18 results on '"Jacklyn Liu"'
Search Results
2. High prevalence of persistent smell loss and qualitative smell dysfunction during the coronavirus disease 2019 (COVID‐19) pandemic in the United States: Urgent need for clinical trials
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Matt Lechner, Jacklyn Liu, Nicholas Counsell, Carol H. Yan, Santdeep Paun, Nicholas Eynon‐Lewis, Liam Sutton, Samuel Jayaraj, Rachel L. Batterham, Claire Hopkins, Carl Philpott, Valerie J. Lund, Matthew Hatter, Mohamed Abdelwahab, F. Christopher Holsinger, Robson Capasso, Jayakar V. Nayak, Peter H. Hwang, and Zara M. Patel
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Otorhinolaryngology ,Immunology and Allergy - Published
- 2022
3. DNA methylation-based classification of sinonasal tumors
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Philipp Jurmeister, Stefanie Glöß, Renée Roller, Maximilian Leitheiser, Simone Schmid, Liliana H. Mochmann, Emma Payá Capilla, Rebecca Fritz, Carsten Dittmayer, Corinna Friedrich, Anne Thieme, Philipp Keyl, Armin Jarosch, Simon Schallenberg, Hendrik Bläker, Inga Hoffmann, Claudia Vollbrecht, Annika Lehmann, Michael Hummel, Daniel Heim, Mohamed Haji, Patrick Harter, Benjamin Englert, Stephan Frank, Jürgen Hench, Werner Paulus, Martin Hasselblatt, Wolfgang Hartmann, Hildegard Dohmen, Ursula Keber, Paul Jank, Carsten Denkert, Christine Stadelmann, Felix Bremmer, Annika Richter, Annika Wefers, Julika Ribbat-Idel, Sven Perner, Christian Idel, Lorenzo Chiariotti, Rosa Della Monica, Alfredo Marinelli, Ulrich Schüller, Michael Bockmayr, Jacklyn Liu, Valerie J. Lund, Martin Forster, Matt Lechner, Sara L. Lorenzo-Guerra, Mario Hermsen, Pascal D. Johann, Abbas Agaimy, Philipp Seegerer, Arend Koch, Frank Heppner, Stefan M. Pfister, David T. W. Jones, Martin Sill, Andreas von Deimling, Matija Snuderl, Klaus-Robert Müller, Erna Forgó, Brooke E. Howitt, Philipp Mertins, Frederick Klauschen, David Capper, Jurmeister, Philipp, Glöß, Stefanie, Roller, Renée, Leitheiser, Maximilian, Schmid, Simone, Mochmann, Liliana H, Payá Capilla, Emma, Fritz, Rebecca, Dittmayer, Carsten, Friedrich, Corinna, Thieme, Anne, Keyl, Philipp, Jarosch, Armin, Schallenberg, Simon, Bläker, Hendrik, Hoffmann, Inga, Vollbrecht, Claudia, Lehmann, Annika, Hummel, Michael, Heim, Daniel, Haji, Mohamed, Harter, Patrick, Englert, Benjamin, Frank, Stephan, Hench, Jürgen, Paulus, Werner, Hasselblatt, Martin, Hartmann, Wolfgang, Dohmen, Hildegard, Keber, Ursula, Jank, Paul, Denkert, Carsten, Stadelmann, Christine, Bremmer, Felix, Richter, Annika, Wefers, Annika, Ribbat-Idel, Julika, Perner, Sven, Idel, Christian, Chiariotti, Lorenzo, Della Monica, Rosa, Marinelli, Alfredo, Schüller, Ulrich, Bockmayr, Michael, Liu, Jacklyn, Lund, Valerie J, Forster, Martin, Lechner, Matt, Lorenzo-Guerra, Sara L, Hermsen, Mario, Johann, Pascal D, Agaimy, Abba, Seegerer, Philipp, Koch, Arend, Heppner, Frank, Pfister, Stefan M, Jones, David T W, Sill, Martin, von Deimling, Andrea, Snuderl, Matija, Müller, Klaus-Robert, Forgó, Erna, Howitt, Brooke E, Mertins, Philipp, Klauschen, Frederick, and Capper, David
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Proteomics ,Multidisciplinary ,Carcinoma ,DNA Helicases ,Reproducibility of Results ,Nuclear Proteins ,General Physics and Astronomy ,General Chemistry ,DNA Methylation ,General Biochemistry, Genetics and Molecular Biology ,Humans ,ddc:610 ,Technology Platforms ,Transcription Factors - Abstract
The diagnosis of sinonasal tumors is challenging due to a heterogeneous spectrum of various differential diagnoses as well as poorly defined, disputed entities such as sinonasal undifferentiated carcinomas (SNUCs). In this study, we apply a machine learning algorithm based on DNA methylation patterns to classify sinonasal tumors with clinical-grade reliability. We further show that sinonasal tumors with SNUC morphology are not as undifferentiated as their current terminology suggests but rather reassigned to four distinct molecular classes defined by epigenetic, mutational and proteomic profiles. This includes two classes with neuroendocrine differentiation, characterized by IDH2 or SMARCA4/ARID1A mutations with an overall favorable clinical course, one class composed of highly aggressive SMARCB1-deficient carcinomas and another class with tumors that represent potentially previously misclassified adenoid cystic carcinomas. Our findings can aid in improving the diagnostic classification of sinonasal tumors and could help to change the current perception of SNUCs.
