96 results on '"Lingxue Yu"'
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2. Climate Change Impacts on Agroecosystems in China: Processes, Mechanisms and Prospects
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Lun Bao, Lingxue Yu, Ying Li, Fengqin Yan, Vincent Lyne, and Chunying Ren
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Geography, Planning and Development ,General Earth and Planetary Sciences - Published
- 2023
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3. Screening and identification of the dominant antigens of the African swine fever virus
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Zhaoyang Xu, Yifan Hu, Junbo Li, Ancheng Wang, Xin Meng, Lingchao Chen, Jianchao Wei, Wu Tong, Ning Kong, Lingxue Yu, Hai Yu, Tongling Shan, Guangzhi Tong, Guihua Wang, and Hao Zheng
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General Veterinary - Abstract
African swine fever is a highly lethal contagious disease of pigs for which there is no vaccine. Its causative agent African swine fever virus (ASFV) is a highly complex enveloped DNA virus encoding more than 150 open reading frames. The antigenicity of ASFV is still unclear at present. In this study, 35 proteins of ASFV were expressed by Escherichia coli, and ELISA was developed for the detection of antibodies against these proteins. p30, p54, and p22 were presented as the major antigens of ASFV, positively reacting with all five clinical ASFV-positive pig sera, and 10 pig sera experimentally infected by ASFV. Five proteins (pB475L, pC129R, pE199L, pE184L, and pK145R) reacted well with ASFV-positive sera. The p30 induced a rapid and strong antibody immune response during ASFV infection. These results will promote the development of subunit vaccines and serum diagnostic methods against ASFV.
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- 2023
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4. The rPRRSV-E2 strain exhibited a low level of potential risk for virulence reversion
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Yifeng Jiang, Fei Gao, Liwei Li, Yanjun Zhou, Wu Tong, Lingxue Yu, Yujiao Zhang, Kuan Zhao, Haojie Zhu, Changlong Liu, Guoxin Li, and Guangzhi Tong
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General Veterinary - Abstract
Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) and Classical Swine Fever Virus (CSFV) are two important pathogens, which cause serious impact on swine industry worldwide. In our previous research, rPRRSV-E2, the recombinant PRRSV expressing CSFV E2 protein, could provide sufficient protection against the lethal challenge of highly pathogenic PRRSV and CSFV, and could maintained genetically stable in vitro. Here, to evaluate the virulence reversion potential risk, rPRRSV-E2 had been continuously passaged in vivo, the stability of E2 expression and virulence of the passage viruses were analyzed. The results showed that no clinical symptoms or pathological changes could be found in the inoculated groups, and there were no significant differences of viraemia among the test groups. Sequencing and IFA analysis showed that the coding gene of exogenous CSFV E2 protein existed in the passaged viruses without any sequence mutations, deletions or insertions, and could expressed steadily. It could be concluded that the foreign CSFV E2 gene in the genome of rPRRSV-E2 could be maintained genetically stable in vivo, and rPRRSV-E2 strain had relatively low level of potential risk for virulence reversion.
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- 2023
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5. Forecasting Spring Maize Yield Using Vegetation Indices and Crop Phenology Metrics from Uav Observations
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Lun Bao, Xuan Li, Jiaxin Yu, Guangshuai Li, Xinyue Chang, Lingxue Yu, and Ying Li
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- 2023
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6. Newly Characterized Porcine Epidemic Diarrhea Virus GII Subtype Strain
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Jiarong Yu, Pengfei Chen, Ruilin Liu, Mengqin Lao, Junrui Zhu, Shuting Zhou, Jijie Jiang, Shijing Huang, Wu Tong, Yifeng Jiang, Fei Gao, Lingxue Yu, Hai Yu, Changlong Liu, Zhibiao Yang, Guangzhi Tong, and Yanjun Zhou
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General Veterinary ,General Immunology and Microbiology ,General Medicine - Abstract
Diarrhea outbreaks in piglets on pig farms are commonly attributed to porcine epidemic diarrhea virus (PEDV) infection. This research analyzed the S gene prevalence variation and recombination patterns in PEDV GII strains. Throughout the previous two years, 172 clinical samples of piglet diarrhea have been collected, from which 24 PEDV isolates have been isolated. Analysis of the evolutionary relationships among all 24 S genes revealed that 21 were most closely related to strains within the GII-a subgroup. The 2 isolates grouped into one clade with the GII-b subgroup. According to the mutation analysis of the amino acids (aa) that encode the S protein, 43 of the common aa in strains of the GII subtype were found to have undergone a change in polarity or charge, and 36 of these aa had a mutation frequency of more than 90%. Three different aa mutation sites were identified as exclusive to GII-a subtype strains. The genomes of three PEDV isolates were sequenced, and the resulting range in genome length was 28,035−28,041 nt. The results of recombination analysis showed that the SD1 isolate is a novel strain recombinant from the foreign S-INDEL strain and a domestic GII subtype strain. Based on the findings, the PEDV GII-a strain has been the most circulating strain in several parts of China during the previous two years. Our study reveals for the first time the unique change of aa mutations in the S protein of the GII-a subtype strain and the new characteristics of the recombination of foreign strains and domestic GII subtype strains, indicating that it is crucial to monitor the epidemic dynamics of PEDV promptly to prevent and control the occurrence of PED effectively.
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- 2023
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7. hnRNP K Degrades Viral Nucleocapsid Protein and Induces Type I IFN Production to Inhibit Porcine Epidemic Diarrhea Virus Replication
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Wenzhen Qin, Ning Kong, Chunmei Wang, Sujie Dong, Huanjie Zhai, Xueying Zhai, Xinyu Yang, Chenqian Ye, Manqing Ye, Wu Tong, Changlong Liu, Lingxue Yu, Hao Zheng, Hai Yu, Daoliang Lan, Wen Zhang, Guangzhi Tong, and Tongling Shan
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Swine Diseases ,Swine ,Porcine epidemic diarrhea virus ,Ubiquitin-Protein Ligases ,Immunology ,Nucleocapsid Proteins ,Virus Replication ,Antiviral Agents ,Microbiology ,Virus-Cell Interactions ,Heterogeneous-Nuclear Ribonucleoprotein K ,Virology ,Insect Science ,Chlorocebus aethiops ,Myeloid Differentiation Factor 88 ,Interferon Type I ,Animals ,Interferons ,Coronavirus Infections ,Vero Cells - Abstract
Porcine epidemic diarrhea virus (PEDV) is a re-emerging enteric coronavirus currently spreading in several nations and inflicting substantial financial damages on the swine industry. The currently available coronavirus vaccines do not provide adequate protection against the newly emerging viral strains. It is essential to study the relationship between host antiviral factors and the virus and to investigate the mechanisms underlying host immune response against PEDV infection. This study shows that heterogeneous nuclear ribonucleoprotein K (hnRNP K), the host protein determined by the transcription factor KLF15, inhibits the replication of PEDV by degrading the nucleocapsid (N) protein of PEDV in accordance with selective autophagy. hnRNP K was found to be capable of recruiting the E3 ubiquitin ligase, MARCH8, aiming to ubiquitinate N protein. Then, it was found that the ubiquitinated N protein could be delivered into autolysosomes for degradation by the cargo receptor NDP52, thereby inhibiting PEDV proliferation. Moreover, based on the enhanced MyD88 expression, we found that hnRNP K activated the interferon 1 (IFN-1) signaling pathway. Overall, the data obtained revealed a new mechanism of hnRNP K-mediated virus restriction wherein hnRNP K suppressed PEDV replication by degradation of viral N protein using the autophagic degradation pathway and by induction of IFN-1 production based on upregulation of MyD88 expression. IMPORTANCE The spread of the highly virulent PEDV in many countries is still leading to several epidemic and endemic outbreaks. To elucidate effective antiviral mechanisms, it is important to study the relationship between host antiviral factors and the virus and to investigate the mechanisms underlying host immune response against PEDV infection. In the work, we detected hnRNP K as a new host restriction factor which can hinder PEDV replication through degrading the nucleocapsid protein based on E3 ubiquitin ligase MARCH8 and the cargo receptor NDP52. In addition, via the upregulation of MyD88 expression, hnRNP K could also activate the interferon (IFN) signaling pathway. This study describes a previously unknown antiviral function of hnRNP K and offers a new vision toward host antiviral factors that regulate innate immune response as well as a protein degradation pathway against PEDV infection.
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- 2022
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8. Nonstructural Protein 2 Is Critical to Infection Efficiency of Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus on PAMs and Influence Virulence In Vivo
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Jiazeng Chen, Lingxue Yu, Yanjun Zhou, Shen Yang, Yun Bai, Qian Wang, Jinmei Peng, Tongqing An, Fei Gao, Liwei Li, Chao Ye, Changlong Liu, Guangzhi Tong, Xuehui Cai, Zhijun Tian, and Yifeng Jiang
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Infectious Diseases ,Virology ,PRRSV ,infection efficiency ,PAM ,virulence - Abstract
Porcine reproductive and respiratory syndrome (PRRS) is an important viral disease, causing significant economic losses to the swine industry worldwide. Atypical cases caused by highly pathogenic PRRS virus (HP-PRRSV) emerged in 2006 in China. The vaccine strain HuN4-F112 has been developed from the wild-type HP-PRRSV HuN4 through repeated passages on MARC-145 cells. However, the mechanisms of attenuation have yet to be defined. Previous studies have shown that the vaccine strain HuN4-F112 could not effectively replicate in porcine alveolar macrophages (PAMs). In the present study, a series of chimeric and mutant PRRSVs were constructed to investigate regions associated with the virus attenuation. Firstly, the corresponding genome regions (ORF1a, ORF1b and ORFs 2-7) were exchanged between two infectious clones of HuN4 and HuN4-F112, and then the influence of small regions in ORF1a and ORF2-7 was evaluated, then influence of specific amino acids on NSP2 was tested. NSP2 was determined to be the key gene that regulated infection efficiency on PAMs, and amino acids at 893 and 979 of NSP2 were the key amino acids. The results of in vivo study indicated that NSP2 was not only important for infection efficiency in vitro, but also influenced the virulence, which was indicated by the results of survival rate, temperature, viremia, lung score and tissue score.
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- 2022
9. GEB
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Lingxue Yu
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Data for the paper.
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- 2022
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10. GEB
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Lingxue Yu
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Data for the paper.
