordano, Alessio De Rango, and Giuseppe Mendicino
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Modeling and simulation ,Time variance ,Formalism (philosophy of mathematics) ,Theoretical computer science ,Computer science ,Complex system ,Synchronizing ,Nonlinear Sciences::Cellular Automata and Lattice Gases ,Computer Science::Formal Languages and Automata Theory ,Cellular automaton ,Direct acyclic graph ,Automaton - Abstract
Extended Cellular Automata (XCA) represent one of the most known parallel computational paradigm for the modeling and simulation of complex systems on stenciled structured grids. However, the formalism does not perfectly lend itself to the modeling of multiple automata were two or more models co-evolve by interchanging information and by synchronizing during the dynamic evolution of the system. Here we propose the Extended Cellular Automata Network (XCAN) formalism, an extension of the original XCA paradigm in which different automata are described by means of a graph, with vertices representing automata and inter-relations modeled by a set of edges. The formalism is applied to the modeling of a theoretical 2D/3D coupled system, where space/time variance and synchronization aspects are pointed out.
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- 2020
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21. Revision of Mediterranean and NE Atlantic Raphitomidae (Gastropoda, Conoidea) 8: The genus Leufroyia Monterosato, 1884
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Riccardo Giannuzzi-Savelli, Marco Oliverio, Valeria Russini, Stefano Bartolini, Giulia Fassio, Jakov Prkić, and Francesco Pusateri
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0106 biological sciences ,Mediterranean climate ,Raphitomidae ,Gastropoda ,010607 zoology ,Biodiversity ,Neogastropoda ,010603 evolutionary biology ,01 natural sciences ,Mediterranean sea ,Mediterranean Sea ,Conoidea ,Animalia ,Mollusca ,Ecology, Evolution, Behavior and Systematics ,integrative taxonomy ,Taxonomy ,biology ,Ecology ,biology.organism_classification ,Northeastern Atlantic ,Geography ,Animal Science and Zoology ,Taxonomy (biology) - Abstract
Giannuzzi-Savelli, Riccardo, Pusateri, Francesco, Prkić, Jakov, Bartolini, Stefano, Russini, Valeria, Fassio, Giulia, Oliverio, Marco (2020): Revision of Mediterranean and NE Atlantic Raphitomidae (Gastropoda, Conoidea) 8: The genus Leufroyia Monterosato, 1884. Zoosystema 42 (22): 433-473, DOI: 10.5252/zoosystema2020v42a22
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- 2020
22. Candidate cases of poecilogony in Neogastropoda: implications for the systematics of the genus Raphitoma Bellardi, 1847
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Jakov Prkić, Valeria Russini, Maria Vittoria Modica, Giulia Fassio, Francesco Pusateri, Riccardo Giannuzzi-Savelli, and Marco Oliverio
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0106 biological sciences ,0301 basic medicine ,Systematics ,Gastropoda ,Population ,Neogastropoda ,010603 evolutionary biology ,01 natural sciences ,Intraspecific competition ,evolution ,iterative taxonomy ,lecithotrophy ,planktotrophy ,03 medical and health sciences ,Monophyly ,14. Life underwater ,education ,Ecology, Evolution, Behavior and Systematics ,education.field_of_study ,biology ,Marine invertebrates ,Interspecific competition ,biology.organism_classification ,030104 developmental biology ,Evolutionary biology ,Taxonomy (biology) - Abstract
Poecilogony is the intraspecific variation in developmental mode, with larvae of different types produced by the same individual, population or species. It is very rare among marine invertebrates, and in gastropods has long been described only in a few opisthobranchs. The physiological and regulatory mechanisms underlying larval evolutionary transitions, such as loss of planktotrophy that occurred repeatedly in many caenogastropod lineages, are still largely unknown. We have studied the inter- v. intraspecific variation in larval development in the north-east Atlantic neogastropod genus Raphitoma Bellardi, 1847, starting with an iterative taxonomy approach: 17 morphology-based Preliminary Species Hypotheses were tested against a COI molecular-distance-based method (ABGD), and the retained species hypotheses were eventually inspected for reciprocal monophyly on a multilocus dataset. We subsequently performed an ancestral state reconstruction on an ultrametric tree of the 10 Final Species Hypotheses, time-calibrated by fossils, revealing that the interspecific changes were planktotrophy > lecithotrophy, and all have occurred in the Pleistocene, after 2.5 million years ago. This is suggestive of a major role played by Pleistocene Mediterranean oceanographic conditions – enhanced oligotrophy, unpredictable availability of water column resources – likely to favour loss of planktotrophy. Within this group of species, which has diversified after the Miocene, we identified one pair of sibling species differing in their larval development, Raphitoma cordieri (Payraudeau, 1826) and R. horrida (Monterosato, 1884). However, we also identified two Final Species Hypotheses, each comprising individuals with both larval developmental types. Our working hypothesis is that they correspond to one or two poecilogonous species. If confirmed by other nuclear markers, this would be the first documentation of poecilogony in the Neogastropoda, and the second in the whole Caenogastropoda. Although sibling species with different developmental strategies may offer good models to study some evolutionary aspects, poecilogonous taxa are optimally suited for identifying regulatory and developmental mechanisms underlying evolutionary transitions.
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- 2020
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23. Antarctic coastal nanoplankton dynamics revealed by metabarcoding of desalination plant filters: Detection of short-term events and implications for routine monitoring
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Giovanni Tassistro, Giulia Fassio, Katia Sciuto, Stefano Schiaparelli, Marco Oliverio, Matteo Cecchetto, Ester M. Eckert, Diego Fontaneto, Isabella Moro, Luigi Vezzulli, and Andrea Di Cesare
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Katabatic wind ,Environmental Engineering ,010504 meteorology & atmospheric sciences ,Monitoring ,Antarctica ,coastal plankton ,desalination plant ,DNA metabarcoding ,monitoring ,Ross Sea ,Terra Nova Bay ,Antarctic regions ,environmental monitoring ,plankton ,seawater ,Antarctic Regions ,010501 environmental sciences ,01 natural sciences ,Desalination ,Water column ,Desalination plant ,Environmental Chemistry ,Seawater ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Sampling (statistics) ,Ambientale ,Plankton ,Pollution ,Term (time) ,Oceanography ,Antarctica, Ross Sea, Terra Nova Bay, Coastal plankton, Monitoring, Desalination plant, DNA metabarcoding ,Environmental science ,Antarctica, Coastal plankton, Desalination plant, DNA metabarcoding, Monitoring, Ross Sea, Terra Nova Bay ,Bay ,Coastal plankton ,Environmental Monitoring - Abstract
One of the main requirements of any sound biological monitoring is the availability of long term and, possibly, temporal data with a high resolution. This is often difficult to be achieved, especially in Antarctica, due to a variety of logistic constraints, which make continuous sampling and monitoring activities generally unfeasible. Here we focus on the 5 μm filters used in the desalination plant of the Italian research base “Mario Zucchelli” in the Terra Nova Bay area (Ross Sea, Antarctica) to evaluate intra-annual coastal nanoplankton dynamics. These filters, together with others of larger mesh sizes, are used to decrease the amount of organisms and debris in the input seawater before the desalination processes take place, hence automatically collect the plankton present in the water column around the desalination system intake. We have used a DNA metabarcoding approach to characterize the communities retained by filters' sets collected in January 2012 and 2013. Intra-annual dynamics were disclosed with an unprecedented detail, that would not have been possible by using standard sampling approaches, and highlighted the importance of extreme, stochastic events such as katabatic wind pulses, which triggered dramatic, short-term shifts in coastal nanoplankton composition. This method, by combining a cost-effective sampling and molecular techniques, may represent a viable solution for long-term monitoring programs focusing on Antarctic coastal communities.
