44 results on '"Haas, Cordula"'
Search Results
2. Benefits and outcomes of a new multidisciplinary approach for the management and financing of sudden unexplained death cases in a forensic setting in Switzerland
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Neubauer, Jacqueline, Kissel, Christine K, Bolliger, Stephan A, Barbon, Daniela, Thali, Michael J, Kloiber, Daniel, Bode, Peter Karl, Kovacs, Boldizsar, Graf, Urs, Maspoli, Alessandro, Berger, Wolfgang, Saguner, Ardan M, Haas, Cordula, University of Zurich, and Haas, Cordula
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Forensics ,Sudden cardiac death ,Sudden unexplained death ,Cardiac diseases ,Postmortem molecular autopsy ,Cardiac counselling ,340 Law ,610 Medicine & health ,Pilot Projects ,10218 Institute of Legal Medicine ,Pathology and Forensic Medicine ,2734 Pathology and Forensic Medicine ,11124 Institute of Medical Molecular Genetics ,Death, Sudden, Cardiac ,Phenotype ,10049 Institute of Pathology and Molecular Pathology ,10076 Center for Integrative Human Physiology ,10209 Clinic for Cardiology ,Humans ,Autopsy ,Genetic Testing ,Law ,Switzerland - Abstract
Sudden cardiac death (SCD) is an important public health issue. In young persons aged between 1 and 40 years, most SCDs are caused by potentially inherited cardiac diseases, often not detectable during conventional medico-legal investigations and therefore termed as sudden unexplained deaths (SUD). In this study, we describe the implementation, feasibility and importance of a standardized procedure to investigate SUD cases within the forensic framework at the Zurich Institute of Forensic Medicine in Switzerland. This new approach involves a multidisciplinary collaboration including forensic autopsy, second pathology expert opinion, post-mortem molecular genetic testing, cardiac counselling of relatives, and a tentative financing. This procedure is in line with the published Swiss and European recommendations on the management of SCDs. During a two-year pilot project, 39 sudden and unexpected death cases were collected, whereof 10 deceased remained without any identifiable cause of death after medico-legal investigation and second expert evaluation. Molecular autopsy, including 393 genes involved in cardio-vascular and metabolic diseases, identified eight pathogenic or likely pathogenic genetic variants in five out of the 10 deceased (50%). Cardio-genetic follow-up investigations in the families of the 10 deceased revealed phenotype-positive relatives in four families and required specific therapies, including an implantable cardioverter defibrillator (ICD) for primary prevention. Multidisciplinary collaboration is crucial for an optimal management of sudden unexplained death cases, to identify additional relatives at risk, and to prevent other tragic deaths within a family., Forensic Science International, 334, ISSN:0379-0738, ISSN:1872-6283
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- 2022
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3. Comparative evaluation of the MAPlex, Precision ID Ancestry Panel, and VISAGE Basic Tool for biogeographical ancestry inference
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Resutik, Peter, Aeschbacher, Simon, Krützen, Michael, Kratzer, Adelgunde, Haas, Cordula, Phillips, Christopher, Arora, Natasha, and University of Zurich
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10127 Institute of Evolutionary Biology and Environmental Studies ,11294 Institute of Evolutionary Medicine ,Genetics ,570 Life sciences ,biology ,590 Animals (Zoology) ,10218 Institute of Legal Medicine ,Pathology and Forensic Medicine - Published
- 2023
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4. Source level interpretation of mixed biological stains using coding region SNPs
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Dørum, Guro, Bleka, Øyvind, Gill, Peter, Haas, Cordula, University of Zurich, and Dørum, Guro
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Forensic Genetics ,Source level propositions ,mRNA ,340 Law ,610 Medicine & health ,Body fluid identification ,DNA ,10218 Institute of Legal Medicine ,Likelihood ratio ,DNA Fingerprinting ,Polymorphism, Single Nucleotide ,Pathology and Forensic Medicine ,Body Fluids ,2734 Pathology and Forensic Medicine ,Pathology and Forensic Medicine Forensic Science ,1311 Genetics ,Genetics ,Body fluid mixtures ,Humans ,Coding region SNP (SNP) - Abstract
The association of body fluids/cell types and donors in mixed biological traces is an important, but challenging task required to evaluate the value of evidence given forensic propositions concerning the source of the DNA. The linking of a DNA profile with evidence from presumptive tests or RNA analysis is not straightforward. Coding region SNPs (cSNPs) are a novel type of evidential markers that are both cell type specific and individual specific. They thereby provide a direct link between a donor and a body fluid in mixed biological stains. In this proof-of-concept paper we consider the evaluation of cSNP profiles given source level propositions and explore the use of the open-source software EuroForMix to compute likelihood ratios. The discrimination power of the cSNPs for various body fluids is investigated with simulations. We provide case examples where the type of biological material is questioned and where cSNP profiles can be used to assign a donor to a body fluid, and discuss how the results can be reported in court.
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- 2022
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5. Forensische DNA-Methylierungsanalyse
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Naue, Jana, Pfeifer, Manuel, Augustin, Christa, Becker, Julia, Fleckhaus, Jan, Grabmüller, Melanie, Han, Yang, Heidorn, Frank, Hollaender, Olivia, Klein-Unseld, Rachel, Kulstein, Galina, Lichtenwald, Julia, Neubauer, Jacqueline, Suarez, Philippe, Haas, Cordula, Schneider, Peter M, Vennemann, Marielle, Böhme, Petra, and University of Zurich
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510 Mathematics ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine ,Pathology and Forensic Medicine - Published
- 2021
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6. Genetische Verwandtschaftsanalyse an den Mumien aus Riesa
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Haas, Cordula, Alterauge, Amelie, University of Zurich, Stadtmuseum Riesa, ., and Evangelisch-Lutherische Kirchgemeinde Riesa, .
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930 History of ancient world (to ca. 499) ,510 Mathematics ,940 History of Europe ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2021
7. Ongoing tissue changes in an experimentally mummified human leg
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Morozova, Irina, Öhrström, Lena M, Eppenberger, Patrick, Bode‐Lesniewska, Beata, Gascho, Dominic, Haas, Cordula, Akgül, Gülfirde, Neukamm, Judith, Röthlin, Kim A, Imhof, Alexander, Shved, Natallia, Papageorgopoulou, Christina, Rühli, Frank J, University of Zurich, and Öhrström, Lena M
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Histology ,Ecology ,Evolution ,340 Law ,610 Medicine & health ,2702 Anatomy ,10218 Institute of Legal Medicine ,2722 Histology ,510 Mathematics ,1105 Ecology, Evolution, Behavior and Systematics ,Behavior and Systematics ,11294 Institute of Evolutionary Medicine ,1305 Biotechnology ,Anatomy ,Biotechnology - Published
- 2020
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8. Functional implications of a rare variant in the sodium channel β1B subunit () in a 5-month-old male sudden infant death syndrome case
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Neubauer, Jacqueline, Rougier, Jean-Sébastien, Abriel, Hugues, and Haas, Cordula
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570 Life sciences ,biology ,610 Medicine & health - Published
- 2018
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9. 2,000 Year old β-thalassemia case in Sardinia suggests malaria was endemic by the Roman period
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Viganó, Claudia, Haas, Cordula, Rühli, Frank J, Bouwman, Abigail, University of Zurich, and Viganó, Claudia
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11294 Institute of Evolutionary Medicine ,340 Law ,3314 Anthropology ,610 Medicine & health ,2702 Anatomy ,10218 Institute of Legal Medicine - Published
- 2017
10. RNA/DNA co-analysis from human skin and contact traces – results of a sixth collaborative EDNAP exercise
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Haas, Cordula, Hanson, E, University of Zurich, and Haas, Cordula
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2734 Pathology and Forensic Medicine ,1311 Genetics ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2015
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11. mRNA profiling for body fluid identification
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Haas, Cordula, University of Zurich, and Haas, Cordula
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340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2014
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12. Erratum to: Post-mortem whole-exome sequencing (WES) with a focus on cardiac disease-associated genes in five young sudden unexplained death (SUD) cases
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Neubauer, Jacqueline, Haas, Cordula, Bartsch, Christine, Medeiros-Domingo, Argelia, Berger, Wolfgang, and University of Zurich
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2734 Pathology and Forensic Medicine ,11124 Institute of Medical Molecular Genetics ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2016
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13. Post-mortem whole-exome sequencing(WES) with a focus on cardiac disease-associated genes in five young sudden unexplained death(SUD) cases
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Neubauer, Jacqueline, Haas, Cordula, Bartsch, Christine, Medeiros-Domingo, Argelia, Berger, Wolfgang, University of Zurich, and Neubauer, Jacqueline
