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S- and Fe-cycling bacteria can decisively affect the crystallization of Fe-bearing minerals in sediments from fluvial environments. We have studied the relationships between the Fe-bearing mineral assemblage and the bacterial community composition in the sediments rich in organic matter from the upper Chicamocha river basin (Colombia). Rapid flowing sections of the river contain sediments that have a high redox potential, are poor in organic matter and are enriched in kaolinite and quartz. On the other hand, the mineral assemblage of the sediments deposited in the La Playa dam with a high content in organic matter is enriched in Fe-bearing minerals: (a) vivianite and pyrite in the permanently flooded sediments of the dam and (b) pyrite and goethite in the periodically emerged sediments. The bacterial community composition of these sediments reveals anthropic organic matter pollution processes and biodegradation associated with eutrophication. Moreover, periodically emerged sediments in the La Playa dam contain bacterial groups adapted to the alternation of dry and wet periods under oxic or anoxic conditions. Cell-shaped aggregates with a pyritic composition suggest that sulfate-reducing bacteria (SRB) communities were involved in the precipitation of Fe-sulfides. The precipitation of vivianite in the flooded sediments was favored by a greater availability of Fe(II), which promoted the iron-reducing bacteria (IRB) enrichment of the sediments. The presence of sulfur-oxidizing bacteria (SOB) in the flooded sediments and the activity of iron-oxidizing bacteria (IOB) in the periodically emerged sediments favored both pyrite crystallization under a high sulfide availability and the oxidation of microbially precipitated monosulfides. Moreover, IOB enhanced goethite formation in the periodically emerged sediments.

In this investigation, we showed that high salinity promoted by hydrothermal inputs, reducing conditions of sediments with high content in organic matter, and the occurrence of an appropriate clay mineral precursor provide a suitable framework for low-temperature illitization processes. We studied the sedimentary illitization process that occurs in carbonaceous sediments from a lake with saline waters (Sochagota Lake, Colombia) located at a tropical latitude. Water isotopic composition suggests that high salinity was produced by hydrothermal contribution. Materials accumulated in the Sochagota Lake’s southern entrance are organic matter-poor sediments that contain detrital kaolinite and quartz. On the other hand, materials formed at the central segment and near the lake exit (north portion) are enriched in organic matter and characterized by the crystallization of Fe-sulfides. X-ray diffraction (XRD), field emission scanning electron microscopy (FESEM), high resolution transmission electron microscopy (HRTEM), and energy dispersive X-ray spectrometry (EDX) data allowed for the identification of illite and illite-dioctahedral vermiculite mixed layers (I-DV), which are absent in the southern sediments. High humidity and temperate climate caused the formation of small-sized metastable intermediates of I-DV particles by the weathering of the source rocks in the Sochagota Lake Basin. These particles were deposited in the low-energy lake environments (middle and north part). The interaction of these sediments enriched in organic matter with the saline waters of the lake enriched in hydrothermal K caused a reducing environment that favored Fe mobilization processes and its incorporation to I-DV mixed layers that acted as mineral precursor for fast low temperature illitization, revealing that in geothermal areas clays in lakes favor a hydrothermal K uptake., This work has been financed by the Spanish research project PGC2018-094573-B-I00 from the MCIU-AEI-FEDER. and research group RNM-325 of the Junta de Andalucía (Spain). Our gratitude is also extended to Asociación Universitaria Iberoamericana de Posgrado (AUIP) and the Universidad de Boyacá. Additional thanks to Colombian Research groups Gestión Ambiental COL0005468 and Gestión de Recursos Hídricos COL0005477.

We studied the relationships between the trace element concentration in sediments from a saline lake at a tropical latitude (Sochagota Lake, Colombia) containing hydrothermal and anthropic inputs with the organic matter content, the mineral assemblage composition and the activity of the bacterial communities of the sediments. Organic matter-poor sediments (TOC

Electron microscopy and sediment geochemical data from a river basin (the upper Chicamocha river basin, UCRB, Boyac&aacute, province, Colombia) affected by anthropogenic activities (wastewater discharges, smelting and agricultural activities) showed the existence of heterogeneously distributed Zn particles in the sediments and sediments with Zn contents above the regional background (42 mg/kg). The objective of this study was to evidence the ZnS sedimentary neoformation in organic matter rich sediments deposited in anthropogenic reservoirs to reveal the processes involved in the sedimentary uptake of Zn from potential pollution sources. The highest Zn concentrations are found in clay minerals and organic matter-rich sediments (up to 427 mg/kg) deposited in slow-flowing reaches of the river associated to La Playa dam. Quartz-rich sediments poor in organic matter deposited in fast flowing segments of the river show very low Zn contents (1&ndash, 12 mg/kg). Electron microscopy images showed ZnS nanoparticles forming cell-shaped aggregates suggesting that sulfate-reducing microorganisms acted as templates for the partial binding of Zn and for the nucleation and growth of zinc sulfide minerals. A good correlation of Zn with total organic carbon (r = 0.936) and the low potential redox of these sediments (&minus, 233 mV) suggest that organic matter was able to maintain oxygen depleted conditions appropriate to the Zn accumulation in the sediments. Our results demonstrate that potentially toxic Zn, originating from anthropic activities, was partially immobilized in organic matter-rich sediments through the precipitation of sulfides.