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- 2020
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24. The Open Computing Abstraction Layer for Parallel Complex Systems Modeling on Many-Core Systems
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Alessio De Rango, Alfonso Senatore, Marco Oliverio, Davide Spataro, Giuseppe Mendicino, Rocco Rongo, Donato D'Ambrosio, and William Spataro
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020203 distributed computing ,Correctness ,Computer Networks and Communications ,Computer science ,business.industry ,Complex system ,02 engineering and technology ,Parallel computing ,Data structure ,Grid ,01 natural sciences ,010305 fluids & plasmas ,Theoretical Computer Science ,Abstraction layer ,Software ,Artificial Intelligence ,Hardware and Architecture ,0103 physical sciences ,0202 electrical engineering, electronic engineering, information engineering ,Distributed memory ,business ,Implementation ,System software - Abstract
This article introduces OpenCAL, a new open source computing abstraction layer for multi- and many-core computing based on the Extended Cellular Automata general formalism. OpenCAL greatly simplifies the implementation of structured grid applications, contextually making parallelism transparent to the user. Different OpenMP- and OpenCL-based implementations have been developed, together with a preliminary MPI-based distributed memory version, which is currently under development. The system software architecture is presented and underlying data structures and algorithms described. Numerical correctness and efficiency have been assessed by considering the S c i d d i c a T Computational Fluid Dynamics landslide simulation model as reference example. Eventually, a comprehensive study has been performed to devise the best platform for execution as a function of numerical complexity and computational domain extent. Results obtained have highlighted the OpenCAL’s potential for numerical models development and their execution on the most suitable high-performance parallel computational device.
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- 2018
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25. Anti-haemostatic compounds from the vampire snail Cumia reticulata: Molecular cloning and in-silico structure-function analysis
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Marco Oliverio, Maria Vittoria Modica, Andrea Pasquadibisceglie, Manuela Cervelli, Jonathan Fernando Reinoso Sanchez, Paolo Mariottini, Modica, Maria Vittoria, REINOSO SANCHEZ, JONATHAN FERNANDO, Pasquadibisceglie, Andrea, Oliverio, Marco, Mariottini, Paolo, and Cervelli, Manuela
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Models, Molecular ,0301 basic medicine ,Protein Conformation ,medicine.medical_treatment ,In silico ,Messenger ,Snails ,Protease Inhibitor ,Molecular cloning ,Biochemistry ,03 medical and health sciences ,Protein structure ,Models ,Structural Biology ,medicine ,Animals ,Protease Inhibitors ,Secretion ,RNA, Messenger ,Cloning, Molecular ,Hemostasis ,Anti-haemostatic compound ,Protease ,Animal ,Chemistry ,Organic Chemistry ,Anticoagulant ,Anticoagulants ,Molecular ,Protein modelling ,Hemostasi ,Protease inhibitor (biology) ,3. Good health ,Algorithm ,Computational Mathematics ,030104 developmental biology ,Snail ,Structural biology ,RNA ,Anti-haemostatic compounds ,Mollusc ,Algorithms ,Astacin ,Cloning ,medicine.drug - Abstract
Blood-feeding animals are known for their ability to produce bioactive compounds to impair haemostasis and suppress pain perception in the host. These compounds are extremely appealing for pharmacological development since they are generally very effective and specific for their molecular target. A preliminary RNA-Seq based characterization of the secretion from salivary and mid-oesophageal tissues of the vampire snail Cumia reticulata, revealed a complex mixture of feeding-related transcripts with potential anaesthetic and anticoagulant action. Based on the cloned full-length mRNAs, it was possible to verify the sequence of five genes encoding haematophagy-related products. The in silico modelled three-dimensional structure of each translational product was analysed to gain information on their potential biochemical activity. We have hereby validated and further investigated the assembled transcripts presumably involved in the antihaemostatic action, to improve our comprehensive understanding of this subset of the feeding secretion. The studied proteins included both inhibitors of primary haemostasis such as the vWFA domain-containing proteins, and compounds targeting different steps of the coagulation cascade, as e.g. the Turripeptide-like/protease inhibitor, the TFPI-like multiple Kunitz-type protease inhibitors, the Meprin-like metalloproteases and the Astacin/ShKT-like domain-containing proteins. All these molecules showed promising potential for pharmacological development.
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- 2018
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26. Revision of the Ocinebrina aciculata species complex (Mollusca: Gastropoda: Muricidae) in the northeastern Atlantic Ocean and Mediterranean Sea
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Chrifa Aissaoui, Marco Oliverio, Fabio Crocetta, Giuseppe Bonomolo, Andrea Barco, and Roland Houart
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0106 biological sciences ,0301 basic medicine ,Mediterranean climate ,Species complex ,Murex ,biology ,Muricidae ,Zoology ,Aquatic Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Fishery ,03 medical and health sciences ,Type species ,030104 developmental biology ,Mediterranean sea ,Corallina ,Gastropoda ,Animal Science and Zoology ,14. Life underwater - Abstract
We used a molecular phylogenetic approach to investigate species delimitation and diversification in the northeastern Atlantic and Mediterranean musseldrills of the Ocinebrina aciculata complex, based on molecular data from topotypical material of many of the nominal taxa. The complex is shown to consist of at least five species: Ocinebrina aciculata (Lamarck, 1822) from the Atlantic and western Mediterranean; O. cf. corallina (Scacchi, 1836) from the central Mediterranean Sea; O. reinai Bonomolo & Crocetta, 2012 from the Tyrrhenian Sea; O. corallinoides Pallary, 1912 from the Gulf of Gabes; and O. aegeensis n. sp. currently known from the Aegean Sea only. The new species is differentiated from the other taxa by very subtle morphological diagnostic features, although it is clearly identified by genetic distance and apomorphic DNA-sequence characters. The identity of Murex corallinus Scacchi, 1836 (type species of Ocinebrina Jousseaume, 1880) could not be defined with certainty, pending genetic comparison of specimens of the â €? large Tyrrhenian morphotype' (corresponding to the neotype, but not assayed herein) with the assayed â €? small morphotype'.
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- 2017
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27. An assessment of the genusColumbellaLamarck, 1799 (Gastropoda: Columbellidae) from eastern Atlantic
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Marta J. Demaintenon, Maria Vittoria Modica, Giulia Fassio, Marco Oliverio, and Valeria Russini
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0106 biological sciences ,Mediterranean climate ,Range (biology) ,Gastropoda ,Mediterranean ,Biology ,010603 evolutionary biology ,01 natural sciences ,DNA-barcoding ,Genus ,Animalia ,Columbella ,integrative taxonomy ,Ecology, Evolution, Behavior and Systematics ,Taxonomy ,geography ,geography.geographical_feature_category ,Ecology ,010604 marine biology & hydrobiology ,East Atlantic ,Columbellidae ,Biodiversity ,biology.organism_classification ,lectotypification ,Mollusca ,columbellidae ,Protoconch ,Archipelago ,Animal Science and Zoology ,Neogastropoda - Abstract
Three species of the neogastropod genus Columbella Lamarck, 1799 are recognised from the northeastern Atlantic and the Mediterranean. One is the common Mediterranean C. rustica (Linnaeus, 1758), with paucispiral protoconch, extending its range in the Atlantic South to Senegal and North to Portugal. Columbella adansoni Menke, 1853, with multispiral protoconch is restricted to the Macaronesian archipelagoes. A third species, also with multispiral protoconch, from West Africa is recognised through molecular methods, and the name C. xiphitella Duclos, 1840 is employed by correcting the original erroneous locality (“Californie”) to Gabon. Except for protoconch features, no major morphological characters are available to separate the three species; however diagnostic species-level differences in specific positions in the cytochrome c oxidase I (COI) sequences are present between all three species.