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2734 Pathology and Forensic Medicine ,Sudden unexplained death ,11124 Institute of Medical Molecular Genetics ,Molecular autopsy ,10076 Center for Integrative Human Physiology ,Cardiac diseases ,Whole ,340 Law ,610 Medicine & health ,10064 Neuroscience Center Zurich ,10218 Institute of Legal Medicine ,exome sequencing - Published
- 2016
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14. Body Fluid Identification Using mRNA Profiling
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Roeder, Amy D, Haas, Cordula, University of Zurich, and Goodwin, William
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1311 Genetics ,1312 Molecular Biology ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2016
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15. Dem Täter auf der Spur – Nachweis von Körpersekreten mittels mRNA-Profiling
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Haas, Cordula, Kratzer, Adelgunde, and University of Zurich
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sekretspezifische mRNA Expression ,tissue specific mRNA expression ,340 Law ,610 Medicine & health ,Nachweis von Körperflüssigkeiten ,2700 General Medicine ,DNA ,10218 Institute of Legal Medicine ,Forensik ,Profil ,biologische Spuren ,forensics ,identification of body fluids ,biological stains ,DNA profile - Published
- 2016
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16. Towards male individualization with rapidly mutating Y-chromosomal STRs
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Ballantyne, Kaye N, Ralf, Arwin, Aboukhalid, Rachid, Achakzai, Niaz M, Anjos, Maria J, Ayub, Qasim, Balažic, Jože, Ballantyne, Jack, Ballard, David J, Berger, Burkhard, Bobillo, Cecilia, Bouabdellah, Mehdi, Burri, Helen, Capal, Tomas, Caratti, Stefano, Cárdenas, Jorge, Cartault, François, Carvalho, Elizeu F, Carvalho, Monica, Cheng, Baowen, Coble, Michael D, Comas, David, Corach, Daniel, D'Amato, Maria E, Davison, Sean, de Knijff, Peter, De Ungria, Maria Corazon A, Decorte, Ronny, Dobosz, Tadeusz, Dupuy, Berit M, Elmrghni, Samir, Gliwiński, Mateusz, Gomes, Sara C, Grol, Laurens, Haas, Cordula, Hanson, Erin, Henke, Jürgen, Henke, Lotte, Herrera-Rodríguez, Fabiola, Hill, Carolyn R, Holmlund, Gunilla, Honda, Katsuya, Immel, Uta-Dorothee, Inokuchi, Shota, Jobling, Mark A, Kaddura, Mahmoud, Kim, Jong S, Kim, Soon H, Kim, Wook, King, Turi E, Klausriegler, Eva, Kling, Daniel, Kovačević, Lejla, Kovatsi, Leda, Krajewski, Paweł, Kravchenko, Sergey, Larmuseau, Maarten H D, Lee, Eun Young, Lessig, Ruediger, Livshits, Ludmila A, Marjanović, Damir, Minarik, Marek, Mizuno, Natsuko, Moreira, Helena, Morling, Niels, Mukherjee, Meeta, Munier, Patrick, Nagaraju, Javaregowda, Neuhuber, Franz, Nie, Shengjie, Nilasitsataporn, Premlaphat, Nishi, Takeki, Oh, Hye H, Olofsson, Jill, Onofri, Valerio, Palo, Jukka U, Pamjav, Horolma, Parson, Walther, Petlach, Michal, Phillips, Christopher, Ploski, Rafal, Prasad, Samayamantri P R, Primorac, Dragan, Purnomo, Gludhug A, Purps, Josephine, Rangel-Villalobos, Hector, Rębała, Krzysztof, Rerkamnuaychoke, Budsaba, Gonzalez, Danel Rey, Robino, Carlo, Roewer, Lutz, Rosa, Alexandra, Sajantila, Antti, Sala, Andrea, Salvador, Jazelyn M, Sanz, Paula, Schmitt, Cornelia, Sharma, Anil K, Silva, Dayse A, Shin, Kyoung-Jin, Sijen, Titia, Sirker, Miriam, Siváková, Daniela, Skaro, Vedrana, Solano-Matamoros, Carlos, Souto, Luis, Stenzl, Vlastimil, Sudoyo, Herawati, Court, Denise Syndercombe, Tagliabracci, Adriano, Taylor, Duncan, Tillmar, Andreas, Tsybovsky, Iosif S, Tyler-Smith, Chris, van der Gaag, Kristiaan J, Vanek, Daniel, Völgyi, Antónia, Ward, Denise, Willemse, Patricia, Yap, Eric P H, Yong, Rita Y Y, Pajnič, Irena Zupanič, and Kayser, Manfred
- Abstract
Relevant for various areas of human genetics, Y-chromosomal STRs (Y-STRs) are commonly used for testing close paternal relationships amongst individuals and populations, and for male lineage identification. However, even the widely used 17-loci Yfiler set cannot resolve individuals and populations completely. Here, 52 centers generated quality-controlled data of 13 rapidly-mutating (RM) Y-STRs in 14,644 related and unrelated males from 111 worldwide populations. Strikingly, >99% of the 12,272 unrelated males were completely individualized. Haplotype diversity was extremely high (global: 0.9999985, regional: 0.99919-0.9999988). Haplotype sharing between populations was almost absent except for six (0.05%) of the 12,156 haplotypes. Haplotype sharing within populations was generally rare (0.8% non-unique haplotypes), significantly lower in urban (0.9%) than rural (2.1%) and highest in endogamous groups (14.3%). AMOVA revealed 99.98% of variation within populations, 0.018% among populations within groups, and 0.002% among groups. Of the 2,372 newly and 156 previously typed male relative pairs, 29% were differentiated including 27% of the 2,378 fathers/son pairs. Relative to Yfiler, haplotype diversity was increased in 86% of the populations tested and overall male relative differentiation was raised by 23.5%. Our study demonstrates the value of RM Y-STRs in identifying and separating unrelated and related males and provides a reference database.
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- 2014
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17. Toward Male Individualization with Rapidly Mutating Y-Chromosomal Short Tandem Repeats
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Ballantyne, Kaye N, Ralf, Arwin, Burri, Helen, Haas, Cordula, and University of Zurich
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2716 Genetics (clinical) ,1311 Genetics ,Genetics ,340 Law ,610 Medicine & health ,Genetics(clinical) ,10218 Institute of Legal Medicine - Published
- 2014
18. Forensic interlaboratory evaluation of the ForFLUID kit for vaginal fluids identification
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Giampaoli, Saverio, Alessandrini, Federica, Berti, Andrea, Choi, Ajin, Crab, Roselien, De Vittori, Elisabetta, Egyed, Balazs, Haas, Cordula, Lee, Hwan Young, Korabecná, Marie, Noel, Fabrice, Podini, Daniele, Tagliabracci, Adriano, Valentini, Alessio, Romano Spica, Vincenzo, University of Zurich, and Romano Spica, Vincenzo
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2734 Pathology and Forensic Medicine ,340 Law ,610 Medicine & health ,3308 Law ,10218 Institute of Legal Medicine - Published
- 2014
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19. Collaborative EDNAP exercise on the IrisPlex system for DNA-based prediction of human eye colour
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Chaitanya, Lakshmi, Walsh, Susan, et al, Haas, Cordula, and University of Zurich
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2734 Pathology and Forensic Medicine ,1311 Genetics ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2014
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20. A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
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Purps, Josephine, Siegert, Sabine, et al, Wobst, Jana, Haas, Cordula, and University of Zurich
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2734 Pathology and Forensic Medicine ,1311 Genetics ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2014
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21. Molekulargenetische Abstammungsanalyse am Skelett des Jörg Jenatsch
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Shved, Natalia and Haas, Cordula
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- 2014
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22. A collaborative European exercise on mRNA-based body fluid/skin typing and interpretation of DNA and RNA results
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van den Berge, M, et al, Haas, Cordula, and University of Zurich
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2734 Pathology and Forensic Medicine ,1311 Genetics ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2014
23. mRNA profiling using a minimum of five mRNA markers per body fluid and a novel scoring method for body fluid identification
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Roeder, Amy D, Haas, Cordula, University of Zurich, and Roeder, Amy D
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2734 Pathology and Forensic Medicine ,340 Law ,610 Medicine & health ,10218 Institute of Legal Medicine - Published
- 2013
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24. Failure to induce anti-glomerular basement membrane glomerulonephritis in TNFα/β deficient mice
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Ryffel, Bernhard, Eugster, Hanspietro, Haas, Cordula, and Le Hir, Michel
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Tumor Necrosis Factor-alpha ,Kidney Glomerulus ,Enzyme-Linked Immunosorbent Assay ,Antigen-Antibody Complex ,Basement Membrane ,Up-Regulation ,Mice, Inbred C57BL ,Mice ,Proteinuria ,Glomerulonephritis ,Animals ,Immune Complex Diseases ,Female ,Cell Adhesion Molecules ,Research Article - Abstract
TNF is a key proinflammatory cytokine playing a central role in the expression of endothelial adhesion molecules required for the recruitment of inflammatory cells. Proliferative glomerulonephritis induced by anti-GBM antibody is characterized by the recruitment of inflammatory cells into the glomerulus and capillary damage followed by regeneration with crescent formation. The glomerular pathology may be due to TNF induction and we therefore tested this hypothesis in TNF alpha/beta deficient mice. Anti-GBM antibody administration in sensitised wild-type mice resulted in deposition of immune complexes and complement factor 3, followed by increased ICAM-1 and VCAM-1 expression and influx of polymorphonuclear leucocytes. Distinct proteinuria precedes proliferative glomerulonephritis with glomerular crescent formation, which is fully developed at 10 days. By contrast, no glomerulonephritis developed in TNF alpha/beta deficient mice. Comparable antibody complex deposits are found, but the upregulation of ICAM-1 and VCAM-1, the influx of inflammatory cells and the subsequent tissue damage is absent in TNF alpha/beta deficient mice. Therefore, we conclude that TNF plays a key role for the recruitment of inflammatory cells by preventing the upregulation of endothelial adhesion molecule and the subsequent development of proliferative glomerulonephritis.
