22 results on '"Arnaud Papin"'
Search Results
2. Urban soil phytomanagement for Zn and Cd in situ removal, greening, and Zn-rich biomass production taking care of snail exposure
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Annette de Vaufleury, Valérie Bert, Arnaud Grignet, Arnaud Papin, INERIS, Parc Technologique, ALATA BP 2 60550, Verneuil-en-Halatte, France, Laboratoire Chrono-environnement - CNRS - UBFC (UMR 6249) (LCE), Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC), national funds through PHYTOAGGLO (ADEME - Agence De l'Envrionnement et de la Maitrise de l'Energie) 1072C0045, ADEME TEZ17-21, and Region Hauts-de-France
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Willow ,Health, Toxicology and Mutagenesis ,010501 environmental sciences ,engineering.material ,01 natural sciences ,Soil ,Greening ,Biomonitoring ,Soil Pollutants ,Environmental Chemistry ,Biomass ,ComputingMilieux_MISCELLANEOUS ,0105 earth and related environmental sciences ,biology ,Chemistry ,Salix ,General Medicine ,15. Life on land ,biology.organism_classification ,Pollution ,6. Clean water ,Zinc ,Horticulture ,Phytoremediation ,Salix viminalis ,Biodegradation, Environmental ,Bioaccumulation ,engineering ,[SDV.TOX.ECO]Life Sciences [q-bio]/Toxicology/Ecotoxicology ,Fertilizer ,Short rotation coppice ,Cadmium - Abstract
The phytoextraction potential of Arabidopsis halleri (L.) O'Kane & Al Shehbaz and Salix viminalis L. to partially remove Zn and Cd in soil was investigated. In an urban field site, a very short rotation coppice of willows was implemented, and growth parameters were monitored for 3 years. A. halleri was cultivated in the same site with or without fertilizer to improve biomass yield and/or Zn and Cd aerial part concentrations. Effects of harvest and co-cultivation on these two parameters were measured. To determine if willows and A. halleri leaves were risky in case of consumption by a herbivorous invertebrate like the landsnail Cantareus aspersus, metal concentrations of snails fed with Zn- and Cd-enriched and low enriched leaves were compared. Willows and A. halleri grew well on the metal-contaminated soil (1.7 and 616 mg kg-1 Cd and Zn, respectively). The A. halleri Zn foliar concentration reached the Zn hyperaccumulation threshold (> 10,000 mg kg-1 DW) in the presence of NPK fertilizer and although the soil was alkaline (pH > 8.2). Cd concentration increased with harvest and fertilizer. Cd and Zn foliar concentrations of willows were far above baseline values. Laboratory snails exposure revealed that willow leaves ingestion caused a moderate increase of Cd, Pb, and Zn bioaccumulation in snails compared to the one caused by A. halleri ingestion. The soil and plant metal concentrations were reflected by field snail biomonitoring. This study confirmed the interest of selecting A. halleri and willows to partially remove Zn and Cd in the soil and emphasized their potential usefulness in greening urban contaminated area and producing raw materials for green chemistry while paying attention to the environmental pollutant transfer.
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- 2019
3. New insight on the risk profile pertaining to lithium-ion batteries under thermal runaway as affected by system modularity and subsequent oxidation regime
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Arnaud Bordes, Guy Marlair, Aurélien Zantman, Sylvie Herreyre, Arnaud Papin, Philippe Desprez, and Amandine Lecocq
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Renewable Energy, Sustainability and the Environment ,Energy Engineering and Power Technology ,Electrical and Electronic Engineering - Published
- 2022
4. The Use of Sorghum in a Phytoattenuation Strategy: A Field Experiment on a TE-Contaminated Site
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Rodolphe Gaucher, Arnaud Papin, Alexandre Perlein, Erik Meers, Marcella Fernandes de Souza, Valérie Bert, Isabelle Zdanevitch, Océane Desannaux, Institut National de l'Environnement Industriel et des Risques (INERIS), and Universiteit Gent = Ghent University [Belgium] (UGENT)
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anaerobic digestion ,GENTLE REMEDIATION ,Biofortification ,Biomass ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,lcsh:Technology ,Cd ,lcsh:Chemistry ,0202 electrical engineering, electronic engineering, information engineering ,General Materials Science ,Instrumentation ,lcsh:QH301-705.5 ,2. Zero hunger ,Fluid Flow and Transfer Processes ,biology ,General Engineering ,Soil contamination ,lcsh:QC1-999 ,Computer Science Applications ,Biofuel ,ARBUSCULAR-MYCORRHIZAE ,[SDE]Environmental Sciences ,GROWTH ,sorghum trudan headless ,phytomanagement ,020209 energy ,METAL ACCUMULATION ,HEAVY-METALS ,Biogas ,ANAEROBIC-DIGESTION ,PLANTS ,CROPS ,0105 earth and related environmental sciences ,lcsh:T ,Process Chemistry and Technology ,PHYTOREMEDIATION ,sorghum biomass 133 ,Sorghum ,biology.organism_classification ,SOILS ,Phytoremediation ,Agronomy ,lcsh:Biology (General) ,lcsh:QD1-999 ,lcsh:TA1-2040 ,Earth and Environmental Sciences ,Soil water ,Environmental science ,lcsh:Engineering (General). Civil engineering (General) ,lcsh:Physics - Abstract
International audience; Phytoattenuation combines phytoextraction or phytostabilization with the economic valorization of the biomass produced on the contaminated soil. Sorghum bicolor is a suitable crop for this strategy, as it is known to be metal-tolerant and can be used for biogas or bioethanol production or in strategies toward biofortification. In the current investigation, two cultivars, Biomass 133 and Trudan Headless (HL), were studied in a metal-contaminated (Cd, Pb, Zn) field site located in northern France to assess their potential use in a phytoattenuation strategy. The biomass yield and the metal transfer in the produced biomass were monitored in three plots with different pollution levels. Both cultivars were tolerant to high levels of metal pollution in field conditions, with yields similar to that obtained on uncontaminated sites. Neither of the cultivars changed the metal mobility of the soil and both exhibited a metal-excluder behavior. Nevertheless, Cd concentration in the aboveground part of Trudan HL, and of Biomass 133 to a lesser extent, could restrict their use in some valorization options. However, biogas production was possible with the produced biomass, indicating anaerobic digestion to be a possible valorization route for sorghum grown on contaminated sites.