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- 2022
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11. Impact of Saline-Alkali Land Greening on the Local Surface Temperature—A Multiscale Assessment Based on Remote Sensing
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Bingxia Xin, Lingxue Yu, Guangshuai Li, Yue Jiao, Tingxiang Liu, Shuwen Zhang, and Zhongying Lei
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saline–alkali land greening ,land surface temperature ,multiscale evaluation ,western Jilin ,General Earth and Planetary Sciences - Abstract
In recent years, the conversion of saline-alkali land to rice fields has become the most dominant land use change feature in western Jilin, leading to significant surface greening. Saline–alkali land and paddy fields have distinct surface biophysical properties; however, there is a lack of systematic assessment of the moderating effect of planting rice on saline–alkali land on regional climate by changing surface properties. In this paper, multiscale data on the surface temperature of saline–alkali land and paddy fields were obtained using 1 km MODIS product, 30 m Landsat 8 satellite imagery and centimeter-scale UAV imagery in Da’an City, western Jilin as the study area, and the various characteristics of the surface temperature of saline-alkali land and paddy fields in different months of the year and at different times of the day were analyzed. Furthermore, the effect of rice cultivation in saline–alkali land on the local surface temperature was assessed using a space-for-time approach. The results based on satellite observations including both MODIS and Landsat showed that the surface temperature of saline–alkali land was significantly higher than that of paddy fields during the crop growing season, especially in July and August. The high temporal resolution MODIS LST data also indicated the paddy fields cool the daytime surface temperature, while warming the nighttime surface temperature, which was in contrast for saline–alkali land during the growing season. High-resolution UAV observations in July confirmed that the cooling effect of paddy fields was most significant at the middle of day. From the biophysical perspective, the reclamation of saline–alkali land into paddy fields leads to an increase in leaf area index, followed by a significant increase in evapotranspiration. Meanwhile, rice cultivation in saline–alkali land reduces surface albedo and increases surface net radiation. The trade-off relationship between the two determines the seasonal difference in the surface temperature response of saline–alkali land for rice cultivation. At the same time, the daily cycle of crop evapotranspiration and the thermal insulation effect of paddy fields at night are the main reasons for the intraday difference in surface temperature between saline–alkali land and paddy field. Based on the multiscale assessment of the impact of rice cultivation in saline-alkali land on surface temperature, this study provides a scientific basis for predicting future regional climate change and comprehensively understanding the ecological and environmental benefits of saline–alkali land development.
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- 2022
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12. KLF16 inhibits PEDV replication by activating the type I IFN signaling pathway
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Sujie Dong, Ning Kong, Haiyan Shen, Youwen Li, Wenzhen Qin, Huanjie Zhai, Xueying Zhai, Xinyu Yang, Chenqian Ye, Manqing Ye, Changlong Liu, Lingxue Yu, Hao Zheng, Wu Tong, Hai Yu, Wen Zhang, Guangzhi Tong, and Tongling Shan
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TNF Receptor-Associated Factor 6 ,Swine Diseases ,General Veterinary ,Swine ,Porcine epidemic diarrhea virus ,Kruppel-Like Transcription Factors ,General Medicine ,Virus Replication ,Microbiology ,Antiviral Agents ,Cell Line ,Chlorocebus aethiops ,Animals ,Interferons ,Coronavirus Infections ,Vero Cells ,Signal Transduction - Abstract
KLF16, a member of KLFs (Krüppel-like factors), contributes to the progression of a variety of cancer types. There is, however, still uncertain regarding the role of KLF16 in viral replication and the signaling mechanism of type I IFN. It was discovered that KLF16 inhibited the replication of porcine epidemic diarrhea virus (PEDV) through the type I IFN signaling pathway. Besides, it can also be found that the expression of KLF16 was down-regulated after PEDV infection of LLC-PK1 cells. Furthermore, overexpression of KLF16 inhibited the replication of PEDV in Vero cells as well as LLC-PK1 cells, whereas the replication of PEDV was promoted by the knockdown of KLF16. KLF16 up-regulated the expression of interferons (IFNs) via the TRAF6-pTBK1-pIRF3 pathway with the aim of promoting the host antiviral innate immune response. In addition, the obtained findings proved that KLF16 plays a novel role in antiviral action, thereby offering novel possibilities for preventing and controlling PEDV.
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- 2022
13. Evaluating Ecosystem Services and Trade-Offs Based on Land-Use Simulation: A Case Study in the Farming–Pastoral Ecotone of Northern China
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Shuting Bai, Jiuchun Yang, Yubo Zhang, Fengqin Yan, Lingxue Yu, and Shuwen Zhang
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Global and Planetary Change ,Ecology ,land-use change ,scenario analysis ,ecosystem services ,trade-off and synergy ,Nature and Landscape Conservation - Abstract
Evaluating the impacts of land-use change (LUC) on ecosystem services (ESs) is necessary for regional sustainable development, especially for the farming–pastoral ecotone of northern China (FPENC), an ecologically sensitive and fragile region. This study aimed to assess the impacts of LUC on the ESs and provide valuable information for regional planning and management in the FPENC. To accomplish this, we assessed LUC in the FPENC from 2010 to 2020 and simulated land-use patterns in 2030 under three plausible scenarios: the business as usual scenario (BAUS), economic development scenario (EDS), and ecological protection scenario (EPS). Then, we quantified five ESs (including crop production, water yield, soil retention, water purification, and carbon storage) for 2020–2030 and analyzed the trade-offs and synergies among ESs in all scenarios. The results show that FPENC experienced expanding farming land and built-up land throughout 2010–2020. Under the BAUS and EDS from 2000 to 2030, especially EDS, the increase in farming land and built-up land will continue. As a result, crop production and water yield will increase, while soil retention, water purification, and carbon storage will decrease. In contrast, EPS will increase soil retention, water purification, and carbon storage at the cost of a decline in crop production and water yield. These results can provide effective reference information for future regional planning and management in the farming–pastoral ecotone.
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- 2022
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14. Nrf2 affects hydroquinone-induces cell cycle arrest through the p16/pRb signaling pathway and antioxidant enzymes
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Lin Chen, Lu Zhai, Yuting Gao, Zheming Cui, Lingxue Yu, Delong Zhu, Huanwen Tang, and Hao Luo
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Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,General Medicine ,Pollution - Abstract
Hydroquinone (HQ), a well-known carcinogenic agent, induces oxidative stress, cell cycle arrest, apoptosis, and malignant transformation. As an antioxidant actor, the nuclear factor erythroid 2-related factor 2 (Nrf2) drives adaptive cellular protection in response to oxidative stress. The human lymphoblastoid cell line (TK6 cells) is widely used as a model for leukemia researches. In the present study, we focused on exploring whether Nrf2 regulatory cell cycle in TK6 cells upon HQ treatment and the underlying mechanisms. The results showed that the cell cycle arrest in TK6 cells induced by hydroquinone was accompanied by activation of the Nrf2 signaling pathway. We further clarified that Nrf2 loss accelerated cell cycle progression from G0/G1 to S and G2/M phases and promoted ROS production by downregulating the expression of SOD and GSH. Western blotting analysis indicated that Nrf2 regulated cell cycle progression via p16/pRb signaling pathways. Therefore, we conclude that Nrf2 is engaged in HQ-induced cell cycle arrest as well through p16/pRb and antioxidant enzymes.
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- 2022
15. TRIM21 inhibits porcine epidemic diarrhea virus proliferation by proteasomal degradation of the nucleocapsid protein
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Hao Zheng, Dage Sun, Hai Yu, Hua Wang, Ning Kong, Wenzhen Qin, Yajuan Jiao, Xiaoyong Chen, Lingxue Yu, Tongling Shan, Guangzhi Tong, Sujie Dong, Wu Tong, and Huanjie Zhai
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Proteasome Endopeptidase Complex ,Swine ,Ubiquitin-Protein Ligases ,Down-Regulation ,Endogeny ,Virus Replication ,Cell Line ,03 medical and health sciences ,Ubiquitin ,Cell Line, Tumor ,Virology ,Antibody receptor ,Chlorocebus aethiops ,Animals ,Humans ,Vero Cells ,Cell Proliferation ,030304 developmental biology ,0303 health sciences ,Gene knockdown ,Host Microbial Interactions ,biology ,030306 microbiology ,Porcine epidemic diarrhea virus ,Ubiquitination ,General Medicine ,Nucleocapsid Proteins ,biology.organism_classification ,Ubiquitin ligase ,Cytosol ,HEK293 Cells ,Ribonucleoproteins ,Proteolysis ,biology.protein ,Original Article ,Coronavirus Infections ,TRIM Family ,HeLa Cells - Abstract
Tripartite motif protein 21 (TRIM21) is an E3 ubiquitin ligase and cytosolic antibody receptor of the TRIM family. Previous reports have indicated that TRIM21 plays an important role during viral infection. This study aimed at examining the role of TRIM21 in the replication of porcine epidemic diarrhea virus (PEDV) and showed that TRIM21 inhibits PEDV proliferation by targeting and degrading the nucleocapsid (N) protein through the proteasomal pathway. Furthermore, the endogenous expression of TRIM21 was found to be downregulated by PEDV infection in Vero and LLC-PK1 cells. Overexpression of TRIM21 inhibited PEDV replication, whereas knockdown of TRIM21 increased viral titers and N protein levels. TRIM21 was found to interact and colocalize with the N protein, and the TRIM21-mediated antiviral effect was dependent on its ubiquitin ligase activity, which engages in polyubiquitination and degradation of the N protein in a proteasome-dependent manner. Taken together, these findings provide information about the role of TRIM21 in PEDV proliferation and increase our understanding of host-virus interactions. Supplementary Information The online version contains supplementary material available at 10.1007/s00705-021-05080-4.
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- 2021
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16. Future climate change for major agricultural zones in China as projected by CORDEX-EA-II, CMIP5 and CMIP6 ensembles
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Entao Yu, Dongwei Liu, Jianjun Yang, Jianqi Sun, Lingxue Yu, and Martin Peter King
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Atmospheric Science - Published
- 2023
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17. Temporal Trends and Future Projections of Accumulated Temperature Changes in China
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Xuan Li, Qian Yang, Lun Bao, Guangshuai Li, Jiaxin Yu, Xinyue Chang, Xiaohong Gao, and Lingxue Yu
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accumulated temperature ,spatial and temporal variation ,interpretable machine learning ,main influence factor ,CMIP6 ,Agronomy and Crop Science - Abstract
The Fifth IPCC Assessment Report indicates that climate change will affect crop growth and threaten the stability of food systems. Accumulated temperature, which is closely related to vegetation phenology and cropping systems, is an important indicator of heat in a region. Studying the history and future accumulated temperature changes can provide scientific reference for the change of crop phenology and cropping system, which is important for the improvement of grain production in China. Based on the MK trend test, MK abrupt change test and interpretable machine learning model, this study analyzes the spatial and temporal variation of accumulated temperature in China from 1979 to 2018, predicts its future variation based on CMIP6, and investigates the dominant influencing factors among different agricultural regions. The study found that (1) the accumulated temperature belt shows a northward shift and retreat trend toward higher altitudes, and the area of the high accumulated temperature belt increases year by year, leading to the narrowing of the area of the low accumulated temperature belt year by year, and the trend remains unchanged under the future scenario; meanwhile, the northward shift trend of the accumulated temperature belt is greatly mitigated and curbed under the SSP126 scenario. (2) The changes of accumulated temperature belt are mainly influenced by the increase of accumulated temperature duration days, and secondarily by the increase of temperature. The contribution brought by the first day of accumulated temperature from 1979 to 2018 is greater than that brought by the last day of accumulated temperature, while in the future scenario, on the contrary, changes in vegetation phenology delay should be given more attention.