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- 2017
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28. Do larval types affect genetic connectivity at sea? Testing hypothesis in two sibling marine gastropods with contrasting larval development
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Valeria Russini, Marco Oliverio, Maria Vittoria Modica, and Giulia Fassio
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0106 biological sciences ,0301 basic medicine ,Aquatic Organisms ,Gastropoda ,Aquatic Science ,gastropods ,genetic connectivity ,larval development ,lecithotrophy ,planktotrophy ,oceanography ,aquatic science ,pollution ,Oceanography ,010603 evolutionary biology ,01 natural sciences ,Columbella rustica ,03 medical and health sciences ,Genetic variation ,Mediterranean Sea ,Animals ,14. Life underwater ,Columbella ,Ecosystem ,Genetic diversity ,biology ,Ecology ,Marine larval ecology ,Cytochrome c oxidase subunit I ,Genetic Variation ,Pelagic zone ,General Medicine ,biology.organism_classification ,Pollution ,Phylogeography ,Genetics, Population ,030104 developmental biology ,Larva ,Biological dispersal ,Animal Distribution ,Environmental Monitoring - Abstract
In marine environments, connectivity among populations of benthic invertebrates is provided primarily by dispersion of larvae, with the duration of pelagic larval phase (PLD) supposed to represent one of the major factor affecting connectivity. In marine gastropods, PLD is linked to specific larval development types, which may be entirely intracapsular (thus lacking a pelagic dispersal), or include a short pelagic lecithotrophic or a long planktotrophic phase. In the present study, we investigated two sibling species of the cosmopolitan neogastropod genus Columbella (commonly known as dove shells): Columbella adansoni Menke, 1853, from the Macaronesian Atlantic archipelagos, with planktotrophic development, and Columbella rustica Linnaeus, 1758, from the Mediterranean Sea, with intracapsular development. We expected to find differences between these two sister species, in terms of phylogeographic structure, levels of genetic diversification and spatial distribution of genetic diversity, if PLD was actually a relevant factor affecting connectivity. By analysing the sequence variation at the cytochrome c oxidase subunit I (COI) in 167 specimens of the two species, collected over a comparable geographic range, we found that Columbella adansoni, the species with planktotrophic development, and thus longer PLD, showed no phylogeographic structure, lower levels of genetic diversity, interpopulational variance lower than the intrapopulational one and no spatial structure in the distribution of the genetic diversity; Columbella rustica, the species with intracapsular development, thus with evidently lower dispersal abilities, showed a clear phylogeographic structure, higher levels of genetic diversity, high interpopulational and low intrapopulational variance, and a clear signature of global spatial structure in the distribution of the genetic diversity. Thus, in this study, two sibling species differing almost only in their larval ecology (and PLD), when compared for their genetic variation showed patterns supporting the hypothesis that PLD is a major factor affecting genetic connectivity. Therefore, it seems reasonable to expect that the ecological attributes of the marine communities - also in terms of the variation in larval ecology of the species involved - are taken into the due consideration in conservation actions, like the design of marine protected areas networks.
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- 2017
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29. An Antarctic flock under the Thorson's rule: diversity and larval development of Antarctic Velutinidae (Mollusca: Gastropoda)
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Giulia Fassio, Stefano Schiaparelli, Barbara Buge, Marco Oliverio, Maria Chiara Alvaro, Maria Vittoria Modica, and Daniele Salvi
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0106 biological sciences ,0301 basic medicine ,Evolution ,Lineage (evolution) ,Species distribution ,Thorson's rule ,Gastropoda ,Zoology ,Antarctic Regions ,010603 evolutionary biology ,01 natural sciences ,Electron Transport Complex IV ,03 medical and health sciences ,Behavior and Systematics ,Species Specificity ,Databases, Genetic ,Genetics ,Antarctica ,Integrative taxonomy ,Larval ecology ,Velutinidae ,Ecology, Evolution, Behavior and Systematics ,Molecular Biology ,Animals ,14. Life underwater ,Urochordata ,Mollusca ,Phylogeny ,Cell Nucleus ,Larva ,Ecology ,Phylogenetic tree ,biology ,fungi ,Pelagic zone ,Bayes Theorem ,Biodiversity ,biology.organism_classification ,030104 developmental biology ,Thorson's rule, Larval ecology, Integrative taxonomy, Antarctica, Gastropoda, Velutinidae - Abstract
In most marine gastropods, the duration of the larval phase is a key feature, strongly influencing species distribution and persistence. Antarctic lineages, in agreement with Thorson's rule, generally show a short pelagic developmental phase (or lack it completely), with very few exceptions. Among them is the ascidian-feeding gastropod family Velutinidae, a quite understudied group. Based on a multilocus (COI, 16S, 28S and ITS2) dataset for 182 specimens collected in Antarctica and other regions worldwide, we investigated the actual Antarctic velutinid diversity, inferred their larval development, tested species genetic connectivity and produced a first phylogenetic framework of the family. We identified 15 Antarctic Molecular Operational Taxonomic Units (MOTUs), some of which represented undescribed species, which show two different types of larval shell, indicating different duration of the Pelagic Larval Phase (PLD). Antarctic velutinids stand as an independent lineage, sister to the rest of the family, with extensive hidden diversity likely produced by rapid radiation. Our phylogenetic framework indicates that this Antarctic flock underwent repeated events of pelagic phase shortening, in agreement with Thorson's rule, yielding species with restricted geographic ranges.
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- 2019
30. A Recurrent Motif: Diversity and Evolution of ShKT Domain Containing Proteins in the Vampire Snail Cumia reticulata
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Paolo Mariottini, Manuela Cervelli, Marco Gerdol, Marco Oliverio, Sébastien Dutertre, Maria Vittoria Modica, Gerdol, Marco, Cervelli, Manuela, Mariottini, Paolo, Oliverio, Marco, Dutertre, Sébastien, Modica, Maria Vittoria, Vittoria Modica, Maria, University of Trieste, Università degli Studi Roma Tre, Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Institut des Biomolécules Max Mousseron [Pôle Chimie Balard] (IBMM), Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Institut de Chimie du CNRS (INC)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), and Stazione Zoologica Anton Dohrn (SZN)
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haematophagy ,Health, Toxicology and Mutagenesis ,Protein domain ,Snails ,Gastropoda ,parasitism ,lcsh:Medicine ,Venom ,Snail ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,parasitism domain duplication ,Biology ,domain duplication ,Toxicology ,Article ,Evolution, Molecular ,03 medical and health sciences ,Astacin ,CRISP ,gene duplication ,ShKT ,0302 clinical medicine ,Cnidarian Venoms ,Protein Domains ,biology.animal ,Gene duplication ,Potassium Channel Blockers ,Animals ,Toxicology and Mutagenesis ,Gene ,Cumia ,Phylogeny ,030304 developmental biology ,0303 health sciences ,lcsh:R ,gastropoda ,biology.organism_classification ,Molecular analysis ,Biochemistry ,Health ,[SDV.TOX]Life Sciences [q-bio]/Toxicology ,Transcriptome ,030217 neurology & neurosurgery - Abstract
Proteins of the ShK superfamily are characterized by a small conserved domain (ShKT), first discovered in small venom peptides produced by sea anemones, and acting as specific inhibitors of voltage-dependent and calcium-activated K+ channels. The ShK superfamily includes both small toxic peptides and larger multifunctional proteins with various functions. ShK toxins are often important components of animal venoms, where they perform different biological functions including neurotoxic and immunosuppressive effects. Given their high specificity and effectiveness, they are currently regarded as promising pharmacological lead compounds for the treatment of autoimmune diseases. Here, we report on the molecular analysis of ShKT domain containing proteins produced by the Mediterranean vampire snail Cumia reticulata, an ectoparasitic gastropod that feeds on benthic fishes. The high specificity of expression of most ShK transcripts in salivary glands identifies them as relevant components of C. reticulata venom. These ShK proteins display various structural architectures, being produced either as single-domain secretory peptides, or as larger proteins combining the ShKT with M12 or CAP domains. Both ShKT-containing genes and their internal ShKT domains undergo frequent duplication events in C. reticulata, ensuring a high level of variability that is likely to play a role in increasing the range of their potential molecular targets.