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- 2021
5. Accurate analysis of HCl in biomethane using laser absorption spectroscopy and ion-exchange chromatography
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Javis A. Nwaboh, Jiawen Liu, Arnaud Papin, Olav Werhahn, Jianrong Li, Heleen Meuzelaar, Nicolas Chatellier, Zhechao Qu, Stefan Persijn, Adriaan M H van der Veen, Volker Ebert, Physikalisch-Technische Bundesanstalt [Braunschweig] (PTB), VSL, Dutch Metrology Institute, and Institut National de l'Environnement Industriel et des Risques (INERIS)
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Materials science ,010504 meteorology & atmospheric sciences ,Absorption spectroscopy ,Ion chromatography ,Analytical chemistry ,7. Clean energy ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,law.invention ,010309 optics ,chemistry.chemical_compound ,Biogas ,law ,Natural gas ,Impurity ,0103 physical sciences ,Electrochemistry ,Environmental Chemistry ,Absorption (electromagnetic radiation) ,Hydrogen chloride ,Spectroscopy ,0105 earth and related environmental sciences ,business.industry ,Laser ,chemistry ,[SDE]Environmental Sciences ,business - Abstract
International audience; Biomethane is a renewable energy gas with great potential to contribute to the diversification and greening of the natural gas supply. Ideally, biomethane can directly be injected into the natural gas grid system. For grid injection, specifications such as those in EN 16723-1 shall be met. One of the impurities to be monitored is hydrogen chloride (HCl). To assess conformity with the specification for HCl, accurate and reliable test methods are required. Here, we report the development of three novel test methods, based on a variety of laser absorption spectroscopy techniques (Direct absorption spectroscopy-DAS and wavelength modulation spectroscopy-WMS) and ion-exchange chromatography, for the measurement of HCl in biomethane. Gas mixtures of HCl in biomethane were used to demonstrate the performance of the spectroscopic systems in the nmol mol−1 to low μmol mol−1 ranges, achieving uncertainties in the 4% range, k = 2. For ion-exchange chromatography analysis, HCl was first collected on an alkali-impregnated quartz fiber filter. The analysis was performed according to ISO 21438-2 and validated using synthetic biomethane spiked with HCl. The relative expanded uncertainties for the ion exchange chromatography HCl measurements are in the 10–37% range, k = 2. The results presented for the 3 test methods demonstrate that the respective methods can be used for HCl conformity assessment in biomethane.
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- 2021
6. Overview of the French Operational Network for In Situ Observation of PM Chemical Composition and Sources in Urban Environments (CARA Program)
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Joel Savarino, Jean-Eudes Petit, Gilles Levigoureux, Shouwen Zhang, Sabrina Pontet, Laurent Y. Alleman, Florie Chevrier, Carole Boullanger, Raphaële Falhun, Gaëlle Uzu, Jean-Luc Besombes, Nicolas Bonnaire, Samuël Weber, Deepchandra Srivastava, Abdoulaye Samaké, Dalia Salameh, Arnaud Papin, Valérie Gros, Véronique Riffault, Yunjiang Zhang, Anais Detournay, Caroline Marchand, Alexandre Albinet, Nicolas Marchand, Marta Dominik-Sègue, Céline Garbin, Mélodie Chatain, Eva Leoz-Garziandia, Véronique Ghersi, Sébastien Conil, Jérôme Rangognio, Tanguy Amodeo, Guillaume Grignion, Robin Aujay-Plouzeau, Jean-Luc Jaffrezo, Benjamin Chazeau, Olivier Favez, Institut National de l'Environnement Industriel et des Risques (INERIS), LCSQA - Laboratoire Central de Surveillance de la Qualité de l’Air, Institut des Géosciences de l’Environnement (IGE), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Université Grenoble Alpes (UGA), Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Chimie Atmosphérique Expérimentale (CAE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Ecole nationale supérieure Mines-Télécom Lille Douai (IMT Lille Douai), Institut Mines-Télécom [Paris] (IMT), Centre for Energy and Environment (CERI EE - IMT Nord Europe), Ecole nationale supérieure Mines-Télécom Lille Douai (IMT Nord Europe), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), Laboratoire Chimie de l'environnement (LCE), Aix Marseille Université (AMU)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), AtmoSud, Madininair, Atmo Grand Est, Atmo Nouvelle-Aquitaine, Atmo Bourgogne Franche-Comté (ATMO BFC), Atmo Normandie, Air Breizh, Gwad'air, AIRPARIF - Surveillance de la qualité de l'air en Île-de-France, Qualitair Corse, Air Pays de la Loire, ATMO Auvergne-Rhône-Alpes (ATMO-AURA), LIG'AIR- Surveillance de la Qualité de l'Air en Région Centre, ATMO Hauts de France [Lille], Environnements, Dynamiques et Territoires de Montagne (EDYTEM), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS), Observatoire Pérenne de l'Environnement, Agence Nationale pour la Gestion des Déchets Radioactifs (ANDRA), French Ministry of Environment, ADEME, CNRS, CEA, ACTRIS-France (CLAP national observation service), ANDRA, ENS Paris, CARA program (LCSQA), CPER CLIMIBIO, SOURCES project (1462C0064), DECOMBIO project (1362C0028), PM-DRIVE project (1162C0002), CAMERA project (1062c0008), INACS project (1262c0011), QAMECS project (1262c0011), ANR-11-LABX-0005,Cappa,Physiques et Chimie de l'Environnement Atmosphérique(2011), ANR-10-LABX-0056,OSUG@2020,Innovative strategies for observing and modelling natural systems(2010), European Project: 262254,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2010-1,ACTRIS(2011), European Project: 654109,H2020,H2020-INFRAIA-2014-2015,ACTRIS-2(2015), Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Institut de Recherche pour le Développement (IRD)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Centre for Energy and Environment (CERI EE), Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut de Chimie du CNRS (INC), Atmo Bourgogne Franche-Comté, Environnements, Dynamiques et Territoires de la Montagne (EDYTEM), and Centre National de la Recherche Scientifique (CNRS)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])
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In situ ,Atmospheric Science ,source ,010504 meteorology & atmospheric sciences ,[SDE.MCG]Environmental Sciences/Global Changes ,Aerosol chemical composition ,lcsh:QC851-999 ,010501 environmental sciences ,Environmental Science (miscellaneous) ,Mineral dust ,Reference laboratory ,01 natural sciences ,7. Clean energy ,apportionment ,Apportionment ,11. Sustainability ,Air quality index ,Chemical composition ,0105 earth and related environmental sciences ,[SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere ,aerosol chemical composition ,business.industry ,Environmental resource management ,Quality control ,source apportionment ,Particulates ,atmospheric_science ,Aerosol ,monitoring strategies ,13. Climate action ,urban air quality ,Environmental chemistry ,Environmental science ,lcsh:Meteorology. Climatology ,France ,business ,Quality assurance - Abstract
The CARA program has been developed since 2008 by the French reference laboratory for air quality monitoring (LCSQA) and the regional monitoring networks to gain a better knowledge at the national level on the particulate matter (PM) chemistry and its diverse origins in urban environments. It results of strong collaborations with international-level academic partners, allowing to bring state-of-the-art, straightforward and robust results and methodologies within operational air quality stakeholders (and subsequently, decision makers). Here, we illustrate some of the main outputs obtained over the last decade thanks to this program, regarding methodological aspects (both in terms of measurement techniques and data treatment procedures) as well as acquired knowledge on the predominant PM sources. Offline and online methods are used following well-suited quality assurance and quality control procedures, notably including inter-laboratory comparison exercises. Source apportionment studies are conducted using various receptor modeling approaches. Overall, the results presented herewith underline the major influences of residential wood burning (during the cold period) and road transport emissions (exhaust and non-exhaust ones, all along the year), as well as substantial contributions of mineral dust and primary biogenic particles (mostly during the warm period). Long-range transport phenomena, e.g., advection of secondary inorganic aerosols from the European continental sector and of Saharan dust into the French West Indies, are also discussed in this paper. Finally, we briefly address the use of stable isotope measurements (δ15N) and of various organic molecular markers for a better understanding of the origins of ammonium and of the different organic aerosol fractions, respectively.
