280 results on '"Jia Geng"'
Search Results
2. Effect of cold rolling reduction on the precipitation behavior of σ phase in 2906 duplex stainless steel
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Jing-kun Li, Bin-guo Fu, Tian-shun Dong, Guo-lu Li, Wen-qing Sheng, Yong-yue Liu, and Jia-geng Liu
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Biomaterials ,Metals and Alloys ,Ceramics and Composites ,Surfaces, Coatings and Films - Published
- 2023
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3. JMJD3 Is Required for Acute Pancreatitis and Pancreatitis-Associated Lung Injury
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Li Chen, Xiangxian Zhang, Yu Liu, Li Liu, Xiao Liang, Shengqun Yang, Qing Xia, Tao Jin, Yun Ma, Yonghua Chen, Xia Yuan, Yan Tie, Yangzhuo Gu, Chunju Fang, Siyuan Chen, Fei Mo, Ting Yu, Yuzhu Hu, Zhiyong Qian, Yong Peng, Jia Geng, Zongguang Zhou, Min Wu, Jiansheng Ding, Daoke Yang, and Xiawei Wei
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Male ,Mice ,Pancreatitis ,Toll-Like Receptor 9 ,Acute Disease ,Innate Immunity and Inflammation ,Immunology ,NF-kappa B ,Animals ,Immunology and Allergy ,Lung Injury ,DNA, Mitochondrial - Abstract
Acute pancreatitis (AP) can be complicated by inflammatory disorders of remote organs, such as lung injury, in which Jumonji domain-containing protein 3 (JMJD3) plays a vital role in proinflammatory responses. Currently, we found that JMJD3 expression was upregulated in the pancreas and lung in an AP male mouse model, which was also confirmed in AP patients. Further experiments revealed that the upregulation of JMJD3 and proinflammatory effects were possibly exerted by mitochondrial DNA (mtDNA) or oxidized-mtDNA from tissue injury caused by AP. The release of mtDNA and oxidized-mtDNA contributed to the infiltration of inflammatory monocytes in lung injury through the stimulator of IFN genes (STING)/TLR9-NF-κB-JMJD3-TNF-α pathway. The inhibition of JMJD3 or utilization of Jmjd3-cKO mice significantly alleviated pulmonary inflammation induced by AP. Blocking mtDNA oxidation or knocking down the TLR9/STING pathway effectively alleviated inflammation. Therefore, inhibition of JMJD3 or STING/TLR9 pathway blockage might be a potential therapeutic strategy to treat AP and the associated lung injury.
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- 2023
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4. Secondary donor-derived CD19 CAR-T therapy is safe and efficacious in acute lymphoblastic leukemia with extramedullary relapse after first autologous CAR-T therapy
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Delin Kong, Tingting Yang, Jia Geng, Ruirui Jing, Qiqi Zhang, Guoqing Wei, He Huang, and Yongxian Hu
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Adult ,Receptors, Chimeric Antigen ,General Veterinary ,Recurrence ,Correspondence ,Antigens, CD19 ,Hematopoietic Stem Cell Transplantation ,Humans ,General Medicine ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,General Pharmacology, Toxicology and Pharmaceutics ,Immunotherapy, Adoptive ,General Biochemistry, Genetics and Molecular Biology - Abstract
Despite the advancement of treatments, adults with relapsed/refractory (R/R) B-lineage acute lymphoblastic leukemia (B-ALL) have poor prognosis, with an expected five-year overall survival (OS) rate of 10%‒20% (Nguyen et al., 2008; Oriol et al., 2010). Extramedullary relapse of B-ALL is regarded as a high-risk factor generally associated with poor survival, occurring in about 15% to 20% of all relapsed patients (Ding et al., 2017; Sun et al., 2018). The central nervous system (CNS) and the testes are the most common sites of extramedullary relapse of B-ALL. In addition, extramedullary leukemia can appear in the skin, eyes, breasts, bones, muscles, and abdominal organs. The prognosis of relapsed extramedullary B-ALL after allogeneic hematopoietic stem cell transplantation (allo-HSCT) is extremely poor (Spyridonidis et al., 2012; Dahlberg et al., 2019). Conventional chemotherapy or radiation is often ineffective in such patients. At present, there are no optimal treatment strategies for treating extramedullary leukemia after allo-HSCT.
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- 2022
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5. Particleboard from agricultural biomass and recycled wood waste: a review
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Seng Hua Lee, Wei Chen Lum, Jia Geng Boon, Lubos Kristak, Petar Antov, Marta Pędzik, Tomasz Rogoziński, Hamid R. Taghiyari, Muhammad Adly Rahandi Lubis, Widya Fatriasari, Sumit Manohar Yadav, Aujchariya Chotikhun, and Antonio Pizzi
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Biomaterials ,Metals and Alloys ,Ceramics and Composites ,agricultural biomass ,particleboard ,Surfaces, Coatings and Films - Abstract
The use of alternative raw materials such as agricultural biomass and recycled wood waste and by-products in particleboard production is a viable approach to respond to the increased global demand for wood-based materials, and it is a key circular economy principle as well. Wood chips are the second most costly element after resin in particleboard production, where both elements accounting for more than 50% of the overall production cost. Therefore, a significant cost reduction could be achieved by replacing wood chips with lignocellulosic agricultural wastes. Agricultural biomass exists in abundant post-harvest and post-production processes and can be served as an ideal alternative for particleboard manufacturing. This study aimed to review and evaluate the current state-of-the-art particleboard production using a wide variety of environmentally-friendly agricultural biomass, recycled wood waste, and by-products. In this review, the agricultural biomass used for particleboard production was classified into seven different groups based on the part of the plant which they are extracted from, i.e. straw, stalk, bagasse, seed/fruit, leaf, grass, and palms. Particleboards' properties of these raw materials were also compared in terms of their mechanical parameters. The last part of this review concluded the challenges and future potential of using agricultural biomass and recycled wood waste.
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- 2022
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6. Using machine learning models to predict acute pancreatitis in children with pancreaticobiliary maljunction
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Xiao, Han, Jia, Geng, Xin-Xian, Zhang, Lian, Zhao, Jian, Wang, and Wan-Liang, Guo
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Surgery ,General Medicine - Abstract
To develop a model to identify risk factors and predictors of acute pancreatitis in children with pancreaticobiliary maljunction (PBM).We screened consecutive PBM patients treated at two centers between January, 2015 and July, 2021. For machine learning, the cohort was divided randomly at a 6:4 ratio to a training dataset and a validation dataset. Three parallel models were developed using logistic regression (LR), a support vector machine (SVM), and extreme gradient boosting (XGBoost), respectively. Model performance was judged primarily based on the area under the receiver operating curves (AUC).A total of 99 patients were included in the analysis, 17 of whom suffered acute pancreatitis and 82 did not. The XGBoost (AUC = 0.814) and SVM (AUC = 0.813) models produced similar performance in the validation dataset; both outperformed the LR model (AUC = 0.805). Based on the SHapley Additive exPlanation values, the most important variable in both the XGBoost and SVM models were age, protein plugs, and white blood cell count.Machine learning models, especially XGBoost and SVM, could be used to predict acute pancreatitis in children with PBM. The most important contributing factor to the models were age, protein plugs, and white blood cell count.
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- 2022
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7. Damage of reservoir rock induced by CO2 injection
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Jing Li, Zhao-Yang Chen, Yong-Cun Feng, Li-Sha Qu, Jia-Geng Liu, Wen-Yan Li, and Meng-Ying Dai
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Geophysics ,Fuel Technology ,Geochemistry and Petrology ,Energy Engineering and Power Technology ,Economic Geology ,Geology ,Geotechnical Engineering and Engineering Geology - Published
- 2022
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8. Effective and Targeted Human Orthotopic Glioblastoma Xenograft Therapy via a Multifunctional Biomimetic Nanomedicine
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Roger S. Chung, Dongya Zhang, Bingyang Shi, Meng Zheng, Zhipeng Yang, Xue Xue, Jia Geng, Yiqing Lu, Yan Zou, and Yanjie Liu
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Materials science ,Erythrocytes ,Cell Survival ,medicine.medical_treatment ,Multifunctional nanoparticles ,02 engineering and technology ,010402 general chemistry ,Blood–brain barrier ,01 natural sciences ,Mice ,Biomimetic Materials ,Cell Line, Tumor ,medicine ,Effective treatment ,Animals ,Humans ,Tumor growth ,Doxorubicin ,General Materials Science ,Chemotherapy ,Mechanical Engineering ,021001 nanoscience & nanotechnology ,medicine.disease ,0104 chemical sciences ,medicine.anatomical_structure ,Cell Transformation, Neoplastic ,Nanomedicine ,Mechanics of Materials ,Cancer research ,0210 nano-technology ,Glioblastoma ,Peptides ,medicine.drug - Abstract
Glioblastoma multiforme (GBM) is a fatal central nervous system tumor without effective treatment. Chemotherapeutic agents are mainstays in the treatment of glioblastoma. However, the effectiveness of these is seriously hindered by poor blood-brain-barrier (BBB) penetrance and tumor targeting, together with short biological half-life. Improved chemotherapy is thus urgently needed for GBM. Multifunctional nanoparticle delivery systems offer much promise in overcoming current limitations. Accordingly, a multifunctional biomimetic nanomedicine is developed by functionalizing the surface of red blood cell membranes (RBCms) with angiopep-2 and loading pH-sensitive nanoparticles (polymer, doxorubicin (Dox), and lexiscan (Lex)) using the functionalized cell membrane to generate the novel nanomedicine, Ang-RBCm@NM-(Dox/Lex). The studies toward orthotopic U87MG human glioblastoma tumor-bearing nude mice show that the Ang-RBCm@NM-(Dox/Lex) nanomedicine has much improved blood circulation time, superb BBB penetration, superior tumor accumulation and retention. Moreover, effective suppression of tumor growth and significantly improved medium survival time are also observed after Ang-RBCm@NM-(Dox/Lex) treatment. The results show that this biomimetic nanoplatform can serve as a flexible and powerful system for GBM treatment which can be readily adapted for the treatment of other central nervous system (CNS) disorders.