The volcanic area of the Paipa system (Boyacá, Colombia) contains a magmatic heat source and deep fractures that help the flow of hot and highly mineralized waters, which are further combined with cold superficial inputs. This mixed water recharges the Salitre River and downstream feeding Sochagota Lake. The incoming water can contribute to substantial increases in hydrothermal SO42−-Na water in the water of the Salitre River basin area, raising the salinity. An additional hydrogeochemical process occurs in the mix with cold Fe-rich water from alluvial and surficial aquifers. This salinized Fe-rich water feeds the Sochagota Lake, although the impact of freshwaters from rain on the hydrochemistry of the Sochagota Lake is significant. A series of hydrogeochemical, biogeochemical, and mineralogical processes occur inside the lake. The aim of this work was to study the influence of damming in the Sochagota Lake, which acts as a natural attenuation of contaminants such as high concentrations of metals and salty elements coming from the Salitre River. Damming in the Sochagota Lake is considered to be an effective strategy for attenuating highly mineralized waters. The concentrations of dissolved elements were attenuated significantly. Dilution by rainfall runoff and precipitation of iron sulfides mediated by sulfate-reducing bacteria in deposits rich in organic material were the main processes involved in the attenuation of concentrations of SO42−, Fe, As Cu, and Co in the lake water. Furthermore, the K-consuming illitization processes occurring in the sediments could favor the decrease in K and Al.

The results of this study showed how clay mineral assemblages from alluvial sediments were used to deduce the environmental impact of anthropogenic modifications in the Upper Chicamocha River Basin (UCRB) in Colombia. Two dams were investigated: La Playa dam (with anthropogenic input from farm activities and wastewater) and Sochagota Lake dam (with input from natural hydrothermal waters) and found to contain organic-rich deposits modified under highly saline, eutrophic conditions. Results from X-ray diffraction (XRD), scanning electron microscope (SEM) and analytical high resolution electron microscope AEM-HRTEM analyses indicated that the mineral assemblage in the sediments trapped in La Playa dam in the upper part of the basin is characterized by the presence of Fe-bearing smectite (up to 0.4 atoms per formula unit (a.p.f.u.)), whereas sediments downstream the Sochagota Lake dam are characterized by the presence of illite and dispersed fragments of pyrite framboids. Intense eutrophication due to organic compounds and nutrient loads from urban wastewater and agricultural activities in the area above La Playa dam created a reducing environment in which sediments promoted Fe-uptake in authigenic smectite and efficiently trapped it in the sediments. Periodic release of water from Sochagota Lake into the Chicamocha River allowed the incorporation of detrital illite grains and fragments of pyrite framboids (formed by low temperature illitization and Fe-uptake in the lake sediments) into the alluvial sediments in the lower section of the UCRB.

Geothermal systems can provide significant amounts of hydrothermal sulfur to surface waters, increasing salinity and avoiding some of the common anthropic uses. The objective of this study was to investigate the sedimentary neoformation of S-bearing phases in organic matter-rich sediments from a saline lake with hydrothermal inputs (Sochagota Lake, Colombia). Detrital kaolinite and quartz are the main minerals of the materials deposited in the Sochagota Lake. Neoformed clay minerals (illite and illite-dioctahedral vermiculite mixed layers) are concentrated in the central and northern part of the lake in sediments with high organic matter content. The most organic matter-rich materials are characterized by S-bearing minerals: mackinawite, pyrite, and elemental sulfur (S&deg, ). FESEM, high-resolution transmission electron microscopy (HRTEM), EDS, and Raman microspectrometry have revealed the presence of cell-shape aggregates of mackinawite nanoparticles filling the inner part of plant fragments, indicating that microorganisms were involved in the hydrothermal sulfur uptake. The alteration of mackinawite in free sulfide excess environment produced the formation of framboidal pyrite. The evolution to conditions with the presence of oxygen favored the formation of complex S&deg, morphologies.