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The northwestern pond turtle, Actinemys marmorata, and its recently recognized sister species, the southwestern pond turtle, A. pallida, are the sole aquatic testudines occurring over most of western North America and the only living representatives of the genus Actinemys. Although it historically ranged from Washington state through central California, USA, populations of the northwestern pond turtle have been in decline for decades and the species is afforded state-level protection across its range; it is currently being considered for protection under the US Endangered Species Act. Here, we report a new, chromosome-level assembly of A. marmorata as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genome strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises 198 scaffolds spanning 2,319,339,408 base pairs, has a contig N50 of 75 Mb, a scaffold N50 of 146Mb, and BUSCO complete score of 96.7%, making it the most complete testudine assembly of the 24 species from 13 families that are currently available. In combination with the A. pallida reference genome that is currently under construction through the CCGP, the A. marmorata genome will be a powerful tool for documenting landscape genomic diversity, the basis of adaptations to salt tolerance and thermal capacity, and hybridization dynamics between these recently diverged species.

Captive-rearing conservation programs focus primarily on maximizing postrelease survival. Survival increases with size in a variety of taxa, often leading to the use of enhanced size as a means to minimize postrelease losses. Head-starting is a specific captive-rearing approach used to accelerate growth in captivity prior to release in the wild. We explored the effect of size at release, among other potential factors, on postrelease survival in head-started Mojave desert tortoises Gopherus agassizii. Juvenile tortoises were reared for different durations of captivity (2–7 y) and under varying husbandry protocols, resulting in a wide range of juvenile sizes (68–145 mm midline carapace length) at release. We released all animals (n = 78) in the Mojave National Preserve, California, United States, on 25 September 2018. Release size and surface activity were the only significant predictors of fate during the first year postrelease. Larger sized head-starts had higher predicted survival rates when compared with smaller individuals. This trend was also observed in animals of the same age but reared under different protocols, suggesting that accelerating the growth of head-started tortoises may increase efficiency of head-starting programs without decreasing postrelease success. Excluding five missing animals, released head-starts had 82.2% survival in their first year postrelease (September 2018–September 2019), with all mortalities resulting from predation. No animals with >90-mm midline carapace length were predated by ravens. Our findings suggest the utility of head-starting may be substantially improved by incorporating indoor rearing to accelerate growth. Target release size for head-started chelonians will vary among head-start programs based on release site conditions and project-specific constraints.

Water management practices in tidal marshes of the San Francisco Bay Estuary, California are often aimed at increasing suitable habitat for threatened fish species and sport fishes. However, little is known about how best to manage habitat for other sensitive status species like the semiaquatic freshwater Western Pond Turtle (Actinemys marmorata) that is declining throughout much of its range. Here, we examined the basking activity, abundance, survival, and growth of Western Pond Turtles at two brackish water study sites in Suisun Marsh, California that differed in how they were managed, with one having passive management (i.e., no active water regulation) and another having active management (i.e., water regulated for seasonal hunting). Our results revealed that basking activity was greatest when salinity, water stage, and air temperatures were low, shortwave radiation was high, and wind levels were intermediate. These preferred habitat characteristics often reflected conditions that were naturally maintained at the passively managed, muted tidal site. We also found that turtles were more abundant and had higher survival rates in the passively managed habitat compared to the actively managed habitat (201-323 turtles/km2 and 96% survival versus 11-135 turtles/km2 and 77% survival, respectively). Finally, characteristic growth constants from von Bertalanffy models showed that turtles grew more quickly in passively managed habitat compared to the actively managed habitat. Our results suggest that management strategies for this sensitive status species may be more effective if they protect passively managed muted tidal systems that limit or delay extreme cycles of salinity and water levels and conserve elevated terrestrial buffer zones adjacent to muted and full tidal systems.

Successful reintroductions of endangered species rely on comprehensive knowledge of habitat requirements across spatial and temporal scales. To inform designs of reintroduction programs, we studied habitat selection of the federally endangered Sierra Nevada yellow‐legged frog (Rana sierrae) in streams in its northern range. We quantified multi‐scale habitat use across diverse streams, habitat types within streams, and seasonal flows. In one intermittent stream, we compared habitat selection between wild and captive‐reared frogs that were released as a population augmentation. We analyzed habitat selection of seasonal habitat unit types (e.g., pool, riffle, cascades) and dimensions, and microhabitat hydrology and cover. R. sierrae appeared able to meet its ecological requirements in a variety of habitats. Study streams ranged from third‐order perennial streams to first‐order intermittent headwater creeks. Perennial streams retained a variety of habitats across flows whereas intermittent streams dried to just a few pools. Frogs used all seasonal habitat types but selected deeper pools most often relative to available habitats in intermittent streams and selected riffles or showed no preference in perennial streams. Frogs avoided fast deep‐water microhabitats, but, otherwise, preferred flowing water or deeper water without flow. Our results suggest that diverse streams can be considered candidates for reintroductions. Within intermittent streams, deeper perennial pools may provide more stable release sites, whereas non‐pool habitats may be safer in perennial streams with fish. Importantly, captive‐reared frogs selected similar habitats as wild frogs, suggesting that captivity does not alter habitat selection behaviors post‐release and that reintroduction designs for this species can be based on wild frog preferences. By improving our understanding of how habitat use varies among different types of streams and differs seasonally in response to changing habitat conditions, our results inform the design of effective reintroduction programs for frogs in streams.

Thermal traits likely mediate organismal responses to changing thermal environments. As temperatures increase, predicting species responses will depend on understanding how thermal traits vary within and among individuals and across time and space. We evaluated variation in thermal traits within and among individual Mojave Desert Tortoises, using GPS telemetry to quantify movement performance and animal-mounted sensors to measure carapace temperatures. We constructed thermal performance curves (TPCs) based on movement velocity and assessed variation in associated thermal traits by sex, season, and proximity to roads. We also examined the temperature-dependence of monthly home ranges and the frequency of high-displacement movements. Individuals exhibited lower variation in upper critical temperatures (CTmaxE) than in other traits, such as optimum temperatures and lower critical temperatures for movement. All thermal traits varied within individuals, either by season or proximity to roads. We also found that monthly home range size and the frequency of high-displacement movements increased with the time individuals spent within their optimal temperature range; however, this effect was only apparent during months with greater rainfall. Low standing variation in CTmaxE suggests that this trait may be constrained, limiting potential changes through acclimation or selection in warming environments. Our results demonstrate the modifying effect of rainfall on temperature-space use relationships and highlight the dependence of thermal traits on ecological and landscape contexts. Field-based TPCs derived from GPS movement tracks provided ecologically-relevant estimates of thermal traits and suggest an informative framework for unifying elements of thermal biology and spatial ecology.

The conversion of natural habitats to human land uses often increases local temperatures, creating novel thermal environments for species. The variable responses of ectotherms to habitat conversion, where some species decline while others persist, can partly be explained by variation among species in their thermal niches. However, few studies have examined thermal niche variation within species and across forest‐land use ecotones, information that could provide clues about the capacity of species to adapt to changing temperatures. Here, we quantify individual‐level variation in thermal traits of the tropical poison frog, Oophaga pumilio, in thermally contrasting habitats. Specifically, we examined local environmental temperatures, field body temperatures (Tb), preferred body temperatures (Tₚᵣₑf), critical thermal maxima (CTₘₐₓ), and thermal safety margins (TSM) of individuals from warm, converted habitats and cool forests. We found that frogs from converted habitats exhibited greater mean Tb and Tₚᵣₑf than those from forests. In contrast, CTₘₐₓ and TSM did not differ significantly between habitats. However, CTₘₐₓ did increase moderately with increasing Tb, suggesting that changes in CTₘₐₓ may be driven by microscale temperature exposure within habitats rather than by mean habitat conditions. Although O. pumilio exhibited moderate divergence in Tₚᵣₑf, CTₘₐₓ appears to be less labile between habitats, possibly due to the ability of frogs in converted habitats to maintain their Tb below air temperatures that reach or exceed CTₘₐₓ. Selective pressures on thermal tolerances may increase, however, with the loss of buffering microhabitats and increased frequency of extreme temperatures expected under future habitat degradation and climate warming. Abstract in Spanish is available with online material.