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- 2019
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31. An assessment of Raphitoma and allied genera (Neogastropoda: Raphitomidae)
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Francesco Pusateri, Giulia Fassio, Nicolas Puillandre, Maria Vittoria Modica, Valeria Russini, Riccardo Giannuzzi-Savelli, Marco Oliverio, Tore Høisæter, Stazione Zoologica Anton Dohrn (SZN), Dipartimento di Biologia e Biotecnologie 'Charles Darwin', Università degli Studi di Roma 'La Sapienza' [Rome], University of Bergen (UiB), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Institut des Biomolécules Max Mousseron [Pôle Chimie Balard] (IBMM), and Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Institut de Chimie du CNRS (INC)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
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0106 biological sciences ,Systematics ,0303 health sciences ,biology ,Phylogenetic tree ,Cytochrome c oxidase subunit I ,Zoology ,Aquatic Science ,Neogastropoda ,phylogeny ,biology.organism_classification ,[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy ,010603 evolutionary biology ,01 natural sciences ,[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology ,03 medical and health sciences ,Raphitoma ,systematics ,conoidea ,Genus ,Molecular phylogenetics ,Animal Science and Zoology ,Subgenus ,030304 developmental biology - Abstract
The systematics of several Eastern Atlantic conoidean species, traditionally ascribed to the genus RaphitomaBellardi, 1847, are revised on the basis of DNA sequence data from three gene regions (cytochrome c oxidase subunit I, 16S rRNA and 12S rRNA). We assign genus ranking to three major lineages (Raphitoma, CyrilliaKobelt, 1905 and LeufroyiaMonterosato, 1884) and suggest that two West African species belong in the subgenus Daphnella (Paradaphne) Laseron, 1954. A new classification, based on molecular systematics and critical study of morphology, is provided for all Eastern Atlantic and Mediterranean species that are currently ascribed to Raphitoma s.l. The genus ClathromangeliaMonterosato, 1884 is confirmed as belonging to Raphitomidae. Phylogenetic relationships and genetic distances suggest that Raphitoma maculosaHøisæter, 2016 and R. obesaHøisæter, 2016 may be divergent morphotypes of R. bicolor (Risso, 1826) and Cyrillia aequalis (Jeffreys, 1867), respectively.
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- 2019
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32. Molecular identity of Nemoura lacustris (Plecoptera: Nemouridae) throughout its distributional range
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Gloria Tapia, Marco Oliverio, Romolo Fochetti, Valeria Russini, and José Manuel Tierno de Figueroa
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Phylogenetic tree ,Range (biology) ,Zoology ,Genetic Variation ,Biodiversity ,Biology ,Nemouridae ,biology.organism_classification ,DNA barcoding ,DNA, Mitochondrial ,Neoptera ,humanities ,United Kingdom ,Genetic divergence ,Europe ,Monophyly ,Vicariance ,Biological dispersal ,Animals ,Animal Science and Zoology ,France ,Dispersal ,DNA-barcoding ,Phylogeography ,Species delimitation ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Taxonomy - Abstract
The recent report of Nemoura lacustris Pictet, 1865 in Great Britain has raised doubts on its identity, given the isolation with respect to the Mediterranean and continental populations of this species. Using molecular analyses, we tested if populations from the United Kingdom and the Iberian Peninsula were conspecific and tested the hypotheses of a recent colonization event versus a more ancient origin for the British populations. Phylogenetic analysis of the mitochondrial marker COI allowed us to conclude that the United Kingdom specimens morphologically ascribed to N. lacustris were conspecific with populations from France and the Iberian Peninsula. Based on the genetic divergence of the two reciprocally monophyletic clades from the Iberian Peninsula and Great Britain/France, respectively, the present distribution of N. lacustris can be postulated as a relatively recent dispersal or introduction into Great Britain from France. Finally, we note the isolated position displayed by N. lacustris in the phylogenetic tree of Nemoura species based on COI sequences, as the sister to all included species of the genus. This isolated position corresponds with the specific morphology of N. lacustris genitalia and requires additional studies to ascertain clearer generic boundaries within the Nemouridae.
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- 2019
33. Cryptic diversity in Mediterranean gastropods of the genus Aplus (Neogastropoda: Buccinidae)
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Chrifa Aissaoui, Nicolas Puillandre, Philippe Bouchet, Giulia Fassio, Maria Vittoria Modica, and Marco Oliverio
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lcsh:SH1-691 ,cryptic species ,taxonomy ,DNA-barcoding ,Mollusca ,gastropoda ,Aquaculture. Fisheries. Angling ,SH1-691 ,DNA-barcode ,taxonomía ,lcsh:Aquaculture. Fisheries. Angling ,especies crípticas - Abstract
Northeastern Atlantic and Mediterranean gastropods previously ascribed to the buccinid genus Pollia Gray, 1837 are more correctly classified in the genus Aplus de Gregorio, 1885. Using an integrative taxonomy approach combining molecular, morphological and geographic data, we revisit the limits of the extant species in the area, and propose a molecular phylogenetic hypothesis based on 66 specimens from various localities in the Mediterranean Sea, including type localities of some nominal taxa. We used a preliminary morphological inspection, followed by a DNA-barcoding approach to propose species hypotheses, subsequently consolidated using additional data (phylogenetic, geographic and refined morphological data). Seven species hypotheses were eventually retained within our molecularly assayed samples, versus three classical morphologically recognized species. Among these, three correspond to Aplus dorbignyi (Payreaudeau, 1826) with its hitherto unrecognized geographical cognates A. gaillardoti (Puton, 1856) (eastern Mediterranean) and Aplus nodulosus (Bivona Ant., 1832) (Sicily); two closely related, yet considerably divergent, lineages are treated as a single species under Aplus scaber (Locard, 1892); the classically admitted Aplus scacchianus (Philippi, 1844) is confirmed by molecular evidence; Mediterranean populations attributable to Aplus assimilis (Reeve, 1846) may represent either cryptic native populations or an ongoing invasion of the Mediterranean by what was hitherto considered to be a West African species; finally, specimens from the Strait of Gibraltar may represent an undescribed species, but we conservatively refrain from formally introducing it pending the analysis of more material, and it is compared with the similar Aplus campisii (Ardovini, 2014), recently described from Sicily and not assayed molecularly, and Aplus scaber. Los gasterópodos mediterráneos y del Atlántico nordeste previamente asignados al género Pollia Gray, 1837 deben ser más correctamente incluidos en el género Aplus de Gregorio, 1885. Se revisan aquí los límites de las especies recientes de este género en el área estudiada por medio de un enfoque de taxonomía integrativa. En base a ello se propone una hipótesis filogenética basada en 66 ejemplares procedentes de varias localidades del Mediterráneo, incluyendo las localidades tipo de algunos taxones nominales. Primero se realizó una diferenciación morfológica, seguida de la aplicación del marcador molecular COI para proponer las especies a modo de hipótesis, que finalmente fueron validadas con datos adicionales (filogenéticos, geográficos y detalles morfológicos). Como resultado se reconocieron siete especies válidas entre los ejemplares analizados molecularmente, en contraste con las tres especies previamente reconocidas morfológicamente. Tres de ellas corresponden a Aplus dorbignyi (Payreaudeau, 1826) y a sus afines geográficos no reconocidas hasta ahora A. gaillardoti (Puton, 1856) [del Mediterráneo oriental] y Aplus nodulosus (Bivona Ant., 1832) [de Sicilia]; dos linajes estrechamente relacionados, aunque divergentes, son considerados como una misma especie con el nombre de Aplus scaber (Locard, 1892); la especie tradicionalmente admitida Aplus scacchianus (Philippi, 1844) se confirma en base a evidencias moleculares; las poblaciones mediterráneas atribuibles a Aplusas similis (Reeve, 1846) pueden ser crípticas nativas o corresponder a una invasión en curso por parte de esta especie del noroeste africano; finalmente los ejemplares del Estrecho de Gibraltar pueden representar una especie no descrita, pero se ha preferido optar por una posición conservadora y no introducir un nuevo nombre a la espera del estudio de material adicional y compararla con Aplus campisii (Ardovini, 2014), especie descrita recientemente de Sicilia y pendiente de su análisis molecular, y con Aplus scaber.
