1. Partial Least Squares Regression for Modeling of Complex Morphogenetic Cell Behaviors During Neural Tube Closure
- Author
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Kim, Juliana and Https://Orcid.Org/0000-0001-6634-4525
- Subjects
Shroom3 ,Xenopus ,partial least squares regression ,morphogenesis ,neural tube closure ,apical constriction - Abstract
During neural tube closure (NTC), a sheet-like structure of cells folds into a tube that forms the brain and spinal cord. Neural tube defects can arise when cells fail to constrict their apical surfaces, a process dependent on Shroom3. Yet, we lack understanding how Shroom3-constriction is achieved. Mechanisms of cell constriction in the developing embryo vary by organism and stage of development. Each observed constriction mechanism has been associated with a different model, the best-established being “ratchet-like” medioapical constriction, purse-string junctional constriction, and pulsed medioapical constriction. While these models help us distinguish mechanisms by attributes we can visually observe, we need methods to describe more complex mechanisms, with precision. Here, we present a framework to characterize cell constrictions quantitatively, according to cell parameters that are readily measurable and associated with morphogenesis, including protein localization, cell polarity, cell shape descriptors, and cell rearrangement. We use partial least squares regression (PLS) to understand which parameters are associated with cellular apical area changes and apply our framework to in-vivo time-lapse imaging of Xenopus tropicalis during NTC. Using PLS, we generate a model of cell constrictions in wild-type and Shroom3 mutant cells during NTC. Our comparisons highlight possible modes of apical constriction across developmental contexts.
- Published
- 2020
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