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- 2021
7. Phytomanagement of a metal(loid)-contaminated agricultural site using aromatic and medicinal plants to produce essential oils: analysis of the metal(loid) fate in the value chain
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Anissa Lounès-Hadj Sahraoui, Brett Robinson, Valérie Bert, Isabelle Zdanevitch, Rodolphe Gaucher, Arnaud Papin, Alexandre Perlein, Institut National de l'Environnement Industriel et des Risques (INERIS), Universiteit Gent = Ghent University [Belgium] (UGENT), University of Canterbury [Christchurch], Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), and Université du Littoral Côte d'Opale (ULCO)
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Coriandrum ,Health, Toxicology and Mutagenesis ,Arbuscular mycorrhizal fungi ,chemistry.chemical_element ,Salvia sclarea ,010501 environmental sciences ,01 natural sciences ,Soil ,Sativum ,Metals, Heavy ,Oils, Volatile ,Environmental Chemistry ,Soil Pollutants ,Coriandrum sativum ,Microbial inoculant ,0105 earth and related environmental sciences ,Distillation residues ,2. Zero hunger ,Cadmium ,Plants, Medicinal ,biology ,SAGE ,General Medicine ,Biomass valorization ,15. Life on land ,biology.organism_classification ,Pollution ,Soil contamination ,Soil conditioner ,Biodegradation, Environmental ,chemistry ,Environmental chemistry ,[SDE]Environmental Sciences ,Aided phytostabilisation - Abstract
International audience; Phytomanagement uses plants and soil conditioners to create value on contaminated land while minimizing environmental risk. This work was carried out on a metal(loid)-contaminated site and aimed at assessing the suitability of Salvia sclarea L. (sage) and Coriandrum sativum L. (coriander) combined with an arbuscular mycorrhizal fungus (AMF) inoculant to immobilize metal(loid)s and produce essential oils (EO). The effect of the inoculant on the transfer of metal(loid)s (ML, i.e., Cd, Cu, Pb, Zn, As, Ni, and Sb) to plants and the ML soil mobility were investigated. The ML concentrations in EO from both plant species and the valorization options for the distillation residues (soil conditioner, animal fodder, and anaerobic digestion) were studied. Sage was a suitable candidate for this value chain because it presents an excluder phenotype and the residues of oil extraction could be used as a soil conditioner. The metal concentrations in the sage EO were similar to those obtained from plants cultivated on an uncontaminated soil. These results indicate the suitability of sage harvested on the contaminated soil according to the ML fate in the whole value chain. Like the EO of sage, ML concentrations in the coriander EO did not differ from those in the commercial EO that were obtained from plants grown on uncontaminated soil. However, the use of distillation residues of coriander was limited by their relatively elevated Cd concentrations. The use of a mycorrhizal inoculum did not decrease the Cd mobility in soil for the coriander.
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- 2021
8. Phytoextraction of Zn and Cd with Arabidopsis halleri: a focus on fertilization and biological amendment as a means of increasing biomass and Cd and Zn concentrations
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Arnaud Grignet, Arnaud Papin, Joël Fontaine, Anissa Lounès-Hadj Sahraoui, Samuel Teillaud, and Valérie Bert
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Health, Toxicology and Mutagenesis ,Amendment ,Arabidopsis ,Biomass ,engineering.material ,Plant Roots ,Plant use of endophytic fungi in defense ,Human fertilization ,Mycorrhizae ,Environmental Chemistry ,Ecotoxicology ,Soil Pollutants ,biology ,fungi ,food and beverages ,General Medicine ,biology.organism_classification ,Pollution ,Phytoremediation ,Horticulture ,Zinc ,Fertilization ,engineering ,Piriformospora ,Fertilizer ,Cadmium - Abstract
The current work aims to investigate the influence of fertilization (fertilizer) and fungal inoculation (Funneliformis mosseae and Serendipita indica (formerly Piriformospora indica), respectively arbuscular mycorrhizal (AMF) and endophytic fungi) on the phytoextraction potential of Arabidopsis halleri (L.) O’Kane & Al-Shehbaz (biomass yield and/or aboveground part Zn and Cd concentrations) over one life plant cycle. The mycorrhizal rates of A. halleri were measured in situ while the fungal inoculation experiments were carried out under controlled conditions. For the first time, it is demonstrated that the fertilizer used on A. halleri increased its biomass not only at the rosette stage but also at the flowering and fruiting stages. Fertilizer reduced the Zn concentration variability between developmental stages and increased the Cd concentration at fruiting stage. A. halleri roots did not show AMF colonization at any stage in our field conditions, neither in the absence nor in the presence of fertilizer, thus suggesting that A. halleri is not naturally mycorrhizal. Induced mycorrhization agreed with this result. However, S. indica has been shown to successfully colonize A. halleri roots under controlled conditions. This study confirms the benefit of using fertilizer to increase the phytoextraction potential of A. halleri. Overall, these results contribute to the future applicability of A. halleri in a phytomanagement strategy by giving information on its cultural itinerary.
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- 2020
9. Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends of Cancer Research TMB Harmonization Project
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Arnaud Papin, Albrecht Stenzinger, Jonathan F. Baden, Christine K. Ward, Jeff Allen, Rajesh Patidar, Joerg Maas, David Fabrizio, Vikas Gupta, Wangjuh (Sting) Chen, Ruchi Chaudhary, Yali Li, Elena Helman, Naiyer A. Rizvi, Matthew D. Hellmann, J. Carl Barrett, Manfred Dietel, Katie Quinn, Diana M. Merino, Shu-Jen Chen, Hongseok Tae, Jennifer S Dickey, Li Chen, Jen-Hao Cheng, James R. White, Chen Zhao, Mark Stewart, Dinesh Cyanam, Paul Wenz, Ahmet Zehir, Lisa M. McShane, Mingchao Xie, and Vincent Funari
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0301 basic medicine ,Cancer Research ,tumor mutational burden ,Immune checkpoint inhibitors ,In silico ,Immunology ,Guidelines as Topic ,Computational biology ,immune checkpoint inhibitors ,03 medical and health sciences ,0302 clinical medicine ,Cancer genome ,Immunotherapy Biomarkers ,Immunology and Allergy ,Medicine ,Humans ,Computer Simulation ,Head and neck ,Reference standards ,Exome ,RC254-282 ,Predictive biomarker ,Pharmacology ,business.industry ,TMB ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,immunotherapies ,Tumor Burden ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,harmonization ,Mutation ,Molecular Medicine ,biomarker ,business - Abstract
BackgroundTumor mutational burden (TMB), defined as the number of somatic mutations per megabase of interrogated genomic sequence, demonstrates predictive biomarker potential for the identification of patients with cancer most likely to respond to immune checkpoint inhibitors. TMB is optimally calculated by whole exome sequencing (WES), but next-generation sequencing targeted panels provide TMB estimates in a time-effective and cost-effective manner. However, differences in panel size and gene coverage, in addition to the underlying bioinformatics pipelines, are known drivers of variability in TMB estimates across laboratories. By directly comparing panel-based TMB estimates from participating laboratories, this study aims to characterize the theoretical variability of panel-based TMB estimates, and provides guidelines on TMB reporting, analytic validation requirements and reference standard alignment in order to maintain consistency of TMB estimation across platforms.MethodsEleven laboratories used WES data from The Cancer Genome Atlas Multi-Center Mutation calling in Multiple Cancers (MC3) samples and calculated TMB from the subset of the exome restricted to the genes covered by their targeted panel using their own bioinformatics pipeline (panel TMB). A reference TMB value was calculated from the entire exome using a uniform bioinformatics pipeline all members agreed on (WES TMB). Linear regression analyses were performed to investigate the relationship between WES and panel TMB for all 32 cancer types combined and separately. Variability in panel TMB values at various WES TMB values was also quantified using 95% prediction limits.ResultsStudy results demonstrated that variability within and between panel TMB values increases as the WES TMB values increase. For each panel, prediction limits based on linear regression analyses that modeled panel TMB as a function of WES TMB were calculated and found to approximately capture the intended 95% of observed panel TMB values. Certain cancer types, such as uterine, bladder and colon cancers exhibited greater variability in panel TMB values, compared with lung and head and neck cancers.ConclusionsIncreasing uptake of TMB as a predictive biomarker in the clinic creates an urgent need to bring stakeholders together to agree on the harmonization of key aspects of panel-based TMB estimation, such as the standardization of TMB reporting, standardization of analytical validation studies and the alignment of panel-based TMB values with a reference standard. These harmonization efforts should improve consistency and reliability of panel TMB estimates and aid in clinical decision-making.
