52 results on '"Gayathri, J."'
Search Results
2. Pandemic-Related Changes in the Prevalence of Early Adolescent Alcohol and Drug Use, 2020–2021: Data From a Multisite Cohort Study
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Pelham, William E, Tapert, Susan F, Zúñiga, María Luisa, Thompson, Wesley K, Wade, Natasha E, Gonzalez, Marybel R, Patel, Herry, Baker, Fiona C, Dowling, Gayathri J, Van Rinsveld, Amandine M, Baskin-Sommers, Arielle, Kiss, Orsolya, and Brown, Sandra A
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Pediatric ,Nicotine ,Pediatric Research Initiative ,Psychology and Cognitive Sciences ,Public Health, Environmental and Occupational Health ,COVID-19 ,Drugs ,Medical and Health Sciences ,Adolescence ,Brain Disorders ,Education ,Alcoholism ,Alcohol Use and Health ,Substance Misuse ,Psychiatry and Mental health ,Good Health and Well Being ,Pediatrics, Perinatology and Child Health ,Mental health ,Public Health ,Alcohol ,Drug Abuse (NIDA only) ,Cannabis - Abstract
PurposeEvaluate changes in early adolescent substance use from May 2020 to May 2021 during the coronavirus disease 2019 pandemic using data from a prospective nationwide cohort: the Adolescent Brain Cognitive Development Study.MethodsIn 2018-2019, 9,270 youth aged 11.5-13.0 completed a prepandemic assessment of past-month alcohol and drug use, then up to seven during-pandemic assessments between May 2020 and May 2021. We compared the prevalence of substance use among same-age youth across these eight timepoints.ResultsPandemic-related decreases in the past-month prevalence of alcohol use were detectable in May 2020, grew larger over time, and remained substantial in May 2021 (0.3% vs. 3.2% prepandemic, p
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- 2023
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3. Effects of the COVID-19 pandemic on screen time and sleep in early adolescents
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Orsolya Kiss, Jason M. Nagata, Massimiliano de Zambotti, Anthony Steven Dick, Andrew T. Marshall, Elizabeth R. Sowell, Amandine Van Rinsveld, Mathieu Guillaume, William E. Pelham, Marybel R. Gonzalez, Sandra A. Brown, Gayathri J. Dowling, Krista M. Lisdahl, Susan F. Tapert, and Fiona C. Baker
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Psychiatry and Mental health ,Applied Psychology - Published
- 2023
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4. Family Well-Being During the COVID-19 Pandemic: The Risks of Financial Insecurity and Coping
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Gonzalez, Marybel R, Brown, Sandra A, Pelham, William E, Bodison, Stefanie C, McCabe, Connor, Baker, Fiona C, Baskin-Sommers, Arielle, Dick, Anthony Steven, Dowling, Gayathri J, Gebreselassie, Sabrina, Guillaume, Mathieu, Marshall, Andrew T, Sheth, Chandni, Sowell, Elizabeth R, Van Rinsveld, Amandine, and Tapert, Susan F
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Pediatric ,Social Work ,Adolescent ,Prevention ,Neurosciences ,COVID-19 ,COVID-19 pandemic ,financial insecurity ,Developmental & Child Psychology ,Adolescent Development ,family well-being ,Brain Disorders ,coping ,Mental Health ,Good Health and Well Being ,2.3 Psychological ,Behavioral and Social Science ,Humans ,Psychological ,Psychology ,Adaptation ,social and economic factors ,Aetiology ,Pandemics - Abstract
During the COVID-19 pandemic, families have experienced unprecedented financial and social disruptions. We studied the impact of preexisting psychosocial factors and pandemic-related financial and social disruptions in relation to family well-being among N = 4091 adolescents and parents during early summer 2020, participating in the Adolescent Brain Cognitive DevelopmentSM Study. Poorer family well-being was linked to prepandemic psychosocial and financial adversity and was associated with pandemic-related material hardship and social disruptions to routines. Parental alcohol use increased risk for worsening of family relationships, while a greater endorsement of coping strategies was mainly associated with overall better family well-being. Financial and mental health support may be critical for family well-being during and after a widespread crisis, such as the COVID-19 pandemic.
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- 2023
5. Early Adolescent Substance Use Before and During the COVID-19 Pandemic: A Longitudinal Survey in the ABCD Study Cohort
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Gayathri J. Dowling, Fiona C. Baker, Elisabet Alzueta, Anthony Steven Dick, Amandine Van Rinsveld, Sandra A. Brown, Krista M. Lisdahl, Wesley K. Thompson, Mathieu Guillaume, William E. Pelham, Connor J. McCabe, Marybel Robledo Gonzalez, Natasha E. Wade, Elizabeth A. Hoffman, Elizabeth R. Sowell, Andrew T. Marshall, Florence J. Breslin, Chandni Sheth, Susan F. Tapert, and Bruce D. McCandliss
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medicine.medical_specialty ,Adolescent ,Substance-Related Disorders ,media_common.quotation_subject ,Article ,Pandemic ,medicine ,Humans ,Longitudinal Studies ,Prospective Studies ,Medical prescription ,Prospective cohort study ,Psychiatry ,Pandemics ,Depression (differential diagnoses) ,media_common ,biology ,SARS-CoV-2 ,business.industry ,Infant, Newborn ,Public Health, Environmental and Occupational Health ,COVID-19 ,biology.organism_classification ,Psychiatry and Mental health ,Pediatrics, Perinatology and Child Health ,Cohort ,Anxiety ,Cannabis ,Worry ,medicine.symptom ,business - Abstract
Purpose Evaluate changes in early adolescent substance use during the coronavirus disease 2019 (COVID-19) pandemic using a prospective, longitudinal, nationwide cohort. Methods Participants were enrolled in the Adolescent Brain Cognitive Development Study. A total of 7,842 youth (mean age = 12.4 years, range = 10.5–14.6) at 21 study sites across the U.S. completed a three-wave assessment of substance use between May and August 2020. Youth reported whether they had used alcohol, nicotine, cannabis, or other substances in the past 30 days. Data were linked to prepandemic surveys that the same youth had completed in the years 2018–2020, before the advent of the COVID-19 pandemic. Results Past-30-day substance use remained stable in the 6 months since stay-at-home orders were first issued in U.S. states/counties; was primarily episodic (1–2 days in the past month); and was typically limited to a single substance. Using pretest/posttest and age-period designs, we found that compared to before the pandemic, fewer youth were using alcohol and more youth were using nicotine or misusing prescription drugs. During the pandemic, youth were more likely to use substances when they were more stressed by pandemic-related uncertainty; their family experienced material hardship; their parents used alcohol or drugs; or they experienced greater depression or anxiety. Neither engagement in social distancing nor worry about COVID-19 infection was associated with substance use. Several risk factors were stronger among older (vs. younger) adolescents. Conclusions Among youth in early adolescence, advent of the COVID-19 pandemic was associated with decreased use of alcohol and increased use of nicotine and misuse of prescription drugs.
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- 2021
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6. Baseline brain function in the preadolescents of the ABCD Study
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Kenneth J. Sher, Natasha E. Wade, Damien A. Fair, Fiona C. Baker, Charles J. Heyser, John K. Hewitt, N Rajapaske, Kristina M. Rapuano, Susan Y. Bookheimer, Deborah A. Yurgelun-Todd, John J. Foxe, Dylan G. Gee, Rada K. Dagher, Jody Tanabe, Judith A. Arroyo, R James, Carolina Makowski, C Lessov-Schlagger, Andrey P. Anokhin, Chandni Sheth, Perry F. Renshaw, Raul Gonzalez, C Striley, Thompson Wk, Robert Todd Constable, Okan Irfanoglu, William G. Iacono, Max M. Owens, Bonnie J. Nagel, Anthony Steven Dick, Ryan Bogdan, Finnegan J. Calabro, Amanda Sheffield Morris, Arpana Agrawal, Susan R.B. Weiss, Alexandra Potter, Joel L. Steinberg, Michael C. Neale, Scott Mackey, Lindsay M. Squeglia, Sarah Edwards, P Murray, Marsha F. Lopez, Maria Alejandra Infante, M. De La Rosa, Kevin M. Gray, John A. Matochik, Andrew P. Prescot, Calhoun Vd, Sarah W. Feldstein-Ewing, Monica D. Rosenberg, L Ahonen, Nicole Speer, I Montoya, B. J. Casey, Antonio Noronha, William E. Pelham, Paul D. Shilling, M D Cornejo, C Mulford, Shelli Avenevoli, M Bloch, Sage Hahn, Carlo Pierpaoli, Elizabeth K. Do, Naomi P. Friedman, Matthew T. Sutherland, Bader Chaarani, N Lever, Rebekah S. Huber, G Morgan, Samuel W. Hawes, Linda Chang, Robert A. Zucker, Shana Adise, A Kaufman, O D Williams, M J Ross, Chun Chieh Fan, Edward G. Freedman, Christine L. Larson, B A Wiens, Leon I. Puttler, Paul E.A. Glaser, M Spittel, Mariana Sanchez, P Rojas, Meyer D. Glantz, Andrew T Marshall, Adriana Galván, Steven G. Heeringa, A Ksinan, P. A. F. Madden, Julie A. Dumas, D Blachman-Demner, D Schloesser, James M. Bjork, Sean N. Hatton, Jay N. Giedd, S Friedman-Hill, Rebecca DelCarmen-Wiggins, S Iyengar, R Yang, Michael P. Harms, Gayathri J. Dowling, Amal Isaiah, C Sripada, Mary M. Heitzeg, Christine C. Cloak, Susan F. Tapert, Robert Hermosillo, Vani Pariyadath, Eric Feczko, Matthew D. Albaugh, Nico U.F. Dosenbach, Andrew S. Nencka, Anders M. Dale, Paul Florsheim, D Pfefferbaum, Megan M. Herting, B Kit, Terry L. Jernigan, S.A. Brown, Arielle R. Baskin-Sommers, Job G. Godino, Kimberly H. LeBlanc, Joanna Jacobus, Gloria Reeves, Gretchen N. Neigh, W K Simmons, B Kelley, Florence J. Breslin, Michael C. Riedel, Duncan B. Clark, Martin P. Paulus, Linda B. Cottler, Rachel L. Tomko, Thomas Ernst, Hermine H. Maes, Krista M. Lisdahl, Katia D. Howlett, K Constable, Dana L. Wolff-Hughes, Steven Grant, Donald J. Hagler, Michael J. Mason, Marybel Robledo Gonzalez, Bruce D. McCandliss, Bernard F. Fuemmeler, Beatriz Luna, Hauke Bartsch, Jennifer Laurent, D Wing, Devin Prouty, Joshua M. Kuperman, Hugh Garavan, John M. Hettema, Claudiu Schirda, Richard Watts, Angela R. Laird, Hannah Loso, Clare E. Palmer, D K Yuan, Beda Jean-Francois, D Babcock, John E. Schulenberg, Frank Haist, Monica Luciana, A Ivanciu, Elizabeth A. Hoffman, A R Little, Nicole R. Karcher, Elizabeth R. Sowell, Sara Jo Nixon, Mirella Dapretto, Laika D. Aguinaldo, A C Heath, Anthony C. Juliano, Scott I. Vrieze, David A. Lewis, Masha Y. Ivanova, Marie T. Banich, Kara S. Bagot, Stefany Coxe, Marilyn A. Huestis, Kristina A. Uban, Nicholas Allgaier, Erin McGlade, Robin C. Corley, A Wilbur, Will M. Aklin, and Luke W. Hyde
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Male ,0301 basic medicine ,medicine.medical_specialty ,Longitudinal study ,Adolescent ,Audiology ,Stop signal ,behavioral disciplines and activities ,Article ,Task (project management) ,03 medical and health sciences ,0302 clinical medicine ,Neuroimaging ,Reference Values ,medicine ,Cognitive development ,Humans ,Child ,Working memory ,General Neuroscience ,Brain ,Cognition ,Adolescent Development ,Magnetic Resonance Imaging ,Anticipation ,030104 developmental biology ,Female ,Psychology ,Neuroscience ,psychological phenomena and processes ,030217 neurology & neurosurgery - Abstract
The Adolescent Brain Cognitive Development (ABCD) Study® is a 10-year longitudinal study of children recruited at ages 9 and 10. A battery of neuroimaging tasks are administered biennially to track neurodevelopment and identify individual differences in brain function. This study reports activation patterns from functional MRI (fMRI) tasks completed at baseline, which were designed to measure cognitive impulse control with a stop signal task (SST; N = 5,547), reward anticipation and receipt with a monetary incentive delay (MID) task (N = 6,657) and working memory and emotion reactivity with an emotional N-back (EN-back) task (N = 6,009). Further, we report the spatial reproducibility of activation patterns by assessing between-group vertex/voxelwise correlations of blood oxygen level-dependent (BOLD) activation. Analyses reveal robust brain activations that are consistent with the published literature, vary across fMRI tasks/contrasts and slightly correlate with individual behavioral performance on the tasks. These results establish the preadolescent brain function baseline, guide interpretation of cross-sectional analyses and will enable the investigation of longitudinal changes during adolescent development. This paper reports activation patterns for fMRI tasks assessing response inhibition, working memory and reward processing obtained at baseline in the longitudinal ABCD Study, providing a reference for research into adolescent brain development.