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- 2022
4. International multicenter study of clinical outcomes of sinonasal melanoma shows survival benefit for patients treated with immune checkpoint inhibitors and potential improvements to the current TNM staging system
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Matt Lechner, Yoko Takahashi, Mario Turri-Zanoni, Marco Ferrari, Jacklyn Liu, Nicholas Counsell, Davide Mattavelli, Vittorio Rampinelli, William Vermi, Davide Lombardi, Rami Saade, Ki Wan Park, Volker H. Schartinger, Alessandro Franchi, Carla Facco, Fausto Sessa, Simonetta Battocchio, Tim R. Fenton, Francis M. Vaz, Paul O'Flynn, David Howard, Paul Stimpson, Simon Wang, S. Alam Hannan, Samit Unadkat, Jonathan Hughes, Raghav Dwivedi, Cillian T. Forde, Premjit Randhawa, Simon Gane, Jonathan Joseph, Peter J. Andrews, Manas Dave, Jason C. Fleming, David Thomson, Tianyu Zhu, Andrew Teschendorff, Gary Royle, Christopher Steele, Joaquin E. Jimenez, Jan Laco, Eric W. Wang, Carl Snyderman, Peter D. Lacy, Robbie Woods, James P. O'Neill, Anirudh Saraswathula, Raman Preet Kaur, Tianna Zhao, Murugappan Ramanathan, Gary L. Gallia, Nyall R. London, Quynh-Thu Le, Robert B. West, Zara M. Patel, Jayakar V. Nayak, Peter H. Hwang, Mario Hermsen, Jose Llorente, Fabio Facchetti, Piero Nicolai, Paolo Bossi, Paolo Castelnuovo, Amrita Jay, Dawn Carnell, Martin D. Forster, Diana M. Bell, Valerie J. Lund, and Ehab Y. Hanna
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sinonasal mucosal melanoma ,TNM ,immunotherapy ,immune checkpoint blockade ,immune checkpoint inhibitors ipilimumab ,Neurology (clinical) - Abstract
Objectives Sinonasal mucosal melanoma (SNMM) is an extremely rare and challenging sinonasal malignancy with a poor prognosis. Standard treatment involves complete surgical resection, but the role of adjuvant therapy remains unclear. Crucially, our understanding of its clinical presentation, course, and optimal treatment remains limited, and few advancements in improving its management have been made in the recent past. Methods We conducted an international multicenter retrospective analysis of 505 SNMM cases from 11 institutions across the United States, United Kingdom, Ireland, and continental Europe. Data on clinical presentation, diagnosis, treatment, and clinical outcomes were assessed. Results One-, three-, and five-year recurrence-free and overall survival were 61.4, 30.6, and 22.0%, and 77.6, 49.2, and 38.3%, respectively. Compared with disease confined to the nasal cavity, sinus involvement confers significantly worse survival; based on this, further stratifying the T3 stage was highly prognostic (p Conclusions We present findings from the largest cohort of SNMM reported to date. We demonstrate the potential utility of further stratifying the T3 stage by sinus involvement and present promising data on the benefit of immune checkpoint inhibitors for recurrent, persistent, or metastatic disease with implications for future clinical trials in this field.
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- 2022
5. Course of symptoms for loss of sense of smell and taste over time in one thousand forty‐one healthcare workers during the Covid‐19 pandemic: Our experience
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Carl Philpott, Samuel Jayaraj, Claire Hopkins, Sandtdeep Paun, Rajesh Anmolsingh, Matthias Lechner, Valerie J Lund, Sadie Khwaja, B Nirma L Kumar, John Rocke, Jacklyn Liu, Ngan Hong Ta, Nicholas Counsell, and Nicholas Eynon-Lewis
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Adult ,Male ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,media_common.quotation_subject ,Health Personnel ,Olfaction ,03 medical and health sciences ,Olfaction Disorders ,Taste Disorders ,0302 clinical medicine ,Correspondence: Our Experience ,Surveys and Questionnaires ,Health care ,Pandemic ,medicine ,Humans ,030223 otorhinolaryngology ,Psychiatry ,Pandemics ,Mass screening ,media_common ,business.industry ,SARS-CoV-2 ,Public health ,Taste (sociology) ,COVID-19 ,Middle Aged ,United Kingdom ,Taste disorder ,Otorhinolaryngology ,030220 oncology & carcinogenesis ,Female ,business - Abstract
On April 21, 2020, the Centers for Disease Control and Prevention (CDC) and on May 5, 2020, the World Health Organisation added 'new loss of taste or smell' to their list of symptoms related to Covid-19, respectively. Public Health England (PHE) only included loss of smell and taste as official symptoms on May 20th . However, whether individual hospitals were including smell and taste disturbances in their initial work-up for Covid-19 diagnosis is unknown.
