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SI for From Serological Surveys to Disease Burden: A Modelling Pipeline for Chagas Disease

Following the detection of the new coronavirus1 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its spread outside of China, Europe has experienced large epidemics of coronavirus disease 2019 (COVID-19). In response, many European countries have implemented non-pharmaceutical interventions, such as the closure of schools and national lockdowns. Here we study the effect of major interventions across 11 European countries for the period from the start of the COVID-19 epidemics in February 2020 until 4 May 2020, when lockdowns started to be lifted. Our model calculates backwards from observed deaths to estimate transmission that occurred several weeks previously, allowing for the time lag between infection and death. We use partial pooling of information between countries, with both individual and shared effects on the time-varying reproduction number (Rt). Pooling allows for more information to be used, helps to overcome idiosyncrasies in the data and enables more-timely estimates. Our model relies on fixed estimates of some epidemiological parameters (such as the infection fatality rate), does not include importation or subnational variation and assumes that changes in Rt are an immediate response to interventions rather than gradual changes in behaviour. Amidst the ongoing pandemic, we rely on death data that are incomplete, show systematic biases in reporting and are subject to future consolidation. We estimate that-for all of the countries we consider here-current interventions have been sufficient to drive Rt below 1 (probability Rt

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BACKGROUND: The past two decades have seen expansion of childhood vaccination programmes in low-income and middle-income countries (LMICs). We quantify the health impact of these programmes by estimating the deaths and disability-adjusted life-years (DALYs) averted by vaccination against ten pathogens in 98 LMICs between 2000 and 2030. METHODS: 16 independent research groups provided model-based disease burden estimates under a range of vaccination coverage scenarios for ten pathogens: hepatitis B virus, Haemophilus influenzae type B, human papillomavirus, Japanese encephalitis, measles, Neisseria meningitidis serogroup A, Streptococcus pneumoniae, rotavirus, rubella, and yellow fever. Using standardised demographic data and vaccine coverage, the impact of vaccination programmes was determined by comparing model estimates from a no-vaccination counterfactual scenario with those from a reported and projected vaccination scenario. We present deaths and DALYs averted between 2000 and 2030 by calendar year and by annual birth cohort. FINDINGS: We estimate that vaccination of the ten selected pathogens will have averted 69 million (95% credible interval 52-88) deaths between 2000 and 2030, of which 37 million (30-48) were averted between 2000 and 2019. From 2000 to 2019, this represents a 45% (36-58) reduction in deaths compared with the counterfactual scenario of no vaccination. Most of this impact is concentrated in a reduction in mortality among children younger than 5 years (57% reduction [52-66]), most notably from measles. Over the lifetime of birth cohorts born between 2000 and 2030, we predict that 120 million (93-150) deaths will be averted by vaccination, of which 58 million (39-76) are due to measles vaccination and 38 million (25-52) are due to hepatitis B vaccination. We estimate that increases in vaccine coverage and introductions of additional vaccines will result in a 72% (59-81) reduction in lifetime mortality in the 2019 birth cohort. INTERPRETATION: Increases in vaccine coverage and the introduction of new vaccines into LMICs have had a major impact in reducing mortality. These public health gains are predicted to increase in coming decades if progress in increasing coverage is sustained. FUNDING: Gavi, the Vaccine Alliance and the Bill & Melinda Gates Foundation.

On 21 February 2020, a resident of the municipality of Vo', a small town near Padua (Italy), died of pneumonia due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection1. This was the first coronavirus disease 19 (COVID-19)-related death detected in Italy since the detection of SARS-CoV-2 in the Chinese city of Wuhan, Hubei province2. In response, the regional authorities imposed the lockdown of the whole municipality for 14 days3. Here we collected information on the demography, clinical presentation, hospitalization, contact network and the presence of SARS-CoV-2 infection in nasopharyngeal swabs for 85.9% and 71.5% of the population of Vo' at two consecutive time points. From the first survey, which was conducted around the time the town lockdown started, we found a prevalence of infection of 2.6% (95% confidence interval (CI): 2.1-3.3%). From the second survey, which was conducted at the end of the lockdown, we found a prevalence of 1.2% (95% CI: 0.8-1.8%). Notably, 42.5% (95% CI: 31.5-54.6%) of the confirmed SARS-CoV-2 infections detected across the two surveys were asymptomatic (that is, did not have symptoms at the time of swab testing and did not develop symptoms afterwards). The mean serial interval was 7.2 days (95% CI: 5.9-9.6). We found no statistically significant difference in the viral load of symptomatic versus asymptomatic infections (P = 0.62 and 0.74 for E and RdRp genes, respectively, exact Wilcoxon-Mann-Whitney test). This study sheds light on the frequency of asymptomatic SARS-CoV-2 infection, their infectivity (as measured by the viral load) and provides insights into its transmission dynamics and the efficacy of the implemented control measures.