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- 2021
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7. Transforming the Future of Adolescent Health: Opportunities From the Adolescent Brain Cognitive Development Study
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Elizabeth A, Hoffman, Kimberly, LeBlanc, Susan R B, Weiss, and Gayathri J, Dowling
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Psychiatry and Mental health ,Cognition ,Adolescent ,Pediatrics, Perinatology and Child Health ,Adolescent Health ,Public Health, Environmental and Occupational Health ,Brain ,Humans ,Adolescent Development ,Article - Published
- 2022
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8. Targeted proteomic approaches in the context of COVID-19 pandemic
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Mehar Un Nissa, Alisha Srivastava, and Medha Gayathri J. Pai
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- 2022
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9. Measuring retention within the adolescent brain cognitive development (ABCD)SM study
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Sarah W. Feldstein Ewing, Genevieve F. Dash, Wesley K. Thompson, Chase Reuter, Vanessa G. Diaz, Andrey Anokhin, Linda Chang, Linda B. Cottler, Gayathri J. Dowling, Kimberly LeBlanc, Robert A. Zucker, Susan F. Tapert, Sandra A. Brown, and Hugh Garavan
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Parents ,Pediatric ,Neurophysiology and neuropsychology ,Adolescent ,Cognitive Neuroscience ,Longitudinal studies ,QP351-495 ,Clinical Sciences ,Neurosciences ,Brain ,ABCDstudy ,Adolescents ,Cognition ,Retention ,Behavioral and Social Science ,ABCD study® ,Humans ,Educational Status ,Cognitive Sciences ,Metrics - Abstract
The Adolescent Brain Cognitive Development (ABCD)SM study aims to retain a demographically diverse sample of youth and one parent across 21 sites throughout its 10-year protocol while minimizing selective (systematic) attrition. To evaluate the effectiveness of these efforts, the ABCD Retention Workgroup (RW) has employed a data-driven approach to examine, track, and intervene via three key metrics: (1) which youth completed visits late; (2) which youth missed visits; and (3) which youth withdrew from the study. The RW actively examines demographic (race, education level, family income) and site factors (visit satisfaction, distance from site, and enrollment in ancillary studies) to strategize efforts that will minimize disengagement and loss of participating youth and parents. Data showed that the most robust primary correlates of late visits were distance from study site, race, and parental education level. Race, lower parental education level, parental employment status, and lower family income were associated with higher odds of missed visits, while being enrolled in one of the ancillary studies was associated with lower odds of missed visits. Additionally, parents who were primary Spanish speakers withdrew at slightly higher rates. These findings provide insight into future targets for proactive retention efforts by the ABCD RW.
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- 2022
10. Negative Impacts of Pandemic Induced At-Home Remote Learning Can Be Mitigated by Parental Involvement
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Mathieu Guillaume, Elizabeth Y. Toomarian, Amandine Van Rinsveld, Arielle Baskin-Sommers, Anthony Steven Dick, Gayathri J. Dowling, Marybel Robledo Gonzalez, Lindsey Hasak, Krista M. Lisdahl, Andrew T. Marshall, Quynh Trang H. Nguyen, William E. Pelham, Cha Cha Pillai, Chandni Sheth, Angie M. Wang, Susan F. Tapert, and Bruce D. McCandliss
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education ,Education - Abstract
Format changes in U.S. schooling in response to the COVID-19 pandemic varied by month and by school district, ranging from exclusively home-based to full in-person learning. The impact of these changes on adolescent schooling experiences, and the factors that mitigate such impact, have been challenging to quantify. To address these challenges we employed bi-monthly repeated surveys of youths (N = 6, 546, aged 13–14 years) in a longitudinal study, starting before the pandemic peak (October 2020) and continuing through one year after the pandemic was declared (March 2021). We investigated how school format (in-person vs. remote) impacted objective time spent on academic activities and the subjective experience of school, and how these were influenced by parental engagement. Periods of exclusive at-home remote schooling were pervasive—reported by more than 60% of youths—and linked to a reduction in school enjoyment and time spent on reading, math, and science. In contrast, such periods were linked to more time with parents or guardians helping with school activities, and the frequency of such parental involvement was associated with reductions in negative feelings about school. Results point to potential pathways to mitigate the negative consequences of future school disruptions.
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- 2022
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11. Mass spectrometry and proteome analysis to identify SARS-CoV-2 protein from COVID-19 patient swab samples
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Arghya Banerjee, Medha Gayathri J Pai, Avinash Singh, Mehar Un Nissa, and Sanjeeva Srivastava
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Male ,Proteomics ,Science (General) ,General Immunology and Microbiology ,SARS-CoV-2 ,General Neuroscience ,COVID-19 ,General Biochemistry, Genetics and Molecular Biology ,Mass Spectrometry ,Specimen Handling ,Viral Proteins ,Q1-390 ,Tandem Mass Spectrometry ,Nasopharynx ,Protein Biochemistry ,Health Sciences ,Protocol ,Humans ,Female ,Clinical Protocol - Abstract
With emerging SARS-CoV-2 new strains and their increased pathogenicity, diagnosis has become more challenging. Molecular diagnosis often involves the use of nasopharyngeal swab and subsequent real-time PCR-based test. While this test is the gold standard, it has several limitations and more complementary assays are required. This protocol describes how to identify SARS-CoV-2 protein from patients' nasopharyngeal swab samples. We first introduce the approach of label-free quantitative proteomics. We then detail target verification by triple quadrupole mass spectrometry (M.S.)-based targeted proteomics., Graphical Abstract
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- 2022
12. The Pandemic's Toll on Young Adolescents: Prevention and Intervention Targets to Preserve Their Mental Health
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Orsolya Kiss, Elisabet Alzueta, Dilara Yuksel, Kilian M. Pohl, Massimiliano de Zambotti, Eva M. Műller-Oehring, Devin Prouty, Ingrid Durley, William E. Pelham, Connor J. McCabe, Marybel R. Gonzalez, Sandra A. Brown, Natasha E. Wade, Andrew T. Marshall, Elizabeth R. Sowell, Florence J. Breslin, Krista M. Lisdahl, Anthony S. Dick, Chandni S. Sheth, Bruce D. McCandliss, Mathieu Guillaume, Amandine M. Van Rinsveld, Gayathri J. Dowling, Susan F. Tapert, and Fiona C. Baker
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Adolescent ,Adolescents ,Basic Behavioral and Social Science ,Medical and Health Sciences ,Education ,Clinical Research ,2.3 Psychological ,Behavioral and Social Science ,Sex differences ,Humans ,Longitudinal Studies ,Aetiology ,Children ,Pandemics ,Violence Research ,Pediatric ,Pandemic ,Depression ,SARS-CoV-2 ,Prevention ,Psychology and Cognitive Sciences ,Public Health, Environmental and Occupational Health ,COVID-19 ,Psychiatry and Mental health ,Good Health and Well Being ,Mental Health ,Mental-health ,Pediatrics, Perinatology and Child Health ,Original Article ,Female ,Public Health ,social and economic factors ,Sleep ,Mind and Body - Abstract
Purpose Adolescence is characterized by dramatic physical, social, and emotional changes, making teens particularly vulnerable to the mental health effects of the COVID-19 pandemic. This longitudinal study identifies young adolescents who are most vulnerable to the psychological toll of the pandemic and provides insights to inform strategies to help adolescents cope better in times of crisis. Methods A data-driven approach was applied to a longitudinal, demographically diverse cohort of more than 3,000 young adolescents (10–14 years) participating in the ongoing Adolescent Brain Cognitive Development Study in the United States, including multiple prepandemic visits and three assessments during the COVID-19 pandemic (May–August 2020). We fitted machine learning models and provided a comprehensive list of predictors of psychological distress in individuals. Results Positive affect, stress, anxiety, and depressive symptoms were accurately detected with our classifiers. Female sex and prepandemic internalizing symptoms and sleep problems were strong predictors of psychological distress. Parent- and youth-reported pandemic-related psychosocial factors, including poorer quality and functioning of family relationships, more screen time, and witnessing discrimination in relation to the pandemic further predicted youth distress. However, better social support, regular physical activities, coping strategies, and healthy behaviors predicted better emotional well-being. Conclusions Findings highlight the importance of social connectedness and healthy behaviors, such as sleep and physical activity, as buffering factors against the deleterious effects of the pandemic on adolescents' mental health. They also point to the need for greater attention toward coping strategies that help the most vulnerable adolescents, particularly girls and those with prepandemic psychological problems.
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- 2022
13. A Comprehensive Overview of the Physical Health of the Adolescent Brain Cognitive Development Study Cohort at Baseline
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Clare E. Palmer, Chandni Sheth, Andrew T. Marshall, Shana Adise, Fiona C. Baker, Linda Chang, Duncan B. Clark, Clarisa Coronado, Rada K. Dagher, Vanessa Diaz, Gayathri J. Dowling, Marybel R. Gonzalez, Frank Haist, Megan M. Herting, Rebekah S. Huber, Terry L. Jernigan, Kimberly LeBlanc, Karen Lee, Krista M. Lisdahl, Gretchen Neigh, Megan W. Patterson, Perry Renshaw, Kyung E. Rhee, Susan Tapert, Wesley K. Thompson, Kristina Uban, Elizabeth R. Sowell, and Deborah Yurgelun-Todd
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Gerontology ,puberty ,physical activity ,Basic Behavioral and Social Science ,Pediatrics ,RJ1-570 ,middle childhood ,Paediatrics and Reproductive Medicine ,Clinical Research ,Behavioral and Social Science ,Cognitive development ,Medicine ,sleep ,Young adult ,Baseline (configuration management) ,sociodemographics ,Original Research ,Pediatric ,Other Medical and Health Sciences ,business.industry ,Prevention ,Neurosciences ,Physical health ,Good Health and Well Being ,Developmental Milestone ,Cohort ,Pediatrics, Perinatology and Child Health ,Normative ,business ,physical health ,developmental milestones ,Body mass index - Abstract
Physical health in childhood is crucial for neurobiological as well as overall development, and can shape long-term outcomes into adulthood. The landmark, longitudinal Adolescent Brain Cognitive Development StudySM (ABCD study®), was designed to investigate brain development and health in almost 12,000 youth who were recruited when they were 9–10 years old and will be followed through adolescence and early adulthood. The overall goal of this paper is to provide descriptive analyses of physical health measures in the ABCD study at baseline, including but not limited to sleep, physical activity and sports involvement, and body mass index. Further this summary will describe how physical health measures collected from the ABCD cohort compare with current normative data and clinical guidelines. We propose this data set has the potential to facilitate clinical recommendations and inform national standards of physical health in this age group. This manuscript will also provide important information for ABCD users and help guide analyses investigating physical health including new avenues for health disparity research as it pertains to adolescent and young adult development.