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- 2020
6. HPV-associated oropharyngeal cancer: epidemiology, molecular biology and clinical management
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Matt Lechner, Jacklyn Liu, Liam Masterson, Tim R. Fenton, Lechner, Matt [0000-0002-7123-0773], Fenton, Tim R [0000-0002-4737-8233], and Apollo - University of Cambridge Repository
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Molecular Epidemiology ,Radiotherapy ,Squamous Cell Carcinoma of Head and Neck ,Papillomavirus Infections ,Review Article ,Cancer prevention ,Oropharyngeal Neoplasms ,Cancer epidemiology ,Oncology ,Head and Neck Neoplasms ,Carcinoma, Squamous Cell ,Quality of Life ,Humans ,Chemotherapy ,Head and neck cancer - Abstract
Human papillomavirus (HPV)-positive (HPV+) oropharyngeal squamous cell carcinoma (OPSCC) has one of the most rapidly increasing incidences of any cancer in high-income countries. The most recent (8th) edition of the UICC/AJCC staging system separates HPV+ OPSCC from its HPV-negative (HPV−) counterpart to account for the improved prognosis seen in the former. Indeed, owing to its improved prognosis and greater prevalence in younger individuals, numerous ongoing trials are examining the potential for treatment de-intensification as a means to improve quality of life while maintaining acceptable survival outcomes. In addition, owing to the distinct biology of HPV+ OPSCCs, targeted therapies and immunotherapies have become an area of particular interest. Importantly, OPSCC is often detected at an advanced stage owing to a lack of symptoms in the early stages; therefore, a need exists to identify and validate possible diagnostic biomarkers to aid in earlier detection. In this Review, we provide a summary of the epidemiology, molecular biology and clinical management of HPV+ OPSCC in an effort to highlight important advances in the field. Ultimately, a need exists for improved understanding of the molecular basis and clinical course of this disease to guide efforts towards early detection and precision care, and to improve patient outcomes., The incidence of human papillomavirus (HPV)-positive oropharyngeal squamous cell carcinoma (OPSCC) is increasing rapidly in most developed countries. In this Review, the authors provide an overview of the epidemiology, molecular biology and treatment of HPV-positive OPSCC, including discussions of the role of treatment de-escalation and emerging novel therapies., Key points The incidence of human papillomavirus-associated oropharyngeal cancer (HPV+ OPSCC) is expected to continue to rise over the coming decades until the benefits of gender-neutral prophylactic HPV vaccination begin to become manifest.The incidence of HPV+ OPSCC appears to be highest in high-income countries, although more epidemiological data are needed from low- and middle-income countries, in which HPV vaccination coverage remains low.The substantially better prognosis of patients with HPV+ OPSCC compared to those with HPV– OPSCC has been recognized in the American Joint Committee on Cancer TNM8 staging guidelines, which recommend stratification by HPV status to improve staging.The molecular biology and genomic features of HPV+ OPSCC are similar to those of other HPV-associated malignancies, with HPV oncogenes (E6 and E7) acting as key drivers of pathogenesis.Treatment de-intensification is being pursued in clinical trials, although identifying the ~15% of patients with HPV+ OPSCC who have recurrent disease, and who therefore require more intensive treatment, remains a key challenge.
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- 2022
7. Reply to 'HPV-associated oropharyngeal cancer - discussion points'
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Matt Lechner, Jacklyn Liu, Liam Masterson, and Tim R. Fenton
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Oropharyngeal Neoplasms ,Oncology ,Papillomavirus Infections ,Humans - Published
- 2022
8. Multicenter Analysis of Clinical Outcomes of Sinonasal Mucosal Melanoma
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Matt Lechner, Yoko Takahashi, Mario Turri-Zanoni, Marco Ferrari, Jacklyn Liu, Nicholas Counsell, Davide Mattavelli, Vittorio Rampinelli, Davide Lombardi, Rami Saade, Ki Wan Park, Volker H. Schartinger, Alessandro Franchi, Roberta Maragliano, Simonetta Battocchio, Oscar Emanuel, Tim Fenton, Francis M. Vaz, Paul O'Flynn, David Howard, Paul Stimpson, Simon Wang, S. Alam Hannan, Samit Unadkat, Jonathan Hughes, Raghav Dwivedi, Cillian T. Forde, Premjit Randhawa, Simon Gane, Jonathan Joseph, Peter J. Andrews, Tianyu Zhu, Andrew Teschendorff, Gary Royle, Helen Bewicke-Copley, Christopher Steele, Luke Williams, Joaquin E. Jimenez-Garcia, Eric W. Wang, Carl Snyderman, Peter Lacy, Robbie Woods, James P. O'Neill, Quynh-Thu Le, Robert B. West, Zara M. Patel, Jayakar Nayak, Peter H. Hwang, Mario Hermsen, Jose Llorente, Fabio Facchetti, Piero Nicolai, Paolo Bossi, Paolo Castelnuovo, Amrita Jay, Dawn Carnell, Martin D. Forster, Diana M. Bell, Valerie J. Lund, and Ehab Y. Hanna