In 2016 the World Health Organization identified 21 countries that could eliminate malaria by 2020. Monitoring progress towards this goal requires tracking ongoing transmission. Here we develop methods that estimate individual reproduction numbers and their variation through time and space. Individual reproduction numbers, Rc, describe the state of transmission at a point in time and differ from mean reproduction numbers, which are averages of the number of people infected by a typical case. We assess elimination progress in El Salvador using data for confirmed cases of malaria from 2010 to 2016. Our results demonstrate that whilst the average number of secondary malaria cases was below one (0.61, 95% CI 0.55–0.65), individual reproduction numbers often exceeded one. We estimate a decline in Rc between 2010 and 2016. However we also show that if importation is maintained at the same rate, the country may not achieve malaria elimination by 2020., Twenty one countries have been identified for malaria elimination by 2020 and their progress needs to be constantly evaluated. Here, the authors present a method that estimates individual reproduction numbers and their variation through time and space and use it to monitor elimination success in El Salvador between 2010 and 2016.

BackgroundThe last two decades have seen substantial expansion of childhood vaccination programmes in low and middle income countries (LMICs). Here we quantify the health impact of these programmes by estimating the deaths and disability-adjusted life years (DALYs) averted by vaccination with ten antigens in 98 LMICs between 2000 and 2030.MethodsIndependent research groups provided model-based disease burden estimates under a range of vaccination coverage scenarios for ten pathogens: hepatitis B (HepB), Haemophilus influenzae type b (Hib), human papillomavirus (HPV), Japanese encephalitis (JE), measles, Neisseria meningitidis serogroup A (MenA), Streptococcus pneumoniae, rotavirus, rubella, yellow fever. Using standardized demographic data and vaccine coverage estimates for routine and supplementary immunization activities, the impact of vaccination programmes on deaths and DALYs was determined by comparing model estimates from the no vaccination counterfactual scenario with those from a default coverage scenario. We present results in two forms: deaths/DALYs averted in a particular calendar year, and in a particular annual birth cohort.FindingsWe estimate that vaccination will have averted 69 (2.5-97.5% quantile range 52-88) million deaths between 2000 and 2030 across the 98 countries and ten pathogens considered, 35 (29-45) million of these between 2000-2018. From 2000-2018, this represents a 44% (36-57%) reduction in deaths due to the ten pathogens relative to the no vaccination counterfactual. Most (96% (93-97%)) of this impact is in under-five age mortality, notably from measles. Over the lifetime of birth cohorts born between 2000 and 2030, we predict that 122 (96-147) million deaths will be averted by vaccination, of which 58 (39-75) and 38 (26-52) million are due to measles and Hepatitis B vaccination, respectively. We estimate that recent increases in vaccine coverage and introductions of additional vaccines will result in a 72% (61-79%) reduction in lifetime mortality caused by these 10 pathogens in the 2018 birth cohort.InterpretationIncreases in vaccine coverage and the introduction of new vaccines into LMICs over the last two decades have had a major impact in reducing mortality. These public health gains are predicted to increase in coming decades if progress in increasing coverage is sustained.