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- 2016
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34. Antarctic food web architecture under varying dynamics of sea ice cover
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Simona Sporta Caputi, Giulio Careddu, Edoardo Calizza, Marco Oliverio, Maria Letizia Costantini, Stefano Schiaparelli, and Loreto Rossi
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0301 basic medicine ,Aquatic Organisms ,Food Chain ,Oceans and Seas ,Biodiversity ,lcsh:Medicine ,Antarctic Regions ,Article ,03 medical and health sciences ,0302 clinical medicine ,Effects of global warming ,food web ,stable isotopes ,Antarctica ,climate change ,sea-ice ,Sea ice ,lcsh:Science ,geography ,Multidisciplinary ,geography.geographical_feature_category ,lcsh:R ,Ice ,Climate-change ecology ,Food webs ,Food web ,030104 developmental biology ,Oceanography ,Disturbance (ecology) ,Benthic zone ,Ecological networks ,Environmental science ,lcsh:Q ,Bay ,030217 neurology & neurosurgery ,Intraguild predation - Abstract
In the Ross Sea, biodiversity organisation is strongly influenced by sea-ice cover, which is characterised by marked spatio-temporal variations. Expected changes in seasonal sea-ice dynamics will be reflected in food web architecture, providing a unique opportunity to study effects of climate change. Based on individual stable isotope analyses and the high taxonomic resolution of sampled specimens, we described benthic food webs in contrasting conditions of seasonal sea-ice persistence (early vs. late sea-ice break up) in medium-depth waters in Terra Nova Bay (Ross Sea). The architecture of biodiversity was reshaped by the pulsed input of sympagic food sources following sea-ice break up, with food web simplification, decreased intraguild predation, potential disturbance propagation and increased vulnerability to biodiversity loss. Following our approach, it was possible to describe in unprecedented detail the complex structure of biodiverse communities, emphasising the role of sympagic inputs, regulated by sea-ice dynamics, in structuring Antarctic medium-depth benthic food webs.
- Published
- 2018
35. Catalogue of the primary types of marine molluscan taxa described by Tommaso Allery Di Maria, Marquis of Monterosato, deposited in the Museo Civico di Zoologia, Roma
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Lorenzo Lugliè, Lionello P. Tringali, Massimo Appolloni, Carlo Smriglio, Marco Oliverio, Italo Nofroni, Bruno Amati, and Paolo Mariottini
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Retusidae ,Donacidae ,0106 biological sciences ,Dentaliida ,Conidae ,Ringiculidae ,Barleeiidae ,Ostreoida ,Nuculanidae ,Arcida ,Dentaliidae ,01 natural sciences ,Mactridae ,Chitonidae ,Veneroida ,Neotaenioglossa ,Vetigastropoda ,Rissoidae ,Museums ,Argonautidae ,Chamidae ,Janthinidae ,Aporrhaidae ,Not ,Tornidae ,Polyplacophora ,Peraclidae ,Naticidae ,Haminoeidae ,Turritellidae ,Caenogastropoda, ordo incertae sedis ,Arcidae ,Cerithiopsidae ,Nuculidae ,Gryphaeidae ,Galeommatidae ,Acteonidae ,010607 zoology ,Triphoridae ,Corbulidae ,Heterostropha ,Turbinidae ,Neoloricata ,Limidae ,Trochidae ,Muricidae ,Anomiidae ,Opisthobranchia ,Velutinidae ,Marginellidae ,Epitoniidae ,Cardiidae ,Pterioida ,Ecology, Evolution, Behavior and Systematics ,Fissurellidae ,Triviidae ,Fasciolariidae ,Calyptraeidae ,Archaeology ,Taxon ,Cephalopoda ,Mollusca ,Siliculidae ,Skeneidae ,Pseudococculinidae ,Animal Science and Zoology ,Neogastropoda ,Caecidae ,Nassariidae ,Raphitomidae ,Murchisonellidae ,Cephalaspidea ,Diaphanidae ,Gastropoda ,Cingulopsidae ,Bivalvia ,Mediterranean ,Monterosato ,Nomenclature ,Northeast Atlantic ,Scaphopoda ,Type ,Truncatellidae ,Nuculanida ,Octopoda ,Littorinimorpha ,Callistoplacidae ,Pinnidae ,Phasianellidae ,Architectonicidae ,Tellinidae ,Pyramidellidae ,Vermetidae ,Pholadomyoida ,Mytiloida ,Biodiversity ,Anatomidae ,Mathildidae ,Ellobiidae ,Mollusca (awaiting allocation) ,Taxonomy (biology) ,Thecosomata ,Thyasiridae ,Biology ,Archaeogastropoda ,010603 evolutionary biology ,Cerithiidae ,Calliostomatidae ,Animals ,Animalia ,Eulimidae ,Gadilidae ,Newtoniellidae ,Taxonomy ,Turridae ,Columbellidae ,Nuculoida ,Ostreidae ,Pectinidae ,Myoida ,Mytilidae ,Cuspidariidae ,Buccinidae ,Pteriidae ,Anabathridae ,Haliotidae - Abstract
We have compiled a complete list of new marine molluscan taxa introduced by Tommaso Allery Di Maria, Marquis of Monterosato (1841–1927). The dates of publication of every single work have been checked against available evidence, and an updated bibliography is also presented. Finally, the type material of all marine taxa expected to be in the collection Monterosato (presently preserved in the Museo Civico di Zoologia in Rome) has been searched in the main collection, and all retrieved specimens have been catalogued. A large majority of the material has been found, representative specimens of each taxon have been illustrated, and remarks on nomenclature and taxonomy have been provided yielding 42 new synonymies, 46 nominal taxa rediscovered, and 6 new combinations.
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- 2018
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36. Piercing Fishes: Porin Expansion and Adaptation to Hematophagy in the Vampire Snail Cumia reticulata
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Maria Vittoria Modica, Marco Gerdol, Manuela Cervelli, Marco Oliverio, Gerdol, Marco, Cervelli, Manuela, Oliverio, Marco, Modica, Maria Vittoria, Gerdol, M, Cervelli, M, Oliverio, M, and Modica, M V
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0301 basic medicine ,hematophagy ,Evolution ,Hematophagy ,Lineage (evolution) ,Snails ,Gastropoda ,Adaptation, Biological ,Porins ,Snail ,Biology ,Evolution, Molecular ,transcriptomics ,03 medical and health sciences ,Behavior and Systematics ,Phylogenetics ,biology.animal ,Genetics ,Animals ,transcriptomics, Gastropoda, hematophagy, cytolysins ,14. Life underwater ,Selection, Genetic ,cytolysins ,Molecular Biology ,Gene ,Phylogeny ,Discoveries ,Ecology, Evolution, Behavior and Systematics ,Caenogastropoda ,Ecology ,Molecular Structure ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematic ,030104 developmental biology ,Evolutionary biology ,Multigene Family ,Adaptation - Abstract
Cytolytic pore-forming proteins are widespread in living organisms, being mostly involved in both sides of the host–pathogen interaction, either contributing to the innate defense or promoting infection. In venomous organisms, such as spiders, insects, scorpions, and sea anemones, pore-forming proteins are often secreted as key components of the venom. Coluporins are pore-forming proteins recently discovered in the Mediterranean hematophagous snail Cumia reticulata (Colubrariidae), highly expressed in the salivary glands that discharge their secretion at close contact with the host. To understand their putative functional role, we investigated coluporins’ molecular diversity and evolutionary patterns. Coluporins is a well-diversified family including at least 30 proteins, with an overall low sequence similarity but sharing a remarkably conserved actinoporin-like predicted structure. Tracking the evolutionary history of the molluscan porin genes revealed a scattered distribution of this family, which is present in some other lineages of predatory gastropods, including venomous conoidean snails. Comparative transcriptomic analyses highlighted the expansion of porin genes as a lineage-specific feature of colubrariids. Coluporins seem to have evolved from a single ancestral porin gene present in the latest common ancestor of all Caenogastropoda, undergoing massive expansion and diversification in this colubrariid lineage through repeated gene duplication events paired with widespread episodic positive selection. As for other parasites, these findings are congruent with a “one-sided arms race,” equipping the parasite with multiple variants in order to broaden its host spectrum. Overall, our results pinpoint a crucial adaptive role for coluporins in the evolution of the peculiar trophic ecology of vampire snails.