- Published
- 2020
10. Phytomanagement of a Trace Element-Contaminated Site to Produce a Natural Dye: First Screening of an Emerging Biomass Valorization Chain
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Erik Meers, Jeroen Geuens, Alexandre Perlein, Marcella Fernandes de Souza, Annelore Wens, Rodolphe Gaucher, Valérie Bert, Arnaud Papin, Institut National de l'Environnement Industriel et des Risques (INERIS), Universiteit Gent = Ghent University [Belgium] (UGENT), and Karel de Grote University of Applied Sciences and Arts
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Technology ,Biomass ,Bioconcentration ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Cd ,0202 electrical engineering, electronic engineering, information engineering ,General Materials Science ,Biology (General) ,Instrumentation ,Pb ,Fluid Flow and Transfer Processes ,biology ,MARGINAL LAND ,mallow ,[SDE.IE]Environmental Sciences/Environmental Engineering ,Physics ,General Engineering ,Contamination ,Engineering (General). Civil engineering (General) ,Computer Science Applications ,Chemistry ,Colourant ,Environmental chemistry ,METALS ,TA1-2040 ,dye extraction ,dye test ,Technology and Engineering ,QH301-705.5 ,QC1-999 ,020209 energy ,Malva sylvestris ,ECONOMIC VIABILITY ,Contaminated land ,DIGESTION ,Zn ,MALVA-SYLVESTRIS L ,PLANTS ,QD1-999 ,phytostabilization ,0105 earth and related environmental sciences ,Process Chemistry and Technology ,PHYTOREMEDIATION ,Trace element ,Sediment ,biology.organism_classification ,SOILS ,Earth and Environmental Sciences ,Environmental science - Abstract
The study of different possible biomass valorization routes is crucial in order to diversify phytomanagement options, allowing the landowner/stakeholder to choose the best option based on site characteristics and the benefits of local value chains. In the current study, field and laboratory experiments were conducted to assess the suitabilitity of Malva sylvestris L. for the phytoattenuation of a dredged sediment disposal site contaminated with trace elements (trace element (Cd, Cu, Pb, and Zn). The selected crop was Malva sylvestris, a flowering plant from which a colourant can be extracted to be used in dying of textiles as a way to valorize the produced biomass grown on this contaminated land. Under the conditions of the investigated site, the analysis of TE in the sediment and the biomass matrix showed no effect of M. sylvestris on the sediment TE contamination mobility with an excluder phenotype (Bioconcentration factor <, 1). Metal concentrations were found to be the highest in the leaves followed by in the stem and flower. The dye extract obtained from the flower part of M. sylvestris permitted the silk alum-pretreated fabric to be dyed yellow, and the TE concentration in the dyed textile fabrics respected the threshold values set by OEKO-Tex standard 100.
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- 2021
11. Abstract 5671: Alignment of TMB measured on clinical samples: Phase IIB of the Friends of Cancer Research TMB Harmonization Project
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Vikas Gupta, Arnaud Papin, Warren Tom, Mingchao Xie, Elizabeth P. Garcia, Christopher D. Gocke, Lauryn Keeler, Jen-Hao Cheng, Laura E. MacConaill, Brett Kennedy, Lisa Haley, David Fabrizio, Ethan Sokol, Jeff Allen, Sean T. Glenn, Laurel Keefer, Jeffrey M. Conroy, J. Carl Barrett, Shu-Jen Chen, Matthew D. Hellmann, Laura M. Yee, Lisa M. McShane, Alexander J. Lazar, Diana M. Merino, Chen Zhao, Rajesh Patidar, Victor J. Weigman, Vincent Funari, Naiyer A. Rizvi, Kristen Meier, John F. Thompson, Kenneth R. Eyring, Tomas Vilimas, Mark Stewart, Dinesh Cyanam, Phillip Stafford, and P. Mickey Williams
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0301 basic medicine ,Measurement variability ,Cancer Research ,business.industry ,Immune checkpoint inhibitors ,Cancer type ,Sample Median ,Unmet needs ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Gene panel ,Cancer research ,Medicine ,Gastric tumor ,business ,Predictive biomarker - Abstract
Introduction: Tumor mutational burden (TMB) is the number of somatic mutations per megabase in a tumor's genome and has shown promise as a predictive biomarker of response to immune checkpoint inhibitors across several cancers. TMB is typically measured by whole exome sequencing (WES TMB) or by targeted next-generation sequencing gene panels (panel TMB). As more assays are developed to estimate TMB, harmonization is emerging as an unmet need and is a key goal of the Friends of Cancer Research (Friends) TMB Harmonization Project. Phase I of the Harmonization Project demonstrated correlation between panel TMB and WES TMB using TCGA data and defined theoretical sources of variability across panels. In phase IIA, sustainable TMB reference standard materials generated from human derived cell lines were used to characterize variability in TMB measurements across panels and assessed for utility in TMB alignment. Phase IIB aims to characterize variability in TMB measurements in clinical samples and to establish best practices for estimating and aligning TMB in order to improve consistency across panels. Methods: Fifteen laboratories (16 targeted gene panels) at different stages of development participated in phase IIB. Thirty formalin-fixed paraffin-embedded (FFPE) samples with >30% tumor content were acquired; tumor DNA was isolated by a single reference lab. TMB values were calculated for DNA extracted from lung (N=10), bladder (N=10), and gastric tumors (N=10) using WES and a uniform bioinformatics pipeline agreed upon by all Consortium members. DNA samples were also sent to all laboratories, and each used their own sequencing and bioinformatics pipelines to estimate TMB from the genes represented in their respective panels. For each tumor sample, a median across panel TMB estimates was calculated; individual panel TMB estimates were translated to fold-changes relative to the sample median to quantify variability. Association between WES TMB (reference) and panel TMB will be assessed by regression analysis; dependence of association on cancer type was investigated. Results: A subset of tumor samples (9 bladder, 7 lung, and 5 gastric) was analyzed using 11 panels at the time of abstract submission. Median panel TMB values ranged 0.60 - 40.26 across samples, with median of median values of 5.35. Fold-change from sample-level medians ranged 0x - 6.67x. Assessment of these clinical samples by WES and all 16 gene panels, as well as regression analysis results, are forthcoming. Conclusions: The Friends TMB Harmonization Project has made substantial progress in characterization of TMB measurement variability and association between WES TMB and panel TMB. These are important steps toward alignment of TMB estimates generated by different gene panels which may improve the interpretation of findings within clinical development programs and ultimately enhance the usefulness of this predictive biomarker in clinical decision making. Citation Format: Diana M. MERINO, Laura M. Yee, Lisa M. McShane, P. Mickey Williams, Tomas Vilimas, Rajesh Patidar, J. Carl Barrett, Shu-Jen Chen, Jen-Hao Cheng, Jeffrey M. Conroy, Dinesh Cyanam, Kenneth R. Eyring, David A. Fabrizio, Vincent Funari, Elizabeth P. Garcia, Sean T. Glenn, Christopher D. Gocke, Vikas Gupta, Lisa M. Haley, Matthew D. Hellmann, Laurel Keefer, Lauryn R. Keeler, Brett Kennedy, Alexander J. Lazar, Laura E. MacConaill, Kristen L. Meier, Arnaud Papin, Naiyer A. Rizvi, Ethan Sokol, Phillip Stafford, John F. Thompson, Warren Tom, Victor J. Weigman, Mingchao Xie, Chen Zhao, Mark D. Stewart, Jeff Allen. Alignment of TMB measured on clinical samples: Phase IIB of the Friends of Cancer Research TMB Harmonization Project [abstract]. In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 5671.
