165 results on '"A. F. Vale"'
Search Results
2. Author Correction: Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations
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Harry A. Thorpe, Elise Tourrette, Koji Yahara, Filipa F. Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Yoshio Yamaoka, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios N. Sgouras, Wael Elamin, Ben Pascoe, Samuel K. Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, and Daniel Falush
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Multidisciplinary ,General Physics and Astronomy ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology - Published
- 2023
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3. Intraspecific genetic variation in host vigour, viral load and disease tolerance during Drosophila C virus infection
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Megan A. M. Kutzer, Vanika Gupta, Kyriaki Neophytou, Vincent Doublet, Katy M. Monteith, and Pedro F. Vale
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resistance ,tolerance ,Drosophila C virus ,General Neuroscience ,Immunology ,viral infection ,General Biochemistry, Genetics and Molecular Biology - Abstract
Genetic variation for resistance and disease tolerance has been described in a range of species. In Drosophila melanogaster , genetic variation in mortality following systemic Drosophila C virus (DCV) infection is driven by large-effect polymorphisms in the restriction factor pastrel (pst) . However, it is unclear if pst contributes to disease tolerance. We investigated systemic DCV challenges spanning nine orders of magnitude, in males and females of 10 Drosophila Genetic Reference Panel lines carrying either a susceptible (S) or resistant (R) pst allele. We find among-line variation in fly survival, viral load and disease tolerance measured both as the ability to maintain survival (mortality tolerance) and reproduction (fecundity tolerance). We further uncover novel effects of pst on host vigour, as flies carrying the R allele exhibited higher survival and fecundity even in the absence of infection. Finally, we found significant genetic variation in the expression of the JAK-STAT ligand upd3 and the epigenetic regulator of JAK-STAT G9a. However, while G9a has been previously shown to mediate tolerance of DCV infection, we found no correlation between the expression of either upd3 or G9a on fly tolerance or resistance. Our work highlights the importance of both resistance and tolerance in viral defence.
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- 2023
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4. The immune regulation and epidemiological consequences of immune priming inDrosophila
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Arun Prakash, Florence Fenner, Biswajit Shit, Tiina S. Salminen, Katy M. Monteith, Imroze Khan, and Pedro F. Vale
- Abstract
Invertebrates lack the specialized immune-memory cells responsible for vertebrate-like acquired immunity. However, there is increasing evidence that past infection by the same pathogen can ‘prime’ the insect immune response, resulting in improved survival upon reinfection. The mechanisms underlying these phenomenological accounts of priming are diverse, and often not completely clear. Here, we investigated the generality, specificity and mechanistic basis of immune priming in the fruit flyDrosophila melanogasterwhen infected with the gram-negative bacterial pathogenProvidencia rettgeri. We further explore the epidemiological consequences of immune priming and find it has the potential to curtail pathogen transmission by reducing pathogen shedding. We find that priming inDrosophilais a long-lasting, pathogen-specific response, occurring in several fly genetic backgrounds and is particularly stronger in male flies. Mechanistically, we find that the enhanced survival of individuals primed with an initial non-lethal bacterial inoculum coincides with a transient decrease in bacterial loads, and that this is likely driven by the IMD-responsive antimicrobial-peptideDiptericin-Bin the fat body. Further, we show that whileDiptericinsare required as the effector of bacterial clearance, it is not solely sufficient for immune priming, and requires regulation by the peptidoglycan recognition proteinsPGRP-LB, PGRP-LCandPGRP-LE. We discuss potential explanations for the observed sex differences in priming, and discuss the epidemiological consequences of innate immune priming in invertebrates.Author summaryImmunisation using attenuated or inactivated pathogens remains one of the most successful public health practices to reduce the incidence of infectious diseases. Immunisation works because humans and other vertebrate animals have evolved an immune response capable of specific immune memory, which ensures a strong, precise, and effective response to a secondary infection. While invertebrates lack the vertebrate-like specialized immune memory cells responsible for acquired immunity, there is now substantial evidence that invertebrates are capable of immune priming, characterised by improved survival to a pathogenic infection following an initial exposure to an attenuated or inactivated pathogen. Here, we investigated the occurrence, generality, specificity and mechanistic basis of immune priming in fruit flies when infected with the gram-negative pathogenProvidencia rettgeri. We find that priming with an initial non-lethal bacterial inoculum results increased survival after a secondary lethal challenge with the same live bacterial pathogen, and that this protective response may last at least two weeks after the initial exposure, is particularly strong in male flies, and occurs in several genetic backgrounds. We also find that primed flies shed less pathogen during infection, suggesting that priming can be a useful tool to reduce pathogen transmission in insects.
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- 2023
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5. Ageing leads to reduced specificity of antimicrobial peptide responses in drosophila melanogaster
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Biswajit Shit, Arun Prakash, Saubhik Sarkar, Pedro F. Vale, and Imroze Khan
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antimicrobial peptides ,General Immunology and Microbiology ,ageing ,immune senescence ,pathogen resistance ,sexual dimorphism ,immune specificity ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology ,General Environmental Science - Abstract
Evolutionary theory predicts a late-life decline in the force of natural selection, possibly leading to late-life deregulations of the immune system. A potential outcome of such deregulations is the inability to produce specific immunity against target pathogens. We tested this possibility by infecting multiple Drosophila melanogaster lines (with bacterial pathogens) across age groups, where either individual or different combinations of Imd- and Toll-inducible antimicrobial peptides (AMPs) were deleted using CRISPR gene editing. We show a high degree of non-redundancy and pathogen-specificity of AMPs in young flies: in some cases, even a single AMP could confer complete resistance. However, ageing led to drastic reductions in such specificity to target pathogens, warranting the action of multiple AMPs across Imd and Toll pathways. Moreover, use of diverse AMPs either lacked survival benefits or even accompanied survival costs post-infection. These features were also sexually dimorphic: females required a larger repertoire of AMPs than males but extracted equivalent survival benefits. Finally, age-specific expansion of the AMP-repertoire was accompanied with ageing-induced downregulation of negative-regulators of the Imd pathway and damage to renal function post-infection, as features of poorly regulated immunity. Overall, we could highlight the potentially non-adaptive role of ageing in producing less-specific AMP responses, across sexes and pathogens.