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- 2021
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14. Quantitative Proteomics Workflow using Multiple Reaction Monitoring Based Detection of Proteins from Human Brain Tissue
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Saicharan Ghantasala, Medha Gayathri J Pai, and Sanjeeva Srivastava
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Proteomics ,General Immunology and Microbiology ,Computer science ,General Chemical Engineering ,General Neuroscience ,Selected reaction monitoring ,Quantitative proteomics ,Brain ,Proteins ,Computational biology ,Tandem mass spectrometry ,General Biochemistry, Genetics and Molecular Biology ,Triple quadrupole mass spectrometer ,Workflow ,Tandem Mass Spectrometry ,Humans ,Shotgun proteomics ,Quadrupole mass analyzer - Abstract
The proteomic analysis of the human brain tissue over the last decade has greatly enhanced our understanding of the brain. However, brain related disorders continue to be a major contributor of deaths around the world, necessitating the need for even greater understanding of their pathobiology. Traditional antibody-based techniques like western blotting or immunohistochemistry suffer from being low-throughput besides being labor-intensive and qualitative or semi-quantitative. Even conventional mass spectrometry-based shotgun approaches fail to provide conclusive evidence to support a certain hypothesis. Targeted proteomics approaches are largely hypothesis driven and differ from the conventional shotgun proteomics approaches that have been long in use. Multiple reaction monitoring is one such targeted approach that requires the use of a special mass spectrometer called the tandem quadrupole mass spectrometer or triple quadrupole mass spectrometer. In the current study, we have systematically highlighted the major steps involved in performing a successful tandem quadrupole mass spectrometry-based proteomics workflow using human brain tissue with an aim to introduce this workflow to a broader research community.
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- 2021
15. Early Adolescent Substance Use Before and During the COVID-19 Pandemic: A Longitudinal Survey in the ABCD Study Cohort
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Pelham, William E, Tapert, Susan F, Gonzalez, Marybel Robledo, McCabe, Connor J, Lisdahl, Krista M, Alzueta, Elisabet, Baker, Fiona C, Breslin, Florence J, Dick, Anthony Steven, Dowling, Gayathri J, Guillaume, Mathieu, Hoffman, Elizabeth A, Marshall, Andrew T, McCandliss, Bruce D, Sheth, Chandni S, Sowell, Elizabeth R, Thompson, Wesley K, Van Rinsveld, Amandine M, Wade, Natasha E, and Brown, Sandra A
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Pediatric Research Initiative ,Adolescent ,Substance-Related Disorders ,Drinking ,Anxiety ,Stress ,Medical and Health Sciences ,Education ,Alcohol Use and Health ,Substance Misuse ,Clinical Research ,Behavioral and Social Science ,Humans ,Longitudinal Studies ,Prospective Studies ,Drug use ,Pandemics ,Pediatric ,SARS-CoV-2 ,Depression ,Prevention ,Psychology and Cognitive Sciences ,Infant ,COVID-19 ,Newborn ,Brain Disorders ,Alcoholism ,Good Health and Well Being ,Mental health ,Public Health ,Drug Abuse (NIDA only) - Abstract
PurposeEvaluate changes in early adolescent substance use during the coronavirus disease 2019 (COVID-19) pandemic using a prospective, longitudinal, nationwide cohort.MethodsParticipants were enrolled in the Adolescent Brain Cognitive Development Study. A total of 7,842 youth (mean age= 12.4years, range= 10.5-14.6) at 21 study sites across the U.S. completed a three-wave assessment of substance use between May and August 2020. Youth reported whether they had used alcohol, nicotine, cannabis, or other substances in the past 30days. Data were linked to prepandemic surveys that the same youth had completed in the years 2018-2020, before the advent of the COVID-19 pandemic.ResultsPast-30-day substance use remained stable in the 6months since stay-at-home orders were first issued in U.S. states/counties; was primarily episodic (1-2days in the past month); and was typically limited to a single substance. Using pretest/posttest and age-period designs, we found that compared to before the pandemic, fewer youth were using alcohol and more youth were using nicotine or misusing prescription drugs. During the pandemic, youth were more likely to use substances when they were more stressed by pandemic-related uncertainty; their family experienced material hardship; their parents used alcohol or drugs; or they experienced greater depression or anxiety. Neither engagement in social distancing nor worry about COVID-19 infection was associated with substance use. Several risk factors were stronger among older (vs. younger) adolescents.ConclusionsAmong youth in early adolescence, advent of the COVID-19 pandemic was associated with decreased use of alcohol and increased use of nicotine and misuse of prescription drugs.
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- 2021
16. Air Pollution and Stock Returns: Evidence from NSE and BSE of India
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Chinnadurai Kathiravan, Mariappan Raja, Murugesan Selvam, and Gayathri J
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Management of Technology and Innovation ,General Engineering - Abstract
Air pollution issue has become an important environmental problem in India. This paper proposes to examine the influence of Delhi Air Pollution on the two Indian stock indices, using Descriptive Statistics, Unit Root, and OLS regression. The analysis of the study found that Delhi Air Pollution did create a statistically significant effect on Nifty. This is the first study of this type to look into the effects of air quality issue on stock market indices in India
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- 2019
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17. Demonetisation Announcement and Price Movement of Indian Sectoral Indice
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Gayathri J, Manivannan Babu, and Hariharan C
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Management of Technology and Innovation ,General Engineering - Abstract
The information about changes in economic policies in a country may influence its stock market. The demonetisation has its impact on various segments of the economy. Thus the study aims to analyse the price movement of Indian sectoral indices around the demonetisation announcements. The daily price returns were tested using GARCH (1, 1) Model and it found that low volatility was found in the post announcement period compared to the pre-announcement period. Thus the present study confirmed that Indian sectoral indices were influenced by the demonetization announcement. Therefore, investors should be aware of economic events while investing in the stock market.
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- 2019
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18. TEEN SUBSTANCE USE AND THE ABCD STUDY: RECENT DATA AND ITS RELEVANCE FOR CHILD AND ADOLESCENT PSYCHIATRISTS
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Paul E.A. Glaser and Gayathri J. Dowling
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Psychiatry and Mental health ,Developmental and Educational Psychology - Published
- 2022
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19. Location matters: Regional variation in association of community burden of COVID-19 with caregiver and youth worry
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Andrew T. Marshall, Daniel A. Hackman, Eric Kan, Shermaine Abad, Fiona C. Baker, Arielle Baskin-Sommers, Gayathri J. Dowling, Marybel R. Gonzalez, Mathieu Guillaume, Orsolya Kiss, Connor J. McCabe, Bruce D. McCandliss, William E. Pelham, Susan F. Tapert, Amandine Van Rinsveld, and Elizabeth R. Sowell
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Pediatric ,Health (social science) ,Adolescent ,Geography, Planning and Development ,Public Health, Environmental and Occupational Health ,COVID-19 ,Anxiety ,Human Geography ,Good Health and Well Being ,Caregivers ,Behavioral and Social Science ,Public Health and Health Services ,Humans ,Public Health ,Residence characteristics ,Mind and Body ,Pandemics - Abstract
Our study characterized associations between three indicators of COVID-19's community-level impact in 20 geographically diverse metropolitan regions and how worried youth and their caregivers in the Adolescent Brain Cognitive Development℠ Study have been about COVID-19. County-level COVID-19 case/death rates and monthly unemployment rates were geocoded to participants' addresses. Caregivers' (vs. youths') COVID-19-related worry was more strongly associated with COVID-19's community impact, independent of sociodemographics and pre-pandemic anxiety levels, with these associations varying by location. Public-health agencies and healthcare providers should avoid adopting uniform "one-size-fits-all" approaches to addressing COVID-19-related emotional distress and must consider specific communities' needs, challenges, and strengths.
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- 2022
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20. A Multi-omics Longitudinal Study Reveals Alteration of the Leukocyte Activation Pathway in COVID-19 Patients
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Om Shrivastav, Alisha Srivastava, Jayanthi Shastri, Viswanthram Palanivel, Renuka Bankar, Medha Gayathri J Pai, Sachee Agrawal, Avinash Kumar Singh, Akanksha Salkar, Sanjeeva Srivastava, Nirjhar Banerjee, Harsh Khatri, and Kruthi Suvarna
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Proteomics ,longitudinal ,medicine.medical_treatment ,Quantitative proteomics ,Biology ,Lung injury ,Biochemistry ,Article ,Pathogenesis ,Metabolomics ,Tandem Mass Spectrometry ,medicine ,Leukocytes ,Humans ,Longitudinal Studies ,mass spectrometry ,SARS-CoV-2 ,COVID-19 ,General Chemistry ,Myeloid leukocyte activation ,medicine.disease ,metabolomics ,Cytokine ,Cancer research ,Cytokine storm ,Chromatography, Liquid - Abstract
Severe coronavirus disease 2019 (COVID-19) infection may lead to lung injury, multi-organ failure, and eventually death. Cytokine storm due to excess cytokine production has been associated with fatality in severe infections. However, the specific molecular signatures associated with the elevated immune response are yet to be elucidated. We performed a mass-spectrometry-based proteomic and metabolomic analysis of COVID-19 plasma samples collected at two time points. Using Orbitrap Fusion LC-MS/MS-based label-free proteomic analysis, we identified around 10 significant proteins, 32 significant peptides, and 5 metabolites that were dysregulated at the severe time points. Few of these proteins identified by quantitative proteomics were validated using the multiple reaction monitoring (MRM) assay. Integrated pathway analysis using distinct proteomic and metabolomic signatures revealed alterations in complement and coagulation cascade, platelet aggregation, myeloid leukocyte activation pathway, and arginine metabolism. Further, we highlight the role of leukocyte activation and arginine metabolism in COVID-19 pathogenesis and targeting these pathways for COVID-19 therapeutics.