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- 2022
9. Clinical outcomes, Kadish-INSICA staging and therapeutic targeting of somatostatin receptor 2 in olfactory neuroblastoma
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Matt Lechner, Yoko Takahashi, Mario Turri-Zanoni, Jacklyn Liu, Nicholas Counsell, Mario Hermsen, Raman Preet Kaur, Tianna Zhao, Murugappan Ramanathan, Volker H. Schartinger, Oscar Emanuel, Sam Helman, Jordan Varghese, Jozsef Dudas, Herbert Riechelmann, Susanne Sprung, Johannes Haybaeck, David Howard, Nils Wolfgang Engel, Sarah Stewart, Laura Brooks, Jessica C. Pickles, Thomas S. Jacques, Tim R. Fenton, Luke Williams, Francis M. Vaz, Paul O'Flynn, Paul Stimpson, Simon Wang, S. Alam Hannan, Samit Unadkat, Jonathan Hughes, Raghav Dwivedi, Cillian T. Forde, Premjit Randhawa, Simon Gane, Jonathan Joseph, Peter J. Andrews, Gary Royle, Alessandro Franchi, Roberta Maragliano, Simonetta Battocchio, Helen Bewicke-Copley, Christodoulos Pipinikas, Amy Webster, Chrissie Thirlwell, Debbie Ho, Andrew Teschendorff, Tianyu Zhu, Christopher D. Steele, Nischalan Pillay, Bart Vanhaesebroeck, Ahmed Mohyeldin, Juan Fernandez-Miranda, Ki Wan Park, Quynh-Thu Le, Robert B. West, Rami Saade, R. Peter Manes, Sacit Bulent Omay, Eugenia M. Vining, Benjamin L. Judson, Wendell G. Yarbrough, Maddalena Sansovini, Nicolini Silvia, Ilaria Grassi, Alberto Bongiovanni, David Capper, Ulrich Schüller, Selvam Thavaraj, Ann Sandison, Pavol Surda, Claire Hopkins, Marco Ferrari, Davide Mattavelli, Vittorio Rampinelli, Fabio Facchetti, Piero Nicolai, Paolo Bossi, Oswaldo A. Henriquez, Kelly Magliocca, C. Arturo Solares, Sarah K. Wise, Jose L. Llorente, Zara M. Patel, Jayakar V. Nayak, Peter H. Hwang, Peter D. Lacy, Robbie Woods, James P. O'Neill, Amrita Jay, Dawn Carnell, Martin D. Forster, Masaru Ishii, Nyall R. London, Diana M. Bell, Gary L. Gallia, Paolo Castelnuovo, Stefano Severi, Valerie J. Lund, and Ehab Y. Hanna
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Radioisotopes ,Cancer Research ,Radiotherapy ,Nose Neoplasms ,Esthesioneuroblastoma, Olfactory ,Esthesioneuroblastoma ,Prognosis ,Article ,Neuroblastoma ,Oncology ,Adjuvant ,Diagnostic imaging ,Human ,Olfactory ,Receptors ,Somatostatin ,SSTR2 protein ,Positron-Emission Tomography ,Humans ,Receptors, Somatostatin ,Nasal Cavity ,Radionuclide Imaging ,Retrospective Studies - Abstract
Introduction: olfactory neuroblastoma (ONB) is a rare cancer of the sinonasal region. We provide a comprehensive analysis of this malignancy with molecular and clinical trial data on a subset of our cohort to report on the potential efficacy of somatostatin receptor 2 (SSTR2)-targeting imaging and therapy.Methods: we conducted a retrospective analysis of 404 primary, locally recurrent, and metastatic olfactory neuroblastoma (ONB) patients from 12 institutions in the United States of America, United Kingdom and Europe. Clinicopathological characteristics and treatment approach were evaluated. SSTR2 expression, SSTR2-targeted imaging and the efficacy of peptide receptor radionuclide therapy [PRRT](177Lu-DOTATATE) were reported in a subset of our cohort (LUTHREE trial; NCT03454763).Results: dural infiltration at presentation was a significant predictor of overall survival (OS) and disease-free survival (DFS) in primary cases (n = 278). Kadish-Morita staging and Dulguerov T-stage both had limitations regarding their prognostic value. Multivariable survival analysis demonstrated improved outcomes with lower stage and receipt of adjuvant radiotherapy. Prophylactic neck irradiation significantly reduces the rate of nodal recurrence. 82.4% of the cohort were positive for SSTR2; treatment of three metastatic cases with SSTR2-targeted peptide-radionuclide receptor therapy (PRRT) in the LUTHREE trial was well-tolerated and resulted in stable disease (SD).Conclusions: this study presents pertinent clinical data from the largest dataset, to date, on ONB. We identify key prognostic markers and integrate these into an updated staging system, highlight the importance of adjuvant radiotherapy across all disease stages, the utility of prophylactic neck irradiation and the potential efficacy of targeting SSTR2 to manage disease.