The undersigned president of the ethics board for clinical research at the fundacion oftalmologica de santander foscal. (PDF 479 kb)

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Background WHO's 2020 milestones for Chagas disease include having all endemic Latin American countries certified with no intradomiciliary Trypanosoma cruzi transmission, and infected patients under care. Evaluating the variation in historical exposure to infection is crucial for assessing progress and for understanding the priorities to achieve these milestones.\ud \ud Methods Focusing on Colombia, all the available age-structured serological surveys (undertaken between 1995 and 2014) were searched and compiled. A total of 109 serosurveys were found, comprising 83 742 individuals from rural (indigenous and non-indigenous) and urban settings in 14 (out of 32) administrative units (departments). Estimates of the force-of-infection (FoI) were obtained by fitting and comparing three catalytic models using Bayesian methods to reconstruct temporal and spatial patterns over the course of three decades (between 1984 and 2014).\ud \ud Results Significant downward changes in the FoI were identified over the course of the three decades, and in some specific locations the predicted current seroprevalence in children aged 0–5 years is

Limited access to Chagas disease diagnosis and treatment is a major obstacle to reaching the 2020 World Health Organization milestones of delivering care to all infected and ill patients. Colombia has been identified as a health system in transition, reporting one of the highest levels of health insurance coverage in Latin America. We explore if and how this high level of coverage extends to those with Chagas disease, a traditionally marginalised population. Using a mixed methods approach, we calculate coverage for screening, diagnosis and treatment of Chagas. We then identify supply-side constraints both quantitatively and qualitatively. A review of official registries of tests and treatments for Chagas disease delivered between 2008 and 2014 is compared to estimates of infected people. Using the Flagship Framework, we explore barriers limiting access to care. Screening coverage is estimated at 1.2% of the population at risk. Aetiological treatment with either benznidazol or nifurtimox covered 0.3-0.4% of the infected population. Barriers to accessing screening, diagnosis and treatment are identified for each of the Flagship Framework's five dimensions of interest: financing, payment, regulation, organization and persuasion. The main challenges identified were: a lack of clarity in terms of financial responsibilities in a segmented health system, claims of limited resources for undertaking activities particularly in primary care, non-inclusion of confirmatory test(s) in the basic package of diagnosis and care, poor logistics in the distribution and supply chain of medicines, and lack of awareness of medical personnel. Very low screening coverage emerges as a key obstacle hindering access to care for Chagas disease. Findings suggest serious shortcomings in this health system for Chagas disease, despite the success of universal health insurance scale-up in Colombia. Whether these shortcomings exist in relation to other neglected tropical diseases needs investigating. We identify opportunities for improvement that can inform additional planned health reforms. (C) 2017 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY license.

La transmisión congénita de la enfermedad de Chagas ha sido poco estudiada en Colombia y existen pocos procedimientos rutinarios en el sistema de salud para el manejo de esta enfermedad. Por ello se desarrolló un consenso de expertos dirigido a generar recomendaciones de diagnóstico y tratamiento de Chagas congénito y orientación a mujeres en edad fértil. Con ese propósito se realizó una búsqueda extensiva de la literatura, empleando una combinación de términos Mes (Chagas, Chagas congénito, prevención, control, diagnóstico, tratamiento y embarazo) para reflejar el estado del arte en cada tema de interés. Después de ello, se leyeron los resúmenes y aquellos seleccionados para análisis del texto completo. La literatura relevante se sintetizo, clasifico y organizo en tablas y se presentó al panel de expertos, el cual estaba constituido por 30 profesionales en diferentes áreas. Mediante la metodología Delphi se realizaron 2 rondas de cuestionarios virtuales y una reunión presencial en los cuales se evaluaron los niveles de acuerdo entre los participantes. Los puntos con falta de consenso durante las 2 rondas virtuales se expusieron durante las mesas de discusión en la ronda presencial. La evidencia utilizada se adaptó a las particularidades nacionales según el caso y se aprobó el contenido del documento final. Se propone que estas recomendaciones sean usadas por profesionales de la salud en Colombia. Congenital transmission of Chagas disease has not been extensively studied in Colombia, and there are no standardized processes in the health system regarding the specific diagnosis, treatment and follow-up of this disease. To generate recommendations on congenital Chagas disease and Chagas in women of childbearing age in Colombia, a consensus of experts was developed. An extensive literature search through the Medline database was carried out using the MeSH terms: «Chagas disease/congenital», «prevention and control», «diagnosis», «therapeutics» and «pregnancy». Appropriate abstracts were selected and the full texts were analyzed. The relevant information was synthesized, classified, and organized into tables and figures and was presented to a panel of experts, which was composed of 30 professionals from various fields. Based on the Delphi methodology, three rounds of consultation were conducted. The first and second rounds were based on electronic questionnaires that measured the level of consensus of each question among the participants. The third round was based on a face-to-face discussion focusing on those questions without consensus in the previous consultations. The evidence was adapted to national circumstances on a case-by-case basis, and the content the final document was approved. These recommendations are proposed for use in routine medical practice by health professionals in Colombia.