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- 2023
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9. Multipurpose applications of bamboo as an activated carbon: An overview
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Danial Shamzari Bin Hashim, Jeng Young Liew, Jia Geng Boon, and Huck Ywih Ch'ng
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General Immunology and Microbiology ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology ,General Environmental Science - Abstract
Bamboo is a versatile resource for the synthesis of activated carbon. Low-cost precursors owing to a high growth rate and high carbon content in bamboo have consolidated its suitability as a renewable and notable alternative resource to activated carbon production. The attractiveness of bamboo activated carbon is due to its microcrystalline structure with a high porosity, fast absorption, and highly active surface area. Bamboo activated carbon can be synthesised via carbonisation and activation processes. The carbonisation process produces a substance with a colossal surface area to the mass ratio, which effective in holding various materials, minerals, humidity, odours, etc. Activation process involves the establishment of typical structures and advanced porosity to devise the high porosity of the solid activated carbon. Bamboo activated carbon can be used for energy-related reasons in environmental conservation, agriculture, soil amendment, animal feed additions, and wastewater treatment. It can also be used as a supplement in the composting and fermentation processes, utilised as a tar reduction catalyst in pyrolysis and gasification, as a pelletised fuel, and as a hydrogen production substrate. Numerous studies on activated carbon produced by diverse feedstocks are published in the areas of production, characterisation and possible uses and applications. Bamboo activated carbon is safeguarding its sphere of importance in today's era due to its multipurpose uses. The bamboo activated carbon is mostly used in the industrial, agricultural, and natural environment-related sectors. This paper presents a brief overview of the applications of bamboo activated carbon in numerous areas.
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- 2022
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10. Biological nanopores for sensing applications
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Ming Zhang, Chen Chen, Yanjing Zhang, and Jia Geng
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Nanopores ,Structural Biology ,Lipid Bilayers ,Proteins ,DNA ,Molecular Biology ,Biochemistry - Abstract
Biological nanopores are proteins with transmembrane pore that can be embedded in lipid bilayer. With the development of single-channel current measurement technologies, biological nanopores have been reconstituted into planar lipid bilayer and used for single-molecule sensing of various analytes and events such as single-molecule DNA sensing and sequencing. To improve the sensitivity for specific analytes, various engineered nanopore proteins and strategies are deployed. Here, we introduce the origin and principle of nanopore sensing technology as well as the structure and associated properties of frequently used protein nanopores. Furthermore, sensing strategies for different applications are reviewed, with focus on the alteration of buffer condition, protein engineering, and deployment of accessory proteins and adapter-assisted sensing. Finally, outlooks for de novo design of nanopore and nanopore beyond sensing are discussed.
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- 2022
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11. An improved method for manufacturing sheet-tube connection structure by double-sided annular sheet squeezing
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Peng-yi WANG, Jia-geng JIN, Ge-hui WAN, Chang-song ZHANG, Yu-cong WANG, Nan XIANG, Xue-ni ZHAO, and Zhong-jin WANG
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Control and Systems Engineering ,Mechanical Engineering ,Industrial and Manufacturing Engineering ,Software ,Computer Science Applications - Published
- 2022
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12. Recent Progresses of Biosensors for the Detection of Lung Cancer Markers
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Shanchuan Chen, Minghan Li, Ting Weng, Deqiang Wang, and Jia Geng
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Biomedical Engineering ,General Materials Science ,General Chemistry ,General Medicine - Abstract
Lung cancer is one of the most common cancers worldwide and the leading cause of death. Early screening of lung cancer is exceptionally essential for later treatment. Abnormal lung cancer...
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- 2023
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13. Predicting dynamic characteristics of a submerged vertical cylinder in the wide-frequency domain based on the wavelet fluid-solid interaction method (WFSIM)
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Jia Geng, Ming Li, Jinxin Liu, Yilong Liu, Xingwu Zhang, Xuefeng Chen, and Zengguang Li
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Environmental Engineering ,Ocean Engineering - Published
- 2023
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14. On Aircraft Trajectory Type Recognition Based on Frequent Route Patterns
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SONG Jia-geng, ZHANG Fu-sang, JIN Bei-hong, DOU Zhu-mei
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QA76.75-76.765 ,T1-995 ,trajectory classification|aircraft trajectory|pattern mining|frequent route patterns|trajectory pattern mining ,Computer software ,Technology (General) - Abstract
With the development of global positioning and radar technology,more and more trajectory data can be collected.In particular,trajectories generated by aircrafts,ships,migratory birds are complicated and varied,and free from any constraints on the ground.For helping identifying the behaviors and intention of the flying objects,the recognition of the type of the aircraft tra-jectories has important value.Specifically,on the basis of identifying frequent route patterns,the paper proposes a new method,consisting of a frequent route patterns extracting algorithm and a convolution neural network model.The extracting algorithm first gets key points from the compressed trajectory,next finds the closed routes through the self-intersecting points of the trajectory,then discovers frequent patterns in the closed routes and treats them as the basis of classification.Further,the model recognizes the trajectory type via image analyses.This paper conducts extensive experiments on the real aircraft trajectory data disclosed on the FlightRadar24 website as well as the simulated data.The experimental results show that our method can effectively identify complex trajectory types.Compared with LeNet-5 CNN classification without trajectory extraction,our method has the superior performance,achieving an average accuracy of more than 95% for trajectory classification.
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- 2021
15. Cryo-EM structures of human TMEM120A and TMEM120B
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Zhen Yan, Dong Deng, Qiang Su, Jianping Wu, Shirong Lai, Yue Yu, Jia Geng, Changjian Zhao, Wei-Zheng Zeng, Lina Yang, Kun Wu, Meng Ke, and Weidan Yuan
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Coiled coil ,QH573-671 ,Chemistry ,Cryo-electron microscopy ,Bilayer ,Lipid metabolism ,Cell Biology ,Biochemistry ,Transmembrane protein ,Transmembrane domain ,Cryoelectron microscopy ,Correspondence ,Genetics ,Biophysics ,Heterologous expression ,Cytology ,Molecular Biology ,Ion channel signalling ,Ion channel - Abstract
TMEM120A (Transmembrane protein 120A) was recently identified as a mechanical pain sensing ion channel named as TACAN, while its homologue TMEM120B has no mechanosensing property1. Here, we report the cryo-EM structures of both human TMEM120A and TMEM120B. The two structures share the same dimeric assembly, mediated by extensive interactions through the transmembrane domain (TMD) and the N-terminal coiled coil domain (CCD). However, the nearly identical structures cannot provide clues for the difference in mechanosensing between TMEM120A and TMEM120B. Although TMEM120A could mediate conducting currents in a bilayer system, it does not mediate mechanical-induced currents in a heterologous expression system, suggesting TMEM120A is unlikely a mechanosensing channel. Instead, the TMDs of TMEM120A and TMEM120B resemble the structure of a fatty acid elongase, ELOVL7, indicating their potential role of an enzyme in lipid metabolism.