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- 2018
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37. The collapse of Mitra: molecular systematics and morphology of the Mitridae (Gastropoda: Neogastropoda)
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Polina Yu. Dgebuadze, Nicolas Puillandre, Marco Oliverio, Yuri Kantor, Maria Vittoria Modica, Manfred Herrmann, Alexander E. Fedosov, and Philippe Bouchet
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0106 biological sciences ,biology ,010604 marine biology & hydrobiology ,Collapse (topology) ,Morphology (biology) ,Neogastropoda ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Mitridae ,Evolutionary biology ,molecular phylogeny ,integrative taxonomy ,biogeography ,Gastropoda ,Molecular phylogenetics ,Animal Science and Zoology ,Ecology, Evolution, Behavior and Systematics - Published
- 2018
38. Molecular detection of parasites (Trematoda, Digenea: Bucephalidae and Monorchiidae) in the European flat oyster Ostrea edulis (Mollusca: Bivalvia)
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Daniele Salvi, Marco Oliverio, Emiliano Mancini, Paolo Mariottini, Giulia Furfaro, A. Di Giulio, Manuela Cervelli, Mancini, E, Furfaro, G, Cervelli, M, Di Giulio, A, Oliverio, M, Salvi, D, Mariottini, P, Mancini, E., Furfaro, G., Cervelli, M., Di Giulio, A., Oliverio, M., Salvi, D., and Mariottini, P.
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0301 basic medicine ,Oyster ,Ostrea edulis ,030106 microbiology ,ITS2 ,Zoology ,Digenea ,03 medical and health sciences ,Mediterranean sea ,biology.animal ,Trematoda parasites ,lcsh:Zoology ,Mediterranean Sea ,Marine ecosystem ,lcsh:QL1-991 ,Mollusca ,biology ,Bivalvia ,biology.organism_classification ,Magallana gigas ,Trematoda parasite ,030104 developmental biology ,Ostrea eduli ,Animal Science and Zoology ,Trematoda ,Magallana giga - Abstract
Members of the globally distributed bivalve family Ostreidae (oysters) have a significant role in marine ecosystems and include species of high economic importance. In this work, we report the occurrence of digenean parasites of the families Bucephalidae (Prosorhynchoides sp.) and Monorchiidae (Postmonorchis sp.) in Mediterranean native populations of Ostrea edulis (but not in the introduced Magallana gigas). Molecular detection was based on DNA sequencing of the ribosomal intergenic spacer 2 (ITS2) marker. The importance of detecting the presence of overlooked digenean parasites in Mediterranean oysters is discussed.
- Published
- 2018
39. Secure Page Fusion with VUsion - https://www.vusec.net/projects/VUsion
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Kaveh Razavi, Marco Oliverio, Cristiano Giuffrida, and Herbert Bos
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010302 applied physics ,0301 basic medicine ,Flat memory model ,Page fault ,Computer science ,Computer security ,computer.software_genre ,01 natural sciences ,Extended memory ,03 medical and health sciences ,Memory leak ,030104 developmental biology ,Demand paging ,0103 physical sciences ,Virtual memory ,Page ,computer ,Zero page - Abstract
To reduce memory pressure, modern operating systems and hypervisors such as Linux/KVM deploy page-level memory fusion to merge physical memory pages with the same content (i.e., page fusion). A write to a fused memory page triggers a copy-on-write event that unmerges the page to preserve correct semantics. While page fusion is crucial in saving memory in production, recent work shows significant security weaknesses in its current implementations. Attackers can abuse timing side channels on the unmerge operation to leak sensitive data such as randomized pointers. Additionally, they can exploit the predictability of the merge operation to massage physical memory for reliable Rowhammer attacks. In this paper, we present VUsion, a secure page fusion system. VUsion can stop all the existing and even new classes of attack, where attackers leak information by side-channeling the merge operation or massage physical memory via predictable memory reuse patterns. To mitigate information disclosure attacks, we ensure attackers can no longer distinguish between fused and non-fused pages. To mitigate memory massaging attacks, we ensure fused pages are always allocated from a high-entropy pool. Despite its secure design, our comprehensive evaluation shows that VUsion retains most of the memory saving benefits of traditional memory fusion with negligible performance overhead while maintaining compatibility with other advanced memory management features.
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- 2017
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40. A molecular phylogenetic framework for the subfamily Ocenebrinae (Gastropoda, Muricidae)
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Giulia Fassio, Andrea Barco, Roland Houart, Gregory S. Herbert, and Marco Oliverio
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0106 biological sciences ,0301 basic medicine ,Species complex ,Subfamily ,Muricidae ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Monophyly ,evolution ,molecular biology ,genetics ,Ocenebra ,animal science and zoology ,Ecology, Evolution, Behavior and Systematics ,biology ,Phylogenetic tree ,Ecology ,behavior and systematics ,Ocenebrinae ,biology.organism_classification ,030104 developmental biology ,Evolutionary biology ,Molecular phylogenetics ,ecology ,ecology, evolution, behavior and systematics - Abstract
The Ocenebrinae is a subfamily of marine predatory gastropods known as oyster and mussel drills. Their current phylogenetic framework is traditionally based on shell and radular characters, but a consensus on relationships among genera is still lacking. We investigated the molecular phylogeny of Ocenebrinae using 50 species and DNA data from one nuclear (28S) and two mitochondrial (COI and 16S) genes, the largest data set so far assembled for this subfamily. We found support for the monophyly of the Ocenebrinae, and species were divided into four major lineages. Within groups, genera had similar geographic distributions, suggesting that except in a few cases, species diversification within clades occurred without range expansions. We discuss the phylogenetic distribution of a labral tooth and a sealed siphonal canal, two characteristic ocenebrine features. We also show that Ocinebrina species in the north-eastern Pacific are not monophyletic with north-eastern Atlantic and Mediterranean species, and that the Ocinebrina edwardsii species complex belongs to Ocenebra.
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- 2017
41. The southernmost record of Felimida elegantula (Philippi, 1844) (Gastropoda: Nudibranchia)
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Giulia Furfaro, Marco Oliverio, Paolo Mariottini, Furfaro, G., Oliverio, M., and Mariottini, P.
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0106 biological sciences ,0301 basic medicine ,Zoology ,Aquatic Science ,Mediterranean ,Oceanography ,Felimida elegantula ,010603 evolutionary biology ,01 natural sciences ,DNA barcoding ,03 medical and health sciences ,Gastropoda ,Single specimen ,Mollusca ,Ecology, Evolution, Behavior and Systematics ,Felimida ,Nudibranch ,biology ,Ecology ,Cytochrome c oxidase subunit I ,biology.organism_classification ,New record ,030104 developmental biology ,Genetic marker - Abstract
The southernmost record of the Mediterranean nudibranch Felimida elegantula (Philippi, 1844) is reported here. A single specimen, with a colour pattern that hampered an easy morphological identification, was collected at the Kerkennah Islands (Tunisia). DNA-barcoding analysis (with the cytochrome c oxidase subunit I genetic marker) unambiguously confirmed its identification, and radular and anatomical features conformed with those previously described. With this record, the chromatic polymorphism of F. elegantula is demonstrated to be extremely large and the known range of the species is extended to the African coast of Tunisia.