Oral transmission of Trypanosoma cruzi has gained relevance because of its association with high morbidity and lethality rates. This transmission route is responsible for maintaining the infection of the parasite in sylvatic cycles, and human cases have been associated mainly with the consumption of food contaminated with triatomine feces or didelphid secretions. Several ecological changes allow the intrusion of sylvatic reservoirs and triatomines to the domestic environments with subsequent food contamination. Here, high-resolution molecular tools were used to detect and genotype T. cruzi across humans, reservoirs, and insect vectors in 2 acute outbreaks of presumptive oral transmission in eastern Colombia.

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La transmisión congénita de la enfermedad de Chagas ha sido poco estudiada en Colombia y existen pocos procedimientos rutinarios en el sistema de salud para el manejo de esta enfermedad. Por ello se desarrolló un consenso de expertos dirigido a generar recomendaciones de diagnóstico y tratamiento de Chagas congénito y orientación a mujeres en edad fértil. Con ese propósito se realizó una búsqueda extensiva de la literatura, empleando una combinación de términos MeSH (Chagas, Chagas congénito, prevención, control, diagnóstico, tratamiento y embarazo) para reflejar el estado del arte en cada tema de interés. Después de ello, se leyeron los resúmenes y aquellos seleccionados para análisis del texto completo. La literatura relevante se sintetizó, clasificó y organizó en tablas y se presentó al panel de expertos, el cual estaba constituido por 30 profesionales en diferentes áreas. Mediante la metodología Delphi se realizaron 2 rondas de cuestionarios virtuales y una reunión presencial en los cuales se evaluaron los niveles de acuerdo entre los participantes. Los puntos con falta de consenso durante las 2 rondas virtuales se expusieron durante las mesas de discusión en la ronda presencial. La evidencia utilizada se adaptó a las particularidades nacionales según el caso y se aprobó el contenido del documento final. Se propone que estas recomendaciones sean usadas por profesionales de la salud en Colombia. Congenital transmission of Chagas disease has not been extensively studied in Colombia, and there are no standardized processes in the health system regarding the specific diagnosis, treatment and follow-up of this disease. In order to generate recommendations on congenital Chagas disease and Chagas in women of childbearing age in Colombia, a consensus of experts was developed. An extensive literature search through the Medline database was carried out using the MeSH terms: " Chagas disease/congenital " , " prevention and control " , " diagnosis " , " therapeutics " and " pregnancy " . Appropriate abstracts were selected and the full texts were analyzed. The relevant information was synthesized, classified, and organized into tables and figures and was presented to a panel of experts, which was composed of 30 professionals from various fields. Based on the Delphi methodology, three rounds of consultation were conducted. The first and second rounds were based on electronic questionnaires that measured the level of consensus of each question among the participants. The third round was based on a face-toface discussion focusing on those questions without consensus in the previous consultations. The evidence was adapted to national circumstances on a case-by-case basis, and the content the final document was approved. These recommendations are proposed for use in routine medical practice by health professionals in Colombia.