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- 2022
10. SSTR2 in Nasopharyngeal Carcinoma: Relationship with Latent EBV Infection and Potential as a Therapeutic Target
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Bart Vanhaesebroeck, Herbert Riechelmann, Guido Wollmann, Johannes Haybaeck, Marc L Ooft, Volker Hans Schartinger, Jacklyn Liu, Valerie J. Lund, Wen Long Nei, Liam Masterson, Stefan M. Willems, David Howard, Udo Oppermann, Gary Royle, Kwok Wai Lo, Matt Lechner, Oscar Emanuel, Melvin L.K. Chua, Chi Man Tsang, Philippe Busson, Yuk Yu Chan, Institut Gustave Roussy (IGR), Signalisation, noyaux et innovations en cancérologie (UMR8126), and Université Paris-Sud - Paris 11 (UP11)-Institut Gustave Roussy (IGR)-Centre National de la Recherche Scientifique (CNRS)
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Cancer Research ,medicine.medical_treatment ,[SDV]Life Sciences [q-bio] ,global health ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Disease ,Review ,Malignancy ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,EBV ,medicine ,therapeutics ,Somatostatin receptor 2 ,therapeutics nasopharyngeal carcinoma (NPC) ,Survival rate ,RC254-282 ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,nasopharyngeal carcinoma (NPC) ,business.industry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,biomarkers ,imaging ,medicine.disease ,3. Good health ,Radiation therapy ,Oncology ,Nasopharyngeal carcinoma ,030220 oncology & carcinogenesis ,Cancer research ,Biomarker (medicine) ,somatostatin receptor 2 (SSTR) ,epidemiology ,business ,Carcinogenesis ,carcinogenesis - Abstract
Simple Summary Nasopharyngeal cancer (NPC) is a malignant epithelial tumor endemic to parts of Asia and associated with infection by the Epstein–Barr virus (EBV) in these regions. The cancer is often detected at a late stage which is associated with poor outcomes (63% 5-year survival). Advances for the management of this disease have remained largely stagnant and treatment relies primarily on radiotherapy and chemotherapy, as well as surgery when indicated. Nevertheless, our understanding of its underlying biology has grown rapidly in the past two decades, laying the foundation for the development of improved therapeutics which have the potential to improve outcomes. This review offers a comprehensive, up-to-date summary of this disease, with a focus on the role of somatostatin receptor 2 (SSTR2) in NPC and how this increased knowledge may lead to improved diagnosis and management of this disease. Abstract Nasopharyngeal carcinoma (NPC) is a malignant epithelial tumor, most commonly located in the pharyngeal recess and endemic to parts of Asia. It is often detected at a late stage which is associated with poor prognosis (5-year survival rate of 63%). Treatment for this malignancy relies predominantly on radiotherapy and/or systemic chemotherapy, which can be associated with significant morbidity and impaired quality of life. In endemic regions NPC is associated with infection by Epstein–Barr virus (EBV) which was shown to upregulate the somatostatin receptor 2 (SSTR2) cell surface receptor. With recent advances in molecular techniques allowing for an improved understanding of the molecular aetiology of this disease and its relation to SSTR2 expression, we provide a comprehensive and up-to-date overview of this disease and highlight the emergence of SSTR2 as a key tumor biomarker and promising target for imaging and therapy.
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- 2021
11. Implementation of a Referral Pathway and Peri-operative Checklist for Delivery of Surgical Tracheostomy Provision during the COVID-19 Pandemic
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Matt Lechner, Laurie R Springford, Elinor Warner, Priya Sethukumar, Paul Stimpson, J. Hadley, N. Bhatti, Jacklyn Liu, Deepak Chandrasekharan, David Melia, Tom Smith, John Peters, Nitesh Patel, Helen Drewery, Alastair Mulcahy, Rishi Bhandari, and Khalid Ghufoor
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Globally the SARS-CoV-2 pandemic has posed significant challenges in the delivery of clinical care, in part owing to the lack of an evidence base for treatment and formalised patient care pathways. Guidelines have been published on the technical protocol for surgical tracheostomy in SARS-CoV-2 patients [2], however it is important to also focus on the pre-operative referral process. In order to make assertions on whether tracheostomy may have aided weaning, it would be necessary to implement formal, standardised methods of patient selection and record variables that may allow eventual patient prognostication. With a view to address this issue we have established a COVID-19 tracheostomy referral pathway based on work by The British Laryngological Association (BLA) and multidisciplinary stakeholders at Barts Health NHS Trust (see online Appendix 1) [3].