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- 2017
42. First record of Calma gobioophaga Calado and Urgorri, 2002 (Gastropoda: Nudibranchia) in the Mediterranean Sea
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Giulia Furfaro, Jakov Prkić, Maria Vittoria Modica, Leila Carmona, Paolo Mariottini, Juan Lucas Cervera, Marco Oliverio, Prkic, J., Furfaro, G., Mariottini, P., Carmona, L., Cervera, J. -L., Modica, M. -V., and Oliverio, M.
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DNA-Barcoding ,Aeolidida ,Environmental Engineering ,Mediterranean ,Range (biology) ,nudibranchs ,Zoology ,mediterranean ,Dna-barcoding ,Aquatic Science ,Oceanography ,DNA barcoding ,lcsh:Aquaculture. Fisheries. Angling ,Gobius cobitis ,Mediterranean sea ,Genus ,Calma ,Gastropoda ,new records ,aeolidida ,calma ,dna-barcoding ,mollusca ,Ecology, Evolution, Behavior and Systematics ,lcsh:SH1-691 ,biology ,Ecology ,Nudibranch ,biology.organism_classification ,New record ,Mollusca ,DNA-Barcoding, Mollusca, nudibranchs, Aeolidida, Calma, new records, Mediterranean ,Nudibranchs - Abstract
Specimens of the nudibranch genus Calma were observed under boulders at two Croatian localities while feeding on gobiid eggs. Some ambiguous morphological features compared with the original descriptions of the known species of the genus, C. glaucoides and C. gobioophaga hampered easy identification. Genetic data (COI and 16S sequences) confirmed the distinction between the two species of the genus Calma, and allowed unambiguous identification of the Croatian specimens as Calma gobioophaga. This is the first record of this species for the Mediterranean and extends its distribution range remarkably. Finally, the eggs consumed by the Croatian C. gobioophaga specimens have been taxonomically identified by using the 12S rDNA marker as Gobius cobitis.
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- 2014
43. ShK-like toxins from the vampire snail Colubraria reticulata
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Jonathan Fernando Reinoso Sanchez, Paolo Mariottini, Marco Oliverio, Marco Gerdol, Manuela Cervelli, Maria Vittoria Modica, and Andrea Pasquadibiscesceglie
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biology ,biology.animal ,Vampire ,Colubraria reticulata ,Zoology ,Snail ,Toxicology ,biology.organism_classification - Published
- 2018
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44. Hierarchical Big Data Clustering (Discussion Paper)
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Michele Ianni, Masciari E, Giuseppe Massimiliano Mazzeo, Marco Oliverio, Carlo Zaniolo, Michele, Ianni, Masciari, E, Giuseppe Massimiliano, Mazzeo, Marco, Oliverio, and Carlo, Zaniolo
- Published
- 2015
45. Testing the applicability of DNA barcoding for Mediterranean species of top-shells (Gastropoda, Trochidae,Gibbulas.l.)
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Patrick J. Schembri, Marco Oliverio, Andrea Barco, Marco Taviani, and Julian Evans
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0106 biological sciences ,trochidae ,Endangered species ,Aquatic Science ,Oceanography ,010603 evolutionary biology ,01 natural sciences ,DNA barcoding ,Gibbula ,03 medical and health sciences ,Mediterranean sea ,Genus ,dna barcoding ,14. Life underwater ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,0303 health sciences ,biology ,Ecology ,Trochidae ,endangered species ,gibbula ,biology.organism_classification ,Type species ,Evolutionary biology ,Subgenus - Abstract
We employed the COI sequences from specimens of top-shells to: (a) test the applicability of COI as a barcode marker for the trochid genus Gibbula s.l.; (b) provide a first taxonomically reliable data set of COI sequences useful for future studies; and (c) detect evidence of suspect intraspecific variability over a large geographical scale. We analysed a data set of 150 sequences from specimens morphologically ascribed to 17 putative species of Gibbula from the Mediterranean Sea and northeastern Atlantic, including the type species of 9 taxa traditionally considered as subgenera of Gibbula and representing over 50% of the roughly two dozen Mediterranean species, and also provided the DNA barcode for the endangered Maltese top-shell Gibbula nivosa. The analysis of the data set revealed that the COI is an effective barcode for the identification of the northeastern Atlantic top-shells, and also provides a tool to detect cryptic diversity.
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- 2013
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46. Molecular data reveal cryptic lineages within the northeastern Atlantic and Mediterranean small mussel drills of theOcinebrina edwardsiicomplex (Mollusca: Gastropoda: Muricidae)
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Giuseppe Bonomolo, Andrea Barco, Fabio Crocetta, Marco Oliverio, and Roland Houart
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0106 biological sciences ,0303 health sciences ,Species complex ,Ocinebrina ingloria ,biology ,Ecology ,Muricidae ,Zoology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,DNA barcoding ,03 medical and health sciences ,Mediterranean sea ,Taxon ,Animal Science and Zoology ,Type locality ,14. Life underwater ,Clade ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology - Abstract
We used a molecular phylogenetic approach to investigate species delimitations and diversification in the mussel drills of the Ocinebrina edwardsii complex by means of a combination of nuclear (internal transcribed spacer 2, ITS2) and mitochondrial [cytochrome oxidase subunit I (COI) and 16S] sequences. Our sample included 243 specimens ascribed to seven currently accepted species from 51 sites. Five of the samples were from either the type locality of a nominal species or a close nearby locality (O. edwardsii from Corsica, O. carmelae and O. piantonii from the Kerkennah Islands, O. hispidula from the Gulf of Gabes and O. leukos from the Canary Islands), one from the inferred original locality (O. ingloria from Venice Lagoon), and specimens assigned in the recent literature to O. nicolai. We used a combination of distance- and tree-based species delimitation methods to identify Molecular Operational Taxonomic Units (MOTUs) to compare with the a priori species identifications. The consensus tree obtained by BEAST on the COI alignment allows the recognition of several distinct clades supported by the three species delimitation methods employed. The eight-MOTUs scenario, shared by the Automatic Barcode Gap Discovery (ABGD) and Generalized Mixed Yule-Coalescent (GMYC) methods, comprises the following major clades: clade A contains the south Tunisian species Ocinebrina piantonii Cecalupo, Buzzurro & Mariani from which the sympatric taxon O. carmelae Cecalupo, Buzzurro & Mariani (new synonym) cannot be separated; clades B and C bring together all populations from the Aegean Sea and some from the Ionian Sea, respectively; clade D groups, on the one hand, the south Tunisian samples morphologically assigned to O. hispidula Pallary and, on the other, Atlantic and Alboran Sea samples (including the Canarian taxon O. leukos Houart); clade E includes a sample from the type locality of O. edwardsii and several samples from the Tyrrhenian Sea; clades F and G correspond to a few samples from the Venice Lagoon and the Tyrrhenian Sea, respectively; clade H groups the bulk of samples from the Adriatic Sea, including samples from the Venice Lagoon morphologically identified as Ocinebrina ingloria (Crosse), and some from the Ionian Sea. No final conclusions could be reached to reconcile the currently recognized morphological taxa with the clades suggested by the COI data. The geographical structure proposed by the mitochondrial markers is similar to that found in other marine invertebrates and partially corresponds to the species defined by shell characters. We propose here a framework for the revision of the Ocinebrina edwardsii species complex, suggesting a geographical pattern for the diversification of this group in the studied area. © 2013 The Linnean Society of London
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- 2013
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47. Genetic characterization of central Mediterranean stocks of the loggerhead turtle (Caretta caretta) using mitochondrial and nuclear markers, and conservation implications
- Author
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Claudia Eleni, Giovanni Scillitani, Angela Mastrogiacomo, Rossella Carlini, Luisa Garofalo, Dino Scaravelli, Daniela Freggi, F Paolo Casale, Toni Mingozzi, Marco Oliverio, Nicola Novarini, Leyla Knittweis, Andrea Novelletto, Donatella Gelli, and Carmen Mifsud
- Subjects
0106 biological sciences ,Mediterranean climate ,Rookery ,geography ,geography.geographical_feature_category ,Ecology ,biology ,010604 marine biology & hydrobiology ,Foraging ,Aquatic Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Loggerhead sea turtle ,Gene flow ,Bycatch ,Fishery ,Peninsula ,14. Life underwater ,Conservation biology ,Nature and Landscape Conservation - Abstract
In migratory species female- and male-mediated gene flow are important for defining relevant Management Units, and for evaluating connectivity between these and their respective foraging grounds. The stock composition at five Mediterranean foraging areas was investigated by analysing variation in the mitochondrial D-loop and six microsatellite loci in a sample of 268 loggerhead turtles (Caretta caretta) stranded or accidentally caught by fisheries. This involved a comprehensive Mixed Stock Analysis which considers also recent data from major rookeries in Libya and Turkey, and the generation of a standardized nomenclature of allele sizes at the microsatellite loci. The results indicate: that the north Adriatic, the Tunisian continental shelf, the waters around Malta and the Italian Ionian Sea represent important areas for the conservation of rookeries in Greece, Libya and Turkey, respectively; that waters off the Italian peninsula and the islands of Lampedusa and Malta are mainly inhabited by individuals of Mediterranean origin, with a major contribution from the nearest and largest colonies, while Atlantic turtles are restricted to the western areas; that specific migratory routes exist from rookeries to foraging grounds; a poor bi-parental genetic structuring, which suggests a high male-mediated gene flow in the Mediterranean; mixing of small turtles in waters distant from natal rookeries, and recovery of structuring for large-sized individuals; and that uncommon mtDNA haplotypes are more powerful markers than microsatellite alleles in assessing an individual's origin, owing to their higher geographic specificity. Copyright © 2013 John Wiley & Sons, Ltd.