- Published
- 2021
21. Measuring retention within the adolescent brain cognitive development (ABCD)
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Sarah W, Feldstein Ewing, Genevieve F, Dash, Wesley K, Thompson, Chase, Reuter, Vanessa G, Diaz, Andrey, Anokhin, Linda, Chang, Linda B, Cottler, Gayathri J, Dowling, Kimberly, LeBlanc, Robert A, Zucker, Susan F, Tapert, Sandra A, Brown, and Hugh, Garavan
- Subjects
Parents ,Cognition ,Adolescent ,Brain ,Educational Status ,Humans - Abstract
The Adolescent Brain Cognitive Development (ABCD)
- Published
- 2021
22. Pneumatic Vibration Isolator Response for Low, Infrasonic and High Frequency Vibration
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Kirthika S, Gayathri J S, S K Sreenivasan Nair, Abdul Rasheed A K, and Nissar C S
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- 2021
- Full Text
- View/download PDF
23. Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing Potential
- Author
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Akanksha Salkar, Deeptarup Biswas, Sanjeeva Srivastava, Avinash Kumar Singh, Om Shrivastav, Ayushi Verma, Ananya Burli, Surbhi Bihani, Jayanthi Shastri, Gaurish Loya, Manisha Choudhury, Viswanthram Palanivel, Renuka Bankar, Apoorva Badaya, Krishi Mantri, Arghya Banerjee, Jyotirmoy Roy, Kruthi Suvarna, Sachee Agrawal, Saicharan Ghantasala, Medha Gayathri J Pai, Susmita Ghosh, Alisha Srivastava, Arup Acharjee, and Amrita Mukherjee
- Subjects
Fibrinogen-gamma chain ,Physiology ,In silico ,Quantitative proteomics ,Disease ,Proteomics ,Machine learning ,computer.software_genre ,prognostic biomarkers ,chemistry.chemical_compound ,proteomics ,drug-repurposing ,Physiology (medical) ,QP1-981 ,host response ,Medicine ,Original Research ,mass spectrometry ,business.industry ,Ponatinib ,COVID-19 plasma ,machine learning ,Targeted mass spectrometry ,chemistry ,Proteome ,Artificial intelligence ,business ,molecular pathways ,computer - Abstract
The pestilential pathogen SARS-CoV-2 has led to a seemingly ceaseless pandemic of COVID-19. The healthcare sector is under a tremendous burden, thus necessitating the prognosis of COVID-19 severity. This in-depth study of plasma proteome alteration provides insights into the host physiological response towards the infection and also reveals the potential prognostic markers of the disease. Using label-free quantitative proteomics, we performed deep plasma proteome analysis in a cohort of 71 patients (20 COVID-19 negative, 18 COVID-19 non-severe, and 33 severe) to understand the disease dynamics. Of the 1200 proteins detected in the patient plasma, 38 proteins were identified to be differentially expressed between non-severe and severe groups. The altered plasma proteome revealed significant dysregulation in the pathways related to peptidase activity, regulated exocytosis, blood coagulation, complement activation, leukocyte activation involved in immune response, and response to glucocorticoid biological processes in severe cases of SARS-CoV-2 infection. Furthermore, we employed supervised machine learning (ML) approaches using a linear support vector machine model to identify the classifiers of patients with non-severe and severe COVID-19. The model used a selected panel of 20 proteins and classified the samples based on the severity with a classification accuracy of 0.84. Putative biomarkers such as angiotensinogen and SERPING1 and ML-derived classifiers including the apolipoprotein B, SERPINA3, and fibrinogen gamma chain were validated by targeted mass spectrometry-based multiple reaction monitoring (MRM) assays. We also employed an in silico screening approach against the identified target proteins for the therapeutic management of COVID-19. We shortlisted two FDA-approved drugs, namely, selinexor and ponatinib, which showed the potential of being repurposed for COVID-19 therapeutics. Overall, this is the first most comprehensive plasma proteome investigation of COVID-19 patients from the Indian population, and provides a set of potential biomarkers for the disease severity progression and targets for therapeutic interventions.
- Published
- 2021
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- View/download PDF
24. Correspondence Between Perceived Pubertal Development and Hormone Levels in 9-10 Year-Olds From the Adolescent Brain Cognitive Development Study
- Author
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Megan M. Herting, Kristina A. Uban, Marybel Robledo Gonzalez, Fiona C. Baker, Eric C. Kan, Wesley K. Thompson, Douglas A. Granger, Matthew D. Albaugh, Andrey P. Anokhin, Kara S. Bagot, Marie T. Banich, Deanna M. Barch, Arielle Baskin-Sommers, Florence J. Breslin, B. J. Casey, Bader Chaarani, Linda Chang, Duncan B. Clark, Christine C. Cloak, R. Todd Constable, Linda B. Cottler, Rada K. Dagher, Mirella Dapretto, Anthony S. Dick, Nico Dosenbach, Gayathri J. Dowling, Julie A. Dumas, Sarah Edwards, Thomas Ernst, Damien A. Fair, Sarah W. Feldstein-Ewing, Edward G. Freedman, Bernard F. Fuemmeler, Hugh Garavan, Dylan G. Gee, Jay N. Giedd, Paul E. A. Glaser, Aimee Goldstone, Kevin M. Gray, Samuel W. Hawes, Andrew C. Heath, Mary M. Heitzeg, John K. Hewitt, Charles J. Heyser, Elizabeth A. Hoffman, Rebekah S. Huber, Marilyn A. Huestis, Luke W. Hyde, M. Alejandra Infante, Masha Y. Ivanova, Joanna Jacobus, Terry L. Jernigan, Nicole R. Karcher, Angela R. Laird, Kimberly H. LeBlanc, Krista Lisdahl, Monica Luciana, Beatriz Luna, Hermine H. Maes, Andrew T. Marshall, Michael J. Mason, Erin C. McGlade, Amanda S. Morris, Bonnie J. Nagel, Gretchen N. Neigh, Clare E. Palmer, Martin P. Paulus, Alexandra S. Potter, Leon I. Puttler, Nishadi Rajapakse, Kristina Rapuano, Gloria Reeves, Perry F. Renshaw, Claudiu Schirda, Kenneth J. Sher, Chandni Sheth, Paul D. Shilling, Lindsay M. Squeglia, Matthew T. Sutherland, Susan F. Tapert, Rachel L. Tomko, Deborah Yurgelun-Todd, Natasha E. Wade, Susan R. B. Weiss, Robert A. Zucker, and Elizabeth R. Sowell
- Subjects
Male ,puberty ,Future studies ,Endocrinology, Diabetes and Metabolism ,lcsh:Diseases of the endocrine glands. Clinical endocrinology ,0302 clinical medicine ,dehydroepiandrosterone ,Endocrinology ,Child Development ,Cognitive development ,Testosterone ,Sexual Maturation ,Child ,Gonadal Steroid Hormones ,Original Research ,Pediatric ,Nutrition and Dietetics ,Group factor ,Estradiol ,05 social sciences ,Brain maturation ,Mental Health ,visual_art ,visual_art.visual_art_medium ,Female ,Psychology ,pubertal development scale ,050104 developmental & child psychology ,Pediatric Research Initiative ,Adolescent ,Clinical Sciences ,Basic Behavioral and Social Science ,Young adolescents ,salivary hormones ,03 medical and health sciences ,Clinical Research ,estradiol ,Behavioral and Social Science ,Humans ,0501 psychology and cognitive sciences ,Weight status ,Goldstone ,lcsh:RC648-665 ,Prevention ,Contraception/Reproduction ,Dehydroepiandrosterone ,Adolescent Development ,adolescent brain cognitive development ,Good Health and Well Being ,Cross-Sectional Studies ,Socioeconomic Factors ,testosterone ,Self Report ,Substance use ,Humanities ,030217 neurology & neurosurgery - Abstract
Author(s): Herting, Megan M; Uban, Kristina A; Gonzalez, Marybel Robledo; Baker, Fiona C; Kan, Eric C; Thompson, Wesley K; Granger, Douglas A; Albaugh, Matthew D; Anokhin, Andrey P; Bagot, Kara S; Banich, Marie T; Barch, Deanna M; Baskin-Sommers, Arielle; Breslin, Florence J; Casey, BJ; Chaarani, Bader; Chang, Linda; Clark, Duncan B; Cloak, Christine C; Constable, R Todd; Cottler, Linda B; Dagher, Rada K; Dapretto, Mirella; Dick, Anthony S; Dosenbach, Nico; Dowling, Gayathri J; Dumas, Julie A; Edwards, Sarah; Ernst, Thomas; Fair, Damien A; Feldstein-Ewing, Sarah W; Freedman, Edward G; Fuemmeler, Bernard F; Garavan, Hugh; Gee, Dylan G; Giedd, Jay N; Glaser, Paul EA; Goldstone, Aimee; Gray, Kevin M; Hawes, Samuel W; Heath, Andrew C; Heitzeg, Mary M; Hewitt, John K; Heyser, Charles J; Hoffman, Elizabeth A; Huber, Rebekah S; Huestis, Marilyn A; Hyde, Luke W; Infante, M Alejandra; Ivanova, Masha Y; Jacobus, Joanna; Jernigan, Terry L; Karcher, Nicole R; Laird, Angela R; LeBlanc, Kimberly H; Lisdahl, Krista; Luciana, Monica; Luna, Beatriz; Maes, Hermine H; Marshall, Andrew T; Mason, Michael J; McGlade, Erin C; Morris, Amanda S; Nagel, Bonnie J; Neigh, Gretchen N; Palmer, Clare E; Paulus, Martin P; Potter, Alexandra S; Puttler, Leon I; Rajapakse, Nishadi; Rapuano, Kristina; Reeves, Gloria; Renshaw, Perry F; Schirda, Claudiu; Sher, Kenneth J; Sheth, Chandni; Shilling, Paul D; Squeglia, Lindsay M; Sutherland, Matthew T; Tapert, Susan F; Tomko, Rachel L; Yurgelun-Todd, Deborah; Wade, Natasha E; Weiss, Susan RB; Zucker, Robert A | Abstract: AimTo examine individual variability between perceived physical features and hormones of pubertal maturation in 9-10-year-old children as a function of sociodemographic characteristics.MethodsCross-sectional metrics of puberty were utilized from the baseline assessment of the Adolescent Brain Cognitive Development (ABCD) Study-a multi-site sample of 9-10 year-olds (n = 11,875)-and included perceived physical features via the pubertal development scale (PDS) and child salivary hormone levels (dehydroepiandrosterone and testosterone in all, and estradiol in females). Multi-level models examined the relationships among sociodemographic measures, physical features, and hormone levels. A group factor analysis (GFA) was implemented to extract latent variables of pubertal maturation that integrated both measures of perceived physical features and hormone levels.ResultsPDS summary scores indicated more males (70%) than females (31%) were prepubertal. Perceived physical features and hormone levels were significantly associated with child's weight status and income, such that more mature scores were observed among children that were overweight/obese or from households with low-income. Results from the GFA identified two latent factors that described individual differences in pubertal maturation among both females and males, with factor 1 driven by higher hormone levels, and factor 2 driven by perceived physical maturation. The correspondence between latent factor 1 scores (hormones) and latent factor 2 scores (perceived physical maturation) revealed synchronous and asynchronous relationships between hormones and concomitant physical features in this large young adolescent sample.ConclusionsSociodemographic measures were associated with both objective hormone and self-report physical measures of pubertal maturation in a large, diverse sample of 9-10 year-olds. The latent variables of pubertal maturation described a complex interplay between perceived physical changes and hormone levels that hallmark sexual maturation, which future studies can examine in relation to trajectories of brain maturation, risk/resilience to substance use, and other mental health outcomes.
- Published
- 2021
25. Proteomic Investigation Reveals Dominant Alterations of Neutrophil Degranulation and mRNA Translation Pathways in COVID-19 Patients
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Bankar, Renuka, Suvarna, Kruthi, Ghantasala, Saicharan, Banerjee, Arghya, Biswas, Deeptarup, Choudhury, Manisha, Viswanthram, P., Salkar, Akanksha, Verma, Ayushi, Singh, Avinash, Mukherjee, Amrita, Pai, Medha Gayathri J., Roy, Jyotirmoy, Srivastava, Alisha, Badaya, Apoorva, Agrawal, Sachee, Shrivastav, Om, Shastri, Jayanti, and Srivastava, Sanjeeva
- Subjects
Article - Abstract
The altered molecular proteins and pathways in response to COVID-19 infection are still unclear. Here, we performed a comprehensive proteomics-based investigation of nasopharyngeal swab samples from COVID-19 patients to study the host response by employing simple extraction strategies. Few of the host proteins such as Interleukin-6, L-lactate dehydrogenase, C-reactive protein, Ferritin and Aspartate aminotransferase were found to be up-regulated only in COVID-19 positive patients using targeted Multiple Reaction Monitoring studies. The most important pathways identified by enrichment analysis were neutrophil degranulation, interleukin-12 signaling pathways and mRNA translation of proteins thus providing the detailed investigation of host response in COVID-19 infection. Thus, we conclude that mass spectrometry-detected host proteins have a potential for disease severity progression; however, suitable validation strategies should be deployed for the clinical translation. Furthermore, the in-silico docking of host proteins involved in the interleukin-12 signaling pathway might aid in COVID-19 therapeutic interventions., Graphical Abstract, Highlights • High-resolution mass-spectrometry of swab identified 164 significant host proteins. • Upregulation of LDH, Ferritin and AST was validated by MRM assays. • Significant alteration of immune response and translational pathways was observed. • In silico docking identified Loratadine binding to interleukin signaling proteins.