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- 2020
12. Effect of mycorrhizal inoculation on metal accumulation by poplar leaves at phytomanaged sites
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Michel Chalot, Valérie Bert, Phonethip Phanthavongsa, Arnaud Papin, Laurence Lacercat-Didier, Damien Blaudez, Sébastien Roy, Institut National de l'Environnement Industriel et des Risques (INERIS), Laboratoire Chrono-environnement - CNRS - UBFC (UMR 6249) (LCE), Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC), Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), and Agronutrition
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2. Zero hunger ,0106 biological sciences ,Populus trichocarpa ,[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,biology ,Environmental remediation ,Chemistry ,Inoculation ,Growing season ,Biomass ,Plant Science ,15. Life on land ,010501 environmental sciences ,biology.organism_classification ,01 natural sciences ,Abscission ,Agronomy ,Soil water ,Cultivar ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics ,ComputingMilieux_MISCELLANEOUS ,010606 plant biology & botany ,0105 earth and related environmental sciences - Abstract
Phytotechnologies for the management of lands contaminated with potentially toxic elements (PTEs) are considered as gentle alternatives to conventional remediation techniques. During the last few years, phytotechnologies have progressively shifted to phytomanagement, a concept that includes the valorization of the plant biomass produced on the contaminated site. This study aimed at evaluating the mid-term effect of ecto- and endomycorrhizal inoculation on the reduction of PTE mobility in soils and foliar accumulation by two poplar clones, Skado ( Populus trichocarpa x P. maximowiczii ) and I-214 ( P. deltoides x P. nigra ), dedicated to bioenergy purposes. The effects of inoculation were investigated in two large scale trials of 1 ha each. Poplars grown on highly contaminated soils accumulated excessive Cd and Zn in leaves compared with those planted on less contaminated soils, and the I-214 clone generally accumulated less PTEs than the Skado clone. Interestingly, the filtering capacity of mycorrhizal fungi was significant for Zn, Cu, Pb and Cr in Skado leaves only at the most contaminated areas after two growing seasons. These foliar concentrations were not correlated with Ca(NO 3 ) 2 -extractable concentrations in soils, suggesting that mycorrhizal fungi limited PTE translocation from roots to leaves without impacting PTE mobility in soils. Therefore, the reduction of PTE accumulation in poplar leaves may be optimized by selecting appropriate combinations of cultivars and inocula at specific PTE levels and soil conditions. Because Cd and Zn may pose a risk after leaf abscission and wood harvest, further research is needed to efficiently reduce Cd and Zn concentrations in poplar tissues. Otherwise, the phytomanagement of metal contaminated sites with poplars should include options to safely manage both leaves and wood.
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- 2017
13. Poplar biomass production at phytomanagement sites is significantly enhanced by mycorrhizal inoculation
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Arnaud Papin, Julie Foulon, Loïc Yung, Olivier Girardclos, Cyril Zappelini, Michel Chalot, Valérie Bert, Damien Blaudez, Lisa Ciadamidaro, Sébastien Roy, Laboratoire Chrono-environnement - CNRS - UBFC (UMR 6249) (LCE), Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC), Institut National de l'Environnement Industriel et des Risques (INERIS), Agronutrition, Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Chrono-environnement ( LCE ), Université Bourgogne Franche-Comté ( UBFC ) -Centre National de la Recherche Scientifique ( CNRS ) -Université de Franche-Comté ( UFC ), Institut National de l'Environnement Industriel et des Risques ( INERIS ), Laboratoire Interdisciplinaire des Environnements Continentaux ( LIEC ), and Université de Lorraine ( UL ) -Centre National de la Recherche Scientifique ( CNRS )
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2. Zero hunger ,0106 biological sciences ,[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,Bioaugmentation ,Inoculation ,food and beverages ,Biomass ,Plant Science ,15. Life on land ,010501 environmental sciences ,Contamination ,Biology ,01 natural sciences ,Soil contamination ,[ SDV.EE ] Life Sciences [q-bio]/Ecology, environment ,Bioremediation ,Soil structure ,Agronomy ,Afforestation ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics ,ComputingMilieux_MISCELLANEOUS ,010606 plant biology & botany ,0105 earth and related environmental sciences - Abstract
Afforestation of trace element (TE)-contaminated soil, notably with fast growing trees producing large biomass has been demonstrated to be an attractive option for their bioremediation. Mycorrhizal fungi can form symbiotic associations with plants, contributing to TE tolerance and participating actively in bioremediation processes. We studied the effects of mycorrhizal inoculation on the growth of two poplar clones (Skado and I214), to large-scale. Two TE-contaminated sites of ca . 1 ha (Pierrelaye and Fresnes-sur-Escaut, France) were planted with 2200 trees, and were either inoculated with a mixed commercial inoculum or not-inoculated and allometric parameters were determined after 2 and 4 years of growth. The height diameter relationships remained linear overtime, although the second period of the experiment has been more favorable to growth of the Skado clone and its survival rates were higher compared than those of the I214 clone, at both sites. The inoculation with mycorrhizal significantly impacted the biomass production of the Skado clone at both sites, despite striking differences in soil structure and contamination. In overall, this bioaugmentation option with mycorrhizal fungi influenced more poplar growth than soil contamination and highly improved its biomass production.