Introducción. El diagnóstico de infección por Trypanosoma cruzi en fase crónica se hace por medio de pruebas serológicas cuya reproducibilidad no está muy documentada. Objetivo. Evaluar la reproducibilidad de las pruebas serológicas ELISA, IFI y HAI para el diagnóstico de infección por T. cruzi en mujeres embarazadas de una zona endémica de Santander. Materiales y métodos. Mediante la evaluación de la tecnología diagnóstica se determinó la reproducibilidad de las pruebas serológicas ELISA, IFI y HAI en muestras de suero y elución sanguínea, seleccionadas mediante muestreo de corte transversal y pertenecientes a mujeres embarazadas de una zona endémica para enfermedad de Chagas en Santander. Se usó el software Stata, versión 10.0, para los análisis estadísticos. La prueba con la mejor reproducibilidad se determinó por medio de la comparación de los índices kappa más altos de cada técnica. Resultados. Se evaluaron 777 sueros y elución sanguíneas. En suero, la prueba ELISA (punto de corte=0,3), la IFI (punto de corte=1/32) y la HAI (punto de corte=1/16) presentaron índices kappa mayores de 0,8 (0,98, IC 95% : 0,93-1,00; 0,98, IC 95% : 0,92-1,00 y 0,88, IC 95% : 0,74-0,97, respectivamente); no se observaron diferencias estadísticamente significativas entre las tres pruebas evaluadas (p>0,05). Para la elución sanguínea, el índice kappa estuvo por debajo de 0,8 (valor kappa más alto: 0,55, IC 95% : 0,41-0,68). Conclusiones. Las tres pruebas serológicas presentaron reproducibilidad perfecta en suero, determinada mediante el índice kappa, por lo que cualquiera de ellas sería útil para establecer el diagnóstico de infección por T. cruzi . Por su simplicidad y su costo, la prueba ELISA se recomienda como prueba de elección para los programas de tamización de esta infección. Introduction: The diagnosis of chronic Trypanosoma cruzi infection is supported by serological tests whose reproducibility has not been well documented. Objective: To evaluate the reproducibility of the serological tests ELISA, IFAT and IHAT for the diagnosis of T. cruzi infection in pregnant women in an endemic zone in Santander. Materials and methods: Through an evaluation study of diagnostic technologies, the reproducibility of the serological tests ELISA, IFAT and IHAT was determined in serum and eluted blood from pregnant women living in an endemic area for Chagas´ disease in Santander. The samples were selected by cross sectional sampling. The software Stata ™ version 10.0 was used for statistical analysis. By means of the comparison of the highest kappa coefficient of each technique, the test with the best reproducibility was determined. Results: A total of 777 samples were tested. In serum, ELISA (cutoff point: 0.3), IFAT (cutoff point: 1/32) and IHAT (cutoff point: 1/16) had kappa coefficients greater than 0.8 (0.98, 95% CI: 0.93-1.00; 0.98, 95% CI: 0.92-1.00 and 0.88, 95% CI: 0.74-0.97, respectively); no statistically significant differences among the three tests were found (p> 0.05). For the blood eluates, kappa coefficients were below 0.8 (highest kappa: 0.55, 95% CI: 0.41-0.68). Conclusions: For the three serological tests using serum, the reproducibility determined by the kappa coefficient was perfect. Selecting any of them is useful for the diagnosis of T. cruzi infection. Given its simplicity and cost, the ELISA test is recommended for screening for this infection.