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- 2021
16. The classical mechanics engineered of Bambusa vulgaris and Schizostachyum brachycladum
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Mohd Hazim Mohamad Amini, Mohamad Saiful Sulaiman, Rokiah Hashim, Sitti Fatimah Mhd Ramle, Othman Sulaiman, and Jia Geng Boon
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Schizostachyum brachycladum ,Botany ,Bambusa vulgaris ,Biology ,biology.organism_classification - Abstract
Physical and mechanical properties of Bambusa vulgaris and Schizostachyum brachycladum wereinvestigated. The sample were classified into two different ages which are young and mature foreach culm of bamboo. The aim of this study to investigate the physical properties such as density,basic density, moisture content, water absorption and thickness swelling. Other than that, themechanical properties also help to determine their flexural test for modulus of rupture (MOR) andmodulus of elasticity (MOE). The method used to analyse physical and mechanical properties werefollowing the ISO standard. From this study, young Bambusa vulgaris has indicated the highercontent of moisture content, water absorption and thickness swelling with 67.66%, 2.69% and34.03%, respectively while mature Schizostachyum brachycladum has shown the higher value inbasic density, density, and flexural test for MOR and MOE with 876.33 kg/m3, 1084.49 kg/m3, 317.01 N/mm2 and 122986.18 N/mm2, respectively.
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- 2021
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17. Nanopore Electrochemistry for Pathogen Detection
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Yuan Ju, Mengjun Pu, Ke Sun, Guiqin Song, and Jia Geng
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Nanopores ,Organic Chemistry ,Electrochemistry ,Humans ,Sequence Analysis, DNA ,General Chemistry ,Biochemistry - Abstract
Pathogen infections seriously threaten human health, and there is an urgent demand for rapid and efficient pathogen identification to provide instructions in clinical diagnosis and therapeutic intervention. Recently, nanopore technology, a rapidly maturing technology which delivers ultrasensitive sensing and high throughput in real-time and at low cost, has achieved success in pathogen detection. Furthermore, the remarkable development of nanopore sequencing, for example, the MinION sequencer from Oxford Nanopore Technologies (ONT) as a competitive sequencing technology, has facilitated the rapid analysis of disease-related microbiomes at the whole-genome level and on a large scale. Here, we highlighted recent advances in nanopore approaches for pathogen detection at the single-molecule level. We also overviewed the applications of nanopore sequencing in pathogenic bacteria identification and diagnosis. In the end, we discussed the challenges and future developments of nanopore technology as promising tools for the management of infections, which may be helpful to aid understanding as well as decision-making.
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- 2022
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18. Role of potential bioactive metabolites from traditional Chinese medicine for type 2 diabetes mellitus: An overview
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Xiang Li, Jia-Jia Geng-Ji, Yun-Yun Quan, Lu-Ming Qi, Qiang Sun, Qun Huang, Hai-Mei Jiang, Zi-Jian Sun, Hong-Mei Liu, and Xin Xie
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Pharmacology ,Pharmacology (medical) - Abstract
Type 2 diabetes mellitus (T2DM) is a metabolic disease with persistent hyperglycemia primarily caused by insulin resistance (IR). The number of diabetic patients globally has been rising over the past decades. Although significant progress has been made in treating diabetes mellitus (DM), existing clinical drugs for diabetes can no longer fully meet patients when they face complex and huge clinical treatment needs. As a traditional and effective medical system, traditional Chinese medicine (TCM) has a unique understanding of diabetes treatment and has developed many classic and practical prescriptions targeting DM. With modern medicine and pharmacy advancements, researchers have discovered that various bioactive metabolites isolated from TCM show therapeutic on DM. Compared with existing clinical drugs, these bioactive metabolites demonstrate promising prospects for treating DM due to their excellent biocompatibility and fewer adverse reactions. Accordingly, these valuable metabolites have attracted the interest of researchers worldwide. Despite the abundance of research works and specialized-topic reviews published over the past years, there is a lack of updated and systematic reviews concerning this fast-growing field. Therefore, in this review, we summarized the bioactive metabolites derived from TCM with the potential treatment of T2DM by searching several authoritative databases such as PubMed, Web of Science, Wiley Online Library, and Springer Link. For the convenience of readers, the content is divided into four parts according to the structural characteristics of these valuable compounds (flavonoids, terpenoids, alkaloids, and others). Meanwhile, the detailed mechanism and future directions of these promising compounds curing DM are also summarized in the related sections. We hope this review inspires increasingly valuable and significant research focusing on potential bioactive metabolites from TCM to treat DM in the future.
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- 2022
19. The ER Calcium Channel Csg2 Integrates Sphingolipid Metabolism with Autophagy
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Shiyan Liu, Mutian Chen, Yichang Wang, Yuqing Lei, Yabin Zhang, Ting Huang, Huihui Li, Shiqian Qi, Jia Geng, and Kefeng Lu
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Sphingolipids are ubiquitous components of membranes and function as bioactive lipid signaling molecules. Here, through genetic screening and lipidomics analyses, we found that the endoplasmic reticulum (ER) calcium channel Csg2 integrates sphingolipid metabolism with autophagy by regulating ER calcium homeostasis in the yeast Saccharomyces cerevisiae. Csg2 functions as a calcium release channel and maintains calcium homeostasis in the ER, which enables normal functioning of the essential sphingolipid synthase Aur1. Deletion of Csg2 causes increases in calcium levels in the ER and then disturbs Aur1 stability, leading to accumulation of the bioactive sphingolipid phytosphingosine, which specifically and completely blocks autophagy and induces loss of starvation resistance in cells. Our findings indicate that calcium homeostasis in the ER mediated by the channel Csg2 translates sphingolipid metabolism into autophagy regulation, further supporting the role of the ER as a signaling hub for calcium homeostasis, sphingolipid metabolism and autophagy.
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- 2022
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20. Homogeneous Visual and Fluorescence Detection of Circulating Tumor Cells in Clinical Samples via Selective Recognition Reaction and Enzyme-Free Amplification
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Yunjin Bai, He Yaqin, Yi Xie, Ronghui Zhou, Walter Hu, Jie Chen, Yue Wang, Mei Li, Juan Zhou, Binwu Ying, Runlian Qu, Tangyuheng Liu, Wu Peng, Jia Geng, Jin Huang, Piaopiao Chen, Ke Huang, and Xiu Wang
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Lung Neoplasms ,Aptamer ,General Physics and Astronomy ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Circulating tumor cell ,Limit of Detection ,Quantum Dots ,Cadmium Compounds ,medicine ,Humans ,General Materials Science ,Lung cancer ,Whole blood ,A549 cell ,Chemistry ,Mucin-1 ,Mucin ,General Engineering ,Neoplastic Cells, Circulating ,021001 nanoscience & nanotechnology ,medicine.disease ,Molecular biology ,Fluorescence ,0104 chemical sciences ,Spectrometry, Fluorescence ,Naked eye ,Tellurium ,0210 nano-technology - Abstract
Here we report a simple all-nucleic-acid enzyme-free catalyzed hairpin assembly assisted amplification strategy with quantum dots (QDs) as the nanoscale signal reporter for homogeneous visual and fluorescent detection of A549 lung cancer cells from clinical blood samples. This work was based on the phenomenon that CdTe QDs can selectively recognize Agsup+/supand C-Agsup+/sup-C and by using mucin 1 as the circulating tumor cells (CTCs) marker and aptamer as the recognition probe. Under optimized conditions, the limits of detections as low as 0.15 fg/mL of mucin 1 and 3 cells/mL of A549 cells were achieved with fluorescence signals. A 1 fg/mL concentration of mucin 1 and 100 cells/mL of A549 can be distinguished by the naked eye. This method was used to quantitatively analyze CTCs in 51 clinical whole blood samples of patients with lung cancer. The levels of CTCs detected in clinical samples by this method were consistent with those obtained using the folate receptor-polymerase chain reaction clinical test kit and correlated with radiologic and pathological findings.
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- 2021
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21. A new nano-scale rhombic precipitate in the SiC ceramic manufactured by milling-sintering process
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Jing-kun Li, Bin-guo Fu, Tian-shun Dong, Guo-lu Li, Yong-yue Liu, Jia-geng Liu, Chun-yang Wang, and Wei Cui
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Published
- 2023
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22. Effect of bleaching using sodium hydroxide on pulp derived from Sesbania grandiflora
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Kuek Sook Chi, Boon Jia Geng, Wong We Hoong, Goh Kent Tiong, Tan Shioa Wei, and Low Hui Qi
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food.dish ,Pulp (paper) ,Pulpwood ,Sesbania grandiflora ,engineering.material ,Pulp and paper industry ,stomatognathic diseases ,chemistry.chemical_compound ,food ,stomatognathic system ,chemistry ,Kraft process ,Sodium hydroxide ,engineering - Abstract
World demand for paper is increasing. Short rotation pulpwood is needed. Sesbania grandiflora also known as Turi, is a fast growing and straight log species. The scholarly information of Turi as pulpwood are still limited. This paper aims to provide information of sodium hydroxide effect on the paper made from pulp derived from Turi. Sodium hydroxide is a common chemical using as part of full stage chemical bleaching in pulp industrial. Kraft pulp that produced using Turi, was bleached with sodium hydroxide at 3%, 6% and 9% based on pulp weight, respectively. Unbleached pulp was served as blank test. The optical and mechanical properties of handsheet paper made from bleached kraft pulp were evaluated according to TAPPI standard. The brightness and opacity of handsheet made from bleached pulp were improved with increasing the concentration of sodium hydroxide. The mechanical properties of handsheet were improved with using 3% sodium hydroxide and gradually decreased after 3% sodium hydroxide. In conclusion, sodium hydroxide is potential to improve optical properties of Turi pulp and improve the mechanical properties of paper made from Turi pulp at certain level. Excessive usage of sodium hydroxide brings adverse effect to mechanical properties of paper made from Turi pulp.