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- 1998
25. The role of interferon-γ in glomerulonephritis: evidence from interferon-γ receptor-deficient mice
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Haas, Cordula
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MUS (ZOOLOGY) ,INTERFERON (IMMUNOLOGIE) ,ANIMAL MODELS IN MEDICINE ,GLOMERULONEPHRITIS (PATHOLOGY) ,GLOMERULONEPHRITIS (PATHOLOGIE) ,TIERISCHE MODELLE IN DER MEDIZIN ,MUS (ZOOLOGIE) ,INTERFERON (IMMUNOLOGY) ,Medical sciences, medicine - Published
- 1997
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26. Multidisciplinary Identification of the Controversial Freedom Fighter Jörg Jenatsch, Assassinated 1639 in Chur, Switzerland
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Haeusler, Martin, Janosa, Manuel, Kayser, Manfred, Walsh, Susan, Seiler, Roger, Haas, Cordula, Papageorgopoulou, Christina, Lösch, Sandra, Hossein Moghaddam Horri, Negahnaz, Villa, Igor Maria, and Ruehli, Frank
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550 Earth sciences & geology ,16. Peace & justice - Abstract
Jörg Jenatsch, a leading freedom fighter during the Thirty Year's War in Graubünden, Switzerland, was assassinated on carnival 1639. Jenatsch's controversial biography and the unclear circumstances of his death inspired the formation of various legends, novels and films. In 1959, a skeleton discovered in the cathedral of Chur with remains of wealthy baroque clothing was tentatively attributed to Jenatsch. Here, we reassess the skeleton based on a new exhumation. Our multidisciplinary analysis and the head injuries are consistent with reports of the eyewitnesses of the crime, demonstrating that Jenatsch was killed from behind with a semi-sharp implement, supposedly an axe, as well as by a blow with a broad-surfaced object. Moreover, our facial reconstruction closely matches an oil portrait of Jenatsch, and the HIrisPlex system applied to DNA-extracts from the femoral bone reveals brown eye and dark brown hair colour, which coincides well with the portrait, too. Finally, isotope analysis of the femoral bone and a molar support Jenatsch's high social status, luxury diet and a high mobility in the last decade of his life. This multidisciplinary approach thus reinforces personal identification and provides additional insight into the life of this important historic person beyond written resources.
27. Assessing time dependent changes in microbial composition of biological crime scene traces using microbial RNA markers
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Salzmann, Andrea P., Arora, Natasha, Russo, Giancarlo, Kreutzer, Susanne, Snipen, Lars, and Haas, Cordula
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Body fluids ,13. Climate action ,Microbial composition ,Time since deposition (TsD) ,Transcriptome analysis ,16. Peace & justice ,Forensics - Abstract
Current body fluid identification methods do not reveal any information about the time since deposition (TsD) of biological traces, even though determining the age of traces could be crucial for the investigative process. To determine the utility of microbial RNA markers for TsD estimation, we examined RNA sequencing data from five forensically relevant body fluids (blood, menstrual blood, saliva, semen, and vaginal secretion) over seven time points, ranging from fresh to 1.5 years. One set of samples was stored indoors while another was exposed to outdoor conditions. In outdoor samples, we observed a consistent compositional shift, occurring after 4 weeks: this shift was characterized by an overall increase in non-human eukaryotic RNA and an overall decrease in prokaryotic RNA. In depth analyses showed a high fraction of tree, grass and fungal signatures, which are characteristic for the environment the samples were exposed to. When examining the prokaryotic fraction in more detail, three bacterial phyla were found to exhibit the largest changes in abundance, namely Actinobacteria, Proteobacteria and Firmicutes. More detailed analyses at the order level were done using a Lasso regression analysis to find a predictive subset of bacterial taxa. We found 26 bacterial orders to be indicative of sample age. Indoor samples did not reveal such a clear compositional change at the domain level: eukaryotic and prokaryotic abundance remained relatively stable across the assessed time period. Nonetheless, a Lasso regression analysis identified 32 bacterial orders exhibiting clear changes over time, enabling the prediction of TsD. For both indoor and outdoor samples, a larger number (around 60%) of the bacterial orders identified as indicative of TsD are part of the Actinobacteria, Proteobacteria and Firmicutes. In summary, we found that the observed changes across time are not primarily due to changes associated with body fluid specific bacteria but mostly due to accumulation of bacteria from the environment. Orders of these environmental bacteria could be evaluated for TsD prediction, considering the location and environment of the crime scene. However, further studies are needed to verify these findings, determine the applicability across samples, replicates, donors, and other variables, and also to further assess the effect of different seasons and locations on the samples., Forensic Science International: Genetics, 53
28. Degradation of human mRNA transcripts over time as an indicator of the time since deposition (TsD) in biological crime scene traces
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Salzmann, Andrea P., Russo, Giancarlo, Kreutzer, Susanne, and Haas, Cordula
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Body fluids ,RNA degradation ,Time since deposition (TsD) ,Transcriptome analysis ,16. Peace & justice ,Forensics - Abstract
Knowledge about the age of a stain, also termed as time since deposition (TsD), would provide law-enforcing authorities with valuable information for the prosecution of criminal offenses. Yet, there is no reliable method for the inference / assessment of TsD available. The aim of this study was to gain further insight into the RNA degradation pattern of forensically relevant body fluids and to find candidate markers for TsD estimation. Blood, menstrual blood, saliva, semen and vaginal secretion samples were exposed to indoor (dark, room temperature) and outdoor (exposed to sun, wind, etc. but protected from rain) conditions for up to 1.5 years. Based on expression and degradation analyses, we were able to identify body fluid specific signatures and RNA degradation patterns. The indoor samples showed a marked drop in RNA integrity after 6 months, while the outdoor samples were difficult to interpret and therefore excluded for some of the analyses. Up to 4 weeks, indoor samples showed more stable and less degrading transcripts than outdoor samples. Stable transcripts tended to be significantly shorter than degrading ones or transcripts, which are neither degrading nor stable. We reinforced the body fluid specific and the housekeeping gene nature of previously reported markers. With an unbiased approach, we selected stable and degrading genes for each body fluid in the short term and assessed their integrity during extended storage. We identified several stable and degrading gene transcripts, which could be tested in a targeted assay to assess the TsD interval e.g. by analyzing the ratio of degrading vs stable transcripts. In conclusion, we were able to detect RNA degradation patterns in samples being aged up to 1.5 years and identified several candidate markers, which could be evaluated for TsD estimation., Forensic Science International: Genetics, 53
29. Functional characterization of a novel SCN5A variant associated with long QT syndrome and sudden cardiac death
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Neubauer, Jacqueline, Wang, Zizun, Rougier, Jean-Sébastien, Abriel, Hugues, Rieubland, Claudine, Bartholdi, Deborah, Haas, Cordula, and Medeiros-Domingo, Argelia
- Subjects
570 Life sciences ,biology ,610 Medicine & health ,3. Good health - Abstract
Sudden arrhythmic death syndrome (SADS) in young individuals is a devastating and tragic event often caused by an undiagnosed inherited cardiac disease. Although post-mortem genetic testing represents a promising tool to elucidate potential disease-causing mechanisms in such autopsy-negative death cases, a variant interpretation is still challenging, and functional consequences of identified sequence alterations often remain unclear. Recently, we have identified a novel heterozygous missense variant (N1774H) in the Nav1.5 channel-encoding gene SCN5A in a 19-year-old female SADS victim. The aim of this study was to perform a co-segregation analysis in family members of the index case and to evaluate the functional consequences of this SCN5A variant. Functional characterization of the SCN5A N1774H variant was performed using patch-clamp techniques in TsA-201 cell line transiently expressing either wild-type or variant Nav1.5 channels. Electrophysiological analyses revealed that variant Nav1.5 channels show a loss-of-function in the peak current densities, but an increased late current compared to the wild-type channels, which could lead to both, loss- and gain-of-function respectively. Furthermore, clinical assessment and genetic testing of the relatives of the index case showed that all N1774H mutation carriers have prolonged QT intervals. The identification of several genotype and phenotype positive family members and the functional implication of the SCN5A N1774H variant support the evidence of the in silico predicted pathogenicity of the here reported sequence alteration.