Animals may select habitat to maximize the benefits of foraging on growth and reproduction, while balancing competing factors like the risk of predation or mortality from other sources. Variation in the distribution of food resources may lead animals to forage at times or in places that carry greater predation risk, with individuals in poor quality habitats expected to take greater risks while foraging. We studied Mojave desert tortoises (Gopherus agassizii) in habitats with variable forage availability to determine if risk aversion in their selection of habitat relative was related to abundance of forage. As a measure of risk, we examined tortoise surface activity and mortality. We also compared tortoise body size and body condition between habitats with ample forage plants and those with less forage plants. Tortoises from low forage habitats selected areas where more annual plants were nutritious herbaceous flowering plants but did not favor areas of greater perennial shrub cover that could shelter them or their burrows. In contrast, tortoises occupying high forage habitats showed no preference for forage characteristics, but used burrows associated with more abundant and larger perennial shrubs. Tortoises in high forage habitats were larger and active above ground more often but did not have better body condition. Mortality was four times higher for females occupying low forage habitat than those in high forage habitat. Our results are consistent with the idea that tortoises may minimize mortality risk where food resources are high, but may accept some tradeoff of greater mortality risk in order to forage optimally when food resources are limiting.

The effects of indoor rearing versus the conventional method of solely outdoor head-starting on post-release cover and burrow use of juvenile Mojave desert tortoises (Gopherus agassizii), a threatened endemic species, were investigated. We found that partially indoor-reared tortoises exhibited similar post-release behaviours when compared to both same-aged, but smaller, and similar-sized, but older outdoor-reared head-started tortoises, thus increasing the success and decreasing the costs of head-starting.

Reintroductions are an important recovery tool for endangered species but have had varying success. We used demographic data to evaluate the use of reintroductions for the recovery of the federally endangered Sierra Nevada Yellow-legged Frog (Rana sierrae) in stream populations in its northern range where the species is particularly at risk. We conducted a capture–mark–recapture study from 2016–2018 in four diverse streams. One of the streams contained a high abundance of frogs that allowed us to investigate demography in a relatively healthy population. In another of the streams, we tested a reintroduction using captive-reared frogs. We used robust design Huggins and Pradel models to estimate abundance, apparent overwinter survival, recruitment, longevity, and sex ratios. Annual abundance estimates were small, with ≤52 wild adult frogs at three streams and few tadpoles or subadults seen in any of the streams. The oldest frog in our streams was at least 13 yr. Estimates of apparent survival rates of wild adults ranged from 0.55 ± 0.05 standard error (SE) to 0.90 ± 0.05 SE, and estimates of annual recruitment ranged from 0.02 ± 0.11 SE to 0.26 ± 0.03 SE per site. High survival rates leading to long-lived adults may facilitate persistence of these stream populations, whereas low recruitment may limit population growth and recovery. The two largest populations were in intermittent streams, which may reflect their roles as a refuge from fishes. At least 52% of captive-reared frogs survived their first summer after release and at least 36% survived their first winter. Apparent overwinter survival of captive-reared frogs was lower than for wild frogs, ranging from 0.29 ± 0.13 SE to 0.56 ± 0.14 SE. Because of the apparent low survival of wild eggs, tadpoles, and subadults, releasing adults as was done in this study, rather than younger life stages, may be more successful. Our results offer promise for the use of reintroductions to augment depleted populations and suggest that further research on factors affecting recruitment and survival of younger life stages is needed.

Climate change and habitat modification both alter thermal environments and species distributions. However, these drivers of global change are rarely studied together, even though many species are experiencing climate change and habitat modification simultaneously. Here we review existing literature and propose avenues for merging the largely disparate lines of climate and landscape ecological research using temperature exposure and species’ thermal sensitivity as a shared framework. The integration of research on climate and landscape change is in the early stages and lags behind research focused solely on the ecological effects of climate change. Recent studies highlight important mismatches between the resolution of widely used climate datasets and ecological processes, which can be addressed through detailed mapping of thermal landscapes and the microclimates within them. Furthermore, the thermal niches of species, evolved under past climates, can predict the responses of species to changing microclimates associated with habitat modification; this suggests that microclimates and thermal niches may together act as a common filter, reassembling communities in response to both climate and landscape change. There is a need to further integrate microclimate and thermal niche data into landscape ecological research to advance our basic understanding of the combined effects of landscape and climate change and to provide actionable data for climate adaptation strategies that largely focus on activities at landscape scales.

The projected rise in global mean sea levels places many freshwater turtle species at risk of saltwater intrusion into freshwater habitats. Freshwater turtles are disproportionately more threatened than other taxa; thus, understanding the role of salinity in determining their contemporary distribution and evolution should be a research priority. Freshwater turtles are a slowly evolving lineage; however, they can adapt physiologically or behaviourally to various levels of salinity and, therefore, temporarily occur in marine or brackish environments. Here, we provide the first comprehensive global review on freshwater turtle use and tolerance of brackish water ecosystems. We link together current knowledge of geographic occurrence, salinity tolerance, phylogenetic relationships, and physiological and behavioural mechanisms to generate a baseline understanding of the response of freshwater turtles to changing saline environments. We also review the potential origins of salinity tolerance in freshwater turtles. Finally, we integrate 2100 sea level rise (SLR) projections, species distribution maps, literature gathered on brackish water use, and a phylogeny to predict the exposure of freshwater turtles to projected SLR globally. From our synthesis of published literature and available data, we build a framework for spatial and phylogenetic conservation prioritization of coastal freshwater turtles. Based on our literature review, 70 species (∼30% of coastal freshwater turtle species) from 10 of the 11 freshwater turtle families have been reported in brackish water ecosystems. Most anecdotal records, observations, and descriptions do not imply long-term salinity tolerance among freshwater turtles. Rather, experiments show that some species exhibit potential for adaptation and plasticity in physiological, behavioural, and life-history traits that enable them to endure varying periods (e.g. days or months) and levels of saltwater exposure. Species that specialize on brackish water habitats are likely to be vulnerable to SLR because of their exclusive coastal distributions and adaptations to a narrow range of salinities. Most species, however, have not been documented in brackish water habitats but may also be highly vulnerable to projected SLR. Our analysis suggests that approximately 90% of coastal freshwater turtle species assessed in our study will be affected by a 1-m increase in global mean SLR by 2100. Most at risk are freshwater turtles found in New Guinea, Southeast Asia, Australia, and North and South America that may lose more than 10% of their present geographic range. In addition, turtle species in the families Chelidae, Emydidae, and Trionychidae may experience the greatest exposure to projected SLR in their present geographic ranges. Better understanding of survival, growth, reproductive and population-level responses to SLR will improve region-specific population viability predictions of freshwater turtles that are increasingly exposed to SLR. Integrating phylogenetic, physiological, and spatial frameworks to assess the effects of projected SLR may improve identification of vulnerable species, guilds, and geographic regions in need of conservation prioritization. We conclude that the use of brackish and marine environments by freshwater turtles provides clues about the evolutionary processes that have prolonged their existence, shaped their unique coastal distributions, and may prove useful in predicting their response to a changing world.