- Published
- 2021
26. COVID-19 plasma deep proteome reveals distinct signatures in severe patients
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Om Shrivastav, Sanjeeva Srivastava, Saicharan Ghantasala, Ayushi Verma, Amrita Mukherjee, Renuka Bankar, Medha Gayathri J Pai, Manisha Choudhury, Ananya Burli, Surbhi Bihani, Krishi Mantri, Arghya Banerjee, Sachee Agrawal, Susmita Ghosh, Kruthi Suvarna, Jyotirmoy Roy, Alisha Srivastava, Arup Acharjee, Apoorva Badaya, Jayanthi Shastri, Deeptarup Biswas, Avinash Singh, P Viswanthram, and Akanksha Salkar
- Subjects
Coronavirus disease 2019 (COVID-19) ,Chemistry ,Proteome ,macromolecular substances ,Computational biology - Abstract
Prognosis and management of COVID-19 severity is a challenge even after months of the pandemic. Host plasma proteome alterations carry insights into the physiological alterations in response to the infection. Here we employed a mass spectrometry-based label-free quantitative proteomics approach to study alteration in plasma proteome in a cohort of 73 patients (20 COVID negative, 18 non-severe, and 33 severe) to understand the disease dynamics for addressing this challenge. Of the 1200 proteins detected in the patient plasma, 38 proteins were differentially expressed between non-severe and severe groups. The host proteins such as Angiotensinogen, apolipoprotein B, SERPINA3, SERPING1, and Fibrinogen gamma chain identified in LFQ analysis were further validated using targeted mass spectrometry assay. Utilizing our proteomics dataset, we identified multiple drugs that could inhibit the upregulated proteins involved in disease pathogenesis of these 2 FDA-approved drugs Selinexor and Ponatinib, which showed promise of being re-purposed for potential therapeutics of COVID-19. Plasma proteome identified significant dysregulation in the pathways related to peptidase activity, regulated exocytosis, blood coagulation, complement activation, leukocyte activation involved in immune response, and response to glucocorticoid biological processes during severe SARS-CoV-2 infection. Further, the results suggest that COVID-19 severity can be prognosticated using specific biomarkers of severity, and few of these proteins are excellent targets for re-purposed drugs.
- Published
- 2020
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27. Pattern Recognition Using Image Processing
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Ramya S and Gayathri J
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medicine.diagnostic_test ,business.industry ,Computer science ,food and beverages ,Image processing ,Computed tomography ,Pattern recognition ,04 agricultural and veterinary sciences ,02 engineering and technology ,Pattern recognition (psychology) ,040103 agronomy & agriculture ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,0401 agriculture, forestry, and fisheries ,020201 artificial intelligence & image processing ,Artificial intelligence ,business - Abstract
Paddy cultivation plays an important role in agriculture. But the growth of crop is affected by various diseases. If detection of disease is not properly done at earlier stage, then it may result in decrease of paddy production. India is agriculture based country and it provides employment to peoples in rural areas.. The agricultural sector plays major role in development of our economy by providing employment for rural peoples. Paddy is the staple food of Indians and hence it is considered as nation’s important product. Crop management is followed to protect paddy plants from fungal and bacterial diseases. The main goal is to develop an image processing system to identify and classify the various diseases affecting the growth of paddy plants. The work is divided into two parts paddy crop disease detection and recognition of paddy crop diseases. Disease detection technique is used to detect the disease affected portion in the paddy plant. The techniques used to detect diseased portions of paddy crop are Boundary localization and Haar-like features methods and neural network is employed based on diseases classification.
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- 2018
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28. The conception of the ABCD study: From substance use to a broad NIH collaboration
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William T. Riley, Antonio Noronha, Gayathri J. Dowling, Diana W. Bianchi, Joshua A. Gordon, Walter J. Koroshetz, Glen D. Morgan, Eliseo J. Pérez-Stable, Kevin P. Conway, Susan R.B. Weiss, Robert T. Croyle, John A. Matochik, Katia D. Howlett, Kenneth R. Warren, George F. Koob, Michele Bloch, Catherine Y. Spong, Eric M. Wargo, Margaret M. Murray, Bethany Griffin Deeds, Nora D. Volkow, and Steven Grant
- Subjects
0301 basic medicine ,Value (ethics) ,Longitudinal study ,medicine.medical_specialty ,Adolescent ,Substance-Related Disorders ,Cognitive Neuroscience ,Brain Structure and Function ,Neuroimaging ,Article ,Developmental psychology ,03 medical and health sciences ,0302 clinical medicine ,Cognition ,medicine ,Cognitive development ,Humans ,Longitudinal Studies ,Public health ,lcsh:QP351-495 ,Brain ,Adolescent Development ,Mental illness ,medicine.disease ,Mental health ,United States ,030104 developmental biology ,lcsh:Neurophysiology and neuropsychology ,National Institutes of Health (U.S.) ,Informatics ,Female ,Psychology ,030217 neurology & neurosurgery ,Clinical psychology - Abstract
Adolescence is a time of dramatic changes in brain structure and function, and the adolescent brain is highly susceptible to being altered by experiences like substance use. However, there is much we have yet to learn about how these experiences influence brain development, how they promote or interfere with later health outcomes, or even what healthy brain development looks like. A large longitudinal study beginning in early adolescence could help us understand the normal variability in adolescent brain and cognitive development and tease apart the many factors that influence it. Recent advances in neuroimaging, informatics, and genetics technologies have made it feasible to conduct a study of sufficient size and scope to answer many outstanding questions. At the same time, several Institutes across the NIH recognized the value of collaborating in such a project because of its ability to address the role of biological, environmental, and behavioral factors like gender, pubertal hormones, sports participation, and social/economic disparities on brain development as well as their association with the emergence and progression of substance use and mental illness including suicide risk. Thus, the Adolescent Brain Cognitive Development study was created to answer the most pressing public health questions of our day. Keywords: Adolescent, Brain development, Neuroimaging, Longitudinal, Substance use, Mental health
- Published
- 2018
29. Performance of Indian Mutual Fund Schemes
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Gayathri J and Manivannan Babu
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Management of Technology and Innovation ,General Engineering - Abstract
Risk, diversification, features of investment avenues, and tax benefit are the factors considered by the investors in their decision making. The convenience of investing in small proportions and tax benefits attracts the investors towards mutual fund investments. The studies prove that market timing ability of fund managers drives the mutual fund scheme performance. This assessment of the above factors would help to the investors in their choice of mutual funds. 36 Indian Mutual Funds Schemes were assessed using the Sharpe, Treynor, Jensen’s measure from January to June 2019. L&T Liquid Fund –Direct (Growth), L&T Low Duration Fund-Growth and Edelweiss Large Cap Fund - Direct (Growth) performed well.
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- 2019
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30. Adolescent Brain Cognitive Development (ABCD) study Linked External Data (LED): Protocol and practices for geocoding and assignment of environmental data
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M Deanna, Chun Chieh Fan, Elizabeth R. Sowell, Harry R. Smolker, Andrew T. Marshall, Wesley K. Thompson, Marybel Robledo Gonzalez, Carlos Cardenas-Iniguez, Gayathri J. Dowling, Megan M. Herting, Susan F. Tapert, and Jessica Ross
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Neurophysiology and neuropsychology ,Pediatric Research Initiative ,Built environment ,Geospatial analysis ,Knowledge management ,Adolescent ,PII, Personal Identifiable Information ,Cognitive Neuroscience ,Clinical Sciences ,Geographic Mapping ,Public policy ,Context (language use) ,Review ,CT, U.S. Census Bureau Census Tract ,computer.software_genre ,Basic Behavioral and Social Science ,DAIRC, Data Analytic and Information Resource Center ,Environmental data ,Environmental neuroscience ,Cognition ,Residence Characteristics ,LED, Linked External Data ,Behavioral and Social Science ,Cognitive development ,Humans ,Workgroup ,Child ,Natural environment ,CDC, Centers for Disease Control and Prevention ,Pediatric ,Protocol (science) ,Neighborhood ,business.industry ,QP351-495 ,Prevention ,Neurosciences ,Brain ,Adolescent Development ,ACS, American Community Survey ,Brain Disorders ,Mental Health ,Environmental health ,Geocoding ,ABCD, Adolescent Brain Cognitive Development ,Cognitive Sciences ,business ,Psychology ,computer - Abstract
Our brain is constantly shaped by our immediate environments, and while some effects are transient, some have long-term consequences. Therefore, it is critical to identify which environmental risks have evident and long-term impact on brain development. To expand our understanding of the environmental context of each child, the Adolescent Brain Cognitive Development (ABCD) Study® incorporates the use of geospatial location data to capture a range of individual, neighborhood, and state level data based on the child’s residential location in order to elucidate the physical environmental contexts in which today’s youth are growing up. We review the major considerations and types of geocoded information incorporated by the Linked External Data Environmental (LED) workgroup to expand on the built and natural environmental constructs in the existing and future ABCD Study data releases. Understanding the environmental context of each youth furthers the consortium’s mission to understand factors that may influence individual differences in brain development, providing the opportunity to inform public policy and health organization guidelines for child and adolescent health., Highlights • ABCD Study® includes a Linked External Data (LED) Environmental working group. • Residential geocodes linked to physical environmental contextual variables. • External data sources include residential, census, and state-level variables. • These data may allow for important gene-by-environment effects to be examined.
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- 2021
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31. Histopathological overview of cystoscopic bladder biopsies- A retrospective analysis
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Suba G, Jayaprakash Ht, and Gayathri J
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medicine.medical_specialty ,business.industry ,Retrospective analysis ,Medicine ,Radiology ,business - Published
- 2017
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32. Nutritional Awareness for Denture Wearers
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Gayathri. J and Sameera Ashiqa Sathik
- Abstract
Proper nutrition is essential for the health of every individual. Thisincludes the denture wearers’ as well. Proper advice and knowledge must be given to the denture wearers by the dentist for maintaining the essential health of the individuals
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- 2020
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33. Ensuring the Best Use of Data: The Adolescent Brain Cognitive Development Study
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Gayathri J. Dowling, Wilson M. Compton, and Hugh Garavan
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Text mining ,business.industry ,Pediatrics, Perinatology and Child Health ,Cognitive development ,Medicine ,business ,Article ,Cognitive psychology - Published
- 2019
34. Foreword
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Nora D. Volkow, Michelle P. Freund, and Gayathri J. Dowling
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Cellular and Molecular Neuroscience ,Endocrinology ,Articles from the Special Issue on Stress and substance abuse throughout development ,Edited by Roger Sorensen, Da-Yu Wu, Karen Sirocco, Cora lee Wetherington and Rita Valentino ,Endocrine and Autonomic Systems ,Physiology ,Molecular Biology ,Biochemistry - Published
- 2019
35. Proteomic investigation reveals dominant alterations of neutrophil degranulation and mRNA translation pathways in patients with COVID-19
- Author
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Apoorva Badaya, Viswanthram Palanivel, Alisha Srivastava, Ayushi Verma, Amrita Mukherjee, Renuka Bankar, Deeptarup Biswas, Saicharan Ghantasala, Sachee Agrawal, Avinash Kumar Singh, Medha Gayathri J Pai, Arghya Banerjee, Om Shrivastav, Akanksha Salkar, Kruthi Suvarna, Jayanthi Shastri, Sanjeeva Srivastava, Manisha Choudhury, and Jyotirmoy Roy
- Subjects
0301 basic medicine ,specimen ,Multidisciplinary ,biology ,Coronavirus disease 2019 (COVID-19) ,Translation (biology) ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Proteomics ,Cell biology ,Ferritin ,03 medical and health sciences ,proteomics ,030104 developmental biology ,Downregulation and upregulation ,biology.protein ,Neutrophil degranulation ,molecular biology ,lcsh:Q ,In patient ,Signal transduction ,lcsh:Science ,0210 nano-technology - Abstract
Summary: The altered molecular proteins and pathways in response to COVID-19 infection are still unclear. Here, we performed a comprehensive proteomics-based investigation of nasopharyngeal swab samples from patients with COVID-19 to study the host response by employing simple extraction strategies. Few of the host proteins such as interleukin-6, L-lactate dehydrogenase, C-reactive protein, Ferritin, and aspartate aminotransferase were found to be upregulated only in COVID-19-positive patients using targeted multiple reaction monitoring studies. The most important pathways identified by enrichment analysis were neutrophil degranulation, interleukin-12 signaling pathways, and mRNA translation of proteins thus providing the detailed investigation of host response in COVID-19 infection. Thus, we conclude that mass spectrometry-detected host proteins have a potential for disease severity progression; however, suitable validation strategies should be deployed for the clinical translation. Furthermore, the in silico docking of potential drugs with host proteins involved in the interleukin-12 signaling pathway might aid in COVID-19 therapeutic interventions.