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- 2023
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18. Vegetation greening in China and its effect on summer regional climate
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Yongkang Xue, Ismaila Diallo, and Lingxue Yu
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Multidisciplinary ,Greening ,medicine ,Environmental science ,Forestry ,medicine.symptom ,China ,Vegetation (pathology) - Published
- 2021
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19. ATG4B hinders porcine epidemic diarrhea virus replication through interacting with TRAF3 and activating type-I IFN signaling
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Sujie Dong, Ning Kong, Wenzhen Qin, Huanjie Zhai, Xueying Zhai, Xinyu Yang, Chenqian Ye, Manqing Ye, Changlong Liu, Lingxue Yu, Hao Zheng, Wu Tong, Hai Yu, Wen Zhang, Youwen Li, Guangzhi Tong, and Tongling Shan
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Swine Diseases ,General Veterinary ,TNF Receptor-Associated Factor 3 ,Swine ,Porcine epidemic diarrhea virus ,Chlorocebus aethiops ,Animals ,General Medicine ,Coronavirus Infections ,Virus Replication ,Microbiology ,Vero Cells ,Signal Transduction - Abstract
Autophagy-related 4B (ATG4B) is found to exert a vital function in viral replication, although the mechanism through which ATG4B activates type-I IFN signaling to hinder viral replication remains to be explained, so far. The current work revealed that ATG4B was downregulated in porcine epidemic diarrhea virus (PEDV)-infected LLC-PK1 cells. In addition, ATG4B overexpression inhibited PEDV replication in both Vero cells and LLC-PK1 cells. On the contrary, ATG4B knockdown facilitated PEDV replication. Moreover, ATG4B was observed to hinder PEDV replication by activating type-I IFN signaling. Further detailed analysis revealed that the ATG4B protein targeted and upregulated the TRAF3 protein to induce IFN expression via the TRAF3-pTBK1-pIRF3 pathway. The above data revealed a novel mechanism underlying the ATG4B-mediated viral restriction, thereby providing novel possibilities for preventing and controlling PEDV.
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- 2022
20. FUBP3 Degrades the Porcine Epidemic Diarrhea Virus Nucleocapsid Protein and Induces the Production of Type I Interferon
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Sujie Dong, Ning Kong, Chunmei Wang, Youwen Li, Dage Sun, Wenzhen Qin, Huanjie Zhai, Xueying Zhai, Xinyu Yang, Chenqian Ye, Manqing Ye, Changlong Liu, Lingxue Yu, Hao Zheng, Wu Tong, Hai Yu, Wen Zhang, Guangzhi Tong, and Tongling Shan
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TNF Receptor-Associated Factor 3 ,Swine ,Porcine epidemic diarrhea virus ,Ubiquitin-Protein Ligases ,Immunology ,Nucleocapsid Proteins ,Microbiology ,Antiviral Agents ,Cell Line ,Virology ,Insect Science ,Chlorocebus aethiops ,Interferon Type I ,Animals ,Coronavirus Infections ,Vero Cells ,Transcription Factors - Abstract
Porcine epidemic diarrhea virus (PEDV) is the globally distributed alphacoronavirus that can cause lethal watery diarrhea in piglets, causing substantial economic damage. However, the current commercial vaccines cannot effectively the existing diseases. Thus, it is of great necessity to identify the host antiviral factors and the mechanism by which the host immune system responds against PEDV infection required to be explored. The current work demonstrated that the host protein, the far upstream element-binding protein 3 (FUBP3), could be controlled by the transcription factor TCFL5, which could suppress PEDV replication through targeting and degrading the nucleocapsid (N) protein of the virus based on selective autophagy. For the ubiquitination of the N protein, FUBP3 was found to recruit the E3 ubiquitin ligase MARCH8/MARCHF8, which was then identified, transported to, and degraded in autolysosomes via NDP52/CALCOCO2 (cargo receptors), resulting in impaired viral proliferation. Additionally, FUBP3 was found to positively regulate type-I interferon (IFN-I) signaling and activate the IFN-I signaling pathway by interacting and increasing the expression of tumor necrosis factor (TNF) receptor-associated factor 3 (TRAF3). Collectively, this study showed a novel mechanism of FUBP3-mediated virus restriction, where FUBP3 was found to degrade the viral N protein and induce IFN-I production, aiming to hinder the replication of PEDV.
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- 2022
21. TARDBP Inhibits Porcine Epidemic Diarrhea Virus Replication through Degrading Viral Nucleocapsid Protein and Activating Type I Interferon Signaling
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Sujie Dong, Ning Kong, Yu Zhang, Youwen Li, Dage Sun, Wenzhen Qin, Huanjie Zhai, Xueying Zhai, Xinyu Yang, Chenqian Ye, Manqing Ye, Changlong Liu, Lingxue Yu, Hao Zheng, Wu Tong, Hai Yu, Wen Zhang, Guangzhi Tong, and Tongling Shan
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TNF Receptor-Associated Factor 3 ,Swine ,Porcine epidemic diarrhea virus ,Immunology ,Nucleocapsid Proteins ,Virus Replication ,Microbiology ,Immunity, Innate ,Virus-Cell Interactions ,DNA-Binding Proteins ,Virology ,Insect Science ,Interferon Type I ,Myeloid Differentiation Factor 88 ,Animals ,RNA ,Interferon Regulatory Factor-3 ,Coronavirus Infections ,Signal Transduction - Abstract
In global infection and serious morbidity and mortality, porcine epidemic diarrhea virus (PEDV) has been regarded as a dreadful porcine pathogen, but the existing commercial vaccines are not enough to fully protect against the epidemic strains. Therefore, it is of great necessity to feature the PEDV-host interaction and develop efficient countermeasures against viral infection. As an RNA/DNA protein, the trans-active response DNA binding protein (TARDBP) plays a variety of functions in generating and processing RNA, including transcription, splicing, transport, and mRNA stability, which have been reported to regulate viral replication. The current work aimed to detect whether and how TARDBP influences PEDV replication. Our data demonstrated that PEDV replication was significantly suppressed by TARDBP, regulated by KLF16, which targeted its promoter. We observed that through the proteasomal and autophagic degradation pathway, TARDBP inhibited PEDV replication via the binding as well as degradation of PEDV-encoded nucleocapsid (N) protein. Moreover, we found that TARDBP promoted autophagic degradation of N protein via interacting with MARCHF8, an E3 ubiquitin ligase, as well as NDP52, a cargo receptor. We also showed that TARDBP promoted host antiviral innate immune response by inducing interferon (IFN) expression through the MyD88-TRAF3-IRF3 pathway during PEDV infection. In conclusion, these data revealed a new antiviral role of TARDBP, effectively suppressing PEDV replication through degrading virus N protein via the proteasomal and autophagic degradation pathway and activating type I IFN signaling via upregulating the expression of MyD88. IMPORTANCE PEDV refers to the highly contagious enteric coronavirus that has quickly spread globally and generated substantial financial damage to the global swine industry. During virus infection, the host regulates the innate immunity and autophagy process to inhibit virus infection. However, the virus has evolved plenty of strategies with the purpose of limiting IFN-I production and autophagy processes. Here, we identified that TARDBP expression was downregulated via the transcription factor KLF16 during PEDV infection. TARDBP could inhibit PEDV replication through the combination as well as degradation of PEDV-encoded nucleocapsid (N) protein via proteasomal and autophagic degradation pathways and promoted host antiviral innate immune response by inducing IFN expression through the MyD88-TRAF3-IRF3 pathway. In sum, our data identify a novel antiviral function of TARDBP and provide a better grasp of the innate immune response and protein degradation pathway against PEDV infection.
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- 2022
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22. Immune duration of a recombinant PRRSV vaccine expressing E2 of CSFV
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Liwei Li, Hao Zheng, Kuan Zhao, Lingxue Yu, Haojie Zhu, Yanjun Zhou, Guoxin Li, Fei Gao, Yujiao Zhang, Wu Tong, Yifeng Jiang, and Guangzhi Tong
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Swine ,viruses ,animal diseases ,030231 tropical medicine ,Porcine Reproductive and Respiratory Syndrome ,Antibodies, Viral ,Virus ,Classical Swine Fever ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Immunity ,Animals ,Porcine respiratory and reproductive syndrome virus ,030212 general & internal medicine ,General Veterinary ,General Immunology and Microbiology ,biology ,Public Health, Environmental and Occupational Health ,Viral Vaccines ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,Virology ,Infectious Diseases ,Immunization ,Classical Swine Fever Virus ,Classical swine fever ,biology.protein ,Molecular Medicine ,Antibody ,Viral load - Abstract
Classical swine fever virus (CSFV) and Porcine reproductive and respiratory syndrome virus (PRRSV) are both important pathogens which seriously harm the economic swine industry worldwide. We have previously demonstrated that rPRRSV-E2 is a promising live, virus-vectored vaccine that provides 100% protection against highly pathogenic PRRSV (HP-PRRSV) and CSFV. Here, we evaluated the duration of immunity (DOI) of the vaccine strain, rPRRSV-E2. Vaccine or cell culture medium was administered to piglets at 4 weeks of age. All immunized piglets developed high levels of antibodies, which could maintain for up to 23 weeks, against PRRSV and CSFV. All immunized pigs were well protected from the challenge of HP-PRRSV or CSFV at 20 weeks and 24 weeks post vaccination. The vaccine protection rate was still 100% at 24 weeks after immunization. The immune efficacy results showed that the immune duration of rPRRSV-E2 could be up to 5 months.
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- 2020
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23. Long-Term Expansion of Porcine Intestinal Organoids Serves as an in vitro Model for Swine Enteric Coronavirus Infection
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Min Zhang, Lilei Lv, Hongming Cai, Yanhua Li, Fei Gao, Lingxue Yu, Yifeng Jiang, Wu Tong, Liwei Li, Guoxin Li, Guangzhi Tong, and Changlong Liu
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Microbiology (medical) ,Microbiology - Abstract
A reliable and reproducible model in vitro for swine enteric coronaviruses infection would be intestinal models that support virus replication and can be long-term cultured and manipulated experimentally. Here, we designed a robust long-term culture system for porcine intestinal organoids from the intestinal crypt or single LGR5+ stem cell by combining previously defined insights into the growth requirements of the intestinal epithelium of humans. We showed that long-term cultured swine intestinal organoids were expanded in vitro for more than 6 months and maintained the potential to differentiate into different types of cells. These organoids were successfully infected with porcine enteric coronavirus, including porcine epidemic diarrhea virus (PEDV) and transmissible gastroenteritis virus (TGEV), and were capable of supporting virus replication and progeny release. RNA-seq analysis showed robust induction of transcripts associated with antiviral signaling in response to enteric coronavirus infection, including hundreds of interferon-stimulated genes and cytokines. Moreover, gene set enrichment analysis indicated that PEDV infection could suppress the immune response in organoids. This 3D intestinal organoid model offers a long-term, renewable resource for investigating porcine intestinal infections with various pathogens.