© 2017 Elsevier Ltd Roads are widespread features of many landscapes that can negatively affect wildlife, most notably through animal-vehicle collisions. Roadside fencing has increasingly been installed to help eliminate this source of mortality. While fencing may reduce road mortality, other types of wildlife responses to this novel barrier are not well understood. Here, we examined the movement behavior, space use, and carapace temperatures of Mojave Desert Tortoises (Gopherus agassizii) as they interacted with a roadside fence and an unfenced road. Using GPS loggers, we tracked tortoise movements for two years at 15-min intervals. We found that carapace temperatures were greater near structures (fence or unfenced road) than away from structures; tortoises near the unfenced road had higher mean carapace temperatures, but tortoises along the fence experienced more extreme upper temperatures that approached the species' thermal limit. Movement speeds were also higher along the structures than away from them. Tortoise home range sizes decreased with proximity to the fence or road; fragmentation of home ranges and road-crossing avoidance may have contributed to smaller home ranges along the fenced and unfenced road, respectively. While tortoises crossed the road significantly less than expected by chance, they did so primarily in May and July and in areas with washes, indicating that placement of roadside fencing and animal underpasses could be optimized by targeting areas where roads intersect washes. Taken together, our results suggest that roadside fencing can affect behavior, space use, and thermal ecology of tortoises, which may require refinements to future conservation strategies involving roadside fencing.

Movement and activity patterns are fundamental to the basic ecology of any organism and can be influenced by a variety of environmental factors. For snakes, which are notable for being secretive and difficult to study, environmental influences on movement are often obscure. Here, we investigate environmental drivers of terrestrial activity for 23 snake species from a temperate community in the Atlantic Coastal Plain region of South Carolina, USA. Activity was strongly seasonal, with primarily fossorial species showing unimodal activity peaks in summer, whereas several aquatic species showed increased terrestrial movements to and from a wetland in both spring and fall. After controlling for seasonal activity, temperature and precipitation had consistent effects on snake movement, with activity of snakes increasing with temperature and decreasing with precipitation. The influence of moon illumination was more ambiguous but may have a weak, negative effect on snake activity. These environmental factors likel...

Faced with a nascent introduction of a non-native species, conservationists need to quickly determine how a population performs in its new environment. Although correlative models can predict environmental suitability at a coarse scale, they often neglect short-term climatic variability, instead relying on long-term averages. Accurately projecting the fate of any particular introduction requires demographic data on how a population responds to a novel environment. The recent introduction of watersnakes (genus Nerodia) poses a risk to California’s already imperiled aquatic vertebrate fauna. Despite inhabiting a seemingly suitable climate, a non-native Nerodia sipedon population in central California is likely to have been affected by a prolonged extreme drought from 2012 to 2015. We studied the only known population of N. sipedon in California for 3 years from 2013 to 2015, and estimated its abundance and annual survival. Its abundance declined from a peak of 218 (95% Credible Interval 149–313) in August 2013 to 97 (80–119) in July 2015. Annual survival of N. sipedon from 2013 to 2014 (0.23, 0.13–0.39) and from 2014 to 2015 (0.29, 0.18–0.41) was lower than survival estimates reported from native populations. Snake body condition, the abundance of large adult females, and prey availability all declined throughout the study. We conclude that the population of N. sipedon declined from 2013 to 2015, likely due to decreasing habitat and prey availability from the prolonged regional drought. This study highlights the importance of the effect of climatic extremes on the trajectory of introduced populations in a novel environment.

© The Wildlife Society, 2017 There is little information on predator–prey interactions in wind energy landscapes in North America, especially among terrestrial vertebrates. Here, we evaluated how proximity to roads and wind turbines affect mesocarnivore visitation with desert tortoises (Gopherus agassizii) and their burrows in a wind energy landscape. In 2013, we placed motion-sensor cameras facing the entrances of 46 active desert tortoise burrows in a 5.2-km2wind energy facility near Palm Springs, California, USA. Cameras recorded images of 35 species of reptiles, mammals, and birds. Counts for 4 species of mesocarnivores at desert tortoise burrows increased closer to dirt roads, and decreased closer to wind turbines. Our results suggest that anthropogenic infrastructure associated with wind energy facilities could influence the general behavior of mammalian predators and their prey. Further investigation of proximate mechanisms that underlie road and wind turbine effects (i.e., ground vibrations, sound emission, and traffic volume) and on wind energy facility spatial designs (i.e., road and wind turbine configuration) could prove useful for better understanding wildlife responses to wind energy development. © 2017 The Wildlife Society.

Load transfer across soil–structure interfaces plays an important role in the capacity and efficiency of many geotechnical applications. Some geotechnical applications may benefit from soil...

Aim Habitat modification is causing widespread declines in biodiversity and the homogenization of biotas. Amphibians are especially threatened by habitat modification, yet we know little about why some species persist or thrive in the face of this threat whereas others decline. Our aim was to identify intrinsic factors that explain variation among amphibians in their sensitivity to habitat modification (SHM), factors that could help target groups of species for conservation. Location Global. Time period 1986–2015 Major taxon studied Amphibians. Methods We quantified SHM using species abundances in natural and altered habitats as reported in published field surveys. We first examined associations between local SHM and range-wide threatened status, population trends and invasiveness. We then evaluated the importance of intrinsic and extrinsic variables in explaining species SHM using multiple comparative methods. Our analyses included over 200 species that could be ranked with confidence from 47 studies across five continents. Results Amphibians species varied considerably in local SHM. High SHM was associated with elevated range-wide extinction risk and declining population trends. Species that were tolerant of habitat modification were most likely to be invasive outside their native range. Geographical range size was the most important intrinsic predictor and was negatively associated with SHM. Larval habitat was also an important predictor, but was tightly coupled with phylogenetic position. Main conclusions Narrowly distributed species whose larvae develop on land or in lotic habitats are most sensitive to habitat modification. However, other unmeasured, phylogenetically constrained traits could underlie the effect of larval habitat. Species range size is frequently correlated with global extinction risk in vertebrates, and our analysis extends this macroecological pattern to the sensitivity of amphibians to local habitat loss, a proximate driver of extinction. These general patterns of SHM should help identify those groups of amphibians most at risk in an era of rapid habitat loss and scarce conservation resources.

Land-cover and climate change are both expected to alter species distributions and contribute to future biodiversity loss. However, the combined effects of land-cover and climate change on assemblages, especially at the landscape scale, remain understudied. Lowland tropical amphibians may be particularly susceptible to changes in land cover and climate warming because many species have narrow thermal safety margins resulting from air and body temperatures that are close to their critical thermal maxima (CTmax ). We examined how changing thermal landscapes may alter the area of thermally suitable habitat (TSH) for tropical amphibians. We measured microclimates in 6 land-cover types and CTmax of 16 frog species in lowland northeastern Costa Rica. We used a biophysical model to estimate core body temperatures of frogs exposed to habitat-specific microclimates while accounting for evaporative cooling and behavior. Thermally suitable habitat area was estimated as the portion of the landscape where species CTmax exceeded their habitat-specific maximum body temperatures. We projected changes in TSH area 80 years into the future as a function of land-cover change only, climate change only, and combinations of land-cover and climate-change scenarios representing low and moderate rates of change. Projected decreases in TSH area ranged from 16% under low emissions and reduced forest loss to 30% under moderate emissions and business-as-usual land-cover change. Under a moderate emissions scenario (A1B), climate change alone contributed to 1.7- to 4.5-fold greater losses in TSH area than land-cover change only, suggesting that future decreases in TSH from climate change may outpace structural habitat loss. Forest-restricted species had lower mean CTmax than species that occurred in altered habitats, indicating that thermal tolerances will likely shape assemblages in changing thermal landscapes. In the face of ongoing land-cover and climate change, it will be critical to consider changing thermal landscapes in strategies to conserve ectotherm species.