30. Post-mortem whole-exome sequencing (WES) with a focus on cardiac disease-associated genes in five young sudden unexplained death (SUD) cases
- Author
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Bartsch, Christine, Berger, Wolfgang, Medeiros Domingo, Argelia, Haas, Cordula, and Neubauer, Jaqueline
- Subjects
610 Medicine & health ,3. Good health - Abstract
Sudden death of healthy young adults in the absence of any medical reason is generally categorised as autopsy-negative sudden unexplained death (SUD). Approximately 30 % of all SUD cases can be explained by lethal sequence variants in cardiac genes causing disturbed ion channel functions (channelopathies) or minimal structural heart abnormalities (cardiomyopathies). The aim of this study was to perform whole-exome sequencing (WES) in five young SUD cases in order to identify potentially disease-causing mutations with a focus on 184 genes associated with cardiac diseases or sudden death. WES analysis enabled the identification of damaging-predicted cardiac sequence alterations in three out of five SUD cases. Two SUD victims carried disease-causing variants in long QT syndrome (LQTS)-associated genes (KCNH2, SCN5A). In a third case, WES identified variants in two genes involved in mitral valve prolapse and thoracic aortic aneurism (DCHS1, TGFβ2). The genome of a fourth case carried several minor variants involved in arrhythmia pointing to a multigene influence that might have contributed to sudden death. Our results confirm that post-mortem genetic testing in SUD cases in addition to the conventional autopsy can help to identify familial cardiac diseases and can contribute to the identification of genetic risk factors for sudden death.
31. Post-mortem whole-exome analysis in a large sudden infant death syndrome cohort with a focus on cardiovascular and metabolic genetic diseases
- Author
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Medeiros Domingo, Argelia, Neubauer, Jaqueline, Berger, Wolfgang, Russo, G, Bartsch, C, Lecca, MR, and Haas, Cordula
- Subjects
610 Medicine & health ,3. Good health - Abstract
Sudden infant death syndrome (SIDS) is described as the sudden and unexplained death of an apparently healthy infant younger than one year of age. Genetic studies indicate that up to 35% of SIDS cases might be explained by familial or genetic diseases such as cardiomyopathies, ion channelopathies or metabolic disorders that remained undetected during conventional forensic autopsy procedures. Post-mortem genetic testing by using massive parallel sequencing (MPS) approaches represents an efficient and rapid tool to further investigate unexplained death cases and might help to elucidate pathogenic genetic variants and mechanisms in cases without a conclusive cause of death. In this study, we performed whole-exome sequencing (WES) in 161 European SIDS infants with focus on 192 genes associated with cardiovascular and metabolic diseases. Potentially causative variants were detected in 20% of the SIDS cases. The majority of infants had variants with likely functional effects in genes associated with channelopathies (9%), followed by cardiomyopathies (7%) and metabolic diseases (1%). Although lethal arrhythmia represents the most plausible and likely cause of death, the majority of SIDS cases still remains elusive and might be explained by a multifactorial etiology, triggered by a combination of different genetic and environmental risk factors. As WES is not substantially more expensive than a targeted sequencing approach, it represents an unbiased screening of the exome, which could help to investigate different pathogenic mechanisms within the genetically heterogeneous SIDS cohort. Additionally, re-analysis of the datasets provides the basis to identify new candidate genes in sudden infant death
32. 19th century family saga re-told by DNA recovered from postcard stamps
- Author
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A. Kratzer, Cordula Haas, Andrea Sulzer, Christian Körner, University of Zurich, and Haas, Cordula
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2734 Pathology and Forensic Medicine ,chemistry.chemical_compound ,chemistry ,media_common.quotation_subject ,340 Law ,610 Medicine & health ,Art ,Ancient history ,10218 Institute of Legal Medicine ,Law ,DNA ,media_common ,Pathology and Forensic Medicine - Published
- 2022
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33. Degradation of human mRNA transcripts over time as an indicator of the time since deposition (TsD) in biological crime scene traces
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Cordula Haas, Susanne Kreutzer, Andrea Patrizia Salzmann, Giancarlo Russo, University of Zurich, and Haas, Cordula
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Forensic Genetics ,Genetic Markers ,Male ,0301 basic medicine ,Saliva ,Time Factors ,RNA Stability ,340 Law ,610 Medicine & health ,10071 Functional Genomics Center Zurich ,Biology ,Pathology and Forensic Medicine ,Transcriptome ,Andrology ,03 medical and health sciences ,0302 clinical medicine ,510 Mathematics ,1311 Genetics ,Semen ,Genetics ,Humans ,RNA, Messenger ,030216 legal & forensic medicine ,Gene ,Body fluid ,Messenger RNA ,Gene Expression Profiling ,RNA ,Forensics ,Body fluids ,Transcriptome analysis ,RNA degradation ,Time since deposition (TsD) ,16. Peace & justice ,10218 Institute of Legal Medicine ,Menstruation ,Housekeeping gene ,2734 Pathology and Forensic Medicine ,030104 developmental biology ,Cervix Mucus ,Degradation (geology) ,Female ,Crime ,Blood Chemical Analysis - Abstract
Knowledge about the age of a stain, also termed as time since deposition (TsD), would provide law-enforcing authorities with valuable information for the prosecution of criminal offenses. Yet, there is no reliable method for the inference / assessment of TsD available. The aim of this study was to gain further insight into the RNA degradation pattern of forensically relevant body fluids and to find candidate markers for TsD estimation. Blood, menstrual blood, saliva, semen and vaginal secretion samples were exposed to indoor (dark, room temperature) and outdoor (exposed to sun, wind, etc. but protected from rain) conditions for up to 1.5 years. Based on expression and degradation analyses, we were able to identify body fluid specific signatures and RNA degradation patterns. The indoor samples showed a marked drop in RNA integrity after 6 months, while the outdoor samples were difficult to interpret and therefore excluded for some of the analyses. Up to 4 weeks, indoor samples showed more stable and less degrading transcripts than outdoor samples. Stable transcripts tended to be significantly shorter than degrading ones or transcripts, which are neither degrading nor stable. We reinforced the body fluid specific and the housekeeping gene nature of previously reported markers. With an unbiased approach, we selected stable and degrading genes for each body fluid in the short term and assessed their integrity during extended storage. We identified several stable and degrading gene transcripts, which could be tested in a targeted assay to assess the TsD interval e.g. by analyzing the ratio of degrading vs stable transcripts. In conclusion, we were able to detect RNA degradation patterns in samples being aged up to 1.5 years and identified several candidate markers, which could be evaluated for TsD estimation. ISSN:1872-4973 ISSN:1878-0326
- Published
- 2021
34. Sampling touch DNA from human skin following skin‐to‐skin contact in mock assault scenarios — A comparison of nine collection methods
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Cordula Haas, P. Voegeli, Sabine Hess, Sonja Kummer, A. Kratzer, Guro Dørum, Venus Kallupurackal, University of Zurich, and Haas, Cordula
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Male ,Touch DNA ,Skin to skin ,Dentistry ,340 Law ,Human skin ,610 Medicine & health ,01 natural sciences ,Specimen Handling ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,510 Mathematics ,1311 Genetics ,Genetics ,Medicine ,Humans ,Sampling (medicine) ,030216 legal & forensic medicine ,Collection methods ,Skin ,business.industry ,010401 analytical chemistry ,social sciences ,DNA ,Female victim ,DNA Fingerprinting ,10218 Institute of Legal Medicine ,0104 chemical sciences ,2734 Pathology and Forensic Medicine ,STR Profile ,Touch ,Female ,Sample collection ,business ,Microsatellite Repeats - Abstract
Collection of touch DNA from an offender on the victim's skin can provide relevant evidence for investigations of criminal cases. Therefore, the choice of the optimal sample collection method is crucial. In this study, we investigated the recovery of STR profiles from touch DNA on human skin by comparing nine different collection methods: the dry and wet cotton swabs in three different movements, the double-swab (wet-dry) method, the wet and dry Copan FLOQSwabs™, and the Scene Safe FAST™ minitapes. Mock assault scenarios were conducted with a male offender grasping the forearms of a female victim. Samples were collected from the assaulted area of the victim's skin, and the recovery of the offender's STR profile was evaluated. Our results indicate that the different swabs and swabbing techniques did not have a distinct impact on the STR recovery; however, the lowest STR recovery was achieved with Scene Safe FAST™ minitapes. In addition, we compared the double-swab method to the single-swab method by analyzing the DNA quantity of the wet and dry swabs separately. We found on average 13.7% more offender DNA using the double-swab method, but this did not translate into higher STR recovery. Our findings indicate that several methods perform equally well when collecting touch DNA from human skin, although SceneSafe FAST™ minitapes seem to be the least adequate for this purpose.