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- 2017
14. Torrefaction and pyrolysis of metal-enriched poplars from phytotechnologies: Effect of temperature and biomass chlorine content on metal distribution in end-products and valorization options
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Philippe Sajet, Arnaud Papin, Cécile Raventos, Julienne Allemon, Sébastien Dieu, Serge Collet, Valérie Bert, Rodolphe Gaucher, Michel Chalot, Boudewijn Michiels, Institut National de l'Environnement Industriel et des Risques (INERIS), Espace Bleu, Centre de Recherche en Cancérologie / Nantes - Angers (CRCNA), Centre hospitalier universitaire de Nantes (CHU Nantes)-Faculté de Médecine d'Angers-Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM)-PRES Université Nantes Angers Le Mans (UNAM)-Centre National de la Recherche Scientifique (CNRS)-Hôpital Laennec-Institut National de la Santé et de la Recherche Médicale (INSERM)-Hôtel-Dieu de Nantes, Institut National de la Recherche Agronomique (INRA), Laboratoire Chrono-environnement - UFC (UMR 6249) (LCE), Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC), Research Institute for Nature and Forest, Centre de Recherche en Cancérologie Nantes-Angers (CRCNA), Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM)-PRES Université Nantes Angers Le Mans (UNAM)-Hôtel-Dieu de Nantes-Institut National de la Santé et de la Recherche Médicale (INSERM)-Hôpital Laennec-Centre National de la Recherche Scientifique (CNRS)-Faculté de Médecine d'Angers-Centre hospitalier universitaire de Nantes (CHU Nantes), Laboratoire Chrono-environnement - CNRS - UBFC (UMR 6249) (LCE), Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC)-Centre National de la Recherche Scientifique (CNRS), Research Institute for Nature and Forest (INBO), Institut National de l'Environnement Industriel et des Risques ( INERIS ), Centre de Recherche en Cancérologie / Nantes - Angers ( CRCNA ), CHU Angers-Centre hospitalier universitaire de Nantes ( CHU Nantes ) -Hôtel-Dieu de Nantes-Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Hôpital Laennec-Centre National de la Recherche Scientifique ( CNRS ) -Faculté de Médecine d'Angers, Institut National de la Recherche Agronomique ( INRA ), Laboratoire Chrono-environnement ( LCE ), and Université Bourgogne Franche-Comté ( UBFC ) -Centre National de la Recherche Scientifique ( CNRS ) -Université de Franche-Comté ( UFC )
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[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,Volatilisation ,Renewable Energy, Sustainability and the Environment ,Chemistry ,020209 energy ,Biomass ,chemistry.chemical_element ,Forestry ,02 engineering and technology ,Torrefaction ,Soil contamination ,[ SDV.EE ] Life Sciences [q-bio]/Ecology, environment ,Metal ,visual_art ,Environmental chemistry ,Botany ,Biochar ,0202 electrical engineering, electronic engineering, information engineering ,visual_art.visual_art_medium ,Chlorine ,Waste Management and Disposal ,Agronomy and Crop Science ,Pyrolysis ,ComputingMilieux_MISCELLANEOUS - Abstract
Torrefaction (290 °C) and pyrolysis (450 and 800 °C) trials were performed at pilot scale with a patented reactor on metal-enriched poplars from a contaminated soil managed by phytotechnologies and poplars cultivated on uncontaminated soil, for comparison. This study emphasized the influence of temperature on end-product yield, metal distribution in end-products and metal behavior. Results showed that the evolution of the end-product yield, i.e. biochar, bio-oil and gas fractions, was depending on temperature rather than other parameters such as the origin or metal content of the tested poplars. Torrefaction decreased the processed poplars weight, leading to metal-enriched torrefied biomass as a major end-product. At 450 and 800 °C, metal behavior was governed by temperature. Nevertheless, the different chlorine content of initial biomass was hypothesized to be an important factor that could modify the metal behavior by increasing metal volatilization at process temperatures. Amongst the studied metals, Zn and Pb were hypothesized to form volatile metal chlorides, therefore increased metal volatilization from Control poplar biomass could be explained by increased chlorine content of such biomass. At 450 °C, metals were recovered in biochar, then in bio-oil and finally in gases. At 800 °C, similar results were obtained for Cu, confirming that Cu was not easily volatilized. On the contrary, Zn, Pb and Cd were mostly recovered in gases, which became the second metal recovery compartment. According to metal concentrations, valorization options were discussed for end-products.
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- 2017
15. TMB standardization by alignment to reference standards: Phase II of the Friends of Cancer Research TMB Harmonization Project
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Shu-Jen Chen, Victor J Weigman, Chen Zhao, Arnaud Papin, Matthew James Butler, Laura E. MacConaill, Vincent Funari, David Fabrizio, Ahmet Zehir, Aparna Pallavajjala, Diana M. Merino, Jeffrey M. Conroy, Ruchi Chaudhary, Paul M. Williams, Wangjuh Sting Chen, Matthew D. Hellmann, Mark Sausen, Lisa M. McShane, and Mingchao Xie
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Cancer Research ,Standardization ,business.industry ,Immune checkpoint inhibitors ,Harmonization ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Medicine ,business ,Reference standards ,030215 immunology ,Predictive biomarker - Abstract
2624 Background: Tumor mutational burden (TMB) is a predictive biomarker of response to immune checkpoint inhibitors across multiple cancers. In Phase 1 of the Friends of Cancer Research Harmonization Project, we demonstrated a robust correlation between TMB estimated using targeted next-generation sequencing (NGS) gene panels and whole exome sequencing (WES) applied to MC3-TCGA data. These findings demonstrated variability in TMB estimates across different panels. Phase 2 evaluates sustainable TMB reference standard materials for TMB alignment to assess this variability. The goal of this effort is to establish best practices for estimating TMB in order to improve consistency across panels, for the sake of optimizing clinical application and facilitating integration of datasets generated from multiple assays. Methods: Fifteen laboratories with targeted panels at different stages of development participated. We identified a set of reference standards consisting of 10 well-characterized human-derived lung and breast tumor-normal matched cell lines. WES was performed using a uniform bioinformatics pipeline agreed upon by all team members (WES-TMB). Each laboratory used their own sequencing and bioinformatics pipelines (tumor-only and tumor-normal) to estimate TMB according to genes represented in their respective panels (panel-TMB). The association between WES-TMB and each panel-TMB was investigated using regression analyses. Bias (relative to WES-TMB) and variability in TMB estimates across panels were rigorously assessed. All analyses were blinded. Results: The set of reference standards spanned a clinically meaningful TMB range (4.3 to 31.4 mut/Mb). Preliminary data from 12 laboratories shows a good correlation between panel-TMB and WES-TMB in this empirical analysis. Across panels, regression R2 values range 0.77-0.96 with slopes ranging 0.60-1.26. Calibration analyses that seek to minimize variability of TMB estimates across panels using the established set of reference standards are ongoing, as well as investigating cancer type dependence on the relationship between panel-TMB vs. WES-TMB, which will be available at the time of presentation. Conclusions: Preliminary findings demonstrate feasibility of using sustainable reference control cell lines to standardize and align estimation of TMB across different targeted NGS assays. Future studies aim to validate reference standard material as a reliable alignment tool by using formalin-fixed paraffin-embedded human tumor samples.
