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Decreases in shorebird populations are increasingly evident worldwide, especially in the East Asian—Australasian Flyway (EAAF). To arrest these declines, it is important to understand the scale of both the problem and the solutions. We analysed an expansive Australian citizen-science dataset, spanning the period 1973 to 2014, to explore factors related to differences in trends among shorebird populations in wetlands throughout Australia. Of seven resident Australian shorebird species, the four inland species exhibited continental decreases, whereas the three coastal species did not. Decreases in inland resident shorebirds were related to changes in availability of water at non-tidal wetlands, suggesting that degradation of wetlands in Australia's interior is playing a role in these declines. For migratory shorebirds, the analyses revealed continental decreases in abundance in 12 of 19 species, and decreases in 17 of 19 in the southern half of Australia over the past 15 years. Many trends were strongly associated with continental gradients in latitude or longitude, suggesting some large-scale patterns in the decreases, with steeper declines often evident in southern Australia. After accounting for this effect, local variables did not explain variation in migratory shorebird trends between sites. Our results are consistent with other studies indicating that decreases in migratory shorebird populations in the EAAF are most likely being driven primarily by factors outside Australia. This reinforces the need for urgent overseas conservation actions. However, substantially heterogeneous trends within Australia, combined with declines of inland resident shorebirds indicate effective management of Australian shorebird habitat remains important.

1. Millions of shorebirds migrate each year through a small number of highly productive staging areas where they often conflict with fisheries interests. Delaware Bay, USA, is a major shorebird stopover site where, in spring, many thousands of shorebirds undergo rapid mass gain by feeding on the eggs of commercially harvested horseshoe crabs Limulus polyphemus. 2. Environmental factors may cause deviations from the best migration schedule. We used within-year mass gain data from red knot Calidris canutus caught in Delaware Bay between 1998 and 2005 to determine the degree of flexibility individuals have to vary migration speed. 3. Mass gain by birds below 133 g was shown to comprise 15.3% fat (39 kJ g(-1)), the remainder being lean mass (6 kJ g(-1)). Above this critical level, fat comprised 83.9% of mass deposition. The rates of energy deposition (kJ d(-1)) were therefore fundamentally different between the two states but were among the highest ever recorded among vertebrates (5-7 x basic metabolic rate). 4. A total of 36-62% of the variation in observed rates of energy deposition between 1998 and 2002 was explained by a year factor, date and mass at initial capture and interaction terms, such that light-weight birds at the end of May had rates of mass gain or energy deposition two to three times higher than birds of similar mass in mid-May, indicating that birds were attempting to achieve a certain mass by a certain date. In 2003 and 2005, this relationship broke down as a result of lower densities of eggs. 5. Synthesis and application. The maintenance of high densities of crab eggs required for high rates of mass gain in red knot requires severe cuts in, or the complete cessation of, the crab harvest, reduced human and raptor-related disturbance as well as management of beaches to provide sufficient crab-spawning habitat. These findings are widely applicable to other systems where harvesting activities come into conflict with migrating animals and show that certain sections of the population, in this case the long-distance migrants from South America, will be impacted more than short-distance migrants whose physiology may give them access to altto alternative food resources.