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- 2021
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23. The association between vaginal microbiota and female infertility: a systematic review and meta-analysis
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Mengwen Zhu, Jia Geng, Xiaoyue Zhu, Bei Wang, Jiechen Yin, Shenghao Fang, Jun Ma, Xiang Hong, Hongxia Zhao, Meng Ye, and Yan Xuan
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Infertility ,medicine.medical_specialty ,03 medical and health sciences ,0302 clinical medicine ,RNA, Ribosomal, 16S ,Internal medicine ,medicine ,Humans ,030219 obstetrics & reproductive medicine ,business.industry ,Microbiota ,Female infertility ,Obstetrics and Gynecology ,Vaginosis, Bacterial ,General Medicine ,Odds ratio ,Publication bias ,medicine.disease ,Confidence interval ,Lactobacillus ,030220 oncology & carcinogenesis ,Meta-analysis ,Vagina ,Inclusion and exclusion criteria ,Female ,Nugent score ,business ,Infertility, Female - Abstract
This study aimed to explore the association between vaginal microbiota and infertility. We searched a range of electronic databases for appropriate articles, including PubMed, Web of Science, Embase, Chinese National Knowledge Infrastructure (CNKI), and Wanfang, from inception to 8th September 2019. Identified articles were then screened using strict inclusion and exclusion criteria. By referring to Tamarelle’s method, we divided vaginal microbiota into two categories: low-Lactobacillus vaginal microbiota (LL-VMB) and high-Lactobacillus vaginal microbiota (HL-VMB). Patients were defined as HL-VMB if they had a Nugent score of 0–3, a negative Amesel/Spiegel’s test, or if the vaginal community status was dominated by either L. crispatus, L. iners, L. gasseri and L. jensenii via 16S rRNA sequencing. Otherwise, cases were regarded as LL-VMB. Statistical analyses were performed with STATA 13.0 statistical software. Effect estimates are presented as odds ratios (ORs) with 95% confidence intervals (CIs). Fifteen articles were included in our final analysis. The HL-VMB was negatively related to infertility; a fixed model showed that the pooled OR was 0.83 (95% CI 0.77–0.90). There was no significant publication bias, as determined by Begg’s test (P = 0.488) and Egger’s test (P = 0.652). Using a random effect model, the pooled OR for intermediate bacterial vaginitis (BV) and infertility was 1.39 (95% CI 1.10–1.76) and the pooled OR for positive BV was 1.72 (95% CI 1.10–2.69). Subgroup and sensitivity analyses further demonstrated that the associations identified were stable. However, the acquired evidence was not sufficient to make inferences with regards to the mechanisms underlying these relationships. This systematic review and meta-analysis identified a negative correlation between HL-VMB and female infertility. However, due to a variety of limitations, the evidence acquired does not allow us to identify the specific mechanisms underlying this association. Further high-quality studies are needed to verify the causal relationship and explore the molecular mechanisms involved.
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- 2020
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24. Thiol inhibition of Hg cold vapor generation in SnCl2/NaBH4 system: A homogeneous bioassay for H2O2/glucose and butyrylcholinesterase/pesticide sensing by atomic spectrometry
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Chengbin Zheng, Jia Geng, Chuan Chen, Pingyue Hu, Xiu Wang, Ke Huang, and Piaopiao Chen
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chemistry.chemical_classification ,Analyte ,Chromatography ,010401 analytical chemistry ,02 engineering and technology ,Atomic spectroscopy ,021001 nanoscience & nanotechnology ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Parathion ,chemistry ,Thiol ,Environmental Chemistry ,Bioassay ,0210 nano-technology ,Hydrogen peroxide ,Selectivity ,Spectroscopy ,Butyrylcholinesterase - Abstract
Recently, the use of atomic spectrometry (AS) for biochemical analysis has attracted considerable attention due to its high sensitivity, selectivity and anti-interference ability. In this work, we conducted a detailed study on a phenomenon of thiol inhibition of mercury (Hg2+) cold vapor generation (CVG) and found L-cysteine (L-Cys), glutathione (GSH), dithiothreitol, N-Acetyl-L-cysteine, 3-mercaptopropionic acid, β-mercaptoethanol, and NaI can inhibit the CVG of Hg2+, while EDTA has no inhibitory effect. Furthermore, changing the content of –SH can effectively adjust the CVG atomic fluorescence spectrometer (CVG-AFS) signal of Hg2+. As as a consequence, an AS-based homogeneous bioassay was constructed by adjusting the oxidation ratio and production quantity of –SH in the system. The quantitative analysis of the system was demonstrated by using AFS as a representative detector. Hydrogen peroxide (H2O2) and glucose were used as representative analytes for the validation of Hg2+ atomic fluorescence signal turn-off strategy, and butyrylcholinesterase (BChE) as well as parathion (organophosphorus pesticides, OPs) as utilized as representative targets for the signal turn-on strategy. Under optimal experimental conditions, the homogeneous CVG-AFS sensor can be successfully used to detect 3 μM H2O2, 30 μM glucose, 0.25 U/L BChE, and 0.4 μg/mL parathion. In addition, the detection results of glucose and BChE in human serum samples agreed well with those obtained by using glucometer and kit, showing the promising potential of this method for practical applications. Therefore, this work provides a perspective for the construction of AS-based homogeneous bioassays and shows great potential for the detection of biomarkers.
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- 2020
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25. Effects of sodium benzoate on growth and physiological characteristics of wheat seedlings under compound heavy metal stress
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Chen Zhao, Ji-jia Geng, Yuan Lin, Yuan Chen, Dehua Chen, Pan-pan Liang, and Xiang Zhang
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0106 biological sciences ,wheat seedlings ,Osmotic shock ,compound heavy metals ,Agriculture (General) ,sodium benzoate ,Plant Science ,01 natural sciences ,Biochemistry ,S1-972 ,Superoxide dismutase ,chemistry.chemical_compound ,Food Animals ,Food science ,Proline ,Chlorophyll fluorescence ,Ecology ,biology ,04 agricultural and veterinary sciences ,Malondialdehyde ,physiological characteristics ,chemistry ,Osmolyte ,Chlorophyll ,040103 agronomy & agriculture ,Sodium benzoate ,biology.protein ,0401 agriculture, forestry, and fisheries ,Animal Science and Zoology ,Agronomy and Crop Science ,010606 plant biology & botany ,Food Science - Abstract
In this study, we investigated the effect of exogenous sodium benzoate on wheat seedlings (Yangmai 16) grown under heavy metal stress. The results showed that 2.4 mmol kg−1 of heavy metals significantly inhibited growth and delayed emergence of wheat seedlings. Under compound heavy metal stress, application of 2–4 g L−1 sodium benzoate significantly increased (P>0.01) chlorophyll content and chlorophyll fluorescence parameters Fv/Fm and Fv/Fo of wheat, compared to the control (water treatment). Further analysis showed that application of 2–4 g L−1 sodium benzoate alleviated osmotic stress by promoting the accumulation of osmolytes such as soluble proteins and free proline, increased the activity of superoxide dismutase (SOD) and reduced malondialdehyde content (MDA). In contrast, higher concentrations of sodium benzoate solution (>6 g L−1) inhibited the growth of wheat seedlings and even caused damage to seedlings. Correlation analysis showed that when the sodium benzoate concentration was in the range of 1.97–3.12 g L−1 (2016) and 1.58–3.27 g L−1 (2017), values of chlorophyll and its components, root activity, SOD activity, soluble protein, and free proline content were the highest. When the sodium benzoate concentration was raised to 2.59 g L−1 (2016) or 3.02 g L−1 (2017), MDA content was the lowest. Ultimately, exogenous sodium benzoate (2–4 g L−1) facilitates root development and improves the root activity of wheat seedlings grown under compound heavy metals stress, thereby effectively alleviating the damage of compound heavy metal stress in wheat seedlings.