Conservation practitioners must contend with an increasing array of threats that affect biodiversity. Citizen scientists can provide timely and expansive information for addressing these threats across large scales, but their data may contain sampling biases. We used randomization procedures to account for possible sampling biases in opportunistically reported citizen science data to identify species' sensitivities to human land use. We analyzed 21,044 records of 143 native reptile and amphibian species reported to the Carolina Herp Atlas from North Carolina and South Carolina between 1 January 1990 and 12 July 2014. Sensitive species significantly associated with natural landscapes were 3.4 times more likely to be legally protected or treated as of conservation concern by state resource agencies than less sensitive species significantly associated with human-dominated landscapes. Many of the species significantly associated with natural landscapes occurred primarily in habitats that had been nearly eradicated or otherwise altered in the Carolinas, including isolated wetlands, longleaf pine savannas, and Appalachian forests. Rare species with few reports were more likely to be associated with natural landscapes and 3.2 times more likely to be legally protected or treated as of conservation concern than species with at least 20 reported occurrences. Our results suggest that opportunistically reported citizen science data can be used to identify sensitive species and that species currently restricted primarily to natural landscapes are likely at greatest risk of decline from future losses of natural habitat. Our approach demonstrates the usefulness of citizen science data in prioritizing conservation and in helping practitioners address species declines and extinctions at large extents.

Despite the trade-offs between renewable energy development, land use, humans, and wildlife, wind and solar development continues to transform the western US into a green energy landscape. While renewable energy reduces carbon emissions and reliance on fossil fuels, many studies have emerged on the associated ecological and social impacts of this technology. Here, we review the current state of knowledge on the nexus between wildlife conservation and energy development in the western US since 2010. We revisit pertinent ecological concepts presented in earlier reviews to assess how far the field has progressed in mitigating negative effects. Specifically, we examine: (i) recent trends in the literature on how wind and solar energy development impact wildlife in the US, (ii) how siting and design of development may maximize energy benefits while minimizing negative effects on wildlife, (iii) the availability and benefits of before-after control-impact studies, and ultimately (iv) how impacts of renewable energy development on wildlife may be mitigated. We also provide case studies on the desert tortoise and greater sage-grouse, two conservation-reliant umbrella species in the western US, to highlight efforts to mitigate the effects of solar and wind energy development, respectively. We recognize that many other species are affected by renewable energy development, but desert tortoises and sage-grouse are representative of the conflicts that need to be addressed. Our review concludes that mitigation can be improved via use of spatial decision support tools, applying novel wildlife deterrence and detection systems developed for existing installed facilities, and incorporating impact studies that provide managers with conservation metrics for evaluating different future development land-use scenarios.

Two populations of a declining western North American freshwater turtle—one coastal and one inland—were exposed to elevated water salinities of 10 ppt and 15 ppt over 2 weeks. Turtles from the coastal estuarine population had reduced feeding and drinking and maintained lower plasma osmolality levels than did those from inland., Sea-level rise, drought and water diversion can all lead to rapid salinization of freshwater habitats, especially in coastal areas. Increased water salinities can in turn alter the geographic distribution and ecology of freshwater species including turtles. The physiological consequences of salinization for freshwater turtles, however, are poorly known. Here, we compared the osmoregulatory response of two geographically separate populations of the freshwater Western Pond Turtle (Actinemys marmorata)—a species declining across its range in western North America—to three constant salinities: 0.4 ppt, 10 ppt and 15 ppt over 2 weeks. We found that turtles from a coastal estuarine marsh population regulated their plasma osmolality at lower levels than their conspecifics from an inland freshwater creek population 45 km away. Plasma osmolalities were consistently lower in estuarine marsh turtles than the freshwater creek turtles over the entire 2-week exposure to 10 ppt and 15 ppt water. Furthermore, estuarine marsh turtles maintained plasma osmolalities within 1 SD of their mean field osmolalities over the 2-week exposure, whereas freshwater creek turtles exceeded their field values within the first few days after exposure to elevated salinities. However, individuals from both populations exhibited body mass loss in 15 ppt water, with significantly greater loss in estuarine turtles. We speculate that the greater ability to osmoregulate by the estuarine marsh turtles may be explained by their reduced feeding and drinking in elevated salinities that was not exhibited by the freshwater creek population. However, due to mass loss in both populations, physiological and behavioural responses exhibited by estuarine marsh turtles may only be effective adaptations for short-term exposures to elevated salinities, such as those from tides and when traversing saline habitats, and are unlikely to be effective for long-term exposure to elevated salinity as is expected under sea-level rise.

Given limited resources for managing invasive species, traditional survey methods may not be feasible to implement at a regional scale. Environmental DNA (eDNA) sampling has proven to be an effective method for detecting some invasive species, but comparisons between the detection probability of eDNA and traditional survey methods using modern occupancy modeling methods are rare. We developed a qPCR assay to detect two species of watersnake (Nerodia fasciata and Nerodia sipedon) introduced to California, USA, and we compared the efficacy of eDNA and aquatic trapping. We tested 3-9 water samples each from 30 sites near the known range of N. fasciata, and 61 sites near the known range of N. sipedon. We also deployed aquatic funnel traps at a subset of sites for each species. We detected N. fasciata eDNA in three of nine water samples from just one site, but captured N. fasciata in traps at three of ten sites. We detected N. sipedon eDNA in five of six water samples from one site, which was also the only site of nine at which this species was captured in traps. Traditional trapping surveys had a higher probability of detecting watersnakes than eDNA surveys, and both survey methods had higher detection probability for N. sipedon than N. fasciata. Occupancy models that integrated both trapping and eDNA surveys estimated that 5 sites (95% Credible Interval: 4-10) of 91 were occupied by watersnakes (both species combined), although snakes were only detected at four sites (three for N. fasciata, one for N. sipedon). Our study shows that despite the many successes of eDNA surveys, traditional sampling methods can have higher detection probability for some species. We recommend those tasked with managing species invasions explicitly compare eDNA and traditional survey methods in an occupancy framework to inform their choice of the best method for detecting nascent populations.

Habitat conversion is driving biodiversity loss and restructuring species assemblages across the globe. Responses to habitat conversion vary widely, however, and little is known about the degree to which shared evolutionary history underlies changes in species richness and composition. We analyzed data from 48 studies, comprising 438 species on five continents, to understand how taxonomic and phylogenetic diversity of amphibian assemblages shifts in response to habitat conversion. We found that evolutionary history explains the majority of variation in species’ responses to habitat conversion, with specific clades scattered across the amphibian tree of life being favored by human land uses. Habitat conversion led to an average loss of 139 million years of amphibian evolutionary history within assemblages, high species and lineage turnover at landscape scales, and phylogenetic homogenization at the global scale (despite minimal taxonomic homogenization). Lineage turnover across habitats was greatest in lowland tropical regions where large species pools and stable climates have perhaps given rise to many microclimatically specialized species. Together, our results indicate that strong phylogenetic clustering of species’ responses to habitat conversion mediates nonrandom structuring of local assemblages and loss of global phylogenetic diversity. In an age of rapid global change, identifying clades that are most sensitive to habitat conversion will help prioritize use of limited conservation resources.