- Published
- 2021
- Full Text
- View/download PDF
36. Image processing and analysis methods for the Adolescent Brain Cognitive Development Study
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Joseph T. Sakai, Amanda Sheffield Morris, Joel L. Steinberg, Michael C. Neale, Kilian M. Pohl, Wesley K. Thompson, Gayathri J. Dowling, Nicholas Allgaier, David A. Lewis, Masha Y. Ivanova, R. Todd Constable, Erin McGlade, Marie T. Banich, Naomi P. Friedman, Mariana Sanchez, Linda B. Cottler, Aimee Goldstone, Tufikameni Brima, Linda Chang, Susan Y. Bookheimer, Christine C. Cloak, Hauke Bartsch, Steve Heeringa, Roger Little, Rebekah S. Huber, Daniel W. Mruzek, Andrew S. Nencka, Anthony Steven Dick, Luke W. Hyde, Lindsay M. Squeglia, Elizabeth R. Sowell, Thomas Ernst, Anders Perrone, Julie A. Dumas, Adolf Pfefferbaum, Andrew P. Prescot, M. Alejandra Infante, Jay N. Giedd, John M. Hettema, Fiona C. Baker, John E. Schulenberg, B. J. Casey, Martin P. Paulus, Steven Grant, Leo P. Sugrue, Christian J. Hopfer, Monica Luciana, Anders M. Dale, Paul Florsheim, Antonio Noronha, Kara Bagot, Jody Tanabe, Beatriz Luna, James M. Bjork, Raul Gonzalez, Michael E. Charness, Carolina Makowski, Carlo Pierpaoli, Sara Jo Nixon, John J. Foxe, Devin Prouty, Florence J. Breslin, Robert A. Zucker, Michael C. Riedel, Richard Watts, Angela R. Laird, Eric Earl, Andrey P. Anokhin, Edward G. Freedman, Perry F. Renshaw, Sarah W. Feldstein Ewing, Christopher J. Pung, Claudiu Schirda, Meyer D. Glantz, Oscar Miranda-Dominguez, Marsha F. Lopez, Paul E.A. Glaser, Bonnie J. Nagel, Jazmin Diaz, John K. Hewitt, Deborah A. Yurgelun-Todd, Mirella Dapretto, Elizabeth Hoffman, Damien A. Fair, Rebecca DelCarmen-Wiggins, Hugh Garavan, Monica D. Rosenberg, Andrew C. Heath, Michael P. Harms, Gloria Reeves, Will M. Aklin, Andre van der Kouwe, Jonathan R. Polimeni, Samuel W. Hawes, Joshua M. Kuperman, Kristina A. Uban, Chelsea S. Sicat, Christine L. Larson, Paul D. Shilling, W. Kyle Simmons, Kevin Patrick, Susan F. Tapert, Chandra Sripada, Thanh T. Trinh, Terry L. Jernigan, Susan R.B. Weiss, Mary M. Heitzeg, Donald J. Hagler, Michael J. Mason, Krista M. Lisdahl, Dana L. Wolff-Hughes, Vani Pariyadath, Bernard F. Fuemmeler, Megan M. Herting, M. Daniela Cornejo, Matthew T. Sutherland, Sean N. Hatton, Mary E. Soules, Laura Hilmer, Kevin M. Gray, Sandra A. Brown, Alexandra Potter, Ruben P. Alvarez, Rahul S. Desikan, William G. Iacono, Kevin P. Conway, Joanna Jacobus, John A. Matochik, Duncan B. Clark, Pamela A. F. Madden, Arielle R. Baskin-Sommers, Feng Xue, Octavio Ruiz de Leon, David N. Kennedy, Jerzy Bodurka, Finnegan J. Calabro, Scott Peltier, Darrick Sturgeon, Katia D. Howlett, M Deanna, Yi Li, and Adriana Galván
- Subjects
Cognition ,030218 nuclear medicine & medical imaging ,Functional imaging ,03 medical and health sciences ,0302 clinical medicine ,Neuroimaging ,Informatics ,Cognitive development ,Brain segmentation ,Psychology ,030217 neurology & neurosurgery ,Diffusion MRI ,Psychopathology ,Cognitive psychology - Abstract
The Adolescent Brain Cognitive Development (ABCD) Study is an ongoing, nationwide study of the effects of environmental influences on behavioral and brain development in adolescents. The ABCD Study is a collaborative effort, including a Coordinating Center, 21 data acquisition sites across the United States, and a Data Analysis and Informatics Center (DAIC). The main objective of the study is to recruit and assess over eleven thousand 9-10-year-olds and follow them over the course of 10 years to characterize normative brain and cognitive development, the many factors that influence brain development, and the effects of those factors on mental health and other outcomes. The study employs state-of-the-art multimodal brain imaging, cognitive and clinical assessments, bioassays, and careful assessment of substance use, environment, psychopathological symptoms, and social functioning. The data will provide a resource of unprecedented scale and depth for studying typical and atypical development. Here, we describe the baseline neuroimaging processing and subject-level analysis methods used by the ABCD DAIC in the centralized processing and extraction of neuroanatomical and functional imaging phenotypes. Neuroimaging processing and analyses include modality-specific corrections for distortions and motion, brain segmentation and cortical surface reconstruction derived from structural magnetic resonance imaging (sMRI), analysis of brain microstructure using diffusion MRI (dMRI), task-related analysis of functional MRI (fMRI), and functional connectivity analysis of resting-state fMRI.HighlightsAn overview of the MRI processing pipeline for the ABCD StudyA discussion on the challenges of large, multisite population studiesA methodological reference for users of publicly shared data from the ABCD Study
- Published
- 2018
- Full Text
- View/download PDF
37. Stress exposures, neurodevelopment and health measures in the ABCD study
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Gayathri J. Dowling, James J. Hudziak, Natalia Orendain, Elizabeth A. Hoffman, Lindsay M. Squeglia, and Duncan B. Clark
- Subjects
Articles from the Special Issue on Stress and substance abuse throughout development ,Edited by Roger Sorensen, Da-Yu Wu, Karen Sirocco, Cora lee Wetherington and Rita Valentino ,Adolescent ,Physiology ,media_common.quotation_subject ,Psychological intervention ,Context (language use) ,Development ,Stress ,Biochemistry ,lcsh:RC346-429 ,lcsh:RC321-571 ,Neglect ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Endocrinology ,Functional neuroimaging ,Cognitive development ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Molecular Biology ,lcsh:Neurology. Diseases of the nervous system ,media_common ,Endocrine and Autonomic Systems ,Addiction ,lcsh:QP351-495 ,Mental health ,030227 psychiatry ,lcsh:Neurophysiology and neuropsychology ,Psychology ,Neurocognitive ,030217 neurology & neurosurgery ,Clinical psychology - Abstract
The Adolescent Brain Cognitive Development (ABCD) Study, a large, longitudinal study of brain development and child health, is uniquely positioned to explore relationships among stress, neurodevelopment, and psychiatric symptomatology, including substance use and addiction. There is much we do not know about how adverse experiences affect the developing brain and cognitive, social, emotional, and academic outcomes. The data collected by the ABCD Study will allow the examination of the relationships among these variables in adolescence, including the effects of stressors (e.g., abuse, neglect, household challenges, parental substance use) on psychological adjustment and other stress responses. A comprehensive protocol that includes physical and mental health, substance use, culture and environment, neurocognitive assessments, biospecimen analyses, and structural and functional neuroimaging will provide opportunities for learning about the impacts of stressors on health and other outcomes in the context of adolescent development. This knowledge could lead to the development of interventions that reduce or even reverse the impacts of stressors. Keywords: Adolescent, Development, Stress
- Published
- 2018
38. Approaching Retention within the ABCD Study
- Author
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Gayathri J. Dowling, Linda B. Cottler, Sarah W. Feldstein Ewing, Sandra A. Brown, Susan F. Tapert, and Linda Chang
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Male ,Pediatric Research Initiative ,Adolescent ,Multi-site ,Cognitive Neuroscience ,Clinical Sciences ,Adolescents ,Article ,Developmental psychology ,Child and adolescent ,03 medical and health sciences ,0302 clinical medicine ,Cognition ,Risk Factors ,Behavioral and Social Science ,Cognitive development ,Humans ,Psychology ,Generalizability theory ,030212 general & internal medicine ,Longitudinal Studies ,Child ,High rate ,Pediatric ,lcsh:QP351-495 ,Multi site ,Neurosciences ,Retention, Psychology ,Brain ,Adolescent Development ,lcsh:Neurophysiology and neuropsychology ,Retention ,ABCD study ,Longitudinal ,Cognitive Sciences ,030217 neurology & neurosurgery - Abstract
Retention efforts are critical to maintain relationships with research participants over time. This is especially important for the Adolescent Brain Cognitive Development (ABCD) study, where families are asked to stay engaged with the study throughout the course of 10 years. This high-degree of involvement is essential to longitudinally track child and adolescent development. At a minimum, we will connect with families every 6 months by telephone, and every year in person, with closer contact with the youth directly as they transition into adolescence. Differential retention, when related to non-random issues pertaining to demographic or risk features, can negatively impact the generalizability of study outcomes. Thus, to ensure high rates of retention for all participants, the ABCD study employs a number of efforts to support youth and families. This overview details the framework and concrete steps for retention. Keywords: ABCD study, Adolescents, Retention, Longitudinal, Multi-site
- Published
- 2018
- Full Text
- View/download PDF
39. Outreach and Innovation: Communication Strategies for the ABCD Study
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Katia D. Howlett, Elizabeth A. Hoffman, Florence J. Breslin, and Gayathri J. Dowling
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Male ,Longitudinal study ,Medical education ,Brain development ,Adolescent ,Cognitive Neuroscience ,Communication ,lcsh:QP351-495 ,Brain ,Adolescent Development ,Child health ,Article ,Outreach ,03 medical and health sciences ,0302 clinical medicine ,lcsh:Neurophysiology and neuropsychology ,Cognition ,Cognitive development ,Humans ,Female ,030212 general & internal medicine ,Longitudinal Studies ,Psychology ,Child ,030217 neurology & neurosurgery - Abstract
The Adolescent Brain Cognitive Development (ABCD) Study, a large, longitudinal study of brain development and child health, relies on the engagement of communities, educators, and families to ensure its success. To that end, community and partner relationships, development of targeted messages and materials for specific audiences (educators, families, youth, scientists), and continued and consistent outreach must be an integral part of the Consortium activities. The ABCD Consortium has made these efforts a priority and developed a framework to raise awareness about the study and promote sustained broad-base support from diverse stakeholders. Keywords: Adolescent, Development, Communication, Outreach, Engagement
- Published
- 2018
40. The Adolescent Brain Cognitive Development Study
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Terry L. Jernigan, Gayathri J. Dowling, and Sandra A. Brown
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0301 basic medicine ,Cultural Studies ,Social Work ,Adolescent ,Substance-Related Disorders ,MEDLINE ,Developmental & Child Psychology ,Neuroimaging ,Genetics, Behavioral ,Genome ,Article ,03 medical and health sciences ,Behavioral Neuroscience ,0302 clinical medicine ,Text mining ,Cognition ,Developmental and Educational Psychology ,Cognitive development ,Genetics ,Psychology ,Humans ,Longitudinal Studies ,Child ,Behavioral ,business.industry ,Brain ,Adolescent Development ,United States ,030104 developmental biology ,Phenotype ,Observational study ,business ,030217 neurology & neurosurgery ,Social Sciences (miscellaneous) ,Biomarkers ,Clinical psychology - Published