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- 2022
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24. Long-Term Expansion of Porcine Intestinal Organoids Serves as an
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Min, Zhang, Lilei, Lv, Hongming, Cai, Yanhua, Li, Fei, Gao, Lingxue, Yu, Yifeng, Jiang, Wu, Tong, Liwei, Li, Guoxin, Li, Guangzhi, Tong, and Changlong, Liu
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A reliable and reproducible model
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- 2022
25. Identification of Virulence Associated Region during Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus during Attenuation In Vitro: Complex Question with Different Strain Backgrounds
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Yifeng Jiang, Wu Tong, Lingxue Yu, Liwei Li, Fei Gao, Guoxin Li, Changlong Liu, Pengfei Chen, Qi Shen, Yujiao Zhang, Yanjun Zhou, and Guangzhi Tong
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reverse genetics system ,DNA, Complementary ,Swine ,animal diseases ,viruses ,Porcine Reproductive and Respiratory Syndrome ,Vaccines, Attenuated ,Virus Replication ,Microbiology ,Article ,Cell Line ,Virology ,Animals ,Porcine respiratory and reproductive syndrome virus ,Virulence ,virulence change ,Vaccination ,virus diseases ,PRRSV ,Viral Vaccines ,respiratory system ,QR1-502 ,Infectious Diseases ,Cytokines ,Sequence Analysis - Abstract
Highly pathogenic porcine reproductive and respiratory syndrome virus PRRSV (HP-PRRSV) was one of the most devastating diseases of the pig industry, among various strategies, vaccination was one of the most useful tools for PRRS control. Attenuated live vaccine was used worldwide, however, the genetic basis of HP-PRRSV virulence change during attenuation remain to be determined. Here, to identify virulence associated regions of HP-PRRSV during attenuation in vitro, six full-length infectious cDNA clones with interchanges of 5′UTR + ORF1a, ORF1b, and ORF2-7 + 3′UTR regions between HP-PRRSV strain HuN4-F5 and its attenuated vaccine strain HuN4-F112 were generated, and chimeric viruses were rescued. Piglets were inoculated with chimeric viruses and their parental viruses, and rectal temperature were recorded daily, and serum were collected for future experiments. Our results showed that ORF1a played an important role on virus replication, cytokine response and lung damage, the exchange of ORF1b and ORF2-7 in different backbone led to different exhibition on virus replication in vivo/vitro and cytokine response. Among 9 PRRSV attenuated series, consistent amino acid changes during PRRSV attenuation were found in NSP4, NSP9, GP2, E, GP3 and GP4. Our study provides a fundamental data for the investigation of PRRSV attenuation, the different results of the virulence change among different studies indicated that different mechanisms might be used during PRRSV virulence enhancement in vivo and attenuation in vitro.
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- 2021
26. An Integrated CNN Model for Reconstructing and Predicting Land Use/Cover Change: A Case Study of the Baicheng Area, Northeast China
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Liping Chang, Shuwen Zhang, Jing Wang, Lingxue Yu, Jiuchun Yang, Yubo Zhang, Dongyan Wang, and Fengqin Yan
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land use and land cover change ,machine learning algorithms ,convolutional neural networks ,deep learning ,Land use ,business.industry ,Computer science ,Science ,Deep learning ,Land management ,Context (language use) ,Land cover ,computer.software_genre ,Convolutional neural network ,Field (geography) ,General Earth and Planetary Sciences ,Data mining ,Artificial intelligence ,business ,computer ,Predictive modelling - Abstract
Land use and land cover change (LUCC) modeling has continuously been a major research theme in the field of land system science, which interprets the causes and consequences of land use dynamics. In particular, models that can obtain long-term land use data with high precision are of great value in research on global environmental change and climate impact, as land use data are important model input parameters for evaluating the effect of human activity on nature. However, the accuracy of existing reconstruction and prediction models is inadequate. In this context, this study proposes an integrated convolutional neural network (CNN) LUCC reconstruction and prediction model (CLRPM), which meets the demand for fine-scale LUCC reconstruction and prediction. This model applies the deep learning method, which far exceeds the performance of traditional machine learning methods, and uses CNN to extract spatial features and provide greater proximity information. Taking Baicheng city in Northeast China as an example, we verify that CLRPM achieved high-precision annual LUCC reconstruction and prediction, with an overall accuracy rate 9.38% higher than that of the existing models. Additionally, the error rate was reduced by 49.5%. Moreover, this model can perform multilevel LUCC classification category reconstructions and predictions. This study casts light on LUCC models within the high-precision and fine-grained LUCC categories, which will aid LUCC analyses and help decision-makers better understand complex land-use systems and develop better land management strategies.
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- 2021
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27. Recombinant Bivalent Live Vectored Vaccine Against Classical Swine Fever and HP-PRRS Revealed Adequate Heterogeneous Protection Against NADC30-Like Strain
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Liwei Li, Jinxia Chen, Zhengda Cao, Yunlei Cao, Ziqiang Guo, Wu Tong, Yanjun Zhou, Guoxin Li, Yifeng Jiang, Changlong Liu, Lingxue Yu, Sina Qiao, Jiachen Liu, Guangzhi Tong, and Fei Gao
- Subjects
Microbiology (medical) ,rPRRSV-E2 ,live vectored vaccine ,NADC30-like strain ,challenge model ,heterologous protection ,Microbiology ,QR1-502 ,Original Research - Abstract
The recombinant bivalent live vectored vaccine rPRRSV-E2 has been proved to be a favorable genetic engineering vaccine against classical swine fever (CSF) and highly pathogenic porcine reproductive and respiratory syndrome (HP-PRRS). NADC30-like strains have recently emerged in China and caused severe disease, and it is necessary to evaluate the vaccine candidate for the currently circulating viruses. This study established a good challenge model to evaluate the candidate rPRRSV-E2 vaccine in preventing infection with a representative NADC30-like strain (ZJqz21). It was shown that the challenge control piglets displayed clinical signs typical of PRRSV, including a persistent fever, dyspnea, moderate interstitial pneumonia, lymph node congestion, and viremia. In contrast, the rPRRSV-E2 vaccination significantly alleviated the clinical signs, yielded a high level of antibodies, provided adequate protection against challenge with ZJqz21, and inhibited viral shedding and the viral load in target tissues. Our results demonstrated that the recombinant bivalent live vectored vaccine strain rPRRSV-E2 can provide efficient protection against the challenge of heterologous circulating NADC30-like strain and could be a promising vaccine candidate for the swine industry.
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- 2021
28. Biophysical Effects of Temperate Forests in Regulating Regional Temperature and Precipitation Pattern across Northeast China
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Guangshuai Li, Yue Jiao, Hengqing Zhang, Tingxiang Liu, Jiuchun Yang, Lingxue Yu, Lidu Shen, Shuwen Zhang, and Kun Bu
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Moisture ,Northeast China ,business.industry ,Science ,forest ecosystem ,regional temperature and precipitation regulation ,Atmosphere ,WRF regional climate model ,Agriculture ,Evapotranspiration ,Forest ecology ,General Earth and Planetary Sciences ,Environmental science ,Climate model ,Precipitation ,Physical geography ,business ,Temperate rainforest - Abstract
The temperate forests in Northeast China are an important ecological barrier. However, the way in which temperate forests regulate the regional temperature and water cycling remains unclear. In this study, we quantitatively evaluated the role that temperate forests play in the regulation of the regional temperature and precipitation by combining remote sensing observations with a state-of-the-art regional climate model. Our results indicated that the forest ecosystem could slightly warm the annual air temperature by 0.04 ± 0.02 °C and bring more rainfall (17.49 ± 3.88 mm) over Northeast China. The temperature and precipitation modification function of forests varies across the seasons. If the trees were not there, our model suggests that the temperature across Northeast China would become much colder in the winter and spring, and much hotter in the summer than the observed climate. Interestingly, the temperature regulation from the forest ecosystem was detected in both forested regions and the adjacent agricultural areas, suggesting that the temperate forests in Northeast China cushion the air temperature by increasing the temperature in the winter and spring, and decreasing the temperature in the summer over the whole region. Our study also highlights the capacity of temperate forests to regulate regional water cycling in Northeast China. With high evapotranspiration, the forests could transfer sufficient moisture to the atmosphere. Combined with the associated moisture convergence, the temperate forests in Northeast China brought more rainfall in both forest and agricultural ecosystems. The increased rainfall was mainly concentrated in the spring and summer; these seasons accounted for 93.82% of the total increase in rainfall. These results imply that temperate forests make outstanding contributions to the maintainance of the sustainable development of agriculture in Northeast China.
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- 2021
29. PABPC4 Broadly Inhibits Coronavirus Replication by Degrading Nucleocapsid Protein through Selective Autophagy
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Dage Sun, Ling Zhao, Ning Kong, Wu Tong, Baokun Sui, Guangzhi Tong, Xiaoyong Chen, Sujie Dong, Lingxue Yu, Huan Wang, Yajuan Jiao, Hai Yu, Ying Liao, Yaowei Huang, Wen Zhang, Hao Zheng, Tongling Shan, and Hua Wang
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Swine ,Physiology ,viruses ,Virus Replication ,medicine.disease_cause ,Alphacoronavirus ,N protein ,Interferon ,Chlorocebus aethiops ,PABPC4 ,Coronaviridae ,Coronavirus ,Ecology ,biology ,Nuclear Proteins ,Blood Proteins ,QR1-502 ,Ubiquitin ligase ,Infectious Diseases ,Research Article ,medicine.drug ,Microbiology (medical) ,Sp1 Transcription Factor ,Ubiquitin-Protein Ligases ,coronaviruses ,Infectious bronchitis virus ,Poly(A)-Binding Proteins ,Microbiology ,Cell Line ,Autophagy ,Genetics ,medicine ,Animals ,Coronavirus Nucleocapsid Proteins ,Humans ,Vero Cells ,selective autophagy ,Murine hepatitis virus ,Sp1 transcription factor ,General Immunology and Microbiology ,Porcine epidemic diarrhea virus ,Ubiquitination ,Cell Biology ,biology.organism_classification ,Virology ,SP1 ,HEK293 Cells ,Viral replication ,Proteolysis ,biology.protein ,Betacoronavirus - Abstract
Emerging coronaviruses (CoVs) can cause severe diseases in humans and animals, and, as of yet, none of the currently available broad-spectrum drugs or vaccines can effectively control these diseases. Host antiviral proteins play an important role in inhibiting viral proliferation. One of the isoforms of cytoplasmic poly(A)-binding protein (PABP), PABPC4, is an RNA-processing protein, which plays an important role in promoting gene expression by enhancing translation and mRNA stability. However, its function in viruses remains poorly understood. Here, we report that the host protein, PABPC4, could be regulated by transcription factor SP1 and broadly inhibits the replication of CoVs, covering four genera (Alphacoronavirus, Betacoronavirus, Gammacoronavirus, and Deltacoronavirus) of the Coronaviridae family by targeting the nucleocapsid (N) protein through the autophagosomes for degradation. PABPC4 recruited the E3 ubiquitin ligase MARCH8/MARCHF8 to the N protein for ubiquitination. Ubiquitinated N protein was recognized by the cargo receptor NDP52/CALCOCO2, which delivered it to the autolysosomes for degradation, resulting in impaired viral proliferation. In addition to regulating gene expression, these data demonstrate a novel antiviral function of PABPC4, which broadly suppresses CoVs by degrading the N protein via the selective autophagy pathway. This study will shed light on the development of broad anticoronaviral therapies. IMPORTANCE Emerging coronaviruses (CoVs) can cause severe diseases in humans and animals, but none of the currently available drugs or vaccines can effectively control these diseases. During viral infection, the host will activate the interferon (IFN) signaling pathways and host restriction factors in maintaining the innate antiviral responses and suppressing viral replication. This study demonstrated that the host protein, PABPC4, interacts with the nucleocapsid (N) proteins from eight CoVs covering four genera (Alphacoronavirus, Betacoronavirus, Gammacoronavirus, and Deltacoronavirus) of the Coronaviridae family. PABPC4 could be regulated by SP1 and broadly inhibits the replication of CoVs by targeting the nucleocapsid (N) protein through the autophagosomes for degradation. This study significantly increases our understanding of the novel host restriction factor PABPC4 against CoV replication and will help develop novel antiviral strategies.