The Journal of Wildlife Management 80(4):720–728; 2016; DOI: 10.1002/jwmg.1054 Research Article Habitat Selection by Juvenile Mojave Desert Tortoises BRIAN D. TODD, 1 Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, One Shields Ave, Davis, CA 95616, USA BRIAN J. HALSTEAD, U.S. Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA LINDSAY P. CHIQUOINE, Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, One Shields Ave, Davis, CA 95616, USA J. MARK PEADEN, Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, One Shields Ave, Davis, CA 95616, USA KURT A. BUHLMANN, University of Georgia’s Savannah River Ecology Lab, Drawer E, Aiken, SC 29802, USA TRACEY D. TUBERVILLE, University of Georgia’s Savannah River Ecology Lab, Drawer E, Aiken, SC 29802, USA MELIA G. NAFUS, San Diego Zoo Institute for Conservation Research, 15600 San Pasqual Valley Rd, Escondido, CA 92027, USA ABSTRACT Growing pressure to develop public lands for renewable energy production places several protected species at increased risk of habitat loss. One example is the Mojave desert tortoise (Gopherus agassizii), a species often at the center of conflicts over public land development. For this species and others on public lands, a better understanding of their habitat needs can help minimize negative impacts and facilitate protection or restoration of habitat. We used radio-telemetry to track 46 neonate and juvenile tortoises in the Eastern Mojave Desert, California, USA, to quantify habitat at tortoise locations and paired random points to assess habitat selection. Tortoise locations near burrows were more likely to be under canopy cover and had greater coverage of perennial plants (especially creosote [Larrea tridentata]), more coverage by washes, a greater number of small-mammal burrows, and fewer white bursage (Ambrosia dumosa) than random points. Active tortoise locations away from burrows were closer to washes and perennial plants than were random points. Our results can help planners locate juvenile tortoises and avoid impacts to habitat critical for this life stage. Additionally, our results provide targets for habitat protection and restoration and suggest that diverse and abundant small-mammal populations and the availability of creosote bush are vital for juvenile desert tortoises in the Eastern Mojave Desert. O 2016 The Wildlife Society. KEY WORDS California, development, Gopherus agassizii, habitat selection, Mojave Desert, renewable energy, restoration, solar energy. Managing wildlife is often more about managing habitat than managing animals. Appropriate habitat management, however, requires knowing which habitat animals use to meet their needs. Studies that focus on third-order habitat selection (Johnson 1980)—habitat selection by animals within their home ranges—can reveal species’ resource requirements; identify factors that affect its fitness, demography, and distribution; and thereby enable focused protection or restoration of habitat features (Manly et al. 2002). Such information is especially important for managing and recovering sensitive status species, defined as species protected by law or treated as being of conservation concern by management agencies; often, habitat needs of such species can affect regulatory decisions (Lovich and Ennen 2011). Received: 18 May 2015; Accepted: 9 February 2016 E-mail: btodd@ucdavis.edu The desert southwest of the United States lies at the center of many important regulatory decisions that affect wildlife habitat. This is influenced primarily by the strong and growing interest in developing public lands for renewable energy (Lovich and Ennen 2011) and by continued urban growth and occasional expansion of military training grounds (Darst et al. 2013). The conversion of native desert habitats for human land use affects many sensitive status species but also creates opportunities to make proposed development more sustainable. A better understanding of how habitat characteristics shape distributions of special status species can inform development planning to minimize impacts and help locate affected species (Stoms et al. 2013). In addition, understanding the habitat needs of species that are negatively affected by development provides actionable targets for habitat preservation or restoration as part of a larger portfolio of management or recovery options (Darst et al. 2013). The Mojave desert tortoise (Gopherus agassizii, hereafter desert tortoise or tortoise) is an example of a protected species with sensitive status that frequently factors into policy The Journal of Wildlife Management

© 2015, International Association for Ecology and Health. The emerging amphibian disease chytridiomycosis varies in severity depending on host species. Within species, disease susceptibility can also be influenced by pathogen variation and environmental factors. Here, we report on experimental exposures of American bullfrogs (Lithobates catesbeianus) to three different isolates of Batrachochytrium dendrobatidis (Bd), including one implicated in causing mass mortality of wild American bullfrogs. Exposed frogs showed low infection prevalence, relatively low infection load, and lack of clinical disease. Our results suggest that environmental cofactors are likely important contributors to Bd-associated American bullfrog mortality and that this species both resists and tolerates Bd infection.

© 2015 The Zoological Society of London. Maternal body size can have notable consequences on reproductive success. For example, fecundity often increases with body size. Less is known, however, about the relationship between maternal size and factors affecting offspring fitness, including size, growth and survival. Here, we examined the relationship between hatchling and maternal body size in the Mojave Desert tortoise Gopherus agassizii. We further examined the relationships between survival and growth after 1 year and size at hatching. We found that larger females tended to produce larger offspring; post-hatching growth and survival also correlated positively with size at hatching. Our results suggest that, in desert tortoises, maternal body size may indirectly influence offspring fitness via growth and survival for at least the first year of life. Such an advantage early in life may confer long-term benefits for individuals, especially in species thought to have high juvenile mortality or that inhabit highly variable environments.

Chytridiomycosis, the disease caused by the fungal pathogen Batrachochytrium dendrobatidis ( Bd ), has devastated global amphibian biodiversity. Nevertheless, some hosts avoid disease after Bd exposure even as others experience near-complete extirpation. It remains unclear whether the amphibian adaptive immune system plays a role in Bd defence. Here, we describe gene expression in two host species—one susceptible to chytridiomycosis and one resistant—following exposure to two Bd isolates that differ in virulence. Susceptible wood frogs ( Rana sylvatica ) had high infection loads and mortality when exposed to the more virulent Bd isolate but lower infection loads and no fatal disease when exposed to the less virulent isolate. Resistant American bullfrogs ( R. catesbeiana ) had high survival across treatments and rapidly cleared Bd infection or avoided infection entirely. We found widespread upregulation of adaptive immune genes and downregulation of important metabolic and cellular maintenance components in wood frogs after Bd exposure, whereas American bullfrogs showed little gene expression change and no evidence of an adaptive immune response. Wood frog responses suggest that adaptive immune defences may be ineffective against virulent Bd isolates that can cause rapid physiological dysfunction. By contrast, American bullfrogs exhibited robust resistance to Bd that is likely attributable, at least in part, to their continued upkeep of metabolic and skin integrity pathways as well as greater antimicrobial peptide expression compared to wood frogs, regardless of exposure. Greater understanding of these defences will ultimately help conservationists manage chytridiomycosis.

The projected rise in global mean sea levels places many freshwater turtle species at risk of saltwater intrusion into freshwater habitats. Freshwater turtles are disproportionately more threatened than other taxa; thus, understanding the role of salinity in determining their contemporary distribution and evolution should be a research priority. Freshwater turtles are a slowly evolving lineage; however, they can adapt physiologically or behaviourally to various levels of salinity and, therefore, temporarily occur in marine or brackish environments. Here, we provide the first comprehensive global review on freshwater turtle use and tolerance of brackish water ecosystems. We link together current knowledge of geographic occurrence, salinity tolerance, phylogenetic relationships, and physiological and behavioural mechanisms to generate a baseline understanding of the response of freshwater turtles to changing saline environments. We also review the potential origins of salinity tolerance in freshwater turtles. Finally, we integrate 2100 sea level rise (SLR) projections, species distribution maps, literature gathered on brackish water use, and a phylogeny to predict the exposure of freshwater turtles to projected SLR globally. From our synthesis of published literature and available data, we build a framework for spatial and phylogenetic conservation prioritization of coastal freshwater turtles. Based on our literature review, 70 species (∼30% of coastal freshwater turtle species) from 10 of the 11 freshwater turtle families have been reported in brackish water ecosystems. Most anecdotal records, observations, and descriptions do not imply long-term salinity tolerance among freshwater turtles. Rather, experiments show that some species exhibit potential for adaptation and plasticity in physiological, behavioural, and life-history traits that enable them to endure varying periods (e.g. days or months) and levels of saltwater exposure. Species that specialize on brackish water habitats are likely to be vulnerable to SLR because of their exclusive coastal distributions and adaptations to a narrow range of salinities. Most species, however, have not been documented in brackish water habitats but may also be highly vulnerable to projected SLR. Our analysis suggests that approximately 90% of coastal freshwater turtle species assessed in our study will be affected by a 1-m increase in global mean SLR by 2100. Most at risk are freshwater turtles found in New Guinea, Southeast Asia, Australia, and North and South America that may lose more than 10% of their present geographic range. In addition, turtle species in the families Chelidae, Emydidae, and Trionychidae may experience the greatest exposure to projected SLR in their present geographic ranges. Better understanding of survival, growth, reproductive and population-level responses to SLR will improve region-specific population viability predictions of freshwater turtles that are increasingly exposed to SLR. Integrating phylogenetic, physiological, and spatial frameworks to assess the effects of projected SLR may improve identification of vulnerable species, guilds, and geographic regions in need of conservation prioritization. We conclude that the use of brackish and marine environments by freshwater turtles provides clues about the evolutionary processes that have prolonged their existence, shaped their unique coastal distributions, and may prove useful in predicting their response to a changing world.