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- 2013
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48. Cryptic diversity in a chirally variable land snail
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Marco Oliverio, Maria Vittoria Modica, A. Hallgass, Paolo Colangelo, and Andrea Barco
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0301 basic medicine ,Enidae ,biology ,Ecology ,Land snail ,Stylommatophora ,chirality ,Zoology ,COI ,Jaminia ,species delimitation ,Animal Science and Zoology ,15. Life on land ,Subspecies ,biology.organism_classification ,Pulmonata ,Gene flow ,03 medical and health sciences ,030104 developmental biology ,Gastropoda ,14. Life underwater ,Heterobranchia - Abstract
Jaminia quadridens (Mollusca: Gastropoda: Heterobranchia: Pulmonata: Stylommatophora: Enidae) is a land snail living up to 2400 m above sea level on calcareous meadow slopes. It is widely distributed in Central and Southern Europe, with two subspecies currently recognised (J. quadridens quadridens and J. quadridens elongata). Like other Enidae, the genus Jaminia is sinistrally coiled, whilst the vast majority of gastropods are dextral. Chirality in snails is determined in the early embryonic stages by a single gene with maternal effect. Following the discovery of reversed (dextral) populations in Abruzzi, we investigated the genetic variability of Jaminia quadridens in central and southern Italy. In fact, reversal of chirality is often associated with extremely rapid speciation in snails ("single gene speciation"), as gene flow between opposite chiral morphs can be severely reduced by pre-copula isolation mechanisms. Phylogenetic analyses with different inference methods, haplotype analyses and species delimitation analyses were carried out on cytochtome oxydase subunit I (COI) sequences of 126 Jaminia specimens from central and southern Italy, Sardinia and Provence. Our results suggested a complex framework, with at least five lineages that may represent distinct species, in agreement with biogeographic patterns previously reported for other terrestrial taxa. Southern populations of an ancestral stock probably underwent allopatric speciation while surviving in glacial refugia during the Pleistocene. Colonization of central Italy may be recent, with evidences of current gene flow between populations of a single species, which includes reversed individuals. The appearance of chiral reversal was statistically associated with marginal demes but apparently not related to other biological, ecological or historical factors. As land snails are generally severely affected by habitat degradation, due to their ecological requirements, our results have important implications for conservation. J. quadridens in Italy may comprise a complex of distinct species, mostly with restricted ranges, which may suffer from environmental changes more than a single, widely distributed species would.
- Published
- 2016
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49. Big Data Techniques For Supporting Accurate Predictions of Energy Production From Renewable Sources
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Aleksandra Rashkovska, Donato Malerba, Roberto Corizzo, Michele Ianni, Fabio Fumarola, Elio Masciari, Marco Oliverio, Gaspare Maria, Michelangelo Ceci, Michelangelo, Ceci, Roberto, Corizzo, Fabio, Fumarola, Michele, Ianni, Donato, Malerba, Gaspare, Maria, Masciari, E, Marco, Oliverio, and Aleksandra, Rashkovska
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Big Data ,Database ,Exploit ,Computer science ,Energy management ,business.industry ,Data management ,Big data ,computer.software_genre ,Industrial engineering ,Renewable energy ,Data access ,Energy Production Prediction ,Server ,Production (economics) ,business ,computer - Abstract
Predicting the output power of renewable energy production plants distributed on a wide territory is a really valuable goal, both for marketing and energy management purposes. Vi-POC (Virtual Power Operating Center) project aims at designing and implementing a prototype which is able to achieve this goal. Due to the heterogeneity and the high volume of data, it is necessary to exploit suitable Big Data analysis techniques in order to perform a quick and secure access to data that cannot be obtained with traditional approaches for data management. In this paper, we describe Vi-POC -- a distributed system for storing huge amounts of data, gathered from energy production plants and weather prediction services. We use HBase over Hadoop framework on a cluster of commodity servers in order to provide a system that can be used as a basis for running machine learning algorithms. Indeed, we perform one-day ahead forecast of PV energy production based on Artificial Neural Networks in two learning settings, that is, structured and non-structured output prediction. Preliminary experimental results confirm the validity of the approach, also when compared with a baseline approach.
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- 2014
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50. Sympatric sibling species: the case of Caloria elegans and Facelina quatrefagesi (Gastropoda: Nudibranchia)
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Giulia Furfaro, Paolo Mariottini, Maria Vittoria Modica, Egidio Trainito, Mauro Doneddu, and Marco Oliverio
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lcsh:SH1-691 ,molluscs ,filogenia ,Facelinidae ,SH1-691 ,Molluscs ,sistemática ,Aquatic Science ,Oceanography ,phylogeny ,lcsh:Aquaculture. Fisheries. Angling ,taxonomía integrada ,Integrative taxonomy ,Phylogeny ,Systematics ,Aquaculture. Fisheries. Angling ,systematics ,integrative taxonomy ,moluscos - Abstract
The aeolid nudibranch Caloria elegans (Facelinidae) is quite common in the Mediterranean Sea and eastern Atlantic Ocean and is easily recognized by the presence of a typical black spot at the apical portion of its cerata. Facelina quatrefagesi (Facelinidae) was long considered as a synonym of C. elegans until recently, when it was re-evaluated as a valid species based mainly on rhinophore morphology. In order to definitively assess the status of these aeolid taxa, we employed an integrative taxonomy approach using the nuclear H3 and the two mitochondrial cytochrome oxidase subunit I and 16S markers. The molecular analyses clearly showed that, although morphologically closely related to C. elegans, F. quatrefagesi is a valid species. El nudibranquio aeolido Caloria elegans (Facelinidae) es común en el Mediterráneo y en el noreste Atlántico siendo fácilmente reconocido por la presencia de una típica mancha negra en la porción apical de los ceratos. Facelina quatrefagesi (Facelinidae) por mucho tiempo ha sido considerado como un sinónimo de C. elegans hasta hace poco cuando ha sido reconsiderada como especie válida basándose principalmente en la morfología de los rinóforos. Para asignar definitivamente el estado de estos taxones aeolidos, hemos utilizado un enfoque de taxonomía integrada, usando los marcadores moleculares H3 (nuclear), COI y 16S (mitocondriales). Los análisis moleculares han mostrado claramente que F. quatrefagesi, aunque morfológicamente sea muy parecido a C. elegans, es una especie válida.
- Published
- 2016
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