1. Rarimicrobium hominis gen. nov., sp. nov., representing the fifth genus in the phylum Synergistetes that includes human clinical isolates
- Author
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Hélène Marchandin, Fabien Aujoulat, Paul A. Lawson, Hélène Jean-Pierre, Emma Allen-Vercoe, Philippe Bouvet, Estelle Jumas-Bilak, Hydrosciences Montpellier (HSM), Institut national des sciences de l'Univers (INSU - CNRS)-Institut de Recherche pour le Développement (IRD)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier), Biologie cellulaire et reproduction, Centre National de la Recherche Scientifique (CNRS), Department of Microbiology and Plant Biology [Norman, Oklahoma, USA], and University of Oklahoma (OU)
- Subjects
Adult ,DNA, Bacterial ,Male ,Biology ,Microbiology ,Phylogenetics ,Genus ,RNA, Ribosomal, 16S ,Humans ,Clade ,Phylogeny ,ComputingMilieux_MISCELLANEOUS ,Ecology, Evolution, Behavior and Systematics ,Aged ,Aged, 80 and over ,Whole genome sequencing ,Genetics ,Base Composition ,Bacteria ,Strain (biology) ,Fatty Acids ,Sequence Analysis, DNA ,General Medicine ,Middle Aged ,16S ribosomal RNA ,biology.organism_classification ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Bacterial Typing Techniques ,Taxon ,Female - Abstract
Five human clinical isolates of an unknown, strictly anaerobic, slow-growing, Gram-stain-negative, rod-shaped micro-organism were subjected to a polyphasic taxonomic study. Comparative 16S rRNA gene sequence-based phylogeny showed that the isolates grouped in a clade that included members of the generaPyramidobacter,Jonquetella, andDethiosulfovibrio; the type strain ofPyramidobacter piscolenswas the closest relative with 91.5–91.7 % 16S rRNA gene sequence similarity. The novel strains were mainly asaccharolytic and unreactive in most conventional biochemical tests. Major metabolic end products in trypticase/glucose/yeast extract broth were acetic acid and propionic acid and the major cellular fatty acids were C13 : 0and C16 : 0, each of which could be used to differentiate the strains fromP. piscolens. The DNA G+C content based on whole genome sequencing for the reference strain 22-5-S 12D6FAA was 57 mol%. Based on these data, a new genus,Rarimicrobiumgen. nov., is proposed with one novel species,Rarimicrobium hominissp. nov., named after the exclusive and rare finding of the taxon in human samples.Rarimicrobiumis the fifth genus of the 14 currently characterized in the phylumSynergistetesand the third one in subdivision B that includes human isolates. The type strain ofRarimicrobium hominisis ADV70T( = LMG 28163T = CCUG 65426T).
- Published
- 2015
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