Human activities often replace native forests with warmer, modified habitats that represent novel thermal environments for biodiversity. Reducing biodiversity loss hinges upon identifying which species are most sensitive to the environmental conditions that result from habitat modification. Drawing on case studies and a meta-analysis, we examined whether observed and modelled thermal traits, including heat tolerances, variation in body temperatures, and evaporative water loss, explained variation in sensitivity of ectotherms to habitat modification. Low heat tolerances of lizards and amphibians and high evaporative water loss of amphibians were associated with increased sensitivity to habitat modification, often explaining more variation than non-thermal traits. Heat tolerances alone explained 24-66% (mean = 38%) of the variation in species responses, and these trends were largely consistent across geographic locations and spatial scales. As habitat modification alters local microclimates, the thermal biology of species will likely play a key role in the reassembly of terrestrial communities.

Sexual size dimorphism (SSD) is a well-documented phenomenon in both plants and animals; however, the ecological and evolutionary mechanisms that drive and maintain SSD patterns across geographic space at regional and global scales are understudied, especially for reptiles. Our goal was to examine geographic variation of turtle SSD and to explore ecological and environmental correlates using phylogenetic comparative methods. We use published body size data on 135 species from nine turtle families to examine how geographic patterns and the evolution of SSD are influenced by habitat specialization, climate (annual mean temperature and annual precipitation) and climate variability, latitude, or a combination of these predictor variables. We found that geographic variation, magnitude and direction of turtle SSD are best explained by habitat association, annual temperature variance and annual precipitation. Use of semi-aquatic and terrestrial habitats was associated with male-biased SSD, whereas use of aquatic habitat was associated with female-biased SSD. Our results also suggest that greater temperature variability is associated with female-biased SSD. In contrast, wetter climates are associated with male-biased SSD compared with arid climates that are associated with female-biased SSD. We also show support for a global latitudinal trend in SSD, with females being larger than males towards the poles, especially in the families Emydidae and Geoemydidae. Estimates of phylogenetic signal for both SSD and habitat type indicate that closely related species occupy similar habitats and exhibit similar direction and magnitude of SSD. These global patterns of SSD may arise from sex-specific reproductive behaviour, fecundity and sex-specific responses to environmental factors that differ among habitats and vary systematically across latitude. Thus, this study adds to our current understanding that while SSD can vary dramatically across and within turtle species under phylogenetic constraints, it may be driven, maintained and exaggerated by habitat type, climate and geographic location.

Chytridiomycosis, the disease caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd), has devastated global amphibian biodiversity. Nevertheless, some hosts avoid disease after Bd exposure even as others experience near-complete extirpation. It remains unclear whether the amphibian adaptive immune system plays a role in Bd defence. Here, we describe gene expression in two host species—one susceptible to chytridiomycosis and one resistant—following exposure to two Bd isolates that differ in virulence. Susceptible wood frogs (Rana sylvatica) had high infection loads and mortality when exposed to the more virulent Bd isolate but lower infection loads and no fatal disease when exposed to the less virulent isolate. Resistant American bullfrogs (R. catesbeiana) had high survival across treatments and rapidly cleared Bd infection or avoided infection entirely. We found widespread upregulation of adaptive immune genes and downregulation of important metabolic and cellular maintenance components in wood frogs after Bd exposure, whereas American bullfrogs showed little gene expression change and no evidence of an adaptive immune response. Wood frog responses suggest that adaptive immune defences may be ineffective against virulent Bd isolates that can cause rapid physiological dysfunction. By contrast, American bullfrogs exhibited robust resistance to Bd that is likely attributable, at least in part, to their continued upkeep of metabolic and skin integrity pathways as well as greater antimicrobial peptide expression compared to wood frogs, regardless of exposure. Greater understanding of these defences will ultimately help conservationists manage chytridiomycosis.

Deserts may be disproportionately vulnerable to changes in precipitation that accompany global climate change due to complex evolutionary relationships of species to historical conditions. Based on current and projected climate scenarios for the southwestern United States, we manipulated rainfall timing and quantity and measured the response by plants and the growth and behavior of the desert tortoise (Gopherus agassizii) to precipitation in the eastern Mojave Desert. We found that winter-dominant rain – the current prevailing pattern in the eastern Mojave Desert – and greater total rainfall correlated with greater cover and species richness of plants. Winter-dominant rain also correlated with a higher proportion of native plants flowering relative to invasive plants. Juvenile tortoises grew more rapidly when they were subjected to rainfall treatments that associated with increased plant abundance and species richness, while their behavior appeared more driven by water availability. Our results suggest that precipitation timing may be as important as rainfall quantity when considering total effects of climate change on arid-adapted systems. Further research should explore how the timing of rainfall may interact with aridity or temperature to influence total effects due to climate change on arid communities.

© Inter-Research 2017. Emerging infectious diseases cause population declines in many ectotherms, with outbreaks frequently punctuated by periods of mass mortality. It remains unclear, however, whether thermoregulation by ectotherms and variation in environmental temperature is associated with mortality risk and disease progression, especially in wild populations. Here, we examined environmental and body temperatures of free-ranging eastern box turtles Terrapene carolina during a mass die-off coincident with upper respiratory disease. We recorded deaths of 17 turtles that showed clinical signs of upper respiratory disease among 76 adult turtles encountered in Berea, Kentucky (USA), in 2014. Of the 17 mortalities, 11 occurred approximately 14 d after mean environmental temperature dropped 2.5 SD below the 3 mo mean. Partial genomic sequencing of the major capsid protein from 1 sick turtle identified a ranavirus isolate similar to frog virus 3. Turtles that lacked clinical signs of disease had significantly higher body temperatures (23°C) than sick turtles (21°C) during the mass mortality, but sick turtles that survived and recovered eventually warmed (measured by temperature loggers). Finally, there was a significant negative effect of daily environmental temperature deviation from the 3 mo mean on survival, suggesting that rapid decreases in environmental temperature were correlated with mortality. Our results point to a potential role for environmental temperature variation and body temperature in disease progression and mortality risk of eastern box turtles affected by upper respiratory disease. Given our findings, it is possible that colder or more variable environmental temperatures and an inability to effectively thermoregulate are associated with poorer disease outcomes in eastern box turtles.