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- 2020
26. Machine learning in nephrology: scratching the surface
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Qi Li, Qiu-Ling Fan, Qiu-Xia Han, Wen-Jia Geng, Huan-Huan Zhao, Xiao-Nan Ding, Jing-Yao Yan, Han-Yu Zhu, and Yuan-Yuan Ji
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Nephrology ,medicine.medical_specialty ,Computer science ,medicine.medical_treatment ,education ,lcsh:Medicine ,Machine learning ,computer.software_genre ,Field (computer science) ,Machine Learning ,03 medical and health sciences ,0302 clinical medicine ,Chronic Kidney Diseases ,Internal medicine ,medicine ,Humans ,Review Articles ,Dialysis ,Kidney diseases ,business.industry ,lcsh:R ,Acute kidney injury ,General Medicine ,medicine.disease ,Prognosis ,Data preservation ,030220 oncology & carcinogenesis ,Artificial intelligence ,business ,computer ,030217 neurology & neurosurgery ,Algorithms - Abstract
Machine learning shows enormous potential in facilitating decision-making regarding kidney diseases. With the development of data preservation and processing, as well as the advancement of machine learning algorithms, machine learning is expected to make remarkable breakthroughs in nephrology. Machine learning models have yielded many preliminaries to moderate and several excellent achievements in the fields, including analysis of renal pathological images, diagnosis and prognosis of chronic kidney diseases and acute kidney injury, as well as management of dialysis treatments. However, it is just scratching the surface of the field; at the same time, machine learning and its applications in renal diseases are facing a number of challenges. In this review, we discuss the application status, challenges and future prospects of machine learning in nephrology to help people further understand and improve the capacity for prediction, detection, and care quality in kidney diseases.
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- 2020
27. Preparation of Al/Ni Reactive Multilayer Foils and its Application in Thermal Battery
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Qi-bing Wu, Jia Geng, Yanli Zhu, Qing-fen Meng, Shi Yan, Peng-long Zhao, Jian-yong Wang, and Fang Wang
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Inorganic Chemistry ,Chemistry ,Metallurgy ,Combustion ,Thermal Battery - Published
- 2020
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28. A designed locked nucleic acid-based nanopore for discriminating ctDNA and its coexisting analogue ncDNA
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Yuqin Huang, Cuisong Zhou, Jia Geng, You Lv, and Dan Xiao
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Chemistry ,02 engineering and technology ,General Chemistry ,Computational biology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Biomarker (cell) ,Nanopore ,Circulating tumor DNA ,Circulating DNA ,Locked nucleic acid ,0210 nano-technology - Abstract
Circulating tumor DNA (ctDNA), carrying tumor-specific sequence mutations, is a promising biomarker for classification, diagnosis and prognosis of cancers. However, there is still a great challenge in discriminating single-base difference between ctDNA and its coexisting analogue (normal circulating DNA, ncDNA) at a serum sample. A locked nucleic acid (LNA) probe combined with α-HL nanopore sensor was designed, which achieved a high signal-to-background ratio (SBR) of ∼8.34 × 103, as well as a significant discrimination capability (∼12.3 times) of single-base difference. The accurate discrimination strategy is label-free, convenient, selective and sensitive, which has great potential in the early diagnosis of diseases and biomedical research fields.
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- 2020
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29. Rapid and highly sensitive visual detection of oxalate for metabolic assessment of urolithiasis via selective recognition reaction of CdTe quantum dots
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Jia Geng, Ming Zhang, Xinyi Wang, Piaopiao Chen, Binwu Ying, Yunjin Bai, Wuran Wei, Shixin Yan, Yin Tang, and Jia Wang
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Detection limit ,Oxalates ,Time Factors ,Chromatography ,Biomedical Engineering ,General Chemistry ,General Medicine ,Oxalate ,Cadmium telluride photovoltaics ,Cell Line ,Highly sensitive ,chemistry.chemical_compound ,Visual detection ,Urolithiasis ,chemistry ,Limit of Detection ,Quantum dot ,Homogeneous ,Quantum Dots ,Cadmium Compounds ,Humans ,General Materials Science ,Naked eye ,Tellurium - Abstract
Urolithiasis is a common disease that affects 5% to 8.8% of the world population with high recurring frequency. Therefore, there is an urgent need for the rapid and efficient diagnostics of urolithiasis. In this study, we developed a quantum dots (QDs)-based sensor for detecting urolithiasis oxalate. Urolithiasis oxalate was quantified by reducing Cu2+ to Cu+, which can be selectively recognized by CdTe QDs. The homogeneous sensing system shows high sensitivity for oxalate detection in the range of 0.1 μM to 10 mM within 6 min; moreover, the visual detection of 10 μM oxalate could be achieved by the naked eye. Our method was tested on 53 clinical samples; it showed 100% specificity and sensitivity for calcium oxalate urolithiasis compared with clinical diagnosis, even for hematuria samples. Furthermore, this method can be expanded to other wide range of biochemistry applications for medical diagnosis and point-of-care testing.
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- 2020
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30. Chondromyxoid fibroma-like osteosarcoma: a case series and literature review
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Weiwu Yao, Yangfan Hu, Jingyu Zhong, Qiong Jiao, Liping Si, Jia Geng, Huizhen Zhang, and Yue Xing
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Adult ,Male ,medicine.medical_specialty ,lcsh:Diseases of the musculoskeletal system ,medicine.medical_treatment ,Chondrosarcoma ,Case Report ,Bone Neoplasms ,Ribs ,Fibroma ,Mandible ,030218 nuclear medicine & medical imaging ,Metastasis ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Rheumatology ,Biopsy ,Maxilla ,Humans ,Medicine ,Orthopedics and Sports Medicine ,Metatarsal Bones ,Retrospective Studies ,Osteosarcoma ,Chondromyxoid fibroma-like osteosarcoma ,medicine.diagnostic_test ,business.industry ,Femoral Neoplasms ,Chondromyxoid fibroma ,Middle Aged ,medicine.disease ,Conventional Osteosarcoma ,Radiation therapy ,Low-grade central osteosarcoma ,030220 oncology & carcinogenesis ,Radiological weapon ,Female ,Radiology ,lcsh:RC925-935 ,business - Abstract
Background Chondromyxoid fibroma-like osteosarcoma (CMF-OS) is an exceedingly rare subtype of low-grade central osteosarcoma (LGCO), accounting for up to 10% of cases and making it difficult to diagnose. CMF-OS is frequently misdiagnosed on a radiological examination and biopsy, even after the initial operation. Its treatment is a controversial issue due to its low-grade classification and actual high-grade behavior. Case presentation We retrospectively reviewed the medical charts of more than 2000 osteosarcoma patients between 2008 and 2019; 11 patients with CMF-OS were identified, of which six patients were treated by our institution with complete clinical characteristics, including treatment and prognosis, radiological and pathological features were reviewed. Three males and three females with a median age of 46 (range 22–56) years were pathologically proven to have CMF-OS. The radiological presentation of CMF-OS is variable, thus radiological misdiagnoses are common. However, one must not ignore a malignant radiologic appearance. The most distinctive pathological feature conferring the diagnosis of CMF-OS is the presence of osteoid production directly by the tumor cells under a chondromyxoid fibroma (CMF)-like background. Differential diagnoses based on comprehensive data from CMF, LGCO, chondrosarcoma (CHS), conventional osteosarcoma (COS), etc., are needed. All patients were treated with an operation and chemotherapy, and one patient received additional radiotherapy. Nevertheless, recurrence and metastasis are common in CMF-OS patients. Relatively invasive biological behavior of CMF-OS is against the low-grade classification of this disease. Conclusions It is important to recognize CMF-OS and distinguish it from CMF, CHS, COS and other LGCOs. CMF-OS has a relatively poor prognosis despite its low-grade classification.
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- 2020
31. Sugarcane (Saccharum officinarium L.) bagasse binderless particleboard: Effect of hot pressing time study
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Norani Abd Karim, Jia Geng Boon, Asniza Mustapha, Mohd Edyazuan Azni, Othman Sulaiman, Rokiah Hashim, Wan Noor Aidawati Wan Nadhari, and Kushairi Mohd Salleh
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010302 applied physics ,Pressing ,Absorption of water ,Materials science ,biology ,Young's modulus ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Pulp and paper industry ,Hot pressing ,biology.organism_classification ,01 natural sciences ,symbols.namesake ,Flexural strength ,Saccharum officinarum ,0103 physical sciences ,medicine ,symbols ,Swelling ,medicine.symptom ,0210 nano-technology ,Bagasse - Abstract
Binderless particleboard panel made from sugarcane (Saccharum officinarum L.) bagasse was manufactured by using waste product of sugarcane. The target density, pressing temperature, pressing time and pressing pressure used were 0.8 g/cm3, 180 °C, 10–40 min and 12 Mpa respectively. Modulus of rupture, internal bonding strength, thickness swelling and water absorption of the boards were evaluated based on Japanese Industrial Standards (JIS A 5908: Particleboards). From this research, the 30 min pressing time panel had the highest modulus of rupture (MOR) and modulus of elasticity (MOE) values which were 15.16 Mpa and 1710 MPa respectively. Panels made from sugarcane bagasse with hot pressing time of 20, 30 and 40 min met the mechanical properties requirement stated in Japanese Industrial Standard (JIS). Nevertheless, the sastifactory results were obtained for water absorption (WA) and thickness swelling (TS) test ranged from 8% to 25%. Therefore, the binderless particleboard made from sugarcane bagasse waste were successfully manufactured and can be alternative and consideration for building material especially for indoor application.