Introducción. Las pruebas de diagnóstico rápido han sido postuladas como una forma de garantizar el diagnóstico de malaria, o paludismo, en zonas de difícil acceso. A pesar de su uso difundido, no hay estudios de campo que evalúen la precisión de la prueba de diagnóstico rápido SD Bioline Malaria Antigen Pf/Pv® en Colombia. Objetivo. Evaluar la precisión diagnóstica de la prueba de diagnóstico rápido SD Bioline Malaria Antigen Pf/Pv ®, en dos departamentos endémicos para malaria, comparando el diagnóstico con la gota gruesa corregida por reacción en cadena de la polimerasa (PCR). Materiales y métodos. Se trata de un estudio retrospectivo para evaluar sensibilidad, especificidad, valor diagnóstico positivo (VPP) y negativo (VPN), concordancia y límites de sensibilidad por rangos de parasitemia, de la prueba SD Bioline Malaria Antigen ® Pf/Pv, en Córdoba y Chocó. Los resultados fueron comparados con la gota gruesa corregida por PCR. Resultados. De 383 muestras procesadas, 121 fueron positivas (75 para Plasmodium vivax, 42 para P. falciparum y 4 para infección mixta) y 262 muestras negativas; los resultados obtenidos fueron los siguientes: P. vivax: sensibilidad, 92,0 % (IC 95% 83,6-96,3); especificidad, 98,7 % (IC 95% 96,7-99,5); VPP, 94,5 % (IC 95% 86,7-97,9); VPN, 98,1 % (IC 95% 95,8-99,1); IK, 0,90 (0,80-1,00). P. falciparum: sensibilidad, 88,1 % (IC 95% 75,0-94,8); especificidad, 97,9 % (IC 95% 95,8-99,0); VPP, 84,1% % (IC 95% 70,6-92,1); VPN, 98,5 % (IC 95% 96,6-99,4); IK, 0,80 (0,70-0,90). Conclusiones. La prueba tuvo un buen desempeño, siendo mejor para P. vivax en comparación con que para P. falciparum. Persisten dificultades en la detección de bajas parasitemias. La falta de amplificación de los genes Pfhrp2 y Pfhrp3 en dos muestras con diagnóstico de como infección mixta, sugiere una posible deleción conjunta de estos genes. Introduction: Rapid diagnostic tests (RDT) have been postulated as a way to ensure access to malaria diagnosis in remote areas. Despite its widespread use, there are no field studies to evaluate the accuracy of the SD Bioline Malaria Antigen Pf/Pv in Colombia RDT. Objective: To evaluate the diagnostic accuracy of the SD Bioline Malaria Antigen Pf/Pv® RDT in two departments endemic for malaria, comparing diagnosis with thick film corrected with PCR. Materials and methods: A retrospective study was carried out to evaluate sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), concordance and sensitivity limits according to parasitemia ranges for the SD Bioline Malaria Antigen Pf/Pv ® test in Cordoba and Choco. The results were compared with microscopy corrected by PCR. Results: A total of 383 samples processed, 121 were positive (75 for P. vivax , 42 for P. falciparum and 4 for mixed infection) and 262 negative samples. P. vivax: sensitivity 92.0% (95% CI: 83.6-96.3), specificity 98.7% ( 95% CI: 96.7-99.5), PPV 94.5% (95% CI: 86.7-97.9), NPV 98.1% (95% CI: 95.8-99.1), Cohen´s kappa coefficient was 0.90 (0.80-1.00). P. falciparum: sensitivity 88.1% (95% CI: 75.0-94.8), specificity 97.9% (95% CI: 95.8-99.0), PPV 84.1% (95% CI: 70.6-92.1), NPV 98.5% (95% IC: 96.6-99.4), Cohen´s kappa coefficient 0.80 (95% CI: 0.70-0.90). Conclusions: The test performed well, being better for P. vivax as compared to P. falciparum. There are still difficulties of RDT to detect low parasitemias. The non amplification of Pfhrp2 and Pfhrp3 genes in two samples diagnosed as mixed infection, suggest a possible deletion of these two genes together.

A single polymerase chain reaction (PCR) reaction targeting the spliced-leader intergenic region of Trypanosoma cruzi I was standardised by amplifying a 231 bp fragment in domestic (TcIDOM) strains or clones and 450 and 550 bp fragments in sylvatic strains or clones. This reaction was validated using 44 blind coded samples and 184 non-coded T. cruzi I clones isolated from sylvatic triatomines and the correspondence between the amplified fragments and their domestic or sylvatic origin was determined. Six of the nine strains isolated from acute cases suspected of oral infection had the sylvatic T. cruzi I profile. These results confirmed that the sylvatic T. cruzi I genotype is linked to cases of oral Chagas disease in Colombia. We therefore propose the use of this novel PCR reaction in strains or clones previously characterised as T. cruzi I to distinguish TcIDOMfrom sylvatic genotypes in studies of transmission dynamics, including the verification of population selection within hosts or detection of the frequency of mixed infections by both T. cruzi I genotypes in Colombia.

Background Trypanosoma cruzi, the causative agent of Chagas disease, displays significant genetic variability revealed by six Discrete Typing Units (TcI-TcVI). In this pathology, oral transmission represents an emerging epidemiological scenario where different outbreaks associated to food/beverages consumption have been reported in Argentina, Bolivia, Brazil, Ecuador and Venezuela. In Colombia, six human oral outbreaks have been reported corroborating the importance of this transmission route. Molecular epidemiology of oral outbreaks is barely known observing the incrimination of TcI, TcII, TcIV and TcV genotypes. Methodology and Principal Findings High-throughput molecular characterization was conducted performing MLMT (Multilocus Microsatellite Typing) and mtMLST (mitochondrial Multilocus Sequence Typing) strategies on 50 clones from ten isolates. Results allowed observing the occurrence of TcI, TcIV and mixed infection of distinct TcI genotypes. Thus, a majority of specific mitochondrial haplotypes and allelic multilocus genotypes associated to the sylvatic cycle of transmission were detected in the dataset with the foreseen presence of mitochondrial haplotypes and allelic multilocus genotypes associated to the domestic cycle of transmission. Conclusions These findings suggest the incrimination of sylvatic genotypes in the oral outbreaks occurred in Colombia. We observed patterns of super-infection and/or co-infection with a tailored association with the severe forms of myocarditis in the acute phase of the disease. The transmission dynamics of this infection route based on molecular epidemiology evidence was unraveled and the clinical and biological implications are discussed.