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- 2021
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30. Identification and Characterization of Cell Lines HepG2, Hep3B217 and SNU387 as Models for Porcine Epidemic Diarrhea Coronavirus Infection
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Lilei Lv, Huaye Luo, Lingxue Yu, Wu Tong, Yifeng Jiang, Guoxin Li, Guangzhi Tong, Yanhua Li, and Changlong Liu
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Diarrhea ,Swine Diseases ,Swine ,Porcine epidemic diarrhea virus ,Immunity, Innate ,Cell Line ,Dysentery ,Infectious Diseases ,Virology ,Chlorocebus aethiops ,Animals ,Humans ,Cytokines ,Interferons ,Coronavirus Infections ,Vero Cells ,porcine epidemic diarrhea coronavirus ,liver cell line ,susceptibility ,innate immune response - Abstract
Porcine epidemic diarrhea virus (PEDV), a member of the genera alphacoronavirus, causes acute watery diarrhea and dehydration in suckling piglets and results in enormous economic losses in the swine industry worldwide. Identification and characterization of different cell lines are not only invaluable for PEDV entry and replication studies but also important for the development of various types of biological pharmaceuticals against PEDV. In this study, we present an approach to identify suitable permissive cell lines for PEDV research. Human cell lines were screened for a high correlation coefficient with the established PEDV infection model Huh7 based on RNA-seq data from the Cancer Cell Line Encyclopedia (CCLE). Experimentally testing permissiveness towards PEDV infection, three highly permissive human cell lines, HepG2, Hep3B217, and SNU387 were identified. The replication kinetics of PEDV in HepG2, Hep3B217, and SNU387 cells were similar to that in Vero and Huh7 cells. Additionally, the transcriptomes analysis showed robust induction of transcripts associated with the innate immune in response to PEDV infection in all three cell lines, including hundreds of inflammatory cytokine and interferon genes. Moreover, the expression of inflammatory cytokines and interferons were confirmed by qPCR assay. Our findings indicate that HepG2, Hep3B217, and SNU387 are suitable cell lines for PEDV replication and innate immune response studies.
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- 2022
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31. Soil temperature mitigation due to vegetation biophysical feedbacks
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Lingxue Yu, Ye Liu, Kun Bu, Wen J. Wang, and Shuwen Zhang
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Global and Planetary Change ,Oceanography - Published
- 2022
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32. Asymmetric daytime and nighttime surface temperature feedback induced by crop greening across Northeast China
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Lingxue Yu, Ye Liu, Jiuchun Yang, Tingxiang Liu, Kun Bu, Guangshuai Li, Yue Jiao, and Shuwen Zhang
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Atmospheric Science ,Global and Planetary Change ,Forestry ,Agronomy and Crop Science - Published
- 2022
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33. Coupling localized Noah-MP-Crop model with the WRF model improved dynamic crop growth simulation across Northeast China
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Lingxue Yu, Ye Liu, Tingxiang Liu, Entao Yu, Kun Bu, Qingyu Jia, Lidu Shen, Xingming Zheng, and Shuwen Zhang
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Forestry ,Horticulture ,Agronomy and Crop Science ,Computer Science Applications - Published
- 2022
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34. EGR1 Suppresses Porcine Epidemic Diarrhea Virus Replication by Regulating IRAV To Degrade Viral Nucleocapsid Protein
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Lingxue Yu, Hai Yu, Yajuan Jiao, Xiaoyong Chen, Guangzhi Tong, Ning Kong, Hao Zheng, Wen Zhang, Tongling Shan, Hua Wang, Wu Tong, Sujie Dong, and Dage Sun
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Swine ,Ubiquitin-Protein Ligases ,Immunology ,Protein degradation ,Virus Replication ,Antiviral Agents ,Microbiology ,Virus ,Interferon ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Nucleocapsid ,Vero Cells ,Early Growth Response Protein 1 ,Swine Diseases ,biology ,Porcine epidemic diarrhea virus ,Viral nucleocapsid ,RNA-Binding Proteins ,Nucleocapsid Proteins ,biology.organism_classification ,Immunity, Innate ,Protein ubiquitination ,Virus-Cell Interactions ,Ubiquitin ligase ,HEK293 Cells ,Viral replication ,Insect Science ,Host-Pathogen Interactions ,Interferon Type I ,biology.protein ,Coronavirus Infections ,medicine.drug - Abstract
Porcine epidemic diarrhea virus (PEDV) is a globally distributed alphacoronavirus that has reemerged lately, resulting in large economic losses. During viral infection, type I interferon (IFN-I) plays a vital role in the antiviral innate immunity. However, PEDV has evolved strategies to limit IFN-I production. To suppress virus replication, the host must activate IFN-stimulated genes and some host restriction factors to circumvent viral replication. This study observed that PEDV infection induced early growth response gene 1 (EGR1) expression in PEDV-permissive cells. EGR1 overexpression remarkably suppressed PEDV replication. In contrast, depletion of EGR1 led to a significant increase in viral replication. EGR1 suppressed PEDV replication by directly binding to the IFN-regulated antiviral (IRAV) promoter and upregulating IRAV expression. A detailed analysis revealed that IRAV interacts and colocalizes with the PEDV nucleocapsid (N) protein, inducing N protein degradation via the E3 ubiquitin ligase MARCH8 to catalyze N protein ubiquitination. Knockdown of endogenous MARCH8 significantly reversed IRAV-mediated N protein degradation. The collective findings demonstrate a new mechanism of EGR1-mediated viral restriction, in which EGR1 upregulates the expression of IRAV to degrade PEDV N protein through MARCH8. IMPORTANCE PEDV is a highly contagious enteric coronavirus that has rapidly emerged worldwide and has caused severe economic losses. No currently available drugs or vaccines can effectively control PEDV. PEDV has evolved many strategies to limit IFN-I production. We identified EGR1 as a novel host restriction factor and demonstrated that EGR1 suppresses PEDV replication by directly binding to the IRAV promoter and upregulating the expression of IRAV, which interacts with and degrades the PEDV N protein via the E3 ubiquitin ligase MARCH8 to catalyze nucleocapsid protein ubiquitination, which adds another layer of complexity to the innate antiviral immunity of this newly identified restriction factor. A better understanding of the innate immune response to PEDV infection will aid the development of novel therapeutic targets and more effective vaccines against virus infection.
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- 2021
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35. Thermal and moisture response to land surface changes across different ecosystems over Heilong-Amur River Basin
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Yue Jiao, Fengqin Yan, Guangshuai Li, Shizhuo Liu, Jiuchun Yang, Shuwen Zhang, Tingxiang Liu, Kun Bu, and Lingxue Yu
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geography ,China ,Environmental Engineering ,geography.geographical_feature_category ,Farms ,Climate ,Climate Change ,Drainage basin ,Climate Models ,Vegetation ,Forests ,Pollution ,Latitude ,Greening ,Rivers ,Evapotranspiration ,Environmental Chemistry ,Environmental science ,Ecosystem ,Climate model ,Physical geography ,Waste Management and Disposal ,Restoration ecology ,Environmental Restoration and Remediation - Abstract
The Heilong-Amur River Basin (HARB) in Northeast Asia has experienced distinct land surface changes during the past 40 years due to extensive ecological restoration programs, agricultural management, and grassland grazing in different ecosystems. However, the regional climate impact caused by the long-term spatially heterogeneous land surface changes in this mid-high latitude region is not well documented. Therefore, this study used multi-source satellite measurements records and a high-resolution land-atmosphere coupled regional climate model (WRF) to investigate the land surface changes and their associated thermal and moisture impacts across three main ecosystems over the Heilong-Amur River basin from 1982 to 2018. Firstly, satellite observations indicated an overall greening in HARB, with variations across ecosystems. The significant summer farmland greening is the most representative, with the farmland green vegetation fraction (GVF) remarkably increasing by 7.78% in summer. The forest greening magnitude is stronger in spring (3.42%) than in summer (2.85%), while the grassland vegetation showed some local browning signals in summer. Secondly, our simulated results showed the summer farmland greening accelerated evapotranspiration (ET) by 0.161 mm/d and significantly cools the surface temperature by 0.508 °C averaged at the ecosystem scale, which was highly correlated with the satellite observations but with lower cooling magnitude. The forest greening brought less surface cooling in spring than summer due to the stronger albedo feedback, despite with greater increase in GVF and ET. While with the opposite process, the local grassland browning leads to consistent warming effects, which can be detected from both satellite observations and our simulation results. Finally, our results also found that rainfall increasing averagely at the ecosystem scale can't fully compensate the water emission from enhanced ET due to the surface greening, contributing to soil moisture decline in both farmland and relative dry forests.