- 2018
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- View/download PDF
41. A description of the ABCD organizational structure and communication framework
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Terry L. Jernigan, Sandra A. Brown, Susan F. Tapert, Charles J. Heyser, Paul D. Shilling, Allison M. Auchter, Margie Hernandez Mejia, and Gayathri J. Dowling
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Knowledge management ,Adolescent ,Cognitive Neuroscience ,Clinical Sciences ,Neuroimaging ,Development ,Basic Behavioral and Social Science ,Matrix management ,050105 experimental psychology ,Child health ,Article ,03 medical and health sciences ,0302 clinical medicine ,Cognition ,Clinical Research ,Behavioral and Social Science ,Cognitive development ,Organizational framework ,Humans ,0501 psychology and cognitive sciences ,Organizational theory ,Dissemination ,Pediatric ,Structure (mathematical logic) ,Governance ,business.industry ,Corporate governance ,Communication ,05 social sciences ,lcsh:QP351-495 ,Neurosciences ,Brain ,Adolescent Development ,Adolescence ,lcsh:Neurophysiology and neuropsychology ,Longitudinal ,Cognitive Sciences ,Organizational structure ,business ,Psychology ,030217 neurology & neurosurgery - Abstract
The Adolescent Brain Cognitive Development (ABCD) study is designed to be the largest study of brain development and child health in the United States, performing comprehensive assessments of 11,500 children repeatedly for 10 years. An endeavor of this magnitude requires an organized framework of governance and communication that promotes collaborative decision-making and dissemination of information. The ABCD consortium structure, built upon the Matrix Management approach of organizational theory, facilitates the integration of input from all institutions, numerous internal workgroups and committees, federal partners, and external advisory groups to make use of a broad range of expertise to ensure the study’s success. Keywords: Adolescence, Development, Neuroimaging, Longitudinal, Organizational framework, Governance
- Published
- 2017
- Full Text
- View/download PDF
42. Image processing and analysis methods for the Adolescent Brain Cognitive Development Study
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Kara Bagot, Finnegan J. Calabro, Julie A. Dumas, Leo P. Sugrue, Christian J. Hopfer, Scott Peltier, Steven Grant, Beatriz Luna, James M. Bjork, Alexandra Potter, Darrick Sturgeon, Adolf Pfefferbaum, Devin Prouty, Florence J. Breslin, Michael C. Riedel, Perry F. Renshaw, Andrew P. Prescot, Aimee Goldstone, Thanh T. Trinh, Oscar Miranda-Dominguez, Hugh Garavan, Susan Y. Bookheimer, Roger Little, Luke W. Hyde, Hermine H. Maes, Michael P. Harms, Christopher J. Pung, Mary E. Soules, Laura Hilmer, David A. Lewis, Kevin M. Gray, Sean N. Hatton, John M. Hettema, Katia D. Howlett, Masha Y. Ivanova, Jonathan R. Polimeni, B. J. Casey, Antonio Noronha, M Deanna, Yi Li, John K. Hewitt, Jay N. Giedd, Deborah A. Yurgelun-Todd, Carolina Makowski, Michael E. Charness, Chandra Sripada, Anthony Steven Dick, Sandra A. Brown, Paul D. Shilling, Fiona C. Baker, Lindsay M. Squeglia, Anders M. Dale, Paul Florsheim, Terry L. Jernigan, Susan R.B. Weiss, Steve Heeringa, Damien A. Fair, Sarah W. Feldstein Ewing, John J. Foxe, Raul Gonzalez, Daniel W. Mruzek, Amanda Sheffield Morris, Joel L. Steinberg, Michael C. Neale, Adriana Galván, Andrew C. Heath, Matthew T. Sutherland, Kevin Patrick, Christine L. Larson, Gayathri J. Dowling, Andrey P. Anokhin, Krista M. Lisdahl, Susan F. Tapert, Kilian M. Pohl, Wesley K. Thompson, Martin P. Paulus, Joshua M. Kuperman, Dana L. Wolff-Hughes, Carlo Pierpaoli, Mirella Dapretto, Rebecca DelCarmen-Wiggins, Donald J. Hagler, Michael J. Mason, Marie T. Banich, Bernard F. Fuemmeler, Naomi P. Friedman, Robert A. Zucker, Linda B. Cottler, M. Daniela Cornejo, Mariana Sanchez, Eric Earl, Andrew S. Nencka, Edward G. Freedman, Christine C. Cloak, Claudiu Schirda, W. Kyle Simmons, Jody Tanabe, Thomas Ernst, Paul E.A. Glaser, Gloria Reeves, M. Alejandra Infante, Elizabeth R. Sowell, Bonnie J. Nagel, Richard Watts, Angela R. Laird, Meyer D. Glantz, Anders Perrone, Jazmin Diaz, Tufikameni Brima, Mary M. Heitzeg, Vani Pariyadath, Rahul S. Desikan, Joseph T. Sakai, Linda Chang, Sara Jo Nixon, Megan M. Herting, Rebekah S. Huber, William G. Iacono, Samuel W. Hawes, Marsha F. Lopez, Monica D. Rosenberg, Arielle R. Baskin-Sommers, Feng Xue, Kevin P. Conway, John A. Matochik, Pamela A. F. Madden, Joanna Jacobus, Duncan B. Clark, Elizabeth Hoffman, Will M. Aklin, Andre van der Kouwe, Ruben P. Alvarez, Kristina A. Uban, Chelsea S. Sicat, Nicholas Allgaier, Erin McGlade, Hauke Bartsch, Octavio Ruiz de Leon, David N. Kennedy, R. Todd Constable, Jerzy Bodurka, John E. Schulenberg, and Monica Luciana
- Subjects
Adolescent ,Cognitive Neuroscience ,Multimodal Imaging ,Article ,050105 experimental psychology ,03 medical and health sciences ,0302 clinical medicine ,Neuroimaging ,Image Processing, Computer-Assisted ,Cognitive development ,medicine ,Humans ,Brain segmentation ,0501 psychology and cognitive sciences ,Brain Mapping ,medicine.diagnostic_test ,05 social sciences ,Brain ,Signal Processing, Computer-Assisted ,Cognition ,Magnetic resonance imaging ,Adolescent Development ,Magnetic Resonance Imaging ,Mental health ,Diffusion Magnetic Resonance Imaging ,Neurology ,Psychology ,030217 neurology & neurosurgery ,Cognitive psychology ,Psychopathology ,Diffusion MRI - Abstract
The Adolescent Brain Cognitive Development (ABCD) Study is an ongoing, nationwide study of the effects of environmental influences on behavioral and brain development in adolescents. The main objective of the study is to recruit and assess over eleven thousand 9–10-year-olds and follow them over the course of 10 years to characterize normative brain and cognitive development, the many factors that influence brain development, and the effects of those factors on mental health and other outcomes. The study employs state-of-the-art multimodal brain imaging, cognitive and clinical assessments, bioassays, and careful assessment of substance use, environment, psychopathological symptoms, and social functioning. The data is a resource of unprecedented scale and depth for studying typical and atypical development. The aim of this manuscript is to describe the baseline neuroimaging processing and subject-level analysis methods used by ABCD. Processing and analyses include modality-specific corrections for distortions and motion, brain segmentation and cortical surface reconstruction derived from structural magnetic resonance imaging (sMRI), analysis of brain microstructure using diffusion MRI (dMRI), task-related analysis of functional MRI (fMRI), and functional connectivity analysis of resting-state fMRI. This manuscript serves as a methodological reference for users of publicly shared neuroimaging data from the ABCD Study.
- Published
- 2019
- Full Text
- View/download PDF
43. Socioeconomic adversity and risk of lead exposure is associated with brain and cognitive development in the Adolescent Brain Cognitive Development (ABCD) study
- Author
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Elizabeth R. Sowell, Chun Chieh Fan, Bruce P. Lanphear, Thompson Wk, Gayathri J. Dowling, Rob McConnell, Andrew T. Marshall, and Betts S
- Subjects
Global and Planetary Change ,Epidemiology ,business.industry ,Health, Toxicology and Mutagenesis ,Lead exposure ,Public Health, Environmental and Occupational Health ,Cognitive development ,Medicine ,business ,Pollution ,Socioeconomic status ,Clinical psychology - Published
- 2019
- Full Text
- View/download PDF
44. Mathematical Modelling of Ultrasonic System for Riverbed Identification and Classification
- Author
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N. Dayakar, Haneesh Sankar T P, and Soorya Gayathri J
- Subjects
010505 oceanography ,business.industry ,Identification (biology) ,Pattern recognition ,Ultrasonic sensor ,Artificial intelligence ,business ,01 natural sciences ,Geology ,0105 earth and related environmental sciences - Published
- 2016
- Full Text
- View/download PDF
45. Tumor-specific peptide-based vaccines containing the conformationally biased, response-selective C5a agonists EP54 and EP67 protect against aggressive large B cell lymphoma in a syngeneic murine model
- Author
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Sam D. Sanderson, Shantaram S. Joshi, Tara M. Nordgren, Gayathri J. Kollessery, and Amit K. Mittal
- Subjects
Lymphoma, B-Cell ,Protein Conformation ,Complement C5a ,Tumor Specific Peptide ,Biology ,Lymphocyte Activation ,Cancer Vaccines ,Epitope ,Mice ,Immune system ,Antigen ,Cell Line, Tumor ,hemic and lymphatic diseases ,medicine ,Animals ,Humans ,Cytotoxic T cell ,B-cell lymphoma ,Antigen-presenting cell ,Mice, Inbred BALB C ,General Veterinary ,General Immunology and Microbiology ,Public Health, Environmental and Occupational Health ,medicine.disease ,Survival Analysis ,Peptide Fragments ,Disease Models, Animal ,Transplantation, Isogeneic ,Treatment Outcome ,Infectious Diseases ,Vaccines, Subunit ,Immunology ,Molecular Medicine ,CD8 ,T-Lymphocytes, Cytotoxic - Abstract
Vaccines to large B cell lymphoma were made by the covalent attachment of an epitope from the gp70 glycoprotein (SSWDFITV) to the N-termini of the conformationally biased, response-selective C5a agonists EP54 (YSFKPMPLaR) and EP67 (YSFKDMP(MeL)aR). Syngeneic Balb/c mice were immunized with these EP54/EP67-containing vaccines and challenged with a lethal dose of the highly liver metastatic and gp70-expressing lymphoma cell line RAW117-H10 to evaluate the ability of these vaccines to induce protective immune outcomes. All mice immunized with SSWDFITVRRYSFKPMPLaR (Vaccine 2) and SSWDFITVRRYSFKDMP(MeL)aR (Vaccine 3) were protected to a lethal challenge of RAW117-H10 lymphoma (170 days survival) and exhibited no lymphoma infiltration or solid tumor nodules in the liver relative to unvaccinated controls (18 days survival). Vaccines 2 and 3 contained the protease-sensitive double-Arg (RR) linker sequence between the epitope and the EP54/EP67 moieties in order to provide a site for intracellular proteases to separate the epitope from the EP54/EP67 moieties once internalized by the APC and, consequently, enhance epitope presentation in the context of MHC I/II. These protected mice exhibited an immune outcome consistent with increased involvement of CD8(+) and/or CD4(+) T lymphocytes relative to controls and mice that did not survive or showed low survival rates as with Vaccines 1 and 4, which lacked the RR linker sequence. CD8(+) T lymphocytes activated in response to Vaccines 2 and 3 express cytotoxic specificity for gp70-expressing RAW117-H10 lymphoma cells, but not antigen-irrelevant MDA-MB231A human breast cancer cells. Results are discussed against the backdrop of the ability of EP54/EP67 to selectively target antigens to and activate C5a receptor-bearing antigen presenting cells and the prospects of using such vaccines therapeutically against lymphoma and other cancers.