Background Antigen specificity and IgG subclass could be significant in the natural history of Chagas' disease. The relationship between the different stages of human Chagas' disease and the profiles of total IgG and its subclasses were thus analysed here; they were directed against a crude T. cruzi extract and three recombinant antigens: the T. cruzi kinetoplastid membrane protein-11 (rKMP-11), an internal fragment of the T. cruzi HSP-70 protein192-433, and the entire Trypanosoma rangeli HSP-70 protein. Methods Seventeen Brazilian acute chagasic patients, 50 Colombian chronic chagasic patients (21 indeterminate and 29 cardiopathic patients) and 30 healthy individuals were included. Total IgG and its subtypes directed against the above-mentioned recombinant antigens were determined by ELISA tests. Results The T. cruzi KMP-11 and T. rangeli HSP-70 recombinant proteins were able to distinguish both acute from chronic chagasic patients and infected people from healthy individuals. Specific antibodies to T. cruzi crude antigen in acute patients came from IgG3 and IgG4 subclasses whereas IgG1 and IgG3 were the prevalent isotypes in indeterminate and chronic chagasic patients. By contrast, the specific prominent antibodies in all disease stages against T. cruzi KMP-11 and T. rangeli HSP-70 recombinant antigens were the IgG1 subclass. Conclusion T. cruzi KMP-11 and the T. rangeli HSP-70 recombinant proteins may be explored together in the immunodiagnosis of Chagas' disease. Polarising the IgG1 subclass of the IgG response to T. cruzi KMP-11 and T. rangeli HSP-70 recombinant proteins could have important biological effects, taking into account that this is a complement fixing antibody.

Introducción. Los casos de enfermedad de Chagas aguda informados en Colombia son esporádicos. Objetivo. Describir 10 casos notificados al Grupo de Parasitología del Instituto Nacional de Salud entre 2002 y 2005. Materiales y métodos. Utilizando información de historias clínicas, fichas epidemiológicas, informes de resultados de exámenes de laboratorio y análisis de sangre, se tabularon variables demográficas, hallazgos clínicos, paraclínicos y de laboratorio. Se realizaron extendidos de sangre periférica, identificación serológica para IgG mediante inmunofluorescencia indirecta, aislamiento en cultivo e inoculación en ratones, pruebas de reacción en cadena de la polimerasa y análisis isoenzimático. Resultados. El 100% de los casos procedían de zonas endémicas; tres se informaron en Putumayo, dos en cada uno de los departamentos de Arauca, Casanare, Norte de Santander y uno en Santander. La presunta vía de transmisión fue vectorial; en el 30% había convivencia con el vector. El 70% fueron adultos entre los 18 y los 50 años y el 30% niños entre los seis meses y los dos años. El síntoma predominante fue fiebre en el 90%. Los signos de puerta de entrada fueron infrecuentes; solamente un paciente presentó un probable signo de Romaña. Tres pacientes presentaron miocarditis, dos desarrollaron falla cardiaca, y uno taponamiento cardíaco. La parasitemia fue evidente en nueve casos; las pruebas serológicas fueron reactivas en cinco casos y también en cinco casos se logró aislamiento del parásito. El análisis isoenzimático identificó Trypanosoma cruzi grupo I. Conclusiones. La variabilidad clínica predominó. Ningún caso se sospechó clínicamente. Es importante incluir esta enfermedad como diagnóstico diferencial del síndrome febril en regiones endémicas debido a su buena respuesta al tratamiento etiológico el cual previene la fase crónica. Introduction. In Colombia, reported cases of acute Chagas disease are sporadic. Objective. Ten cases were described that had been reported to the Parasitology Laboratory of the Colombian National Health Institute between December 2002 and November 2005. Materials and methods. Information from clinical records, epidemiological report forms, laboratory and blood tests was collated. In addition the following data were compiled: demographic variables, clinical findings, results of laboratory tests and other exams (such as peripheral blood smears), IFAT for IgG antibodies, isolation in culture medium, inoculation in mice, polymerase chain reaction tests and isoenzyme eletrophoresis. Results. All the cases presented in known endemic areas for Chagas disease transmission in Colombia. Three cases were from Putumayo Province, two each from the provinces of Arauca, Casanare, Norte de Santander and one from Santander Province. The probable mode of transmission was vector-borne. Seven cases presented in adults aged 18 to 50, three in children aged 6 months to 2 years. Seven were male and three were female. The most frequent symptom was fever in nine cases. Signs of portal of entry were rare; only one patient presented a possible Romaña´s sign. Three patients presented myocarditis, two acute cardiac failure and one cardiac tamponade. Parasitemia was evident in nine cases; five had positive IgG serological tests; five cases were confirmed through parasite isolation; isoenzyme electrophoresis showed Trypanosoma cruzi group I. Conclusions. Clinical variability prevailed. In none of the cases was a clinical diagnosis suspected. The diagnosis was made and confirmed through laboratory tests alone. The results highlight the importance of including this disease in the differential diagnosis of febrile syndrome in endemic regions due to its good response to etiological treatment and thereby preventing its progression to the chronic phase.