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- 2021
36. Restriction of porcine reproductive and respiratory syndrome virus replication by galectin-1
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Lingxue Yu, Hao Zheng, Fei Gao, Wu Tong, Tongling Shan, Liwei Li, Zhiyong Ma, Guoxin Li, Guangzhi Tong, Kuan Zhao, and Yifeng Jiang
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Galectin 1 ,Swine ,animal diseases ,viruses ,Porcine Reproductive and Respiratory Syndrome ,Gene Expression ,Pseudorabies ,Viral Nonstructural Proteins ,Virus Replication ,Antiviral Agents ,Microbiology ,Virus ,Cell Line ,03 medical and health sciences ,Endoribonucleases ,Macrophages, Alveolar ,medicine ,Animals ,Porcine respiratory and reproductive syndrome virus ,030304 developmental biology ,0303 health sciences ,Innate immune system ,General Veterinary ,biology ,030306 microbiology ,virus diseases ,General Medicine ,Nucleocapsid Proteins ,Japanese encephalitis ,medicine.disease ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,Virology ,Titer ,Classical swine fever ,Gene Knockdown Techniques ,Porcine epidemic diarrhea virus ,Protein Binding - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) causes great economic losses to the swine industry globally; however, effective control measures for this virus are limited. Here, we screened a porcine alveolar macrophage (PAM) cDNA library with a yeast two-hybrid system to reveal that galectin-1 (Gal-1), an endogenous innate immune protein encoded by LGALS1, interacts with nonstructural protein 11 (Nsp11) of PRRSV. Western blotting and viral titer assays indicated that Gal-1 overexpression suppressed replication in multiple PRRSV strains (P < 0.001), whereas Gal-1 knockdown or knockout increased viral titer and nucleocapsid protein expression. The Gal-1-specific anti-PRRSV effect was associated with the endoribonuclease domain of Nsp11 through inactivation of interferon-antagonist function and stimulation of interferon-stimulated gene expression. Additionally, Gal-1 interacted with PRRSV E protein but not with PRRSV glycoproteins, and recombinant Gal-1 treatment inhibited PRRSV in PAMs and MARC-145 cells. Furthermore, Gal-1 inhibited replication in multiple viruses, including equine arteritis virus, porcine epidemic diarrhea virus, pseudorabies virus, Japanese encephalitis virus, and classical swine fever virus, suggesting its potential broad application for antiviral strategies. Our findings provide insight into the important role of Gal-1 in PRRSV pathogenesis and its potential use as a novel therapeutic target against PRRSV infection.
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- 2019
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37. Nucleocapsid protein of porcine reproductive and respiratory syndrome virus antagonizes the antiviral activity of TRIM25 by interfering with TRIM25-mediated RIG-I ubiquitination
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Lingxue Yu, Liwei Li, Guoxin Li, Fei Gao, Yifeng Jiang, Yanjun Zhou, Yujiao Zhang, Kuan Zhao, Wen-Ying Zhao, and Guangzhi Tong
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TRIM25 ,Swine ,viruses ,animal diseases ,Amino Acid Motifs ,chemical and pharmacologic phenomena ,Transfection ,Virus Replication ,Microbiology ,Article ,Virus ,Cell Line ,RIG-I ,Tripartite Motif Proteins ,03 medical and health sciences ,Ubiquitin ,Interferon β ,Chlorocebus aethiops ,Animals ,Humans ,Porcine respiratory and reproductive syndrome virus ,RNA, Small Interfering ,Respiratory system ,030304 developmental biology ,0303 health sciences ,Innate immune system ,General Veterinary ,biology ,030306 microbiology ,Ubiquitination ,N Protein ,virus diseases ,General Medicine ,Nucleocapsid Proteins ,respiratory system ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,Virology ,Immunity, Innate ,3. Good health ,HEK293 Cells ,PRRSV ,Host-Pathogen Interactions ,biology.protein ,DEAD Box Protein 58 ,Protein Binding ,Signal Transduction - Abstract
Highlights • TRIM25, a novel host factor, inhibits replication of PRRSV. • PRRSV N protein impedes TRIM25–RIG-I interactions by competitively binding TRIM25. • PRRSV N inhibits TRIM25 expression and RIG-I ubiquitination to suppress IFN-β production. • TRIM25 diminishes the inhibitory effect of PRRSV N on RIG-I ubiquitination., Porcine reproductive and respiratory syndrome (PRRS) is caused by PRRS virus (PRRSV), and is characterized by respiratory diseases in piglet and reproductive disorders in sow. Identification of sustainable and effective measures to mitigate PRRSV transmission is a pressing problem. The nucleocapsid (N) protein of PRRSV plays a crucial role in inhibiting host innate immunity during PRRSV infection. In the current study, a new host-restricted factor, tripartite motif protein 25 (TRIM25), was identified as an inhibitor of PRRSV replication. Co-immunoprecipitation assay indicated that the PRRSV N protein interferes with TRIM25–RIG-I interactions by competitively interacting with TRIM25. Furthermore, N protein inhibits the expression of TRIM25 and TRIM25-mediated RIG-I ubiquitination to suppress interferon β production. Furthermore, with increasing TRIM25 expression, the inhibitory effect of N protein on the ubiquitination of RIG-I diminished. These results indicate for the first time that TRIM25 inhibits PRRSV replication and that the N protein antagonizes the antiviral activity by interfering with TRIM25-mediated RIG-I ubiquitination. This not only provides a theoretical basis for the development of drugs to control PRRSV replication, but also better explains the mechanism through which the PRRSV N protein inhibits innate immune responses of the host.
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- 2019
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38. Genetic evolution analysis and pathogenicity assessment of porcine epidemic diarrhea virus strains circulating in part of China during 2011–2017
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Fei Gao, Hai Yu, Yifeng Jiang, Yan-Jun Zhou, Pengfei Chen, Lingxue Yu, Yixuan J. Hou, Xianbin Li, Hui-chun Li, Zhibiao Yang, Kang Wang, Wu Tong, and Guangzhi Tong
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0301 basic medicine ,Microbiology (medical) ,China ,Genes, Viral ,Genotype ,Swine ,030106 microbiology ,Virulence ,Variation ,History, 21st Century ,Microbiology ,Article ,Cell Line ,Evolution, Molecular ,Feces ,03 medical and health sciences ,Genetic variation ,Genetics ,Animals ,Pathogenicity ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Swine Diseases ,Molecular Epidemiology ,Molecular epidemiology ,biology ,Phylogenetic tree ,Porcine epidemic diarrhea virus ,PEDV ,S gene ,Genetic Variation ,FJzz1 ,Outbreak ,Sequence Analysis, DNA ,biology.organism_classification ,Virology ,030104 developmental biology ,Infectious Diseases ,Amino Acid Substitution ,Mutation ,RNA, Viral ,Coronavirus Infections - Abstract
In recent years, the outbreaks of porcine epidemic diarrhea (PED) caused by the highly virulent porcine epidemic diarrhea virus (PEDV) variants occurred frequently in China, resulting in severe economic impacts to the pork industry. In this study, we selected and analyzed the genetic evolution of 15 PEDV representative strains that were identified in fecal samples of diarrheic piglets in 10 provinces and cities during 2011–2017. The phylogenetic analysis indicated that all the 15 PEDV isolates clustered into G2 genotype associated with the current circulating strains. Compared with the genome of the prototype strain CV777, these strains had 103–120 amino acid mutations in their S proteins, most of which were in the N terminal domain of S1 (S1-NTD). We also found 37 common mutations in all these 15 strains, although these strains shared 96.9–99.7% nucleotide homology and 96.3–99.8% amino acid homology in the S protein compared with the other original pandemic strains. Computational analysis showed that these mutations may lead to remarkable changes in the conformational structure and asparagine (N)-linked glycosylation sites of S1-NTD, which may be associated with the altered pathogenicity of these variant PEDV strains. We evaluated the pathogenicity of the PEDV strain FJzz1 in piglets through oral and intramuscular infection routes. Compared with oral infection, intramuscular infection could also cause typical clinical signs but with a slightly delayed onset, confirming that the variant PEDV isolate FJzz1 was highly pathogenic to suckling piglets. In conclusion, we analyzed the genetic variation and pathogenicity of the emerging PEDV isolates of China, indicating that G2 variant PEDV strains as the main prevalent strains that may mutate continually. This study shows the necessity of monitoring the molecular epidemiology and the etiological characteristics of the epidemic PEDV isolates, which may help better control the PED outbreaks., Highlights • G2 variant PEDV strains as the main prevalent strains continue to mutate along with time. • The isolated strains were prone to mutate in the S protein with many common amino acid mutations. • These mutations may lead to remarkable changes in the conformational structure of S1-NTD and the pathogenicity of PEDV. • Both oral and intramuscular routes caused typical clinical signs to piglets.
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- 2019
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39. Impacts of Wetland Reclamation and Paddy Field Expansion on Observed Local Temperature Trends in the Sanjiang Plain of China
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Tingxiang Liu, Shuwen Zhang, and Lingxue Yu
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Hydrology ,Geophysics ,Wetland reclamation ,Environmental science ,Paddy field ,China ,Sanjiang Plain ,Earth-Surface Processes - Published
- 2019
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40. Nuclear ribonucleoprotein RALY targets virus nucleocapsid protein and induces autophagy to restrict porcine epidemic diarrhea virus replication
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Wenzhen, Qin, Ning, Kong, Yu, Zhang, Sujie, Dong, Huanjie, Zhai, Xueying, Zhai, Xinyu, Yang, Chenqian, Ye, Manqing, Ye, Changlong, Liu, Lingxue, Yu, Hao, Zheng, Hai, Yu, Wen, Zhang, Guangzhi, Tong, Daoliang, Lan, Wu, Tong, and Tongling, Shan
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Swine Diseases ,Swine ,Porcine epidemic diarrhea virus ,Cell Biology ,Nucleocapsid Proteins ,Virus Replication ,Biochemistry ,Ribonucleoproteins ,Chlorocebus aethiops ,Autophagy ,Animals ,Coronavirus Infections ,Vero Cells ,Molecular Biology - Abstract
Porcine epidemic diarrhea virus (PEDV) causes diarrhea and dehydration in pigs and leads to great economic losses in the commercial swine industry. However, the underlying molecular mechanisms of host response to viral infection remain unclear. In the present study, we investigated a novel mechanism by which RALY, a member of the heterogeneous nuclear ribonucleoprotein family, significantly promotes the degradation of the PEDV nucleocapsid (N) protein to inhibit viral replication. Furthermore, we identified an interaction between RALY and the E3 ubiquitin ligase MARCH8 (membrane-associated RING-CH 8), as well as the cargo receptor NDP52 (nuclear dot protein 52 kDa), suggesting that RALY could suppress PEDV replication by degrading the viral N protein through a RALY-MARCH8-NDP52-autophagosome pathway. Collectively, these results suggest a preventive role of RALY against PEDV infection via the autophagy pathway and open up the possibility of inducing RALY in vivo as an effective prophylactic and preventive treatment for PEDV infection.