The Journal of Wildlife Management 78(7):1151–1160; 2014; DOI: 10.1002/jwmg.773 Research Article Survival, Demography, and Growth of Gopher Tortoises (Gopherus polyphemus) from Three Study Sites with Different Management Histories TRACEY D. TUBERVILLE, 1 University of Georgia’s Savannah River Ecology Lab, Drawer E, Aiken, SC 29802, USA BRIAN D. TODD, Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, One Shields Ave, Davis, CA 95616, USA SHARON M. HERMANN, Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA WILLIAM K. MICHENER, University Libraries, 1312 Basehart SE, Albuquerque, NM 87106, USA CRAIG GUYER, Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA ABSTRACT Recovery or sustainable management of wildlife populations often entails management of habitat on which they depend. In this regard, turtles pose unique conservation challenges because of their life histories. The combination of late maturity, low survival when young, and dependence on high adult survival suggests they may be slow to respond demographically to conventional habitat management. Thus, long- term studies are necessary to understand population dynamics and recovery potential in these species. We used 5–11 years of mark-recapture data from 3 populations to evaluate survivorship, demography, and somatic growth of gopher tortoises (Gopherus polyphemus). Green Grove and Wade Tract (southwest GA) are ecological reserves with a history of land management compatible with tortoises. In contrast, Conecuh National Forest (south-central AL) is a closed-canopy pine plantation with prior intensive site preparation but where management intervention improved habitat for tortoises during the study. Apparent survival was high for mature tortoises (87–98%) compared to immature tortoises (70–82%). Adults comprised 57–79% of individuals captured, with Green Grove and Wade Tract populations dominated by larger individuals but Conecuh having a more uniform size distribution. The largest adults captured at Conecuh (297 mm maximum carapace length [CL]) were smaller than the largest adults from Green Grove (337 mm CL) or Wade Tract (341 mm CL), although characteristic growth constants from von Bertalanffy models were similar among sites. We suggest these results indicate a recovering population at Conecuh, where habitat conditions for gopher tortoises have improved despite a legacy of intense predation by humans and reduced habitat quality at the inception of this national forest. Further, we recommend using a combination of short- term and long-term monitoring metrics to assess population recovery in such long-lived species. O 2014 The Wildlife Society. KEY WORDS demography, gopher tortoise, Gopherus polyphemus, growth, habitat management, population recovery, survivorship. Turtles are among the most imperiled vertebrate group globally, with nearly 66% classified as “vulnerable to extinction” or worse (International Union for the Conserva- tion of Nature [IUCN] 2012). Turtles offer a unique set of conservation challenges due to their slow life history strategies. The combination of high hatchling and early juvenile mortality, high adult survivorship and longevity, delayed sexual maturity, and low reproductive output (Gibbons 1987, Iverson 1991) makes them vulnerable to demographic perturbations (Brooks et al. 1991, Congdon Received: 29 May 2013; Accepted: 26 June 2014 Published: 26 August 2014 E-mail: tubervil@uga.edu Tuberville et al. Survival, Demography, and Growth in Tortoises et al. 1993, but see Fordham et al. 2007). Likewise, these traits also limit the ability of turtle populations to recover even after threats have abated (Bailey and Guyer 1998, Hall et al. 1999, Tucker et al. 2001, Troe¨ng and Rankin 2005). The gopher tortoise (Gopherus polyphemus) is restricted to the Coastal Plain physiographic province in the southeastern United States and was historically associated with the longleaf pine (Pinus palustris) ecosystem. Less than 3% of the original longleaf pine ecosystem remains, mostly as small, isolated fragments (Ware et al. 1993, Means 2006). Because of this habitat loss, many of the more than 200 associated vertebrate species, including the gopher tortoise, have also experienced dramatic declines (Means 2006). In 1987, the western population of the gopher tortoise was federally listed as threatened, and in 2011, the United States Fish and

The Sierra Nevada Yellow-Legged Frog (Rana sierrae) has generally been viewed as a lake species, but it has increasingly been found in streams, including in the northern part of its range where it ...

Ecology of the Sierra Nevada Yellow-Legged Frog (Rana sierrae) is well understood in high elevation lakes, but data on habitat preferences in stream-dwelling populations are lacking. We sought to expand understanding of stream habitat use by R. sierrae by investigating habitat suitability at the microhabitat and reach scales. We collected habitat availability and use data during 2016–2017 at five stream sites representative of geomorphic diversity in the northern Sierra Nevada mountains of California. At each frog use and availability location, we collected data on geomorphic unit type (e.g., riffles, pools), water depth, water velocity, substrate (e.g., gravel, cobble), and percent cover, including herbaceous, canopy, and total cover. Bootstrapped logistic regression models for all study sites combined indicated water depth and velocity were the strongest predictors of post-metamorphic (adult and subadult) use by R. sierrae, while substrate and total cover provided moderate improvement in microhabitat use predictions. Specifically, adults had the highest probability of use in microhabitats with

Successful forest management for multiple uses requires balancing extractive practices with maintaining biodiversity, among other important goals. Amphibians comprise an important and abundant part of the biodiversity of many forests. Previous studies have documented declines in the abundance and diversity of amphibians in harvested forests. However, only recently have studies begun to elucidate the mechanisms that underlie such declines. Here, we studied the effects of timber harvesting on survival of geographically widespread ambystomatid salamanders in three forest regions of North America. We used terrestrial enclosures in the Northeast, Midwest, and Southeast to compare amphibian survival in unharvested controls, partially harvested stands (~25% canopy reduction), and clearcuts with coarse woody debris either retained or removed. In all regions, patterns of amphibian survival were similar, with both juvenile and adult salamanders generally having significantly lower survival in clearcuts compared with unharvested controls. Survival of juvenile salamanders in partially harvested stands was also low, but adult salamanders survived as well or better in partially harvested stands as in controls. Larger body size in juveniles was significantly correlated with recapture, irrespective of treatment, in both the Northeast and Southeast, but not in the Midwest or for adults in any region. Relatively heavier adults were more likely to be captured again in the Southeast, but relative mass was not correlated with recapture in any other regions or for juveniles. Our results suggest that increased amphibian mortality may contribute to declines of amphibian abundance and richness after forest clearcutting for the regions evaluated here. Although our results indicate that partial harvesting is compatible with survival of adult salamanders, retention of intact forest around breeding ponds would benefit all terrestrial stages of pond-breeding salamanders and represents a best management practice for the maintenance of amphibian biodiversity. © 2013 Elsevier B.V.

The morphological differences in female genitalia within and between species are little studied and poorly understood, yet understanding patterns of variation in female genitalia can provide insights into mechanisms of genital evolution. The present study aimed to explore the patterns of intraspecific and interspecific variation in female genitalia in two sister taxa of watersnake (Nerodia sipedon and Nerodia fasciata) that have similar genital shape. We used a geometric morphometric (GM) approach to study variation in shape of the vagina between and within two sister species. We examined genital shape in female watersnakes ranging from small, sexually immature females to large reproductive females that had recently given birth. We found that shape variation of genitalia is strongly correlated with body size, where larger but not smaller females have a bifurcation in the vagina. However, we also found significant shape variation in the structure of the vagina between the two species, where N. fasciata has narrower genitalia with more prominent bifurcation, whereas N.sipedon has wider genitalia with less marked bifurcation. Using GM allowed us to detect significant differences in genital shape that were not apparent upon visual examination alone, suggesting that shape variation in female genitalia may be greater than previously assumed. Additional study of morphological differences in male reproductive organs for these species would help to determine whether there has been genital co-evolution, and potentially mechanical reproductive isolation, in these two closely-related and occasionally sympatric species. © 2013 The Linnean Society of London.

Northern Watersnakes, Nerodia sipedon, have been introduced into California's Central Valley and pose an important new challenge for the management of biodiversity in the state's already greatly distressed freshwater ecosystems. Nonnative watersnakes will likely compete with federally threatened Giant Gartersnakes, Thamnophis gigas, and prey on native amphibians and fish, including young salmonids, many of which are imperiled. We used three types of aquatic funnel traps and three different methods to estimate the abundance and density of N. sipedon in a small wetland in Roseville, California. Capture rates did not differ significantly among the three trap types but snakes captured in large box funnel traps were nearly 300 mm longer on average than those captured in minnow traps. Our estimates of the abundance of N. sipedon in our 2-ha trapping area were similar for the mark–recapture model, Leslie depletion curve, and the actual number of snakes removed over 57 days (112.4–119 individuals; approx...