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- 2021
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12. A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution
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Tianyu Zhu, Jacklyn Liu, Stephan Beck, Sun Pan, David Capper, Matt Lechner, Chrissie Thirlwell, Charles E. Breeze, and Andrew E. Teschendorff
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Epigenomics ,Neurons ,Epigenome ,Humans ,CpG Islands ,Cell Biology ,DNA Methylation ,Molecular Biology ,Biochemistry ,Biotechnology ,Epigenesis, Genetic ,Genome-Wide Association Study - Abstract
Bulk-tissue DNA methylomes represent an average over many different cell types, hampering our understanding of cell-type-specific contributions to disease development. As single-cell methylomics is not scalable to large cohorts of individuals, cost-effective computational solutions are needed, yet current methods are limited to tissues such as blood. Here we leverage the high-resolution nature of tissue-specific single-cell RNA-sequencing datasets to construct a DNA methylation atlas defined for 13 solid tissue types and 40 cell types. We comprehensively validate this atlas in independent bulk and single-nucleus DNA methylation datasets. We demonstrate that it correctly predicts the cell of origin of diverse cancer types and discovers new prognostic associations in olfactory neuroblastoma and stage 2 melanoma. In brain, the atlas predicts a neuronal origin for schizophrenia, with neuron-specific differential DNA methylation enriched for corresponding genome-wide association study risk loci. In summary, the DNA methylation atlas enables the decomposition of 13 different human tissue types at a high cellular resolution, paving the way for an improved interpretation of epigenetic data.
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- 2021
13. Risk factors and characteristics associated with persistent smell loss in coronavirus disease 2019 (COVID-19) patients
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Bita Shahrvini, Samuel Jayaraj, Jacklyn Liu, Divya P. Prajapati, Valerie J. Lund, Matt Lechner, Adam S. DeConde, Mena Said, Shanmukha Srinivas, and Carol H. Yan
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Male ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Anosmia ,Severity of Illness Index ,Post-Acute COVID-19 Syndrome ,Risk Factors ,COVID‐19 ,Severity of illness ,medicine ,Immunology and Allergy ,Humans ,Longitudinal Studies ,Prospective Studies ,business.industry ,SARS-CoV-2 ,COVID-19 ,Virology ,Smell ,Otorhinolaryngology ,persistent olfactory dysfunction ,BSIT ,Clinical Letter ,Smell loss ,Odorants ,Female ,medicine.symptom ,business - Published
- 2021
14. Anosmia and hyposmia in health-care workers with undiagnosed SARS-CoV-2 infection
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Nicholas Counsell, Nicholas Eynon-Lewis, Matt Lechner, Sam Jayaraj, Santdeep Paun, Jacklyn Liu, Carl Philpott, and Valerie J Lund
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Microbiology (medical) ,Pediatrics ,medicine.medical_specialty ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Anosmia ,Health Personnel ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,lcsh:QR1-502 ,Microbiology ,lcsh:Microbiology ,Olfaction Disorders ,Hyposmia ,Virology ,Correspondence ,Health care ,medicine ,Humans ,lcsh:R5-920 ,SARS-CoV-2 ,business.industry ,COVID-19 ,Infectious Diseases ,medicine.symptom ,lcsh:Medicine (General) ,business - Published
- 2020
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15. Loss of smell and taste: a new marker of COVID-19? Tracking reduced sense of smell during the coronavirus pandemic using search trends
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George Cherry, John Rocke, Michael Chu, B. Nirmal Kumar, Jacklyn Liu, Valerie J Lund, and Matt Lechner
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0301 basic medicine ,Microbiology (medical) ,Taste ,medicine.medical_specialty ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,030106 microbiology ,Pneumonia, Viral ,Anosmia ,Olfaction ,Audiology ,medicine.disease_cause ,Global Health ,olfaction Disorders ,Microbiology ,taste ,03 medical and health sciences ,Betacoronavirus ,0302 clinical medicine ,Risk Factors ,Virology ,Pandemic ,medicine ,Humans ,030212 general & internal medicine ,Pandemics ,aguesia ,Coronavirus ,Original Research ,Retrospective Studies ,Internet ,business.industry ,SARS-CoV-2 ,fungi ,COVID-19 ,respiratory system ,United States ,Smell ,Europe ,Infectious Diseases ,search Engine ,medicine.symptom ,business ,Ageusia ,Coronavirus Infections ,anosmia ,Brazil ,Research Article - Abstract
Objectives It has been demonstrated that reduction in smell and/or taste is the most predictive symptom in SARS-CoV-2/Covid-19 infection. We used Google Trends to analyze regional searches relating to loss of smell and taste across Italy, Spain, France, Brazil, and the United States of America and determined the association with reported Covid-19 cases. Methods In order to retrieve the data, we built a Python software program that provides access to Google Trends data via an application program interface. Daily COVID-19 case data for subregions of the five countries selected were retrieved from respective national health authorities. We sought to assess the association between raw search interest data and COVID-19 new daily cases per million for all regions individually. Results In total, we yielded 2188 sets of Google Trends data which included 548 time series of 4 anosmia and ageusia search concepts over the study period for 137 regions. These data indicated that differences in search interest for terms relating to anosmia and ageusia, between regions, is associated with geographical trends in new Covid-19 cases. Conclusions We feel that Google search trends relating to loss of smell can be utilized to identify potential Covid-19 outbreaks on a national and regional basis.