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- 2020
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32. Histones released by NETosis enhance the infectivity of SARS-CoV-2 by bridging the spike protein subunit 2 and sialic acid on host cells
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Weiqi Hong, Jingyun Yang, Jun Zou, Zhenfei Bi, Cai He, Hong Lei, Xuemei He, Xue Li, Aqu Alu, Wenyan Ren, Zeng Wang, Xiaohua Jiang, Kunhong Zhong, Guowen Jia, Yun Yang, Wenhai Yu, Qing Huang, Mengli Yang, Yanan Zhou, Yuan Zhao, Dexuan Kuang, Junbin Wang, Haixuan Wang, Siyuan Chen, Min Luo, Ziqi Zhang, Tianqi Lu, Li Chen, Haiying Que, Zhiyao He, Qiu Sun, Wei Wang, Guobo Shen, Guangwen Lu, Zhiwei Zhao, Li Yang, Jinliang Yang, Zhenling Wang, Jiong Li, Xiangrong Song, Lunzhi Dai, Chong Chen, Jia Geng, Maling Gou, Lu Chen, Haohao Dong, Yong Peng, Canhua Huang, Zhiyong Qian, Wei Cheng, Changfa Fan, Yuquan Wei, Zhaoming Su, Aiping Tong, Shuaiyao Lu, Xiaozhong Peng, and Xiawei Wei
- Subjects
Histones ,Mice ,Protein Subunits ,Infectious Diseases ,SARS-CoV-2 ,Immunology ,Spike Glycoprotein, Coronavirus ,Immunology and Allergy ,Animals ,COVID-19 ,Virus Internalization ,N-Acetylneuraminic Acid - Abstract
Neutrophil extracellular traps (NETs) can capture and kill viruses, such as influenza viruses, human immunodeficiency virus (HIV), and respiratory syncytial virus (RSV), thus contributing to host defense. Contrary to our expectation, we show here that the histones released by NETosis enhance the infectivity of SARS-CoV-2, as found by using live SARS-CoV-2 and two pseudovirus systems as well as a mouse model. The histone H3 or H4 selectively binds to subunit 2 of the spike (S) protein, as shown by a biochemical binding assay, surface plasmon resonance and binding energy calculation as well as the construction of a mutant S protein by replacing four acidic amino acids. Sialic acid on the host cell surface is the key molecule to which histones bridge subunit 2 of the S protein. Moreover, histones enhance cell–cell fusion. Finally, treatment with an inhibitor of NETosis, histone H3 or H4, or sialic acid notably affected the levels of sgRNA copies and the number of apoptotic cells in a mouse model. These findings suggest that SARS-CoV-2 could hijack histones from neutrophil NETosis to promote its host cell attachment and entry process and may be important in exploring pathogenesis and possible strategies to develop new effective therapies for COVID-19.
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- 2022
33. Effect of hydrogen peroxide bleaching duration on Sesbania grandiflora pulp
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Jing Xian Liew, Chek Swee Loh, Jia Geng Boon, Suganthi Apalasamy, Jeng Young Liew, Wan Noor Aidawati Wan Nadhari, and Cheu Peng Leh
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- 2022
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34. Malaysian wood vinegar as potential vegetative booster
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Jia Geng Boon, Suganthi Apalasamy, Jing Xian Liew, Nivaarani Arumugam, Jeng Young Liew, Jayaraj Vijaya Kumaran, Maryana Mohamd Nor, Ah Noong Foo, Meng Sang Shum, and Mohd Rafi Rasedy Roslan
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- 2022
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35. Optimization of wood saw dust (WSD) as pore forming agent for porous ceramic using response surface methodology (RSM) statistical design
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Afiqah Awang Kechik, Nur Atikah Muhammad Tharmizi, Arlina Ali, Mustaffa Ali Azhar Taib, Mardawani Mohamad, Jia Geng Boon, Mohamad Najmi Masri, Julie Juliewatty Mohamed, Siti Koriah Zakaria, and Pao Ter Teo
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- 2022
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36. Cover Picture: Advanced techniques for gene heterogeneity research: Single‐cell sequencing and on‐chip gene analysis systems (View 1/2022)
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Zaizai Dong, Yu Wang, Dedong Yin, Xinxin Hang, Lei Pu, Jianfu Zhang, Jia Geng, and Lingqian Chang
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- 2022
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37. Investigation of activated carbon made from Kelantan bamboo as an economical and effective adsorbent for wastewater treatment
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Danial Shamzari bin Hashim, Jeng Young Liew, Jia Geng Boon, Kooi Huat Ng, and Meng Sang Shum
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- 2022
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38. Development and characterization of nanoemulsion containing essential oil of Piper betle as the active ingredient via low energy emulsification method
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Nurul Akmar Che Zaudin, Nurul Syahida Sulaiman, Teo Chai Ting, Sitti Fatimah Mhd Ramle, Nor Hakimin Abdullah, and Boon Jia Geng
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- 2022
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39. Frasier Syndrome: A 15-Year-Old Phenotypically Female Adolescent Presenting with Delayed Puberty and Nephropathy
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Qing Shao, Xinglei Xie, Jia Geng, Xiaoling Yang, Wei Li, and Yuwei Zhang
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Pediatrics, Perinatology and Child Health - Abstract
Frasier syndrome (FS) is a rare inherited disorder characterized by gonadal dysgenesis and progressive nephropathy, resulting from mutations in the intron 9 splice donor site of the Wilms tumor 1 (WT1) gene. It is associated with male gonadal dysgenesis (female external genitalia with a 46 XY karyotype), and a high risk of gonadoblastoma during adolescence. Patients with FS present early in childhood with proteinuria that progressively worsens with a high likelihood of end-stage renal disease (ESRD). Herein, we report a 15-year-old female (karyotype 46, XY) patient characterized by delayed puberty and steroid-resistant nephrotic syndrome, in whom whole genome sequencing showed a mutation in intron 9 of the WT1 gene, c.1447 + 4 C>T. This is the first case of FS with delayed puberty as the first complaint with no previous renal symptoms. We consider delayed puberty as an important manifestation of FS and summarize the diagnostic process of delayed puberty in the female phenotype. For clinicians, delayed puberty is a common disorder in pediatrics but requires vigilance for some rare causes. Etiological screening and chromosome karyotype analysis are important for the early diagnosis of FS in patients with delayed puberty.
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- 2023
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40. Label-free high-precise nanopore detection of endopeptidase activity of anthrax lethal factor regulated by diverse conditions
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Minghan Li, Shanchuan Chen, Yunjiao Wang, Shaoxia Zhang, Dandan Song, Rong Tian, Jia Geng, and Liang Wang
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Electrochemistry ,Biomedical Engineering ,Biophysics ,General Medicine ,Biotechnology - Abstract
Endopeptidase activity of anthrax lethal factor (aLF) prevents the destroy of anthracis spore intracellularly by host macrophages, meanwhile disables the signaling pathways extracellularly that leads to host lethality. Hence, inhibitory of this activity is expected to be an alternative option to cure anthrax infection. Herein, we fabricated a nanopore platform via transmembrane pore construction in vitro, which allows precise mimics, monitoring of intercellular proteinic transport and enables the quantitative detection of aLF endopeptidase activity towards MAPKK signaling protein at single molecule level. Next, we inhibited the aLF activity via screening approaches of protein-metal ion acquisition and other condition controlment (proton/hydroxide strength, adapted temperature, ionizing irradiation), which were identified by nanopore electrokinetic study. Upon the results, we found that Ca
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- 2023
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41. Author response for 'Biological nanopores for sensing applications'
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null Ming Zhang, null Chen Chen, null Yanjing Zhang, and null Jia Geng
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- 2021
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42. Machine Learning for Structure Determination in Single-Particle Cryo-Electron Microscopy: A Systematic Review
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Jia-Geng Wu, Yang Yan, Dong-Xu Zhang, Bo-Wen Liu, Qing-Bing Zheng, Xiao-Liang Xie, Shi-Qi Liu, Sheng-Xiang Ge, Zeng-Guang Hou, and Ning-Shao Xia
- Subjects
Artificial Intelligence ,Computer Networks and Communications ,Software ,Computer Science Applications - Abstract
Recently, single-particle cryo-electron microscopy (cryo-EM) has become an indispensable method for determining macromolecular structures at high resolution to deeply explore the relevant molecular mechanism. Its recent breakthrough is mainly because of the rapid advances in hardware and image processing algorithms, especially machine learning. As an essential support of single-particle cryo-EM, machine learning has powered many aspects of structure determination and greatly promoted its development. In this article, we provide a systematic review of the applications of machine learning in this field. Our review begins with a brief introduction of single-particle cryo-EM, followed by the specific tasks and challenges of its image processing. Then, focusing on the workflow of structure determination, we describe relevant machine learning algorithms and applications at different steps, including particle picking, 2-D clustering, 3-D reconstruction, and other steps. As different tasks exhibit distinct characteristics, we introduce the evaluation metrics for each task and summarize their dynamics of technology development. Finally, we discuss the open issues and potential trends in this promising field.