- Published
- 2021
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35. Forensic transcriptome analysis using massively parallel sequencing
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Andrea Patrizia Salzmann, Erin K. Hanson, Cordula Haas, Jack Ballantyne, Jacqueline Neubauer, University of Zurich, and Haas, Cordula
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Forensic Genetics ,0301 basic medicine ,Aging ,Bodily Secretions ,Time Factors ,Whole Transcriptome Sequencing ,340 Law ,High resolution ,610 Medicine & health ,Computational biology ,Biology ,Polymorphism, Single Nucleotide ,Pathology and Forensic Medicine ,Transcriptome ,03 medical and health sciences ,510 Mathematics ,0302 clinical medicine ,1311 Genetics ,Exome Sequencing ,Genetics ,Humans ,030216 legal & forensic medicine ,Massive parallel sequencing ,Gene Expression Profiling ,High-Throughput Nucleotide Sequencing ,RNA ,Sequence Analysis, DNA ,10218 Institute of Legal Medicine ,Reverse transcriptase ,Body Fluids ,2734 Pathology and Forensic Medicine ,genomic DNA ,Death, Sudden, Cardiac ,030104 developmental biology ,Postmortem Changes ,Pcr method - Abstract
The application of transcriptome analyses in forensic genetics has experienced tremendous growth and development in the past decade. The earliest studies and main applications were body fluid and tissue identification, using targeted RNA transcripts and a reverse transcription endpoint PCR method. A number of markers have been identified for the forensically most relevant body fluids and tissues and the method has been successfully used in casework. The introduction of Massively Parallel Sequencing (MPS) opened up new perspectives and opportunities to advance the field. Contrary to genomic DNA where two copies of an autosomal DNA segment are present in a cell, abundant RNA species are expressed in high copy numbers. Even whole transcriptome sequencing (RNA-Seq) of forensically relevant body fluids and of postmortem material was shown to be possible. This review gives an overview on forensic transcriptome analyses and applications. The methods cover whole transcriptome as well as targeted MPS approaches. High resolution forensic transcriptome analyses using MPS are being applied to body fluid/ tissue identification, determination of the age of stains and the age of the donor, the estimation of the post-mortem interval and to post mortem death investigations.
- Published
- 2021
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36. Assessing time dependent changes in microbial composition of biological crime scene traces using microbial RNA markers
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Natasha Arora, Cordula Haas, Lars Snipen, Susanne Kreutzer, Giancarlo Russo, Andrea Patrizia Salzmann, University of Zurich, and Haas, Cordula
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0301 basic medicine ,Genetic Markers ,Male ,Time Factors ,Firmicutes ,340 Law ,Zoology ,610 Medicine & health ,10071 Functional Genomics Center Zurich ,Pathology and Forensic Medicine ,Actinobacteria ,03 medical and health sciences ,510 Mathematics ,0302 clinical medicine ,1311 Genetics ,Abundance (ecology) ,Semen ,Genetics ,Humans ,030216 legal & forensic medicine ,Bacterial phyla ,Saliva ,Body fluid ,biology ,Sequence Analysis, RNA ,RNA ,Environmental Exposure ,16. Peace & justice ,biology.organism_classification ,10218 Institute of Legal Medicine ,DNA Fingerprinting ,Forensics ,Transcriptome analysis ,Body fluids ,Microbial composition ,Time since deposition (TsD) ,Menstruation ,2734 Pathology and Forensic Medicine ,RNA, Bacterial ,030104 developmental biology ,Blood ,13. Climate action ,Cervix Mucus ,Female ,Crime ,Proteobacteria ,Bacteria ,Microsatellite Repeats - Abstract
Current body fluid identification methods do not reveal any information about the time since deposition (TsD) of biological traces, even though determining the age of traces could be crucial for the investigative process. To determine the utility of microbial RNA markers for TsD estimation, we examined RNA sequencing data from five forensically relevant body fluids (blood, menstrual blood, saliva, semen, and vaginal secretion) over seven time points, ranging from fresh to 1.5 years. One set of samples was stored indoors while another was exposed to outdoor conditions. In outdoor samples, we observed a consistent compositional shift, occurring after 4 weeks: this shift was characterized by an overall increase in non-human eukaryotic RNA and an overall decrease in prokaryotic RNA. In depth analyses showed a high fraction of tree, grass and fungal signatures, which are characteristic for the environment the samples were exposed to. When examining the prokaryotic fraction in more detail, three bacterial phyla were found to exhibit the largest changes in abundance, namely Actinobacteria, Proteobacteria and Firmicutes. More detailed analyses at the order level were done using a Lasso regression analysis to find a predictive subset of bacterial taxa. We found 26 bacterial orders to be indicative of sample age. Indoor samples did not reveal such a clear compositional change at the domain level: eukaryotic and prokaryotic abundance remained relatively stable across the assessed time period. Nonetheless, a Lasso regression analysis identified 32 bacterial orders exhibiting clear changes over time, enabling the prediction of TsD. For both indoor and outdoor samples, a larger number (around 60%) of the bacterial orders identified as indicative of TsD are part of the Actinobacteria, Proteobacteria and Firmicutes. In summary, we found that the observed changes across time are not primarily due to changes associated with body fluid specific bacteria but mostly due to accumulation of bacteria from the environment. Orders of these environmental bacteria could be evaluated for TsD prediction, considering the location and environment of the crime scene. However, further studies are needed to verify these findings, determine the applicability across samples, replicates, donors, and other variables, and also to further assess the effect of different seasons and locations on the samples. ISSN:1872-4973 ISSN:1878-0326
- Published
- 2021
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37. Beyond simple kinship and identification: aDNA analyses from a 17th-19th century crypt in Germany
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Mario Gysi, Sandra Lösch, Cordula Haas, Andrea Sulzer, Amelie Alterauge, University of Zurich, and Haas, Cordula
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0301 basic medicine ,930 History of ancient world (to ca. 499) ,940 History of Europe ,Famous Persons ,340 Law ,610 Medicine & health ,Pedigree chart ,History, 18th Century ,DNA, Mitochondrial ,Pathology and Forensic Medicine ,History, 17th Century ,03 medical and health sciences ,510 Mathematics ,0302 clinical medicine ,1311 Genetics ,Germany ,Genetics ,Kinship ,Humans ,030216 legal & forensic medicine ,DNA, Ancient ,Historical record ,Chromosomes, Human, Y ,History, 19th Century ,10218 Institute of Legal Medicine ,DNA Fingerprinting ,Genealogy ,Pedigree ,2734 Pathology and Forensic Medicine ,030104 developmental biology ,Ancient DNA ,Geography ,570 Life sciences ,biology ,Identification (biology) ,Microsatellite Repeats - Abstract
Ancient DNA (aDNA) analysis is a powerful tool in multidisciplinary research on human remains, potentially leading to kinship scenarios and historical identifications. In this study, we present a genetic investigation of three noble families from the 17th to 19th centuries AD entombed in burial crypts at the cloister church of Riesa (Germany). Tests were aimed at identifying anticipated and incidental genetic relationships in our sample and the implications thereof for the assumed identity of the deceased. A total of 17 individuals were investigated via morphological, radiographic and aDNA analysis, yielding complete and partial autosomal and Y-STR profiles and reliable mtDNA sequences. Biostatistics and lineage markers revealed the presence of first to third degree relationships within the cohort. The pedigrees of the families Hanisch/von Odeleben and von Welck were thereby successfully reproduced, while four previously unknown individuals could be linked to the von Felgenhauer family. However, limitations of biostatistical kinship analysis became evident when the kinship scenario went beyond simple relationships. A combined analysis with archaeological data and historical records resulted in (almost) unambiguous identification of 14 of the 17 individuals.