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- 2019
16. Essais à grande échelle de phytostabilisation aidée couplée à une valorisation biomasse en bois énergie
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Valérie Bert, Battle Karimi, Mohamad Assad, Damien Blaudez, Olivier Girardclos, Pierre Boucard, Cécile Raventos, Sébastien Roy, Arnaud Papin, Michel CHALOT, Institut National de l'Environnement Industriel et des Risques (INERIS), Laboratoire Chrono-environnement - CNRS - UBFC (UMR 6249) (LCE), Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire Terre et Environnement de Lorraine (OTELo), Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Agronutrition, and Civs, Gestionnaire
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[SDE] Environmental Sciences ,[SDE]Environmental Sciences - Abstract
National audience; Les projets PHYTOSED échelle 1 et BIOFILTREE ont comme objectifs de démontrer la pertinence de la phytostabilisation aidée couplée à la valorisation de la biomasse en bois-énergie. A grande échelle, sur plusieurs hectares de terres polluées par les éléments traces, la technique de phytostabilisation aidée a été mise en oeuvre en testant des protocoles différents (ex : amendement chimique dans le cas de PHYTOSED Echelle 1 et amendement biologique dans le cas de BIOFILTREE). Le retour d’expérience a permis de valider l’utilisation d’espèces végétales pertinentes pour la phytostabilisation (ex : canche cespiteuse, peupliers SKADO) et de définir des protocoles pour la mise en oeuvre de cette technique en fonction des caractéristiques des sols pollués. Les résultats issus de la première année de suivi ne mettent pas en évidence d’effet significatif des amendements sur la diminution des transferts de Zn et de Cd dans les feuilles des espèces végétales étudiées (canche, saules, peupliers). En revanche, l’inoculation de peupliers SKADO a un effet positif sur le rendement en biomasse de ces arbres. La poursuite de l’analyse des transferts de polluants vers les parties récoltables des végétaux devrait permettre de vérifier l’effet des amendements sur ce paramètre et d’orienter les végétaux vers une filière de valorisation pertinente.
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- 2014
17. Method development and inter-laboratory comparison about the determination of titanium from titanium dioxide nanoparticles in tissues by inductively coupled plasma mass spectrometry
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Jutta Tentschert, Mario E. Goetz, Benedicte Trouiller, Yacine Nia, Laurent Noël, Andreas Luch, Thierry Guérin, Wim H. de Jong, Arnaud Papin, Petra Krystek, Philips Innovation Services, Eindhoven, Philips Innovation Services, Bundesinstitut für Risikobewertung - Federal Institute for Risk Assessment (BfR), Laboratoire de sécurité des aliments de Maisons-Alfort (LSAl), Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Institut National de l'Environnement Industriel et des Risques (INERIS), National Institute for Public Health and the Environment [Bilthoven] (RIVM), NANOGENOTOX Joint Action (n°2009-21), NANONEXT.nl, and BfR (SFP 1322-527)
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Male ,INTER-LABORATORY COMPARISON ,Analytical chemistry ,chemistry.chemical_element ,Biochemistry ,Mass Spectrometry ,Analytical Chemistry ,Nanomaterials ,Metal ,chemistry.chemical_compound ,Hydrofluoric acid ,Nitric acid ,Animals ,Sample preparation ,Rats, Wistar ,Inductively coupled plasma mass spectrometry ,TISSUE DISTRIBUTION ,Titanium ,MESH: Mass Spectrometry ,Radiochemistry ,Animal Structures ,TITANIUM DIOXIDE NANOPARTICLES ,Rats ,INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY ,MESH: Titanium ,chemistry ,[SDV.TOX]Life Sciences [q-bio]/Toxicology ,visual_art ,[SDE]Environmental Sciences ,Titanium dioxide ,visual_art.visual_art_medium ,Nanoparticles ,Laboratories ,MESH: Nanoparticles - Abstract
International audience; Nanosized titanium dioxide (TiO2) is one of the most interesting and valuable nanomaterials for the construction industry but also in health care applications, food, and consumer goods, e.g., cosmetics. Therefore, the properties associated with this material are described in detail. Despite its widespread use, the analytical determination and characterization of nanosized metal oxides is not as straightforward as the comparatively easy-to-detect metallic nanoparticles (e.g., silver or gold). This study presents the method development and the results of the determination of tissue titanium (Ti) levels after treatment of rats with the nanosized TiO2. Total Ti levels were chosen to evaluate the presence and distribution of TiO2 nanoparticles. A procedure consisting of incubation with a mixture of nitric acid (HNO3) and hydrofluoric acid (HF), and heating was developed to digest tissues and TiO2 nanomaterials in order to determine the total Ti content by inductively coupled plasma mass spectrometry (ICPMS). For the inter-laboratory comparison, altogether four laboratories analyzed the same samples upon digestion using the available ICPMS equipment. A major premise for any toxicokinetic study is the possibility to detect the chemical under investigation in biological samples (tissues). So, the study has to be performed with a dose high enough to allow for subsequent tissue level measurement of the chemical under investigation. On the other hand, dose of the chemical applied should not induce over toxicity in the animal as this may affect its absorption, distribution, metabolism, and excretion. To determine a non-toxic TiO2 dosage, an acute toxicity study in rats was performed, and the organs obtained were evaluated for the presence of Ti by ICPMS. Despite the differences in methodology and independent of the sample preparation and the ICPMS equipment used, the results obtained for samples with Ti concentrations >4 µg Ti/g tissue agreed well.
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- 2014
18. Intersite OH-F distribution in an Al-rich synthetic phlogopite
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Jean-Louis Robert, Arnaud Papin, and Jose Sergent
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Geochemistry and Petrology ,engineering ,Analytical chemistry ,Mineralogy ,Phlogopite ,engineering.material ,Geology - Published
- 1997
19. The evaluation of an analytical protocol for the determination of substances in waste for hazard classification
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Jean-Marie Padox, Benoît Hasebrouck, Pierre Hennebert, and Arnaud Papin
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Screening techniques ,Hazardous Waste ,Volatile Organic Compounds ,Waste management ,Chemistry ,Industrial Waste ,Heavy metals ,Hydrogen-Ion Concentration ,Mass spectrometry ,Solid Waste ,Polychlorinated Biphenyls ,Gas Chromatography-Mass Spectrometry ,Europe ,Vegetable oil ,Waste Management ,Hazardous waste ,Metals ,Screening method ,Gas chromatography ,France ,Waste Management and Disposal ,Analytical balance - Abstract
The classification of waste as hazardous could soon be assessed in Europe using largely the hazard properties of its constituents, according to the the Classification, Labelling and Packaging (CLP) regulation. Comprehensive knowledge of the component constituents of a given waste will therefore be necessary. An analytical protocol for determining waste composition is proposed, which includes using inductively coupled plasma (ICP) screening methods to identify major elements and gas chromatography/mass spectrometry (GC-MS) screening techniques to measure organic compounds. The method includes a gross or indicator measure of 'pools' of higher molecular weight organic substances that are taken to be less bioactive and less hazardous, and of unresolved 'mass' during the chromatography of volatile and semi-volatile compounds. The concentration of some elements and specific compounds that are linked to specific hazard properties and are subject to specific regulation (examples include: heavy metals, chromium(VI), cyanides, organo-halogens, and PCBs) are determined by classical quantitative analysis. To check the consistency of the analysis, the sum of the concentrations (including unresolved 'pools') should give a mass balance between 90% and 110%. Thirty-two laboratory samples comprising different industrial wastes (liquids and solids) were tested by two routine service laboratories, to give circa 7000 parameter results. Despite discrepancies in some parameters, a satisfactory sum of estimated or measured concentrations (analytical balance) of 90% was reached for 20 samples (63% of the overall total) during this first test exercise, with identified reasons for most of the unsatisfactory results. Regular use of this protocol (which is now included in the French legislation) has enabled service laboratories to reach a 90% mass balance for nearly all the solid samples tested, and most of liquid samples (difficulties were caused in some samples from polymers in solution and vegetable oil). The protocol is submitted to French and European normalization bodies (AFNOR and CEN) and further improvements are awaited.