Roads are recognized as important contributors to wildlife population declines and are thought to pose greatest risk to vagile species with large home ranges and long generation times. We examined variation in the relative abundance and demographic structure of Agassiz’s desert tortoise ( Gopherus agassizii ) near roads that varied in traffic volume. We found that the abundance of tortoise sign (scat, tracks, pallets, burrows, and live and dead individuals) varied with traffic volume and distance from the road depending on traffic volume. The relative abundance of tortoise sign was greatest along roads with low traffic volume (

© 2016 Elsevier Ltd Understanding how traits affect species responses to threats like habitat loss may help prevent extinctions. This may be especially true for understudied taxa for which we have little data to identify declines before it is too late to intervene. We used a metric derived from citizen science data on snake occurrences to determine which traits were most correlated with species' sensitivity to human land use. We found that snake species that feed primarily on vertebrates, that use a high proportion of aquatic habitats, and that have small geographic ranges occurred in more natural and less human-dominated landscapes. In contrast, body size, clutch (or litter) size, the degree of exposure to human-dominated landscapes, reproductive mode, habitat specialization, and whether a species was venomous or not had less effect on their sensitivity to human land use. Our results extend previous findings that higher trophic position is correlated with extinction risk in many vertebrates by showing that snake species that feed primarily on vertebrates are more sensitive to human land use – a primary driver of extinction. It is likely that conversion of natural landscapes for human land use alters biotic communities, causing losses of important trophic groups, especially in aquatic and riparian communities. Practitioners should therefore prioritize preserving aquatic habitat and natural landscapes with intact biotic communities that can support species at higher trophic levels, as well as focus monitoring on populations of range-restricted species.

Pathogenic fungi have substantial effects on global biodiversity, and 2 emerging pathogenic species—the chytridiomycete Batrachochytrium dendrobatidis, which causes chytridiomycosis in amphibians, and the ascomycete Geomyces destructans, which causes white-nose syndrome in hibernating bats—are implicated in the widespread decline of their vertebrate hosts. We synthesized current knowledge for chytridiomycosis and white-nose syndrome regarding disease emergence, environmental reservoirs, life history characteristics of the host, and host–pathogen interactions. We found striking similarities between these aspects of chytridiomycosis and white-nose syndrome, and the research that we review and propose should help guide management of future emerging fungal diseases.

© 2016 John Wiley & Sons Ltd/CNRS. The fungal pathogen Batrachochytrium dendrobatidis (Bd) has caused the greatest known wildlife pandemic, infecting over 500 amphibian species. It remains unclear why some host species decline from disease-related mortality whereas others persist. We introduce a conceptual model that predicts that infection risk in ectotherms will decrease as the difference between host and pathogen environmental tolerances (i.e. tolerance mismatch) increases. We test this prediction using both local-scale data from Costa Rica and global analyses of over 11 000 Bd infection assays. We find that infection prevalence decreases with increasing thermal tolerance mismatch and with increasing host tolerance of habitat modification. The relationship between environmental tolerance mismatches and Bd infection prevalence is generalisable across multiple amphibian families and spatial scales, and the magnitude of the tolerance mismatch effect depends on environmental context. These findings may help explain patterns of amphibian declines driven by a global wildlife pandemic.

Remote aquatic ecosystems are exposed to an assortment of semivolatile organic compounds (SOCs) originating from current and historic uses, of local and global origin. Here, a representative suite of 57 current- and historic-use pesticides, polychlorinated biphenyls, and polycyclic aromatic hydrocarbons were surveyed in the plasma of the western pond turtle (Emys marmorata) and their potential prey items and habitat. California study sites included Sequoia National Park, Whiskeytown National Recreation Area, and Six Rivers National Forest. Each was downstream of undeveloped watersheds and varied in distance from agricultural and urban pollution sources. SOCs were detected frequently in all sites with more found in turtle plasma and aquatic macroinvertebrates in the two sites closest to agricultural and urban sources. Summed PCBs were highest in Whiskeytown National Recreation Area turtle plasma (mean; 1.56ng/g ww) compared to plasma from Sequoia National Park (0.16ng/gww; p=0.002) and Six Rivers National Forest (0.07ng/g ww; p=0.001). While no current-use pesticides were detected in turtle plasma at any site, both current- and historic-use pesticides were found prominently in sediment and macroinvertebrates at the Sequoia National Park site, which is immediately downwind of Central Valley agriculture. SOC classes associated with urban and industrial pollution were found more often and at higher concentrations at Whiskeytown National Recreation Area. These findings demonstrate a range of SOC exposure in a turtle species with current and proposed conservation status and shed additional light on the fate of environmental contaminants in remote watersheds.

© 2016 by The Herpetologists' League, Inc. Native to the southeastern United States, Southern Watersnakes (Nerodia fasciata) are known from two sites in California, but their ecological impacts are poorly understood. We investigated the ecology of Southern Watersnakes in Machado Lake, Harbor City, Los Angeles County, California, including an assessment of control opportunities. We captured 306 watersnakes as a result of aquatic trapping and hand captures. We captured snakes of all sizes (162-1063 mm snout-vent length [SVL], 3.5-873.3 g), demonstrating the existence of a well-established population. The smallest reproductive female was 490 mm SVL and females contained 12-46 postovulatory embryos (mean = 21). Small watersnakes largely consumed introduced Western Mosquitofish (Gambusia affinis), while larger snakes specialized on larval and metamorph American Bullfrogs (Lithobates catesbeianus) and Green Sunfish (Lepomis cyanellus). Overall capture per unit effort (CPUE) in traps declined with time during an intensive 76-d trapping bout, but CPUE trends varied considerably among traplines and it is unlikely that the overall decline in CPUE represented a major decrease in the snake population size. Although we found no direct evidence that Southern Watersnakes are affecting native species in Machado Lake, this population may serve as a source for intentional or unintentional transportation of watersnakes to bodies of water containing imperiled native prey species or potential competitors.

Concern that environmental contaminants contribute to global amphibian population declines has prompted extensive experimental investigation, but individual-level experimental results have seldom been translated to population-level processes. We used our research on the effects of mercury (Hg) on American toads (Bufo americanus) as a model for bridging the gap between individual-level contaminant effects and amphibian population viability. We synthesized the results of previous field and laboratory studies examining effects of Hg throughout the life cycle of B. americanus and constructed a comprehensive demographic population model to evaluate the consequences of Hg exposure on population dynamics. Our model explicitly considered density-dependent larval survival, which is known to be an important driver of amphibian population dynamics, and incorporated two important factors that have seldom been considered in previous amphibian modeling studies: environmental stochasticity and sublethal effects. We demonstrated that decreases in embryonic survival and sublethal effects (e.g., reduced body size) that delay maturation have minor effects on population dynamics, whereas contaminant effects that reduce late-larval or post-metamorphic survival have important population-level consequences. We found that excessive Hg exposure through maternal transfer or larval diet, alone, had minor effects on B. americanus populations. Simultaneous maternal and dietary exposure resulted in reduced population size and a dramatic increase in extinction probability, but explicit prediction of population-level effects was dependent on the strength of larval density dependence. Our results suggest that environmental contaminants can influence amphibian population viability, but that highly integrative approaches are needed to translate individual-level effects to populations.

Nonlethal indices of contaminant exposure can facilitate research on the accumulation and effects of contaminants in wildlife. Here, we tested the efficacy of using amputated toes (''toe clips''), a common byproduct when marking amphibians in population and genetic studies, to determine mercury (Hg) concentrations in amphibians. We examined total mercury (THg) concen- trations in American toads (Bufo americanus) collected along a contamination gradient at a Hg-contaminated field site. We found significant positive correlations between toe THg and blood THg concentrations in adult males and females collected in two different years. We also found that blood and toe clips could be used to predict maternal transfer of Hg, an important mechanism of reproductive toxicity in wildlife. Maternal toe THg concentrations were more highly correlated with egg THg concentrations than were maternal blood THg concentrations. Our results indicate that amputated toes are effective for identifying Hg concentrations in amphibians.