1. Single-cell characterization of anti-LAG-3 and anti-PD-1 combination treatment in patients with melanoma
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Jani Huuhtanen, Henna Kasanen, Katriina Peltola, Tapio Lönnberg, Virpi Glumoff, Oscar Brück, Olli Dufva, Karita Peltonen, Johanna Vikkula, Emmi Jokinen, Mette Ilander, Moon Hee Lee, Siru Mäkelä, Marta Nyakas, Bin Li, Micaela Hernberg, Petri Bono, Harri Lähdesmäki, Anna Kreutzman, Satu Mustjoki, Department of Computer Science, University of Helsinki, ICAN Digital Precision Cancer Medicine Flagship, University of Turku, University of Oulu, Professorship Lähdesmäki Harri, University of Oslo, Bristol-Myers Squibb, Computer Science Professors, Aalto-yliopisto, and Aalto University
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General Medicine - Abstract
Funding Information: Authorship note: JH and HK are co–first authors. AK and S Mustjoki are co–senior authors. Conflict of interest: OB has received consultancy fees from Novartis, Sanofi, and Amgen. BL is employed by and holds stock in BMS. PB is employed by Terveystalo, has a leadership role at Terveystalo, holds a consultant or advisory role at MSD Oncology, Ipsen, Faron Pharmaceuticals, Oncorena, TILT Biotherapeutics, EUSA Pharma, and Herantis Pharma, and owns stock in TILT Biotherapeutics, Faron Pharmaceuticals, and Terveystalo. MH has received honoraria from Pierre Fabre, Novartis, BMS, Merck Sharp & Dohme (MSD), Roche, Amgen, Sanofi, and Incyte. AK is employed by BMS. S Mustjoki has received honoraria and research funding from BMS, research funding from Novartis, Janpix, and Pfizer, and honoraria from Dren Bio. Copyright: © 2023, Huuhtanen et al. This is an open access article published under the terms of the Creative Commons Attribution 4.0 International License. Submitted: August 25, 2022; Accepted:January 25, 2023; Published: March 15, 2023. Reference information: J Clin Invest. 2023;133(6):e164809. https://doi.org/10.1172/JCI164809. Funding Information: We are deeply grateful to all the patients who participated in the study and generously contributed samples. This study was supported by the Cancer Foundation Finland, the Sigrid Juselius Foundation, the Signe and Ane Gyllenberg Foundation, the Relander Foundation, State funding for university-level health research in Finland, a Helsinki Institute of Life Sciences Fellow grant, the Academy of Finland (Decision 311081) (grant numbers 314442, 311081, 335432, and 335436), and an investigator-initiated research grant from BMS. JH was supported by the Finnish Hematology Association, the Blood Disease Research Foundation, the Helsinki Institute for Life Science, the Biomedicum Helsinki Foundation, the Finnish Medical Foundation, the K. Albin Johansson Foundation, the Kaute Foundation, the Finnish Cancer Foundation, the Paolo Foundation, and the Emil Aaltonen Foundation. We acknowledge the Turku Bioscience Centre Single-cell Omics Core Facility, the Finnish Functional Genomics Centre, the Institute for Molecular Medicine Finland (FIMM), and Biocenter Finland for infrastructure support and the computational resources provided by the Aalto Science-IT project. We acknowledge Susanna Miettinen and Kjersti Holmsen for providing patients' clinical details and Tiina Kasanen, Hanna Lähteenmäki and Jay Klievink for the processing of study samples. We acknowledge BMS Oncology team for providing clinical trial data. Figure 1 was created with BioRender.com. Funding Information: FUNDING. Cancer Foundation Finland, Sigrid Juselius Foundation, Signe and Ane Gyllenberg Foundation, Relander Foundation, State funding for university-level health research in Finland, a Helsinki Institute of Life Sciences Fellow grant, Academy of Finland (grant numbers 314442, 311081, 335432, and 335436), and an investigator-initiated research grant from BMS. Funding Information: We are deeply grateful to all the patients who participated in the study and generously contributed samples. This study was supported by the Cancer Foundation Finland, the Sigrid Juselius Foundation, the Signe and Ane Gyllenberg Foundation, the Relander Foundation, State funding for university-level health research in Finland, a Helsinki Institute of Life Sciences Fellow grant, the Academy of Finland (Decision 311081) (grant numbers 314442, 311081, 335432, and 335436), and an investigator-initiated research grant from BMS. JH was supported by the Finnish Hematology Association, the Blood Disease Research Foundation, the Helsinki Institute for Life Science, the Biomedicum Helsinki Foundation, the Finnish Medical Foundation, the K. Albin Johansson Foundation, the Kaute Foundation, the Finnish Cancer Foundation, the Paolo Foundation, and the Emil Aaltonen Foundation. We acknowledge the Turku Bioscience Centre Single-cell Omics Core Facility, the Finnish Functional Genomics Centre, the Institute for Molecular Medicine Finland (FIMM), and Biocenter Finland for infrastructure support and the computational resources provided by the Aalto Science-IT project. We acknowledge Susanna Miettinen and Kjersti Holmsen for providing patients’ clinical details and Tiina Kasanen, Hanna Lähteenmäki and Jay Klievink for the processing of study samples. We acknowledge BMS Oncology team for providing clinical trial data. Figure 1 was created with BioRender.com. Publisher Copyright: © 2023, Huuhtanen et al. BACKGROUND. Relatlimab plus nivolumab (anti-lymphocyte-activation gene 3 plus anti-programmed death 1 [anti-LAG-3+anti-PD-1]) has been approved by the FDA as a first-line therapy for stage III/IV melanoma, but its detailed effect on the immune system is unknown. METHODS. We evaluated blood samples from 40 immunotherapy-naive or prior immunotherapy-refractory patients with metastatic melanoma treated with anti-LAG-3+anti-PD-1 in a phase I trial using single-cell RNA and T cell receptor sequencing (scRNA+TCRαβ-Seq) combined with other multiomics profiling. RESULTS. The highest LAG3 expression was noted in NK cells, Tregs, and CD8+ T cells, and these cell populations underwent the most significant changes during the treatment. Adaptive NK cells were enriched in responders and underwent profound transcriptomic changes during the therapy, resulting in an active phenotype. LAG3+ Tregs expanded, but based on the transcriptome profile, became metabolically silent during the treatment. Last, higher baseline TCR clonality was observed in responding patients, and their expanding CD8+ T cell clones gained a more cytotoxic and NK-like phenotype. CONCLUSION. Anti-LAG-3+anti-PD-1 therapy has profound effects on NK cells and Tregs in addition to CD8+ T cells. TRIAL REGISTRATION. ClinicalTrials.gov (NCT01968109) FUNDING. Cancer Foundation Finland, Sigrid Juselius Foundation, Signe and Ane Gyllenberg Foundation, Relander Foundation, State funding for university-level health research in Finland, a Helsinki Institute of Life Sciences Fellow grant, Academy of Finland (grant numbers 314442, 311081, 335432, and 335436), and an investigator-initiated research grant from BMS.
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- 2023