- Published
- 2011
- Full Text
- View/download PDF
46. Gender effects on drug use, abuse, and dependence: A special analysis of results from the national survey on drug use and health
- Author
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Susan R.B. Weiss, Gayathri J. Dowling, Jessica H. Cotto, Jennifer C. Elcano, Anna B. Staton, and Elisabeth Davis
- Subjects
Adult ,Male ,Drug ,Marijuana Abuse ,medicine.medical_specialty ,Adolescent ,media_common.quotation_subject ,MEDLINE ,Gender Studies ,Cocaine-Related Disorders ,Young Adult ,Age Distribution ,Sex Factors ,medicine ,Humans ,Risk factor ,Medical prescription ,Young adult ,Child ,Psychiatry ,media_common ,Psychotropic Drugs ,business.industry ,Addiction ,Public health ,General Medicine ,medicine.disease ,Health Surveys ,United States ,Substance abuse ,Alcoholism ,Female ,business - Abstract
Gender is increasingly being studied for risk and protective factors underlying substance abuse and addiction.The aim of this study was to assess gender differences in rates of substance abuse and dependence among drug users.A national population sample was examined, focusing on 2 age groups (youths, aged 12-17 years, and young adults, aged 18-25 years) and several commonly abused substances (alcohol, marijuana, and nonmedical prescription medication use). Combined annual data from the National Survey on Drug Use and Health (NSDUH), aggregated from 2002-2005, were used for gender comparisons of rates of substance use, as well as abuse and dependence, among users.Overall rates of substance use were significantly higher for males than for females (P0.01 for all substances except sedatives and tranquilizers); however, patterns of use, abuse, or dependence among users differed by age group and drug. Interestingly, patterns for youths differed from the overall population and from young adults. Girls exceeded boys in their use of alcohol (P0.01) and their nonmedical use of psychotherapeutics (ie, prescription-type pain relievers, stimulants, tranquilizers, sedatives) (P0.01); among users, girls were significantly more likely to be dependent on the latter (P0.01). Boys reported significantly greater use and abuse of and dependence on marijuana (P0.01). In the young adults, the proportion of female users reporting dependence on cocaine or psychotherapeutics was significantly higher than for male users (P0.01), who nonetheless reported significantly greater use of these drugs (P0.01). Among users, males generally exceeded females in meeting abuse criteria (P0.01 for marijuana among 12- to 17-year-olds and for alcohol, marijuana, and psychotherapeutics among 18- to 25-year-olds), with some exceptions mainly in the youngest cohort.In this national population sample of youths and young adults, these findings suggest that gender, age, and substance of abuse may all play a role in the observed patterns of drug use, abuse, and dependence. Understanding the reasons for these differences and continuing to evaluate these patterns over time could help in the development of targeted and more effective prevention and treatment interventions.
- Published
- 2010
- Full Text
- View/download PDF
47. Hedgehog-Induced Survival of B-Cell Chronic Lymphocytic Leukemia Cells in a Stromal Cell Microenvironment: A Potential New Therapeutic Target
- Author
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Katy Emanuel, Julie M. Vose, Robert G. Bociek, Dennis D. Weisenburger, Philip J. Bierman, Gayathri J. Kollessery, John D. Dickinson, Amit K. Mittal, Katie J. Peterson, Ganapati V. Hegde, Avadhut D. Joshi, and Shantaram S. Joshi
- Subjects
Cancer Research ,Stromal cell ,Cyclopamine ,Cell Survival ,Chronic lymphocytic leukemia ,Antineoplastic Agents ,Apoptosis ,Cell Communication ,Zinc Finger Protein GLI1 ,Oligodeoxyribonucleotides, Antisense ,chemistry.chemical_compound ,immune system diseases ,GLI1 ,hemic and lymphatic diseases ,medicine ,Humans ,Hedgehog Proteins ,neoplasms ,Molecular Biology ,Tumor microenvironment ,biology ,Gene Expression Regulation, Leukemic ,Cell growth ,Gene Expression Profiling ,medicine.disease ,Leukemia, Lymphocytic, Chronic, B-Cell ,Leukemia ,medicine.anatomical_structure ,Oncology ,chemistry ,biology.protein ,Cancer research ,Bone marrow ,Stromal Cells ,Cell Division ,Vidarabine ,Signal Transduction ,Transcription Factors - Abstract
B-cell chronic lymphocytic leukemia (B-CLL) is characterized by an accumulation of neoplastic B cells due to their resistance to apoptosis and increased survival. Among various factors, the tumor microenvironment is known to play a role in the regulation of cell proliferation and survival of many cancers. However, it remains unclear how the tumor microenvironment contributes to the increased survival of B-CLL cells. Therefore, we studied the influence of bone marrow stromal cell–induced hedgehog (Hh) signaling on the survival of B-CLL cells. Our results show that a Hh signaling inhibitor, cyclopamine, inhibits bone marrow stromal cell–induced survival of B-CLL cells, suggesting a role for Hh signaling in the survival of B-CLL cells. Furthermore, gene expression profiling of primary B-CLL cells (n = 48) indicates that the expression of Hh signaling molecules, such as GLI1, GLI2, SUFU, and BCL2, is significantly increased and correlates with disease progression of B-CLL patients with clinical outcome. In addition, SUFU and GLI1 transcripts, as determined by real-time PCR, are significantly overexpressed and correlate with adverse indicators of clinical outcome in B-CLL patients, such as cytogenetics or CD38 expression. Furthermore, selective down-regulation of GLI1 by antisense oligodeoxynucleotides (GLI1-ASO) results in decreased BCL2 expression and cell survival, suggesting that GLI1 may regulate BCL2 and, thereby, modulate cell survival in B-CLL. In addition, there was significantly increased apoptosis of B-CLL cells when cultured in the presence of GLI1-ASO and fludarabine. Together, these results reveal that Hh signaling is important in the pathogenesis of B-CLL and, hence, may be a potential therapeutic target. (Mol Cancer Res 2008;6(12):1928–36)
- Published
- 2008
- Full Text
- View/download PDF
48. Drugs of Abuse and the Aging Brain
- Author
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Susan R.B. Weiss, Gayathri J. Dowling, and Timothy P. Condon
- Subjects
Senescence ,Drugs of abuse ,medicine.medical_specialty ,Substance-Related Disorders ,media_common.quotation_subject ,Neurotoxins ,Population ,Comorbidity ,medicine ,Humans ,Aging brain ,Medical prescription ,education ,Psychiatry ,Brain function ,Aged ,media_common ,Pharmacology ,Neurotransmitter Agents ,education.field_of_study ,Incidence ,Addiction ,Brain ,Middle Aged ,medicine.disease ,United States ,Substance abuse ,Psychiatry and Mental health ,Psychology - Abstract
Substance abuse among older adults has received little attention in the past, presumably because this population has traditionally accounted for only a small percentage of the drug abuse problem in the United States. The aging of the baby boomer generation (born 1946-1964), however, will soon swell the ranks of older adults and dramatically alter the demography of American society. Several observations suggest that this expansion will likely be accompanied by a precipitous increase in the abuse of drugs, including prescription medications and illicit substances, among older adults. While it is now evident that the brain changes continuously across life, how drugs of abuse interact with these age-related changes remains unclear. The dynamic nature of brain function, however, suggests that substance abuse during older age may augment the risks and require unique considerations for diagnosis and treatment. In addition to describing current and projected prevalence estimates of substance abuse among older adults, the present review discusses how aging affects brain systems involved in drug abuse, and explores the potential impact of drug abuse on the aging brain. Future directions for substance abuse research among older adults will also be considered.
- Published
- 2007
- Full Text
- View/download PDF
49. A robotic MCF-7:WS8 cell proliferation assay to detect agonist and antagonist estrogenic activity
- Author
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Matthew A. Stoner, Amy W. Wong, Gayathri J. Kollessery, George D. Bittner, Warren Casey, and Chun Z. Yang
- Subjects
medicine.drug_class ,Cell Survival ,Pharmacology ,Endocrine Disruptors ,Toxicology ,Animal Testing Alternatives ,medicine ,Bioassay ,Humans ,Raloxifene ,Fulvestrant ,Cell Proliferation ,Alternative methods ,Dose-Response Relationship, Drug ,Estradiol ,Chemistry ,Cell growth ,Estrogen Antagonists ,Estrogens ,Robotics ,Endocrine disruptor ,MCF-7 ,Receptors, Estrogen ,Estrogen ,MCF-7 Cells ,Biological Assay ,medicine.drug ,Research Article - Abstract
Endocrine-disrupting chemicals with estrogenic activity (EA) or anti-EA (AEA) have been extensively reported to possibly have many adverse health effects. We have developed robotized assays using MCF-7:WS8 cell proliferation (or suppression) to detect EA (or AEA) of 78 test substances supplied by the Interagency Coordinating Committee on the Validation of Alternative Methods and the National Toxicology Program's Interagency Center for the Evaluation of Alternative Toxicological Methods for validation studies. We also assayed ICI 182,780, a strong estrogen antagonist. Chemicals to be assayed were initially examined for solubility and volatility to determine optimal assay conditions. For both EA and AEA determinations, a Range-Finder assay was conducted to determine the concentration range for testing, followed by a Comprehensive assay. Test substances with potentially positive results from an EA Comprehensive assay were subjected to an EA Confirmation assay that evaluated the ability of ICI 182,780 to reverse chemically induced MCF-7 cell proliferation. The AEA assays examined the ability of chemicals to decrease MCF-7 cell proliferation induced by nonsaturating concentrations of 17β-estradiol (E2), relative to ICI or raloxifene, also a strong estrogen antagonist. To be classified as having AEA, a saturating concentration of E2 had to significantly reverse the decrease in cell proliferation produced by the test substance in nonsaturating E2. We conclude that our robotized MCF-7 EA and AEA assays have accuracy, sensitivity, and specificity values at least equivalent to validated test methods accepted by the U.S. Environmental Protection Agency and the Organisation for Economic Co-operation and Development.
- Published
- 2013
50. A Study to Determine the effectiveness of Therapeutic Back Massage on Quality of Sleep among Elderly in Selected old Age Homes at Mangalore
- Author
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Gayathri J Nair, Swapna Dennis, and Babu Dharmarajan
- Subjects
medicine.medical_specialty ,Massage ,business.industry ,Quality of sleep ,Alternative medicine ,Adult population ,social sciences ,medicine.disease ,Obesity ,Quasi experimental study ,medicine ,Physical therapy ,Insomnia ,Elderly people ,medicine.symptom ,business ,General Nursing - Abstract
Sleep-related disorders are common in the general adult population; Therapeutic massage is an ideal way to deal with the health disorders naturally. A quasi experimental study has been carried out to determine the effectiveness of therapeutic back massage on quality of sleep among 60 elderly people in the selected old age homes, in Mangalore, Karnataka, India, found that there was significant difference 6.23 (p
- Published
- 2014
- Full Text
- View/download PDF
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