1. Cryptococcus neoformans Capsular GXM Conformation and Epitope Presentation: A Molecular Modelling Study
- Author
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Stefan Oscarson, Michelle M. Kuttel, and Arturo Casadevall
- Subjects
conformation ,Pharmaceutical Science ,chemical and pharmacologic phenomena ,01 natural sciences ,Epitope ,Virulence factor ,Article ,Analytical Chemistry ,Microbiology ,lcsh:QD241-441 ,03 medical and health sciences ,lcsh:Organic chemistry ,conjugate vaccines ,Drug Discovery ,Physical and Theoretical Chemistry ,Structural motif ,Protein secondary structure ,030304 developmental biology ,Mannan ,Cryptococcus neoformans ,0303 health sciences ,epitope ,biology ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Rational design ,biology.organism_classification ,capsular polysaccharide ,0104 chemical sciences ,molecular modelling ,carbohydrates (lipids) ,carbohydrate antigen ,Chemistry (miscellaneous) ,biology.protein ,GXM ,Molecular Medicine ,Antibody - Abstract
The pathogenic encapsulated Cryptococcus neoformans fungus causes serious disease in immunosuppressed hosts. The capsule, a key virulence factor, consists primarily of the glucuronoxylomannan polysaccharide (GXM) that varies in composition according to serotype. While GXM is a potential vaccine target, vaccine development has been confounded by the existence of epitopes that elicit non-protective antibodies. Although there is evidence for protective antibodies binding conformational epitopes, the secondary structure of GXM remains an unsolved problem. Here an array of molecular dynamics simulations reveal that the GXM mannan backbone is consistently extended and relatively inflexible in both C. neoformans serotypes A and D. Backbone substitution does not alter the secondary structure, but rather adds structural motifs: &beta, DGlcA and &beta, DXyl side chains decorate the mannan backbone in two hydrophillic fringes, with mannose-6-O-acetylation forming a hydrophobic ridge between them. This work provides mechanistic rationales for clinical observations&mdash, the importance of O-acetylation for antibody binding, the lack of binding of protective antibodies to short GXM fragments, the existence of epitopes that elicit non-protective antibodies, and the self-aggregation of GXM chains&mdash, indicating that molecular modelling can play a role in the rational design of conjugate vaccines.
- Published
- 2020