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- 2020
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16. Novel Biomarkers in Sinonasal Cancers: from Bench to Bedside
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Valerie J. Lund, Matt Lechner, and Jacklyn Liu
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0301 basic medicine ,Oncology ,Sinonasal neuroendocrine carcinoma (SNEC) ,Sinonasal adenocarcinoma ,medicine.medical_specialty ,Sinonasal squamous cell cancer ,Nose Neoplasms ,Esthesioneuroblastoma ,Brain cancer ,Metastasis ,Sinonasal cancer ,03 medical and health sciences ,Sinonasal undifferentiated carcinoma ,0302 clinical medicine ,Targeted therapies ,Olfactory neuroblastoma ,Internal medicine ,medicine ,Advanced disease ,Sinonasal undifferentiated carcinoma (SNUC) ,Biomarkers, Tumor ,Therapeutic targets ,Humans ,business.industry ,Induction chemotherapy ,Treatment options ,Sinonasal melanoma ,medicine.disease ,Bench to bedside ,Head and Neck Cancers (EY Hanna, Section Editor) ,030104 developmental biology ,030220 oncology & carcinogenesis ,business ,Biomarkers ,Paranasal Sinus Neoplasms - Abstract
Purpose of Review Sinonasal cancers are a heterogenous group of rare cancers for which histopathological diagnosis can be very challenging and treatment options are limited for advanced disease in particular. Here, we review the candidacy of novel diagnostic and prognostic biomarkers, and therapeutic targets for sinonasal cancers. Recent Findings Molecular multidimensional analyses of sinonasal cancers have been lagging behind other major cancers, but there are numerous publications describing the discovery of novel candidate biomarkers, e.g. the methylation classifier, originally developed for brain cancers, and gene expression panels for the prediction of response to induction chemotherapy in sinonasal undifferentiated carcinoma. The most promising biomarkers are summarized and discussed further with regard to their clinical applicability and future potential. Summary Many of the described novel biomarkers for sinonasal cancers will eventually overcome the pitfalls associated with the frequently non-specific immunohistological tests. With comprehensive, multidimensional molecular testing of these tumours in collaborative consortia projects, our better understanding of the molecular mechanisms of sinonasal cancers and their carcinogenesis will determine the most useful diagnostic and prognostic biomarkers, allow stringent multi-institutional validation and guide trials on targeted therapies.
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- 2020
17. Anosmia as a presenting symptom of SARS-CoV-2 infection in healthcare workers – A systematic review of the literature, case series, and recommendations for clinical assessment and management
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Deepak Chandrasekharan, Kiran Jumani, Matt Lechner, Carl Philpott, Valerie J Lund, Jacklyn Liu, Simon B. Gane, and Samuel Jayaraj
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medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Health Personnel ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pneumonia, Viral ,MEDLINE ,Anosmia ,Betacoronavirus ,Olfaction Disorders ,03 medical and health sciences ,0302 clinical medicine ,Health care ,Pandemic ,medicine ,Humans ,030223 otorhinolaryngology ,Intensive care medicine ,Pandemics ,Close contact ,Key workers ,SARS-CoV-2 ,business.industry ,COVID-19 ,General Medicine ,Otorhinolaryngology ,medicine.symptom ,Coronavirus Infections ,business - Abstract
BACKGROUND: Healthcare workers are at the forefront of the ongoing COVID-19 pandemic and are at high risk for both the contraction and subsequent spread of virus. Understanding the role of anosmia as an early symptom of infection may improve monitoring and management of SARS-CoV2 infection. METHODOLOGY: We conducted a systematic review of the literature of SARS-CoV2 infection/COVID-19 and anosmia to help inform management of anosmia in healthcare works. We report a case series of healthcare workers, who presented with a loss of sense of smell secondary to COVID-19 infection to demonstrate management principles. RT-PCR was used to confirm COVID-19 positivity and psychophysical testing of olfaction was performed using the British version of the University of Pennsylvania Smell Identification Test, UPSIT. RESULTS: The systematic literature search returned 31 articles eligible for inclusion in the study and informed our recommendations for clinical assessment and management. All three healthcare professionals who presented with loss of sense of smell subsequently tested positive for SARS-CoV-2. Psychophysical testing of olfaction using the UPSIT confirmed mild and moderate microsmia in two, respectively, and normosmia at day 17 in one. CONCLUSIONS: Olfactory (± gustatory) dysfunction is indicative of COVID-19 infection and thus has important implications in the context of healthcare workers, or key workers in general, who work in close contact with others if not recognised as suffering from COVID. This leads to a potentially higher likelihood of spreading the virus. In conjunction with our literature review these findings have helped with creating recommendations on the assessment and management of olfactory dysfunction during the ongoing COVID-19 pandemic, both for healthcare workers and patients.