- Published
- 2021
43. Automated prediction of the neoadjuvant chemotherapy response in osteosarcoma with deep learning and an MRI-based radiomics nomogram
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Jingyu Zhong, Chengxiu Zhang, Yangfan Hu, Jing Zhang, Yun Liu, Liping Si, Yue Xing, Defang Ding, Jia Geng, Qiong Jiao, Huizhen Zhang, Guang Yang, and Weiwu Yao
- Subjects
Nomograms ,Osteosarcoma ,Deep Learning ,Humans ,Radiology, Nuclear Medicine and imaging ,Bone Neoplasms ,General Medicine ,Magnetic Resonance Imaging ,Neoadjuvant Therapy ,Retrospective Studies - Abstract
To implement a pipeline to automatically segment the ROI and to use a nomogram integrating the MRI-based radiomics score and clinical variables to predict responses to neoadjuvant chemotherapy (NAC) in osteosarcoma patients.A total of 144 osteosarcoma patients treated with NAC were separated into training (n = 101) and test (n = 43) groups. After normalisation, ROIs for the preoperative MRI were segmented by a deep learning segmentation model trained with nnU-Net by using two independent manual segmentations as labels. Radiomics features were extracted using automatically segmented ROIs. Feature selection was performed in the training dataset by five-fold cross-validation. The clinical, radiomics, and clinical-radiomics models were built using multiple machine learning methods with the same training dataset and validated with the same test dataset. The segmentation model was evaluated by the Dice coefficient. AUC and decision curve analysis (DCA) were employed to illustrate the model performance and clinical utility.36/144 (25.0%) patients were pathological good responders (pGRs) to NAC, while 108/144 (75.0%) were non-pGRs. The segmentation model achieved a Dice coefficient of 0.869 on the test dataset. The clinical and radiomics models reached AUCs of 0.636 with a 95% confidence interval (CI) of 0.427-0.860 and 0.759 (95% CI, 0.589-0.937), respectively, in the test dataset. The clinical-radiomics nomogram demonstrated good discrimination, with an AUC of 0.793 (95% CI, 0.610-0.975), and accuracy of 79.1%. The DCA suggested the clinical utility of the nomogram.The automatic nomogram could be applied to aid radiologists in identifying pGRs to NAC.• The nnU-Net trained by manual labels enables the use of an automatic segmentation tool for ROI delineation of osteosarcoma. • A pipeline using automatic lesion segmentation and followed by a radiomics classifier could aid the evaluation of NAC response of osteosarcoma. • A predictive nomogram composed of clinical variables and MRI-based radiomics score provides support for individualised treatment planning.
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- 2021
44. A natural variation in Ribonuclease H-like gene underlies Rht8 to confer 'Green Revolution' trait in wheat
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Lingling Chai, Mingming Xin, Chaoqun Dong, Zhaoyan Chen, Huijie Zhai, Junhong Zhuang, Xuejiao Cheng, Naijiao Wang, Jia Geng, Xiaobo Wang, Ruolin Bian, Yingyin Yao, Weilong Guo, Zhaorong Hu, Huiru Peng, Guihua Bai, Qixin Sun, Zhenqi Su, Jie Liu, and Zhongfu Ni
- Subjects
Plant Breeding ,Ribonuclease H ,Plant Science ,Genes, Plant ,Molecular Biology ,Gibberellins ,Triticum - Abstract
Rht8 is a gibberellin-sensitive Reduced height (Rht) locus that has been widely used in crop wheat semi-dwarfing breeding. In this study, the authors reported the map-based cloning of Rht8 candidate gene, and confirmed that loss of Ribonuclease H-Like 1 (RNHL-D1) is responsible for Rht8 semi-dwarfing effect.
- Published
- 2021
45. [Effect and Mechanism of Treating Experimental Autoimmune Encephalomyelitis in Mice with Butylphthalide Combined with Bone Marrow Mesenchymal Stem Cells]
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Jia, Geng, Guo-Yi, Liu, Shu, Ma, Shan-Shan, Li, and Hong-Yu, Zhou
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Mice, Inbred C57BL ,Mice ,Phosphatidylinositol 3-Kinases ,Encephalomyelitis, Autoimmune, Experimental ,Animals ,Mesenchymal Stem Cells ,Benzofurans - Abstract
To explore the efficacy and mechanism of using 3-n-butylphthalide (NBP) in combination with bone marrow mesenchymal stem cells (BMSCs) in the treatment of experimental autoimmune encephalomyelitis (EAE) in mice.Myelin oligodendrocyte glycoprotein (MOG35-55) was used for the induction and establishment of the EAE model in C57BL/6 mice. The mice were randomly assigned to the EAE group, which received intraperitoneal injection of phosphate-buffered saline (PBS), the NBP-treated EAE group, or the NBP group, which received intraperitoneal injection of NBP, the BMSCs transplantion EAE group, or the BMSCs group, which received BMSCs injected into the lateral ventricle and intraperitoneal injection of PBS, and the BMSCs and NBP combination treatment EAE group, or the BMSCs+NBP group, which received BMSCs injected into the lateral ventricle and intraperitoneal injection of NBP. Each group had 10 mice, while ten normal mice were used as the blank control group receiving intraperitoneal injection of PBS. The neurological function scores were documented daily. The mice were sacrificed 22 days after EAE induction, and the demyelination state of of the spinal cords was observed through Luxol fast blue (LFB) staining. In addition, the levels of serum interleukin-6 (IL-6), IL-10, IL-17, IL-22 and transforming growth factor-β (TGF-β) were examined with ELISA. The levels of glial fibrillary acidic protein (GFAP), microtubule associated protein-2 (MAP-2) and myelin basic protein (MBP) in the brain were examined with immunofluorescence staining. Western blot was used to check the expressions of nuclear factor (NF)-κB pathway, phosphoinositide-3 kinase (PI3K)/protein kinase B (PKB or Akt) pathway, IL-17 and forkhead box P3 (Foxp3) in the spinal cords.The neurological function scores and average scores of each treatment group were significantly lower than those of the EAE group (The combined treatment of NBP and BMSCs can help alleviate the symptoms of EAE model mice, showing better efficacy than treatment with NBP or BMSCs alone. The mechanism is related to the inhibition of the NF-κB pathway to regulate Th17/Foxp3 ratio and the activation of the PI3K/Akt pathway to promote the neurogenic differentiation of BMSCs.
- Published
- 2021
46. Urban Expansion Was the Main Driving Force for the Decline in Ecosystem Services in Hainan Island during 1980–2015
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Jia Geng, Mingsheng Yuan, Shen Xu, Tingting Bai, Yang Xiao, Xiaopeng Li, and Dong Xu
- Subjects
Oxygen ,Soil ,Conservation of Natural Resources ,China ,Health, Toxicology and Mutagenesis ,Public Health, Environmental and Occupational Health ,Humans ,Water ,Hainan Island ,land use change ,ecosystem services ,spatiotemporal change ,driving forces ,Biodiversity ,Ecosystem - Abstract
Hainan Island is one of China’s most ecologically diverse areas. Human activities and climate change have recently influenced Hainan Island’s ecosystem services. Therefore, scientific methods are urgently needed to investigate the characteristics of these services’ spatial and temporal variations and their driving mechanisms for maintaining Hainan Island’s biodiversity and high-quality ecological conservation. Based on multivariate remote sensing and reanalysis data, this study analysed the spatial and temporal variations in water retention, soil conservation, carbon sequestration, and oxygen release services on Hainan Island during 1980–2015 using various ecosystem service models such as INVEST, CASA and RULSE. Then, we analysed different ecosystem service drivers using a random forest model. The results indicated that (1) from 1980 to 2015, the change characteristics of different ecosystem types (arable, forest, and grassland) decreased, and the proportion of decrease was 0.98%, 0.55% and 0.36%, respectively. Built-up and water increased significantly, and the proportion of increase reached 1.46% and 0.51%, respectively. (2) Hainan Island’s functions of water retention, soil conservation, carbon sequestration, and oxygen release services decreased from 23.31 billion m3, 2.89 billion t, 9.68 million t and 56.05 million t in 1980 to 23.15 billion m3, 2.79 billion t, 9.42 million t and 55.53 million t in 2015, respectively. The high value area was mainly distributed in Hainan Island’s central mountainous area, and the low value area was mainly distributed in the lower-elevation coastal area. (3) In the past 35 years, urban expansion has been the leading factor in the reduction of Hainan Island’s ecosystem service capacity. However, its central nature reserve and other forms of ecological protection have improved its ecosystem service capacity, which has alleviated the overall declining trend of its amount of ecosystem service functions. (4) The driving forces for the spatial distribution of Hainan Island’s ecosystem services were analysed using a random forest algorithm, which indicated that its spatial distribution was mainly driven by rainfall, soil moisture, actual evapotranspiration, maximum temperature, and minimum temperature. This study is expected to help planners develop effective environmental policies to accommodate the potential ecological risks associated with urban expansion during the construction of Hainan Island’s future free trade port while filling the gaps in existing studies.