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- 2022
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41. The Novel PRRSV Strain HBap4-2018 with a Unique Recombinant Pattern Is Highly Pathogenic to Piglets
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Pengfei Chen, Xiongwei Zhao, Changlong Liu, Shuting Zhou, Xiangmei Tan, Wu Tong, Xia Wu, Hai Yu, Fei Gao, Lingxue Yu, Jiarong Yu, Yanjun Zhou, Mengqin Lao, Guangzhi Tong, Junrui Zhu, and Yifeng Jiang
- Subjects
medicine.medical_specialty ,China ,Lineage (genetic) ,Swine ,viruses ,animal diseases ,Immunology ,Porcine Reproductive and Respiratory Syndrome ,Viremia ,Genome, Viral ,Genome ,law.invention ,Medical microbiology ,law ,Virology ,Genetic variation ,medicine ,Animals ,Porcine respiratory and reproductive syndrome virus ,Amino Acid Sequence ,Phylogeny ,biology ,Phylogenetic tree ,virus diseases ,Genetic Variation ,respiratory system ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,medicine.disease ,Recombinant DNA ,Molecular Medicine ,Research Article - Abstract
Currently, various porcine reproductive and respiratory syndrome virus (PRRSV) variants emerged worldwide with different genetic characteristics and pathogenicity, increasing the difficulty of PRRS control. In this study, a PRRSV strain named HBap4-2018 was isolated from swine herds suffering severe respiratory disease with high morbidity in Hebei Province of China in 2018. The genome of HBap4-2018 is 15,003 nucleotides in length, and compared with NADC30-like PRRSV, nsp2 of HBap4-2018 has an additional continuous deletion of five amino acids. Phylogenetic analysis based on complete genome and ORF5 showed that HBap4-2018 belonged to lineage 8 of PRRSV-2, which was characterized by highly variable genome. However, HBap4-2018 was classified into lineage 1 based on phylogenetic analysis of nsp2, sharing higher amino acid homology (85.3%–85.5%) with NADC30-like PRRSV. Further analysis suggested that HBap4-2018 was a novel natural recombinant PRRSV with three recombinant fragments in the genome, of which highly pathogenic PRRSV (HP-PRRSV) served as the major parental strains, while NADC30-like PRRSV served as the minor parental strains. Five recombination break points were identified in nsp2, nsp3, nsp5, nsp9 and ORF6, respectively, presenting a novel recombinant pattern in the genome. Piglets inoculated with HBap4-2018 presented typical clinical signs with a mortality rate of 60%. High levels of viremia and obvious macroscopic and histopathological lesions in the lungs were observed, revealing the high pathogenicity of HBap4-2018 in piglets. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12250-021-00453-0.
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- 2021
42. Immune efficacy of a candidate porcine reproductive and respiratory syndrome vaccine rHN-NP49 administered by a Needle-free intradermal delivery system in comparison with intramuscular injection
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Guoxin Li, Hai Yu, Liwei Li, Yujiao Zhang, Fei Gao, Yan-Jun Zhou, Guangzhi Tong, Pengfei Chen, Lingxue Yu, Shuai-Yong Wang, Xianbin Li, Xiangmei Tan, Erwin van den Born, Wu Tong, Yifeng Jiang, and Kuan Zhao
- Subjects
Swine ,animal diseases ,Porcine Reproductive and Respiratory Syndrome ,Viremia ,Antibodies, Viral ,Vaccines, Attenuated ,Group A ,Injections, Intramuscular ,Immune system ,medicine ,Animals ,Porcine respiratory and reproductive syndrome virus ,Viral shedding ,General Veterinary ,General Immunology and Microbiology ,business.industry ,Vaccination ,Public Health, Environmental and Occupational Health ,Viral Vaccines ,medicine.disease ,Infectious Diseases ,Immunization ,Immunology ,Molecular Medicine ,business ,Intramuscular injection ,Viral load - Abstract
Porcine reproductive and respiratory syndrome (PRRS) is one of the major drivers of economic loss in the swine industry worldwide. In commercial pig production, vaccination is the first option in an attempt to control infectious diseases. Pigs are therefore often immunized with different vaccines, and almost all of them are delivered via the intramuscular (IM) route. However, the IM injection may result in physical damage, stress reactions, and is labor demanding. An alternative route is urgently needed to reduce the disadvantages of conventional vaccination. In this study, a needle-free intradermal (ID) delivery system was evaluated for delivering a live PRRS vaccine as compared with the traditional needle-syringe method. Fifty-two 4-week-old piglets were divided into six groups: piglets in groups A-C were immunized using ID delivery system with 104, 105 and 106 TCID50 of PRRS candidate vaccine strain rHN-NP49, respectively; piglets in group D were immunized IM with 105 TCID50 of rHN-NP49; and group E and F were used as challenge and control groups, respectively. At 28 days post vaccination, piglets in group A to E were challenged with a lethal dose of highly-pathogenic PRRSV. Similar results were found in viremia and antibody response among the ID and IM groups during the immunization stage. After challenge, similar results were found in average body weight gain, viral shedding, serum viral load, and clinical score among the immunization groups, with a higher protection ratio in the ID group compared with IM group with the same immunization dose. These results demonstrated that the ID delivery system could provide similar or even better protection compared with IM route, and could be an effective route for PRRS vaccination.
- Published
- 2021
43. Simulating Land-Use Changes and Predicting Maize Potential Yields in Northeast China for 2050
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Shuwen Zhang, Yubo Zhang, Fengqin Yan, Jiuchun Yang, Luoman Pu, Changsheng Xiong, and Lingxue Yu
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China ,Farms ,010504 meteorology & atmospheric sciences ,Northeast China ,Health, Toxicology and Mutagenesis ,Distribution (economics) ,lcsh:Medicine ,maize potential yields ,Woodland ,GAEZ model ,010501 environmental sciences ,Forests ,01 natural sciences ,Zea mays ,Grassland ,Sanjiang Plain ,Article ,Crop ,Cities ,0105 earth and related environmental sciences ,geography ,geography.geographical_feature_category ,Food security ,Land use ,business.industry ,lcsh:R ,Public Health, Environmental and Occupational Health ,CA-Markov model ,Agriculture ,food security ,land-use changes simulation ,Agronomy ,Environmental science ,Paddy field ,business - Abstract
Crop potential yields in cropland are the essential reflection of the utilization of cropland resources. The changes of the quantity, quality, and spatial distribution of cropland will directly affect the crop potential yields, so it is very crucial to simulate future cropland distribution and predict crop potential yields to ensure the future food security. In the present study, the Cellular Automata (CA)-Markov model was employed to simulate land-use changes in Northeast China during 2015&ndash, 2050. Then, the Global Agro-ecological Zones (GAEZ) model was used to predict maize potential yields in Northeast China in 2050, and the spatio-temporal changes of maize potential yields during 2015&ndash, 2050 were explored. The results were the following. (1) The woodland and grassland decreased by 5.13 million ha and 1.74 million ha respectively in Northeast China from 2015 to 2050, which were mainly converted into unused land. Most of the dryland was converted to paddy field and built-up land. (2) In 2050, the total maize potential production and average potential yield in Northeast China were 218.09 million tonnes and 6880.59 kg/ha. Thirteen prefecture-level cities had maize potential production of more than 7 million tonnes, and 11 cities had maize potential yields of more than 8000 kg/ha. (3) During 2015&ndash, 2050, the total maize potential production and average yield decreased by around 23 million tonnes and 700 kg/ha in Northeast China, respectively. (4) The maize potential production increased in 15 cities located in the plain areas over the 35 years. The potential yields increased in only nine cities, which were mainly located in the Sanjiang Plain and the southeastern regions. The results highlight the importance of coping with the future land-use changes actively, maintaining the balance of farmland occupation and compensation, improving the cropland quality, and ensuring food security in Northeast China.
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- 2021
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44. 2AB protein of Senecavirus A antagonizes selective autophagy and type I interferon production by degrading LC3 and MARCHF8
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Dage Sun, Ning Kong, Sujie Dong, Xiaoyong Chen, Wenzhen Qin, Hua Wang, Yajuan Jiao, Huanjie Zhai, Liwei Li, Fei Gao, Lingxue Yu, Hao Zheng, Wu Tong, Hai Yu, Wen Zhang, Guangzhi Tong, and Tongling Shan
- Subjects
Sirolimus ,Swine ,Interferon Type I ,Macroautophagy ,Autophagy ,Animals ,Picornaviridae ,Cell Biology ,Molecular Biology ,Research Paper - Abstract
Senecavirus A (SVA), an important emerging porcine virus, has outbreaks in different regions and countries each year, becoming a virus with global prevalence. SVA infection has been reported to induce macroautophagy/autophagy; however, the molecular mechanisms of autophagy induction and the effect of SVA on autophagy remain unknown. This study showed that SVA infection induced the autophagy process in the early stage of SVA infection, and the rapamycin-induced autophagy inhibited SVA replication by degrading virus 3 C protein. To counteract this, SVA utilized 2AB protein inhibiting the autophagy process from promoting viral replication in the late stage of SVA infection. Further study showed that SVA 2AB protein interacted with MARCHF8/MARCH8 and LC3 to degrade the latter and inhibit the autophagy process. In addition, we found that MARCHF8 was a positive regulator of type I IFN (IFN-I) signaling. During the autophagy process, the SVA 2AB protein targeted MARCHF8 and MAVS forming a large complex for degradation to deactivate IFN-I signaling. Together, our study reveals the molecular mechanisms of selective autophagy in the host against viruses and reveals potential viral strategies to evade the autophagic process and IFN-I signaling for successful pathogenesis. Abbreviations: Baf A1: bafilomycin A1; Co-IP: co-immunoprecipitation; CQ: chloroquine; DAPI: 4′,6-diamidino-2-phenylindole; hpi: hours post-infection; IFN: interferon; ISG: IFN-stimulated gene; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MARCHF8/MARCH8: membrane associated ring-CH-type finger 8; MAVS: mitochondrial antiviral signaling protein; MOI: multiplicity of infection; Rapa: rapamycin; RT: room temperature; siRNA: small interfering RNA; SVA: Senecavirus A; TCID50: 50% tissue culture infectious doses.
- Published
- 2021
- Full Text
- View/download PDF
45. Meishan neonatal piglets tend to have higher intestinal barrier function than crossbred neonatal piglets
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Shunan Wang, Li Dong, Lingxue Yu, Hongrong Wang, Tianlong Wang, and H.M. Li
- Subjects
040301 veterinary sciences ,Swine ,Tight junction proteins ,Ileum ,Mucin 2 ,digestive system ,SF1-1100 ,Antioxidants ,0403 veterinary science ,Jejunum ,Andrology ,medicine ,Animals ,Intestinal Mucosa ,Barrier function ,Goblet cells ,chemistry.chemical_classification ,Goblet cell ,biology ,Glutathione peroxidase ,digestive, oral, and skin physiology ,Meishan pig ,0402 animal and dairy science ,Infant, Newborn ,Antioxidant ability ,04 agricultural and veterinary sciences ,biology.organism_classification ,040201 dairy & animal science ,Intestine ,Animal culture ,Intestines ,medicine.anatomical_structure ,chemistry ,Duodenum ,Animal Science and Zoology - Abstract
Meishan pigs tend to have higher disease resistance than commercial breeds, although more studies are needed to confirm this difference. This study compared intestinal barrier function between Meishan and crossbred neonatal piglets to provide guidance for both the breeding and nutritional regulation of pigs. Six Meishan piglets and 6 Duroc × (Landrace × Yorkshire) crossbred neonatal piglets (all with normal birth weights) were obtained and allocated into the MEIS and CROSS groups, respectively. Intestinal morphology, goblet cell numbers, antioxidant enzyme activity, and cytokine gene and tight junction protein expression were assessed. The results showed that BW was lower in the MEIS group than in the CROSS group (P < 0.01). The relative lengths of the duodenum (P < 0.05), jejunum (P < 0.01) and ileum (P < 0.01) in the MEIS group were higher than those in the CROSS group. Compared with the CROSS group, the MEIS group exhibited shorter villus lengths in the duodenum and jejunum (P < 0.01), a shallower crypt depth in the ileum (P < 0.001) and denser and longer microvilli in the intestine. The numbers of GCs in the duodenum (P < 0.01) and jejunum (P < 0.001) and the activity levels of glutathione peroxidase (P < 0.05) in the jejunum and of catalase (P < 0.01) and superoxide dismutase (P < 0.01) in the ileum were higher in the MEIS group than in the CROSS group. Compared with the CROSS group, the MEIS group exhibited higher gene expression levels of interleukin (IL) 4 and interferon γ (IFNγ) in the jejunum (P < 0.05); IL2 (P < 0.05), IL4 (P < 0.01) and IFNγ (P < 0.001) in the ileum; and mucin 2 (P < 0.01) and occludin (P < 0.05) in the duodenum. In conclusion, Meishan neonatal piglets showed lower birth weights but higher intestinal barrier function than crossbred piglets.