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- 2020
18. Somatostatin receptor 2 expression in nasopharyngeal cancer is induced by Epstein Barr virus infection: impact on prognosis, imaging and therapy
- Author
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David Howard, Haitao Wang, Kelvin Siu Hoong Loke, Marc L Ooft, Martin Forster, Teresa Marafioti, Bing Tan, Yim Ling Yip, Christopher D. Steele, Liesa Marie Schreiber, I. Indrawati, Sai Wah Tsao, Jozsef Dudas, Ruilian Xu, Martin Philpott, Wayne Pearce, Quynh-Thu Le, Susanne Delecluse, Shuting Han, Feng Wu, Herbert Riechelmann, Nischalan Pillay, Cillian T. Forde, Guido Wollmann, Zhiqiang Cheng, Johannes Haybaeck, Rajeev Gupta, Jacklyn Liu, Volker Hans Schartinger, Joshua K. Tay, Wen Long Nei, Simon Wan, Mohd Afiq Mohd Slim, Wan He, Kerry A. Chester, Daniele Morelli, Joe Yeong, Susanne Sprung, Udo Oppermann, Matt Lechner, Stefan M. Willems, Amit Jain, Christopher G. Bell, Kwok Wai Lo, Yuk Yu Chan, Gary Royle, Henri Jacques Delecluse, Renske Fles, Graham Wells, Christian Uprimny, Liam Sutton, Chi Man Tsang, Philippe Busson, Christodoulos P. Pipinikas, Amrita Jay, Tim Meyer, Peter H. Hwang, Hongtao Jin, Julia Koller, Tim R. Fenton, Valerie J. Lund, Ka Fai To, Annika Krapp, Camelia Herdini, Liam Masterson, Christina Thirlwell, Melvin L.K. Chua, Grace Tin-Yun Chung, Robert B. West, Bart Vanhaesebroeck, Reshma Nibhani, Sagung Rai Indrasari, Institut Gustave Roussy (IGR), RS: GROW - R2 - Basic and Translational Cancer Biology, MUMC+: MA Keel Neus Oorheelkunde (9), KNO, Guided Treatment in Optimal Selected Cancer Patients (GUTS), and Damage and Repair in Cancer Development and Cancer Treatment (DARE)
- Subjects
0301 basic medicine ,Male ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,medicine.medical_treatment ,[SDV]Life Sciences [q-bio] ,General Physics and Astronomy ,Octreotide ,Targeted therapy ,Mice ,0302 clinical medicine ,Positron Emission Tomography Computed Tomography ,Somatostatin receptor 2 ,Molecular Targeted Therapy ,Receptors, Somatostatin ,Head and neck cancer ,Cancer ,Multidisciplinary ,Nasopharyngeal Carcinoma ,NF-kappa B ,3. Good health ,Gene Expression Regulation, Neoplastic ,030220 oncology & carcinogenesis ,Lymphatic Metastasis ,Host-Pathogen Interactions ,Female ,Signal Transduction ,CARCINOMA ,Science ,Mice, Nude ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Antineoplastic Agents ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Article ,Viral Matrix Proteins ,03 medical and health sciences ,Cell Line, Tumor ,otorhinolaryngologic diseases ,medicine ,Animals ,Humans ,Survival rate ,Epstein–Barr virus infection ,Survival analysis ,business.industry ,association ,Nasopharyngeal Neoplasms ,General Chemistry ,medicine.disease ,Survival Analysis ,Xenograft Model Antitumor Assays ,stomatognathic diseases ,030104 developmental biology ,Cancer research ,neuroendocrine tumors ,Neoplasm Recurrence, Local ,business - Abstract
Nasopharyngeal cancer (NPC), endemic in Southeast Asia, lacks effective diagnostic and therapeutic strategies. Even in high-income countries the 5-year survival rate for stage IV NPC is less than 40%. Here we report high somatostatin receptor 2 (SSTR2) expression in multiple clinical cohorts comprising 402 primary, locally recurrent and metastatic NPCs. We show that SSTR2 expression is induced by the Epstein–Barr virus (EBV) latent membrane protein 1 (LMP1) via the NF-κB pathway. Using cell-based and preclinical rodent models, we demonstrate the therapeutic potential of SSTR2 targeting using a cytotoxic drug conjugate, PEN-221, which is found to be superior to FDA-approved SSTR2-binding cytostatic agents. Furthermore, we reveal significant correlation of SSTR expression with increased rates of survival and report in vivo uptake of the SSTR2-binding 68Ga-DOTA-peptide radioconjugate in PET-CT scanning in a clinical trial of NPC patients (NCT03670342). These findings reveal a key role in EBV-associated NPC for SSTR2 in infection, imaging, targeted therapy and survival., Nasopharyngeal carcinoma (NPC) lacks effective diagnostic and therapeutic strategies, in particular at advanced stages. Here, the authors show that expression of the somatostatin receptor 2 is induced by Epstein-Barr virus in NPC and has a key role in the diagnosis, imaging, targeted therapies and prognosis of NPC.
- Published
- 2020
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