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- 2022
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47. A multi-input based full envelope acceleration schedule design method for gas turbine engine based on multilayer perceptron network
- Author
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Kang Wang, Maojun Xu, Ming Li, Jia Geng, Jinxin Liu, and Zhiping Song
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Aerospace Engineering - Published
- 2022
- Full Text
- View/download PDF
48. Structural characterization of the Plasmodium falciparum lactate transporter PfFNT alone and in complex with antimalarial compound MMV007839 reveals its inhibition mechanism
- Author
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Chuangye Yan, Xin Jiang, Jianping Hu, Xi Peng, Hanwen Xu, Chen Wang, Yanxia Zhou, Huaichuan Duan, Dong Deng, Zhi-jun Jia, Jialu Li, Jia Geng, Nan Wang, Fei Liu, Qingjie Xiao, Weidan Yuan, Li Guo, and Angqi Zhu
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Lactate transport ,Plasmodium ,Formates ,Protozoan Proteins ,Physical Chemistry ,Medical Conditions ,Medicine and Health Sciences ,Electron Microscopy ,Antimalarial Agent ,Malaria, Falciparum ,Biology (General) ,media_common ,Protozoans ,Microscopy ,biology ,Physics ,General Neuroscience ,Malarial Parasites ,Eukaryota ,Chemistry ,Physical Sciences ,Efflux ,Protons ,General Agricultural and Biological Sciences ,Research Article ,Monocarboxylic Acid Transporters ,Drug ,QH301-705.5 ,media_common.quotation_subject ,Plasmodium falciparum ,Research and Analysis Methods ,General Biochemistry, Genetics and Molecular Biology ,Microbiology ,Antimalarials ,Structure-Activity Relationship ,Parasite Groups ,parasitic diseases ,Parasitic Diseases ,medicine ,Lactic Acid ,Nitrites ,Nuclear Physics ,Nucleons ,Chemical Bonding ,General Immunology and Microbiology ,Cryoelectron Microscopy ,Organisms ,Biology and Life Sciences ,Electron Cryo-Microscopy ,Hydrogen Bonding ,Transporter ,Tropical Diseases ,biology.organism_classification ,medicine.disease ,Parasitic Protozoans ,Malaria ,Parasitology ,Apicomplexa - Abstract
Plasmodium falciparum, the deadliest causal agent of malaria, caused more than half of the 229 million malaria cases worldwide in 2019. The emergence and spreading of frontline drug-resistant Plasmodium strains are challenging to overcome in the battle against malaria and raise urgent demands for novel antimalarial agents. The P. falciparum formate–nitrite transporter (PfFNT) is a potential drug target due to its housekeeping role in lactate efflux during the intraerythrocytic stage. Targeting PfFNT, MMV007839 was identified as a lead compound that kills parasites at submicromolar concentrations. Here, we present 2 cryogenic-electron microscopy (cryo-EM) structures of PfFNT, one with the protein in its apo form and one with it in complex with MMV007839, both at 2.3 Å resolution. Benefiting from the high-resolution structures, our study provides the molecular basis for both the lactate transport of PfFNT and the inhibition mechanism of MMV007839, which facilitates further antimalarial drug design., The malaria parasite’s lactate transporter, PfFNT, is a potential drug target due to its housekeeping role in lactate efflux during the red blood cell stage. Cryo-EM structures of PfFNT alone or in complex with the anti-malarial drug MMV007839 reveal the mechanism of lactate transport and drug inhibition.
- Published
- 2021
49. Fluorescence and visual immunoassay of HIV-1 p24 antigen in clinical samples via multiple selective recognitions of CdTe QDs
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Jin Huang, Zhuoyun Tang, Chuanmin Tao, Jia Geng, Binwu Ying, Zeliang Wei, Dongdong Li, Ke Huang, Yinhao Wei, Shixin Yan, and Piaopiao Chen
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Hepatitis B virus ,Immunoassay ,medicine.diagnostic_test ,Chemistry ,Hepatitis C virus ,HIV Core Protein p24 ,Immunofluorescence ,medicine.disease_cause ,Ascorbic acid ,Molecular biology ,Virus ,Fluorescence ,Analytical Chemistry ,Antigen ,medicine ,Cadmium Compounds ,HIV-1 ,Electrochemiluminescence ,Humans ,Tellurium - Abstract
Human immunodeficiency virus (HIV) infection inflicts significant economic and social burdens on many countries worldwide. Given the substantial morbidity and mortality from HIV infection, there is an urgent need for accurate and early detection of the virus. In this study, immunofluorescence and visual techniques are described that detect the HIV-1 p24 antigen, which relied on selective recognition of Ag+/Ag nanoparticles (Ag NPs) and Cu2+/Cu+ using cadmium telluride quantum dots (CdTe QDs). After the sandwich immunoreactions were accomplished, the alkaline phosphatase (ALP) hydrolyzed L-ascorbic acid 2-phosphate (AAP) to form ascorbic acid (AA) that further reduces Ag+ and Cu2+ to Ag NPs and Cu+, respectively. This method was highly sensitive and selective and could detect as low as 1 pg/mL of p24 antigen by naked eyes and had a good linearity in the concentration range 1–100 pg/mL. When using Ag+ and Cu2+ as media, the limit of detection (LOD) of the new method was 0.3 pg/mL and 0.2 pg/mL, respectively. Compared with clinical electrochemiluminescence immunoassay (ECLIA) results and clinical data, this method demonstrated good consistency for the quantification of HIV-1 p24 antigen in 34 clinical serum samples. In addition, this method could accurately distinguish HIV from other viruses and infections such as hepatitis B virus, systemic lupus erythematosus, hepatitis C virus, Epstein-Barr virus, cytomegalovirus, lipemia, and hemolysis. Therefore, our dual-mode analysis method may provide additional solutions to identify clinical HIV infection. An immunofluorescence and visualization dual-mode strategy for the detection of p24 antigen was constructed based on immune recognition reaction and a phenomenon that cadmium telluride quantum dots (CdTe QDs) can selectively recognize Ag+/Ag nanoparticles (Ag NPs) and Cu2+/Cu+.
- Published
- 2021
50. High-fidelity biosensing of dNTPs and nucleic acids by controllable subnanometer channel PaMscS
- Author
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Changjian Zhao, Kaiju Li, Xingyu Mou, Yibo Zhu, Chuan Chen, Ming Zhang, Yu Wang, Ke Zhou, Yingying Sheng, Hao Liu, Yunjin Bai, Xinqiong Li, Cuisong Zhou, Dong Deng, Jianping Wu, Hai-Chen Wu, Rui Bao, and Jia Geng
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Nanopores ,Nucleic Acids ,Electrochemistry ,Biomedical Engineering ,Biophysics ,Escherichia coli ,Nanotechnology ,General Medicine ,Biosensing Techniques ,Biotechnology - Abstract
Current tools for dNTP analysis mainly rely on expensive fluorescent labeling, mass spectrometry or electrochemistry. Single-molecule assay by protein nanopores with an internal diameter of ca. 1-3.6 nm provides a useful tool for dNTP sensing. However, the most commonly used protein nanopores require additional modifications to enable dNTP detection. In this study, the PaMscS channel (mechanosensitive channel of small conductance from Pseudomonas aeruginosa) embedded in the bilayer lipid membrane (BLM) of E. coli polar lipid extract was applied as a nanopore for single molecular sensing. Two mutants of PaMscS nanopores on the side portal region (PaMscS W130A and PaMscS K180R) were selected for direct dNTP or pyrophosphoric acid (PPi) detection without aptamer or protein modification. Notably, the PaMscS mutant pore can be adjusted by regulation of osmolarity differences, which is crucial for the optimal detection of specific molecules. In addition, we established a PaMscS-based diagnosis method for the rapid sensing of disease-associated nucleic acids by monitoring the consumption of dNTPs, with 86% specificity and 100% sensitivity among 22 clinical samples. This protein nanopore, without aptamer or modification, paves a new way for dNTPs, PPi direct sensing and nucleic acid detection with low cost but high versatility.
- Published
- 2021
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