1. The 2008 update of the Aspergillus nidulans genome annotation: A community effort
- Author
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Wortman, Jennifer Russo, Gilsenan, Jane Mabey, Joardar, Vinita, Deegan, Jennifer, Clutterbuck, John, Andersen, Mikael R., Archer, David, Bencina, Mojca, Braus, Gerhard, Coutinho, Pedro, von Doehren, Hans, Doonan, John, Driessen, Arnold J. M., Durek, Pawel, Espeso, Eduardo, Fekete, Erzsebet, Flipphi, Michel, Garcia Estrada, Carlos, Geysens, Steven, Goldman, Gustavo, de Groot, Piet W. J., Hansen, Kim, Harris, Steven D., Heinekamp, Thorsten, Helmstaedt, Kerstin, Henrissat, Bernard, Hofmann, Gerald, Homan, Tim, Horio, Tetsuya, Horiuchi, Hiroyuki, James, Steve, Jones, Meriel, Karaffa, Levente, Karanyi, Zsolt, Kato, Masashi, Keller, Nancy, Kelly, Diane E., Kiel, Jan A. K. W., Kim, Jung-Mi, van der Klei, Ida J., Klis, Frans M., Kovalchuk, Andriy, Krasevec, Nada, Kubicek, Christian P., Liu, Bo, MacCabe, Andrew, Meyer, Vera, Mirabito, Pete, Miskei, Marton, Mos, Magdalena, Mullins, Jonathan, Nelson, David R., Nielsen, Jens, Oakley, Berl R., Osmani, Stephen A., Pakula, Tiina, Paszewski, Andrzej, Paulsen, Ian, Pilsyk, Sebastian, Pocsi, Istvan, Punt, Peter J., Ram, Arthur F. J., Ren, Qinghu, Robellet, Xavier, Robson, Geoff, Seiboth, Bernhard, van Solingen, Piet, Specht, Thomas, Sun, Jibin, Taheri-Talesh, Naimeh, Takeshita, Norio, Ussery, Dave, Vankuyk, Patricia A., Visser, Hans, de Vondervoort, Peter J. I. van, Walton, Jonathan, Xiang, Xin, Xiong, Yi, Zeng, An Ping, Brandt, Bernd W., Cornell, Michael J., van den Hondel, Cees A. M. J. J., Visser, Jacob, Oliver, Stephen G., Turner, Geoffrey, Kraševec, Nada, Kuyk, Patricia A. van, Döhren, D.H., van Seilboth, B, de Vries, R., Institut de génétique et microbiologie [Orsay] (IGM), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Instituto de Agroquimica y Tecnologia de Alimentos (IATA), Instituto de Agroquímica y Tecnología de Alimentos - Institute of Agrochemistry and Food Technology [Valencia] (IATA-CSIC), Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology, Molecular Cell Biology, Faculty of Science and Engineering, Host-Microbe Interactions, Man, Biomaterials and Microbes (MBM), Centre for World Food Studies, Bioinformatics, Bio Informatics (IBIVU), Integrative Bioinformatics, Molecular Biology and Microbial Food Safety (SILS, FNWI), and Mass Spectrometry of Biomacromolecules (SILS, FNWI)
- Subjects
GENE-CLUSTER ,PREDICTION ,Assembly ,Biológiai tudományok ,CADRE ,Genome ,Természettudományok ,CELL-WALL ,Genetics ,0303 health sciences ,Fungal protein ,biology ,MESH: Aspergillus nidulans ,MESH: Genomics ,Fungal community ,Genomics ,Genome project ,Fungal ,Aspergillus ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,MESH: Genome, Fungal ,Identification (biology) ,MESH: Fungal Proteins ,Genome, Fungal ,fungal community ,Annotation ,Genes, Fungal ,Computational biology ,Vertebrate and Genome Annotation Project ,SEQUENCE ,Microbiology ,Article ,Aspergillus nidulans ,Fungal Proteins ,03 medical and health sciences ,transcription factors ,Transcription factors ,BIOSYNTHESIS ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,A-FUMIGATUS ,genome ,030304 developmental biology ,IDENTIFICATION ,030306 microbiology ,DNA ,NIGER ,biology.organism_classification ,TRANSCRIPTIONAL ACTIVATOR ,Genes ,Aspergilli ,MESH: Genes, Fungal - Abstract
12 páginas, 2 tablas -- PAGS nros. S2-S13, et al, The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology, We acknowledge financial support by the European Commission under contract LSSG-CT-2005-018964
- Published
- 2009
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