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- 2020
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38. Assigning forensic body fluids to donors in mixed body fluids by targeted RNA/DNA deep sequencing of coding region SNPs
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Cordula Haas, Jack Ballantyne, Guro Dørum, Sabrina Ingold, Erin K. Hanson, University of Zurich, and Haas, Cordula
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Forensic Genetics ,Male ,340 Law ,610 Medicine & health ,Single-nucleotide polymorphism ,Computational biology ,Biology ,Stain ,Polymorphism, Single Nucleotide ,Proof of Concept Study ,Deep sequencing ,Pathology and Forensic Medicine ,chemistry.chemical_compound ,510 Mathematics ,Coding region ,Humans ,RNA, Messenger ,Allele frequency ,Body fluid ,Sequence Analysis, RNA ,RNA ,High-Throughput Nucleotide Sequencing ,Sequence Analysis, DNA ,10218 Institute of Legal Medicine ,Body Fluids ,2734 Pathology and Forensic Medicine ,chemistry ,Female ,DNA - Abstract
Biological traces found at crime scenes are analysed not only to genetically identify the donor(s) but also to determine the composition of the stain. For some cases, it is essential to associate a body fluid with a donor. Especially in mixed body fluid stains, but also in body fluid stains that appear to be single-source, this may be of importance. Linking a DNA profile (sub-source level) with evidence from a presumptive test or mRNA analysis (source level) is not straightforward. Our results support that associating donors and body fluids by means of comparing mixture ratios in RNA and DNA is not recommended. We introduce a set of 35 coding region SNPs (cSNPs) in body fluid-specific mRNA transcripts that represent a direct link between the body fluids and their donors. The discrimination power of the cSNPs was estimated based on allele frequencies calculated from a population sample (n = 188), and we investigated the practical application of the cSNPs in different scenarios. The results demonstrate that more cSNPs are needed to improve the discrimination power. However, the findings are promising as we were able to associate donors with body fluids in mixtures of different body fluids as well as in stains where both donors have contributed the same body fluid, e.g. a blood-blood mixture. In addition, the cSNP assay can be used for body fluid identification. The results of this proof-of-concept study support the use of cSNPs to assign body fluids to the respective donors.
- Published
- 2019
39. Body fluid identification and assignment to donors using a targeted mRNA massively parallel sequencing approach - results of a second EUROFORGEN / EDNAP collaborative exercise
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F.-X. Laurent, Katherine Butler Gettings, Carolyn R. Steffen, Sabrina Ingold, Niels Morling, Guro Dørum, K.J. van der Gaag, M. van den Berge, V. Verdoliva, Cordula Haas, Andrea Berti, Walther Parson, Erin K. Hanson, Federica Giangasparo, Jack Ballantyne, Marie-Louise Kampmann, Catarina Xavier, David Ballard, Ayhan Ulus, University of Zurich, and Haas, Cordula
- Subjects
0301 basic medicine ,Forensic Genetics ,Genetic Markers ,Male ,340 Law ,Single-nucleotide polymorphism ,610 Medicine & health ,Computational biology ,Biology ,Polymorphism, Single Nucleotide ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,510 Mathematics ,1311 Genetics ,Semen ,Genetics ,Coding region ,Humans ,030216 legal & forensic medicine ,RNA, Messenger ,Saliva ,Skin ,Body fluid ,Messenger RNA ,Massive parallel sequencing ,Illumina miseq ,High-Throughput Nucleotide Sequencing ,Ion semiconductor sequencing ,10218 Institute of Legal Medicine ,Menstruation ,2734 Pathology and Forensic Medicine ,030104 developmental biology ,Blood ,Mrna profiling ,Cervix Mucus ,Female - Abstract
In a previous EUROFORGEN/EDNAP collaborative exercise, we tested two assays for targeted mRNA massively parallel sequencing for the identification of body fluids/tissues, optimized for the Illumina MiSeq/FGx and the Ion Torrent PGM/S5 platforms, respectively. The task of the second EUROFORGEN/EDNAP collaborative exercise was to analyze dried body fluid stains with two different multiplexes, the former Illumina 33plex mRNA panel for body fluid/tissue identification and a 35plex cSNP panel for assignment of body fluids/tissues to donors that was introduced in a proof-of-concept study recently. The coding region SNPs (cSNPs) are located within the body fluid specific mRNA transcripts and represent a direct link between the body fluid and the donor. We predicted the origin of the stains using a partial least squares discriminant analysis (PLS-DA) model, where most of the single source samples were correctly predicted. The mixed body fluid stains showed poorer results, however, at least one component was predicted correctly in most stains. The cSNP data demonstrated that coding region SNPs can give valuable information on linking body fluids/tissues with donors in mixed body fluid stains. However, due to the unfavorable performance of some cSNPs, the interpretation remains challenging. As a consequence, additional markers are needed to increase the discrimination power in each body fluid/tissue category.
- Published
- 2019
40. mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise
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Titia Sijen, Gavrilo Hadzic, Guro Dørum, Cornelius Courts, Andrea Patrizia Salzmann, Thorsten Hadrys, Annica Gosch, Malte Bamberg, Maximilian Neis, Peter M. Schneider, Peter Wiegand, Cordula Haas, Margreet van den Berge, University of Zurich, and Haas, Cordula
- Subjects
Forensic Genetics ,Genetic Markers ,0301 basic medicine ,Computer science ,340 Law ,610 Medicine & health ,Computational biology ,Polymerase Chain Reaction ,Pathology and Forensic Medicine ,03 medical and health sciences ,510 Mathematics ,0302 clinical medicine ,1311 Genetics ,Tissue Stains ,Semen ,Genetics ,Humans ,Crime scene ,RNA, Messenger ,030216 legal & forensic medicine ,Saliva ,Analysis method ,Skin ,Low input ,Electrophoresis, Capillary ,High-Throughput Nucleotide Sequencing ,DNA ,10218 Institute of Legal Medicine ,Menstruation ,2734 Pathology and Forensic Medicine ,030104 developmental biology ,DNA profiling ,Mrna profiling ,Rna profiling ,Cervix Mucus ,Laboratories ,High input ,Blood Chemical Analysis ,Microsatellite Repeats - Abstract
In recent years, forensic mRNA profiling has increasingly been used to identify the origin of human body fluids. By now, several laboratories have implemented mRNA profiling and also use it in criminal casework. In 2018 the FoRNAP (Forensic RNA Profiling) group was established among a number of these laboratories with the aim of sharing experiences, discussing optimization potential, identifying challenges and suggesting solutions with regards to mRNA profiling and casework. To compare mRNA profiling methods and results a collaborative exercise was organized within the FoRNAP group. Seven laboratories from four countries received 16 stains, comprising six pure body fluid / tissue stains and ten mock casework samples. The laboratories were asked to analyze the provided stains with their in-house method (PCR/CE or MPS) and markers of choice. Five laboratories used a DNA/RNA co-extraction strategy. Overall, up to 11 mRNA markers per body fluid were analyzed. We found that mRNA profiling using different extraction and analysis methods as well as different multiplexes can be applied to casework-like samples. In general, high input samples were typed with high accuracy by all laboratories, regardless of the method used. Irrespective of the analysis strategy, samples of low input or mixed stains were more challenging to analyze and interpret since, alike to DNA profiling, a higher number of markers dropped out and/or additional unexpected markers not consistent with the cell type in question were detected. It could be shown that a plethora of different but valid analysis and interpretation strategies exist and are successfully applied in the Forensic Genetics community. Nevertheless, efforts aiming at optimizing and harmonizing interpretation approaches in order to achieve a higher consistency between laboratories might be desirable in the future. The simultaneous extraction of DNA alongside RNA showed to be an effective approach to identify not only the body fluid present but also to identify the donor(s) of the stain. This allows investigators to gain valuable information about the origin of crime scene samples and the course of events in a crime case.
- Published
- 2021
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41. Predicting the origin of stains from whole miRNome massively parallel sequencing data
- Author
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Erin K. Hanson, Cordula Haas, Sabrina Ingold, Jack Ballantyne, Guro Dørum, Sirisha Aluri, Giancarlo Russo, Lars Snipen, University of Zurich, and Haas, Cordula
- Subjects
0301 basic medicine ,Genetic Markers ,Male ,Computational biology ,Biology ,Polymerase Chain Reaction ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,510 Mathematics ,1311 Genetics ,Semen ,Partial least squares regression ,Genetics ,Humans ,030216 legal & forensic medicine ,Least-Squares Analysis ,Saliva ,Vaginal secretion ,Menstrual blood ,Body fluid ,Massive parallel sequencing ,Sequence Analysis, RNA ,Discriminant Analysis ,High-Throughput Nucleotide Sequencing ,Linear discriminant analysis ,10218 Institute of Legal Medicine ,Menstruation ,2734 Pathology and Forensic Medicine ,MicroRNAs ,030104 developmental biology ,Blood Stains ,Cervix Mucus ,Female - Abstract
In this study, we have screened the six most relevant forensic body fluids / tissues, namely blood, semen, saliva, vaginal secretion, menstrual blood and skin, for miRNAs using a whole miRNome massively parallel sequencing approach. We applied partial least squares (PLS) and linear discriminant analysis (LDA) to predict body fluids based on the expression of the miRNA markers. We estimated the prediction accuracy for models including different subsets of miRNA markers to identify the minimum number of markers needed for sufficient prediction performance. For one selected model consisting of 9 miRNA markers we calculated their importance for prediction of each of the six different body fluid categories.