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- 2012
20. Assessing in near real time the impact of the April 2010 Eyjafjallajökull ash plume on air quality
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Laurent Menut, Olivier Favez, Yohann Morille, Martial Haeffelin, Laura Chiappini, Laurence Rouil, Arnaud Papin, Eva Leoz, Augustin Colette, Laure Malherbe, Bertrand Bessagnet, Frédérik Meleux, Institut National de l'Environnement Industriel et des Risques (INERIS), Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Météorologie Dynamique (UMR 8539) (LMD), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-École des Ponts ParisTech (ENPC)-Centre National de la Recherche Scientifique (CNRS)-Département des Géosciences - ENS Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), École normale supérieure - Paris (ENS Paris), Département des Géosciences - ENS Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-École des Ponts ParisTech (ENPC)-École polytechnique (X)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC), École normale supérieure - Paris (ENS Paris)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), and École normale supérieure - Paris (ENS Paris)-École normale supérieure - Paris (ENS Paris)
- Subjects
Atmospheric Science ,010504 meteorology & atmospheric sciences ,Meteorology ,Air pollution ,010501 environmental sciences ,Particulates ,Atmospheric dispersion modeling ,Chemistry transport modelling ,medicine.disease_cause ,01 natural sciences ,[SDE.ES]Environmental Sciences/Environmental and Society ,Aerosol ,Plume ,Troposphere ,Long range transport ,Eyjafjallajökull ,13. Climate action ,Air quality ,medicine ,Environmental science ,Lidar remote sensing ,Air quality index ,0105 earth and related environmental sciences ,General Environmental Science ,Volcanic ash - Abstract
5 p.; International audience; The eruption of the Eyjafjallajökull in April 2010 led to the injection in the troposphere of an important quantity of volcanic ash whose advection towards densely populated areas raised serious concerns regarding potential impacts on air quality. Here we investigate to what extent air quality in France was altered using exclusively quantitative data that was available in near real-time. We rely on a combination of atmospheric dispersion modelling, ground-based remote sensing, and chemical characterization of airborne particles. One week after the onset of the eruption we were able to conclude that the Eyjafjallajökull ash plume was locally responsible for an increase of up to 30 +/- 10 µgm-3 of total PM10 (particulate matter finer than 10 µm) that reached 65 mg m-3 on 18 and 19 April 2010. The methodology presented in this letter offers promising perspectives in terms of emergency response strategy when facing such unforeseen atmospheric dispersion events.
- Published
- 2010
21. Assessment of the impact of the Eyjafjallajokull's eruption on surface air quality in France
- Author
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Augustin Colette, Nicolas Alsac, Bertrand Bessagnet, Hugues Biaudet, Laura Chiappini, Olivier Favez, Emeric FREJAFON, François Gautier, Fabrice Godefroy, Martial Haeffelin, Eva Leoz, Laure Malherbe, Frédérik Meleux, Laurent Menut, Yohann Morille, Arnaud Papin, Christophe Pietras, Martine Ramel, Laurence Rouil, Institut National de l'Environnement Industriel et des Risques (INERIS), Laboratoire de Météorologie Dynamique (UMR 8539) (LMD), Département des Géosciences - ENS Paris, École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-École des Ponts ParisTech (ENPC)-École polytechnique (X)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-École des Ponts ParisTech (ENPC)-Centre National de la Recherche Scientifique (CNRS)-Département des Géosciences - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), and Civs, Gestionnaire
- Subjects
[SDE] Environmental Sciences ,[SDE]Environmental Sciences - Published
- 2010
22. A Mössbauer and FTIR study of synthetic amphiboles along the magnesioriebeckite – ferri-clinoholmquistite join
- Author
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Giancarlo Della Ventura, Jean-Louis Robert, Günther J. Redhammer, Arnaud Papin, Gianluca Iezzi, Frank C. Hawthorne, DELLA VENTURA, Giancarlo, REDHAMMER G., J, Iezzi, G, HAWTHORNE F., C, Papin, A, Robert, J. L., Dipartimento di Scienze Geologiche [Roma TRE], Università degli Studi Roma Tre, Institute of Crystallography [Aachen], Rheinisch-Westfälische Technische Hochschule Aachen (RWTH), Institut des Sciences de la Terre d'Orléans (ISTO), Institut national des sciences de l'Univers (INSU - CNRS)-Université d'Orléans (UO)-Centre National de la Recherche Scientifique (CNRS), Department of Geological Sciences (DEPARTMENT OF GEOLOGICAL SCIENCES), and Université de Manitoba
- Subjects
Arfvedsonite ,010504 meteorology & atmospheric sciences ,Cation ordering ,Chemistry ,Mössbauer spectroscopy ,Infrared spectroscopy ,Magnesioriebeckite ,Quadrupole splitting ,Synthetic amphiboles ,010502 geochemistry & geophysics ,01 natural sciences ,Crystallography ,FTIR spectroscopy ,Nuclear magnetic resonance ,Octahedron ,Geochemistry and Petrology ,[SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/Geochemistry ,Quadrupole ,General Materials Science ,Hyperfine structure ,Ferri-clinoholmquistite ,Amphibole ,0105 earth and related environmental sciences - Abstract
A series of amphiboles along the magnesioriebeckite - square Na2Mg3Fe3+ 2Si8O22(OH)(2)- ferri-clinoholmquistite - circle Li2Mg3Fe3+ 2Si8O22(OH)2 - join, defined by the Li-B(B) Na-1 exchange vector, were hydrothermally synthesized at 700 degrees C, 0.4 GPa, NNO + 1 redox conditions. Powder XRD and SEM-EDAX showed a very high (> 90%) amphibole yield for all samples. X-ray patterns were indexed in the C2/m space group; refined cell-parameters show a linear decrease of alpha and beta as a function of chemistry. IR spectra in the OH-stretching region show four main and rather sharp bands; these are assigned to Mg and Fe2+ at M(1,3), and indicate that the obtained amphiboles depart from the nominal octahedral composition (Mg-M1,3(3)). The IR spectra also show that there is an increasing filling-up of the A-site for increasing Na in the system (increasing solid-solution toward, arfvedsonite). Mossbauer spectra show four well-defined quadrupole doublets which are assigned to Fe3+ at M2 and to Fe2+ at M1, M3 and M4, respectively. The Fe3+/Fe2+ content derived from fitted peak areas show variable Fe3+ concentration along the series. Mossbauer spectra also show a distinct alteration of Fe-57 hyperfine parameters with changing Na-Li at M4. The most evident variation is observed for the quadrupole splitting of Fe3+ at M2, which increases by approximate to 50% from ferri-clinoholmquistite to magnesio-riebeckite; this suggest that the M2 octahedron in ferri-clinoholmquistite is much closer to the ideal geometry than the M2 octahedron in magnesio-riebeckite. Mossbauer spectra show also a well-defined increase in the Fe2+ quadrupole splitting of the M1 and M3 octahedra, which is attributed to the Na-Li distribution at the B-sites.
- Published
- 2005
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