- Published
- 2021
46. Modeling Potential Impacts on Regional Climate Due to Land Surface Changes across Mongolia Plateau
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Guangshuai Li, Lingxue Yu, Tingxiang Liu, Yue Jiao, and Jiaxin Yu
- Subjects
land surface changes ,remote sensing ,thermal and moisture feedback ,Weather Research and Forecasting (WRF) ,General Earth and Planetary Sciences ,Mongolia Plateau - Abstract
Although desertification has greatly increased across the Mongolian Plateau during the last decades of the 20th century, recent satellite records documented increasing vegetation growth since the 21st century in some areas of the Mongolian Plateau. Compared to the study of desertification, the opposite characteristics of land use and vegetation cover changes and their different effects on regional land–atmosphere interaction factors still lack enough attention across this vulnerable region. Using long-term time-series multi-source satellite records and regional climate model, this study investigated the climate feedback to the observed land surface changes from the 1990s to the 2010s in the Mongolia Plateau. Model simulation suggests that vegetation greening induced a local cooling effect, while the warming effect is mainly located in the vegetation degradation area. For the typical vegetation greening area in the southeast of Inner Mongolia, latent heat flux increased over 2 W/m2 along with the decrease of sensible heat flux over 2 W/m2, resulting in a total evapotranspiration increase by 0.1~0.2 mm/d and soil moisture decreased by 0.01~0.03 mm/d. For the typical vegetation degradation area in the east of Mongolia and mid-east of Inner Mongolia, the latent heat flux decreased over 2 W/m2 along with the increase of sensible heat flux over 2 W/m2 obviously, while changes in moisture cycling were spatially more associated with variations of precipitation. It means that precipitation still plays an important role in soil moisture for most areas, and some areas would be at potential risk of drought with the asynchronous increase of evapotranspiration and precipitation.
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- 2022
- Full Text
- View/download PDF
47. Development of a Monoclonal Antibody Against Porcine CD163 SRCR5 Domain Which Partially Blocks Infection of PRRSV
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Yujiao Zhang, Kuan Zhang, Hao Zheng, Changlong Liu, Yifeng Jiang, Nannan Du, Liwei Li, Guoxin Li, Lingxue Yu, Yanjun Zhou, Wu Tong, Kuan Zhao, Guangzhi Tong, and Fei Gao
- Subjects
040301 veterinary sciences ,medicine.drug_class ,viruses ,animal diseases ,Biology ,Monoclonal antibody ,Endocytosis ,Clathrin ,Epitope ,Virus ,0403 veterinary science ,03 medical and health sciences ,medicine ,SRCR5 ,Original Research ,030304 developmental biology ,chemistry.chemical_classification ,epitope ,0303 health sciences ,lcsh:Veterinary medicine ,General Veterinary ,virus diseases ,04 agricultural and veterinary sciences ,respiratory system ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,Virology ,chemistry ,monoclonal antibody ,PRRSV ,biology.protein ,lcsh:SF600-1100 ,Veterinary Science ,CD163 ,Glycoprotein - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV), which seriously endangers the world pig industry, invades host cells through receptor-mediated endocytosis involving clathrin. CD163 is an essential receptor for PRRSV during its infection of cells. The scavenger receptor cysteine-rich 5 (SRCR5) domain of the CD163 molecule is necessary for PRRSV infection, and interacts with glycoproteins GP2a and GP4 of PRRSV, allowing the virus to infect the host cells. In this study, a monoclonal antibody (mAb) against the SRCR5-6 region of porcine CD163 was developed, and the target epitope of the mAb was determined as 497TWGTVCDSDF506, which is directly adjacent to the ligand-binding pocket (LBP) domain (487-495aa) of CD163. Further study indicated that the mAb could partially block PRRSV infection of its target cells, pulmonary alveolar macrophages. The mAb developed in the study may provide a foundation of antiviral therapy for PRRSV.
- Published
- 2020
- Full Text
- View/download PDF
48. Probing the effects of dietary selenised glucose on the selenium concentration, quality, and antioxidant activity of eggs and production performances of laying hens
- Author
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Kang Wen, Lingxue Yu, Y. Xue, Daoqing Gong, M.M. Zhao, L Liu, and Tuoyu Geng
- Subjects
Antioxidant ,Layer ,medicine.medical_treatment ,Eggs ,chemistry.chemical_element ,SF1-1100 ,Antioxidants ,Selenium ,Antioxidant indexes ,Organic trace element ,medicine ,Animals ,Food science ,Superoxide radicals ,Deposition ,Haugh unit ,Ovum ,Selenium Compound ,Glutathione peroxidase activity ,Animal Feed ,Animal culture ,Diet ,Antioxidant capacity ,Glucose ,chemistry ,embryonic structures ,Dietary Supplements ,Animal Science and Zoology ,Female ,Carrier ,Chickens - Abstract
Selenised glucose (SeGlu) is a newly invented organic selenium compound being synthesised through the selenisation reaction of glucose with NaHSe. We hypothesised that glucose could be used as a carrier for the stable low-valent organoselenium to enhance the selenium concentrations of eggs. To probe the effects of SeGlu on production performances of laying hens, egg selenium concentration, egg quality, and antioxidant indexes, 360 Hy-Line Brown laying hens were randomly assigned to three treatment groups fed with a basal diet alone or the diet supplemented with 5 or 10 mg/kg of Se from SeGlu. The results showed that SeGlu treatment not only enhanced (P < 0.001) the Se concentration in albumen and yolks, glutathione peroxidase activity, and total antioxidant capacity of eggs but also increased (P = 0.032) the Haugh unit of eggs being stored for 2 weeks, while the production performances and egg qualities of fresh eggs were not affected. Moreover, SeGlu supplementation linearly (P < 0.001) increased the scavenging ability of superoxide radicals in eggs. Briefly, SeGlu can enhance the selenium deposition and antioxidant activity of eggs, thereby meeting the nutritional requirement for Se-deficient humans.
- Published
- 2020
49. Theoretical investigation of a controlled unidirectional reflectionlessness by applying external voltage in an electro-optical plasmonic waveguide system
- Author
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Chengshou An, Ying Qiao Zhang, Lingxue Yu, Xing Ri Jin, Hang Yang, and Ying Ming Liu
- Subjects
Coupling ,Physics ,Computer simulation ,Terahertz radiation ,business.industry ,Surface plasmon ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Coupled mode theory ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,010309 optics ,Resonator ,Optics ,0103 physical sciences ,0210 nano-technology ,business ,Absorption (electromagnetic radiation) ,Voltage - Abstract
We theoretically investigate an controlled unidirectional reflectionlessness and near perfect absorption by applying external voltage in an electro-optical plasmonic waveguide system based on near-field coupling between two resonators. The system consists of two resonators side coupled to a metal-dielectric-metal plasmonic waveguide. Based on the numerical simulation, when external voltage is U = 7.4 V, the reflections for forward and backward directions are close to 0 and 0.82 at frequency 144.18 THz, while the reflections for forward and backward directions are close to 0.81 and 0 at frequency 150.86 THz when external voltage is U = 1.5 V. And the high absorption for forward (backward) direction is ∼0.97 (∼0.99) at frequency 144.18 THz (150.86 THz).
- Published
- 2020
50. Porcine Reproductive and Respiratory Syndrome Virus Antagonizes PCSK9’s Antiviral Effect via Nsp11 Endoribonuclease Activity
- Author
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Kuan Zhao, Shan Jiang, Changlong Liu, Yujiao Zhang, Fei Gao, Liwei Li, Guangzhi Tong, Yifeng Jiang, Lingxue Yu, and Yanjun Zhou
- Subjects
0301 basic medicine ,Swine ,endoribonuclease activity ,Endoribonuclease activity ,viruses ,animal diseases ,lcsh:QR1-502 ,Viral Nonstructural Proteins ,Virus Replication ,lcsh:Microbiology ,PCSK9 ,Swine Diseases ,biology ,Virus receptor ,PCSK9 Inhibitors ,virus diseases ,Haplorhini ,respiratory system ,porcine reproductive and respiratory syndrome virus ,Infectious Diseases ,medicine.anatomical_structure ,lysosome ,Kexin ,Receptors, Virus ,030106 microbiology ,Porcine Reproductive and Respiratory Syndrome ,Antigens, Differentiation, Myelomonocytic ,Receptors, Cell Surface ,Article ,Cell Line ,03 medical and health sciences ,Antigens, CD ,Virology ,Lysosome ,Endoribonucleases ,Macrophages, Alveolar ,medicine ,Animals ,Humans ,Porcine respiratory and reproductive syndrome virus ,Gene ,Proprotein convertase ,Porcine reproductive and respiratory syndrome virus ,biology.organism_classification ,nsp11 ,030104 developmental biology ,HEK293 Cells ,CD163 ,Lysosomes ,HeLa Cells - Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) is one of the most important pathogens in the swine industry worldwide. Our previous study had indicated that proprotein convertase subtilisin/kexin type 9 (PCSK9) was a responsive gene in porcine alveolar macrophages (PAMs) upon PRRSV infection. However, whether PCSK9 impacts the PRRSV replication and how the PRRSV modulates host PCSK9 remains elusive. Here, we demonstrated that PCSK9 protein suppressed the replication of both type-1 and type-2 PRRSV species. More specifically, the C-terminal domain of PCSK9 was responsible for the antiviral activity. Besides, we showed that PCSK9 inhibited PRRSV replication by targeting the virus receptor CD163 for degradation through the lysosome. In turn, PRRSV could down-regulate the expression of PCSK9 in both PAMs and MARC-145 cells. By screening the nonstructural proteins (nsps) of PRRSV, we showed that nsp11 could antagonize PCSK9&rsquo, s antiviral activity. Furthermore, mutagenic analyses of PRRSV nsp11 revealed that the endoribonuclease activity of nsp11 was critical for antagonizing the antiviral effect of PCSK9. Collectively, our data provide further insights into the interaction between PRRSV and the cell host and offer a new potential target for the antiviral therapy of PRRSV.
- Published
- 2020
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