- Published
- 2018
42. Transcription and microbial profiling of body fluids using a massively parallel sequencing approach
- Author
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Cordula Haas, Sirisha Aluri, Andrea Patrizia Salzmann, Giancarlo Russo, University of Zurich, and Haas, Cordula
- Subjects
Male ,0301 basic medicine ,Saliva ,RNA Stability ,340 Law ,610 Medicine & health ,Microbial profiling ,Computational biology ,Biology ,Pathology and Forensic Medicine ,Transcriptome ,03 medical and health sciences ,510 Mathematics ,0302 clinical medicine ,1311 Genetics ,Semen ,Transcription (biology) ,Genetics ,Humans ,RNA, Messenger ,030216 legal & forensic medicine ,Massive parallel sequencing ,Sequence Analysis, RNA ,Gene Expression Profiling ,Microbiota ,High-Throughput Nucleotide Sequencing ,Rna degradation ,Ribosomal RNA ,10218 Institute of Legal Medicine ,Menstruation ,2734 Pathology and Forensic Medicine ,RNA, Bacterial ,030104 developmental biology ,Metagenomics ,Cervix Mucus ,Metagenome ,Female ,Blood Chemical Analysis - Abstract
Analysis of biological evidence typically begins with a preliminary screening for the presence of biological fluids, traditionally with enzymatic or immunologic tests and of late by RNA profiling. The goal of this study was to create a whole transcriptome protocol, to view potential degradation effects in forensically relevant body fluids. Total RNA from fresh and aged blood, menstrual blood, saliva, semen, skin and vaginal secretion was analyzed with a massively parallel sequencing method. Two RNA-Seq library protocols with and without rRNA depletion were tested and compared. The rRNA depletion step had a negative influence on the sequencing quality and on the downstream analyses. From the human and bacterial RNA sequences, source-specific signatures could be identified. Aged samples showed in general a higher level of RNA degradation and decreased bacterial diversity. In summary, we could show that transcriptional profiling and metagenome analysis are powerful tools to provide additional information about the trace evidence.
- Published
- 2019
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43. Y-chromosomal analysis identifies the skeletal remains of Swiss national hero Jörg Jenatsch (1596-1639)
- Author
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Sascha Willuweit, Cordula Haas, Lutz Roewer, Josephine Purps, Frank J Rühli, Christina Papageorgopoulou, Maria Geppert, Michael Krawczak, Natallia Shved, University of Zurich, and Haas, Cordula
- Subjects
Male ,10017 Institute of Anatomy ,340 Law ,610 Medicine & health ,Biology ,Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Haplogroup ,Pathology and Forensic Medicine ,History, 17th Century ,1311 Genetics ,Genetics ,HERO ,Humans ,DNA Primers ,Chromosomes, Human, Y ,Base Sequence ,Chromosomal analysis ,Jörg ,10218 Institute of Legal Medicine ,Genealogy ,Pedigree ,2734 Pathology and Forensic Medicine ,History, 16th Century ,11294 Institute of Evolutionary Medicine ,570 Life sciences ,biology ,Forensic Anthropology ,Switzerland - Abstract
Jorg Jenatsch was a Swiss defender of independence and a fighter for liberty in the 17th century. With the help of three living male members of the Jenatsch family, we successfully identified a skeleton exhumed from Chur cathedral as the remains of Jorg Jenatsch. Our conclusion was based upon complete Y-STR and Y-SNP profiles that could be generated by replicate analyses of a bone sample available to us. The skeleton and the three living family members carried the same Y-SNP haplogroup, but were discordant at three of 23 Y-STR loci. This notwithstanding, conservative biostatistical evaluation of the data suggests that the Chur skeleton is at least 20 times more likely than not to be Jorg Jenatsch.
- Published
- 2013
44. A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
- Author
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Thomas Capal, Marian M. de Pancorbo, Birgit Bayer, Sheila M.T. Angustia, Francesca Brisighelli, Andrea Piccinini, Lutz Roewer, Yali Xue, Aikaterini Kondili, Alexandra Ampati, Katja Anslinger, Mouayyad Al-Azem, Witold Pepinski, Harald Niederstätter, Jae Joseph Russell B. Rodriguez, Katja Drobnič, Denise Syndercombe Court, Jana Wobst, David Ballard, Danel Rey-González, Marina Nastainczyk-Wulf, Christopher Phillips, Magdalena Konarzewska, Evelyn K. Guevara, Jill K. Olofsson, Maria Eugenia D’Amato, Natsuko Mizuno, Ansar El Andari, Yiping Hou, G.M. Luque, Carolyn R. Hill, Antti Sajantila, Cordula Haas, Tobi Gail Smith, Christian Gehrig, Andreas O. Tillmar, Marilidia Piglionica, Anja E. Klann, M. Sirker, Jazelyn M. Salvador, Jukka U. Palo, Rita Y.Y. Yong, Antonio Alonso, Xinia Barrantes, Bruce Budowle, Helen Burri, Xianping Wang, Baowen Cheng, Paulina Wolańska-Nowak, Peter de Knijff, Renato Salazar, Thirsa Kraaijenbrink, Shenglan Chen, Susi Pelotti, Tatiana Lúcia Santos Nogueira, Mark A. Jobling, Iulia Skitsa, Issam Mansour, Jeanett Edelmann, Urs V. Borer, Stefania Lonero Baldassarra, Maria Corazon A. De Ungria, Di Zhou, William E. Frank, Jon H. Wetton, Begoña Martínez-Jarreta, Sheng-Ping Hu, Marion Nagy, Andrea Verzeletti, Rodrigo Soares de Moura Neto, Martin R. Whittle, Anna Jonkisz, Ryszard Pawłowski, Cristian Capelli, Yu Na Oh, Emila Jastrzebska, Helena Nilsson, Agnieszka Maciejewska, M. Kohl, Cristina Cano García, Miguel Marino, Michael D. Coble, Elizeu Fagundes de Carvalho, Gareth M. Gwynne, Michael Nothnagel, Chengtao Jiang, Tadeusz Dobosz, Gavrilo Hadzic, Burkhard Berger, Sascha Willuweit, Branka Grskovic, Katsuya Honda, Tanja Ilievska, Rüdiger Lessig, Zlatko Jakovski, Antonio Salas, Balázs Egyed, Laura Locarno, Christoph Koller, Helena Moreira, Sibylle Tschumi, Carolina Núñez, Luís Souto Miranda, Nicola Schlauderer, Patrícia Domingues, Yasuki Iwashima, Di Lu, V. Cortellini, Antónia Völgyi, Monica Abreu-Głowacka, Mariela Caputo, Maarten Larmuseau, Peter M. Schneider, Wafaa Takash Chamoun, Gerhard Bäßler, Pekka Saukko, Cíntia Alves, Lejla Kovacevic, Maria Vouropoulou, Walther Parson, Stefania Turrina, Chris Tyler-Smith, Lina Solis De Calvit, D.R. Sumita, Qasim Ayub, T. Wiest, Iris Lindner, Jorge Cárdenas, Kyoung Jin Shin, Daniel Corach, Claudio Ottoni, Carlo Robino, Sabine Siegert, Ivana Furač, Miriam Baeta Bafalluy, Uta Dorothee Immel, Domenico De Leo, Ronny Decorte, Sandra Furfuro, Niels Morling, Valerio Onofri, Adriano Tagliabracci, Rosane Silva, Beate Balitzki, Ulises Toscanini, Olga Rickards, Michael Krawczak, Sean Davison, Ulrike Schmidt, Wei Wei, Pablo Martín, Vincent Castella, Yan Li, P. Miniati, Rafał Płoski, Gusztáv Bárány, Vlastimil Stenzl, Shengjie Nie, Horolma Pamjav, Carey Davis, Josephine Purps, Lorna H. Santos, Damir Marjanović, Hjelt Institute (-2014), Forensic Medicine, PaleOmics Laboratory, Purps, Josephine, Siegert, Sabine, Willuweit, Sascha, Nagy, Marion, Alves, Cíntia, Salazar, Renato, Angustia, Sheila M.T., Santos, Lorna H., Anslinger, Katja, Bayer, Birgit, Ayub, Qasim, Wei, Wei, Xue, Yali, Tyler-Smith, Chri, Bafalluy, Miriam Baeta, Martínez-Jarreta, Begoña, Egyed, Balaz, Balitzki, Beate, Tschumi, Sibylle, Ballard, David, Court, Denise Syndercombe, Barrantes, Xinia, Bäßler, Gerhard, Wiest, Tina, Berger, Burkhard, Niederstätter, Harald, Parson, Walther, Davis, Carey, Budowle, Bruce, Burri, Helen, Borer, Ur, Koller, Christoph, Carvalho, Elizeu F., Domingues, Patricia M., Chamoun, Wafaa Takash, Coble, Michael