Additional file 2. Text S1. Additional text on quality assessment. Table S1. Boolean algorithms for literature search as of 5th of April 2018. Table S2. Pooled prevalence estimates of T. cruzi infection in both triatomines and potential animal reservoirs by departments (firs administrative units) in Colombia. Table S3. Detailed data for the 18 studies chosen for potential T. cruzi reservoirs in Colombia. Table S4. Detailed data for the 28 studies chosen for Trypanosoma cruzi triatomine vectors in Colombia. Table S5. Results of point or pooled prevalence estimates (meta-analysis using random effects model) by detailed diagnostic methods for the different orders of potential Trypanosoma cruzi animal reservoirs studied in Colombia. Table S6. Results of point or pooled prevalence estimates (meta-analysis using random effects model) of T. cruzi infection by detailed diagnostic methods for the different orders of triatomines studied in Colombia. Table S7. Results of Eggerʼs test for publication bias assessment for estimates of T. cruzi infection rates in animal reservoirs and triatomine vectors in Colombia. Table S8. Results of point or pooled prevalence estimates (meta-analysis using random effects model) for the different orders of potential Trypanosoma cruzi reservoirs studied in Colombia, using only high-quality reports. Table S9. Results of point or pooled prevalence estimates (meta-analysis using random effects model) of T. cruzi infection for the different orders of triatomines studied in Colombia, using only high-quality reports. Figure S1. Content quality assessment of the 39 studies used in the meta-analysis. Figure S2. Funnel plot of the 95% CI pseudo limits for the estimates of T. cruzi prevalence in animal reservoirs in Colombia.

Additional file 2. Text S1. Additional text on quality assessment. Table S1. Boolean algorithms for literature search as of 5th of April 2018. Table S2. Pooled prevalence estimates of T. cruzi infection in both triatomines and potential animal reservoirs by departments (firs administrative units) in Colombia. Table S3. Detailed data for the 18 studies chosen for potential T. cruzi reservoirs in Colombia. Table S4. Detailed data for the 28 studies chosen for Trypanosoma cruzi triatomine vectors in Colombia. Table S5. Results of point or pooled prevalence estimates (meta-analysis using random effects model) by detailed diagnostic methods for the different orders of potential Trypanosoma cruzi animal reservoirs studied in Colombia. Table S6. Results of point or pooled prevalence estimates (meta-analysis using random effects model) of T. cruzi infection by detailed diagnostic methods for the different orders of triatomines studied in Colombia. Table S7. Results of Eggerʼs test for publication bias assessment for estimates of T. cruzi infection rates in animal reservoirs and triatomine vectors in Colombia. Table S8. Results of point or pooled prevalence estimates (meta-analysis using random effects model) for the different orders of potential Trypanosoma cruzi reservoirs studied in Colombia, using only high-quality reports. Table S9. Results of point or pooled prevalence estimates (meta-analysis using random effects model) of T. cruzi infection for the different orders of triatomines studied in Colombia, using only high-quality reports. Figure S1. Content quality assessment of the 39 studies used in the meta-analysis. Figure S2. Funnel plot of the 95% CI pseudo limits for the estimates of T. cruzi prevalence in animal reservoirs in Colombia.