D., Hill, Carolyn R., Corach, Daniel, Caputo, Mariela, D'Amato, Maria E., Davison, Sean, Decorte, Ronny, Larmuseau, Maarten H.D., Ottoni, Claudio, Rickards, Olga, Lu, Di, Jiang, Chengtao, Dobosz, Tadeusz, Jonkisz, Anna, Frank, William E., Furac, Ivana, Gehrig, Christian, Castella, Vincent, Grskovic, Branka, Haas, Cordula, Wobst, Jana, Hadzic, Gavrilo, Drobnic, Katja, Honda, Katsuya, Hou, Yiping, Zhou, Di, Li, Yan, Hu, Shengping, Chen, Shenglan, Immel, Uta-Dorothee, Lessig, Rüdiger, Jakovski, Zlatko, Ilievska, Tanja, Klann, Anja E., García, Cristina Cano, De Knijff, Peter, Kraaijenbrink, Thirsa, Kondili, Aikaterini, Miniati, Penelope, Vouropoulou, Maria, Kovacevic, Lejla, Marjanovic, Damir, Lindner, Iri, Mansour, Issam, Al-Azem, Mouayyad, Andari, Ansar El, Marino, Miguel, Furfuro, Sandra, Locarno, Laura, Martín, Pablo, Luque, Gracia M., Alonso, Antonio, Miranda, Luís Souto, Moreira, Helena, Mizuno, Natsuko, Iwashima, Yasuki, Neto, Rodrigo S. Moura, Nogueira, Tatiana L.S., Silva, Rosane, Nastainczyk-Wulf, Marina, Edelmann, Jeanett, Kohl, Michael, Nie, Shengjie, Wang, Xianping, Cheng, Baowen, Núñez, Carolina, Pancorbo, Marian Martínez De, Olofsson, Jill K., Morling, Niel, Onofri, Valerio, Tagliabracci, Adriano, Pamjav, Horolma, Volgyi, Antonia, Barany, Gusztav, Pawlowski, Ryszard, Maciejewska, Agnieszka, Pelotti, Susi, Pepinski, Witold, Abreu-Glowacka, Monica, Phillips, Christopher, Cárdenas, Jorge, Rey-Gonzalez, Danel, Salas, Antonio, Brisighelli, Francesca, Capelli, Cristian, Toscanini, Ulise, Piccinini, Andrea, Piglionica, Marilidia, Baldassarra, Stefania L., Ploski, Rafal, Konarzewska, Magdalena, Jastrzebska, Emila, Robino, Carlo, Sajantila, Antti, Palo, Jukka U., Guevara, Evelyn, Salvador, Jazelyn, Ungria, Maria Corazon De, Rodriguez, Jae Joseph Russell, Schmidt, Ulrike, Schlauderer, Nicola, Saukko, Pekka, Schneider, Peter M., Sirker, Miriam, Shin, Kyoung-Jin, Oh, Yu Na, Skitsa, Iulia, Ampati, Alexandra, Smith, Tobi-Gail, Calvit, Lina Solis De, Stenzl, Vlastimil, Capal, Thoma, Tillmar, Andrea, Nilsson, Helena, Turrina, Stefania, De Leo, Domenico, Verzeletti, Andrea, Cortellini, Venusia, Wetton, Jon H., Gwynne, Gareth M., Jobling, Mark A., Whittle, Martin R., Sumita, Denilce R., Wolańska-Nowak, Paulina, Yong, Rita Y.Y., Krawczak, Michael, Nothnagel, Michael, and Roewer, Lutz
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Forensic Genetics ,Population structure ,RECOMBINATION ,Forensic Genetic ,purl.org/becyt/ford/1 [https] ,AMOVA, Database, Discriminatory power, Gene diversity, Population structure ,Genética y Herencia ,0302 clinical medicine ,MARKERS ,Haplotype ,POPULATION ,Allele ,Genetics ,0303 health sciences ,education.field_of_study ,Medicine (all) ,Gene diversity ,319 Forensic science and other medical sciences ,16. Peace & justice ,Gene diversity, Discriminatory power, AMOVA, Population structure, Database ,Str loci ,Microsatellite Repeat ,AMOVA, Database, Discriminatory power, Gene diversity, Population structure, Genetics, Forensic Medicine ,ALLELE FREQUENCIES ,Discriminatory power ,CIENCIAS NATURALES Y EXACTAS ,Human ,AMOVA ,Population ,Settore BIO/08 - ANTROPOLOGIA ,Biology ,Settore BIO/08 ,SEQUENCE ,Article ,Pathology and Forensic Medicine ,EVENTS ,Ciencias Biológicas ,Database ,03 medical and health sciences ,Genetic ,Settore MED/43 - Medicina Legale ,Humans ,030216 legal & forensic medicine ,education ,purl.org/becyt/ford/1.6 [https] ,Allele frequency ,Alleles ,030304 developmental biology ,Chromosomes, Human, Y ,ta1184 ,DELETION ,Null (mathematics) ,AZFA REGION ,ta3121 ,Haplotypes ,3111 Biomedicine ,SYSTEM ,Microsatellite Repeats - Abstract
In a worldwide collaborative effort, 19,630 Y-chromosomes were sampled from 129 different populations in 51 countries. These chromosomes were typed for 23 short-tandem repeat (STR) loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385ab, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, GATAH4, DYS481, DYS533, DYS549, DYS570, DYS576, and DYS643) and using the PowerPlex Y23 System (PPY23, Promega Corporation, Madison, WI). Locus-specific allelic spectra of these markers were determined and a consistently high level of allelic diversity was observed. A considerable number of null, duplicate and off-ladder alleles were revealed. Standard single-locus and haplotype-based parameters were calculated and compared between subsets of Y-STR markers established for forensic casework. The PPY23 marker set provides substantially stronger discriminatory power than other available kits but at the same time reveals the same general patterns of population structure as other marker sets. A strong correlation was observed between the number of Y-STRs included in a marker set and some of the forensic parameters under study. Interestingly a weak but consistent trend toward smaller genetic distances resulting from larger numbers of markers became apparent. Fil: Corach, Daniel. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Servicio de Huellas Digitales Genéticas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Caputo, Mariela. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Servicio de Huellas Digitales Genéticas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Marino, Miguel Eduardo. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Laboratorio de Analisis de ADN; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Purps, Josephine. Charité-Universitätsmedizin; Alemania Fil: Siegert, Sabine. University of Cologne; Alemania Fil: Willuweit, Sascha. Charité-Universitätsmedizin; Alemania Fil: Nagy, Marion. Charité-Universitätsmedizin; Alemania Fil: Alves, Cíntia. Universidad de Porto; Portugal Fil: Salazar, Renato. Universidad de Porto; Portugal Fil: Angustia, Sheila M. T.. Philippine National Police Crime Laboratory; Filipinas Fil: Santos, Lorna H.. Philippine National Police Crime Laboratory; Filipinas Fil: Anslinger, Katja. Universitat Genzentrum Der Ludwing-maximilians; Alemania Fil: Bayer, Birgit. Universitat Genzentrum Der Ludwing-maximilians; Alemania Fil: Ayub, Qasim. The Wellcome Trust Sanger Institute; Reino Unido Fil: Wei, Wei. The Wellcome Trust Sanger Institute; Reino Unido Fil: Xue, Yali. The Wellcome Trust Sanger Institute; Reino Unido Fil: Tyler Smith, Chris. The Wellcome Trust Sanger Institute; Reino Unido Fil: Baeta Bafalluy, Miriam. Universidad de Zaragoza; España Fil: Martínez Jarreta, Begoña. Universidad de Zaragoza; España Fil: Egyed, Balazs. Eotvos University, Budapest; Argentina Fil: Balitzki, Beate. Universidad de Basilea; Suiza Fil: Tschumi, Sibylle. Universidad de Basilea; Suiza Fil: Ballard, David. King; Reino Unido Fil: Syndercombe Court, Denise. King; Reino Unido Fil: Barrantes, Xinia. Poder Judicial, Forensic Sciences Department; Costa Rica Fil: Bäßler, Gerhard. Landeskriminalamt Baden-Württemberg; Alemania Fil: Berger, Burkhard. Universidad de Innsbruck; Austria Fil: Niederstätter, Haral. Universidad de Innsbruck; Austria Fil: Parson, Walther. Universidad de Innsbruck; Austria. University Park; Estados Unidos Fil: Davis, Carey. Department of Molecular and Medical Genetics; Estados Unidos. Institute of Applied Genetics; Estados Unidos Fil: Furfuro, Sandra. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Laboratorio de Análisis de ADN; Argentina Fil: Locarno, Laura. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Laboratorio de Análisis de ADN; Argentina
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