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- 2022
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6. Variation in mitochondrial DNA affects locomotor activity and sleep in Drosophila melanogaster
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Lucy Anderson, M. Florencia Camus, Katy M. Monteith, Tiina S. Salminen, Pedro F. Vale, Tampere University, and BioMediTech
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Male ,Adenosine Triphosphate ,Drosophila melanogaster ,Genetics ,Animals ,Drosophila ,Female ,3111 Biomedicine ,Sleep ,DNA, Mitochondrial ,Locomotion ,Genetics (clinical) ,Mitochondria - Abstract
Mitochondria are organelles that produce cellular energy in the form of ATP through oxidative phosphorylation, and this primary function is conserved among many taxa. Locomotion is a trait that is highly reliant on metabolic function and expected to be greatly affected by disruptions to mitochondrial performance. To this end, we aimed to examine how activity and sleep vary between Drosophila melanogaster strains with different geographic origins, how these patterns are affected by mitochondrial DNA (mtDNA) variation, and how breaking up co-evolved mito-nuclear gene combinations affect the studied activity traits. Our results demonstrate that Drosophila strains from different locations differ in sleep and activity, and that females are generally more active than males. By comparing activity and sleep of mtDNA variants introgressed onto a common nuclear background in cytoplasmic hybrid (cybrid) strains, we were able to quantify the among-line variance attributable to mitochondrial DNA, and we establish that mtDNA variation affects both activity and sleep, in a sex-specific manner. Altogether our study highlights the important role that mitochondrial genome variation plays on organismal physiology and behaviour.
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- 2022
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7. Liposomal Delivery of Newly Identified Prophage Lysins in a
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Diana, Morais, Luís, Tanoeiro, Andreia T, Marques, Tiago, Gonçalves, Aida, Duarte, António Pedro Alves, Matos, Joana S, Vital, Maria Eugénia Meirinhos, Cruz, Manuela Colla, Carvalheiro, Elsa, Anes, Jorge M B, Vítor, Maria Manuela, Gaspar, and Filipa F, Vale
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Prophages ,Gram-Negative Bacteria ,Liposomes ,Pseudomonas aeruginosa ,Animals ,Humans ,Peptidoglycan ,Gram-Positive Bacteria ,Anti-Bacterial Agents - Published
- 2022
8. Host genetics and pathogen species modulate infection-induced changes in social aggregation behaviour
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Valéria Romano, Amy Lussiana, Katy M. Monteith, Andrew J. J. MacIntosh, Pedro F. Vale, Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), and Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS)
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Male ,social aggregation ,bacterial infection ,Bacterial Infections ,infection avoidance ,Agricultural and Biological Sciences (miscellaneous) ,sickness behaviour ,Drosophila melanogaster ,[SDE]Environmental Sciences ,genetic variation ,pathogen dose ,Animals ,Drosophila ,Female ,Social Behavior ,General Agricultural and Biological Sciences - Abstract
Identifying how infection modifies host behaviours that determine social contact networks is important for understanding heterogeneity in infectious disease dynamics. Here, we investigate whether group social behaviour is modified during bacterial infection in fruit flies ( Drosophila melanogaster ) according to pathogen species, infectious dose, host genetic background and sex. In one experiment, we find that systemic infection with four different bacterial species results in a reduction in the mean pairwise distance within infected female flies, and that the extent of this change depends on pathogen species. However, susceptible flies did not show any evidence of avoidance in the presence of infected flies. In a separate experiment, we observed genetic- and sex-based variation in social aggregation within infected, same-sex groups, with infected female flies aggregating more closely than infected males. In general, our results confirm that bacterial infection induces changes in fruit fly behaviour across a range of pathogen species, but also highlight that these effects vary between fly genetic backgrounds and can be sex-specific. We discuss possible explanations for sex differences in social aggregation and their consequences for individual variation in pathogen transmission.
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- 2022
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9. Mitochondrial perturbations enhance cell-mediated innate immunity in Drosophila
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Laura Vesala, Yuliya Basikhina, Tea Tuomela, Pedro F. Vale, and Tiina S. Salminen
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Mitochondria participate in various cellular processes including energy metabolism, apoptosis, stress responses, inflammation and immunity. While mitochondrial dysfunction contributes to many diseases, mitochondrial perturbations can also be beneficial, a phenomenon coined mitohormesis. We investigated how mitochondrial variation contributes to the heterogeneity of infection outcomes and whether moderate mitochondrial dysfunction could benefit immune-challenged individuals. We took three approaches to model variation in mitochondrial oxidative phosphorylation (OXPHOS) in Drosophila melanogaster: i) inherited natural mitochondrial DNA (mtDNA) variation present in all tissues; ii) sporadic, tissue-specific silencing of OXPHOS-related genes and iii) systemic pharmacological inhibition of OXPHOS, and studied their effects on the cell-mediated innate immune response. When perturbing mitochondrial function, we detected signs of activated cellular innate immunity without infection and upon infection the perturbation caused enhanced immune response. Our data indicate that mitochondrial dysfunction can be beneficial in immune-challenged individuals when it is mild enough and does not cause complications to the host, and ultimately causes variation in infection outcomes between individuals.Author summaryMitochondria are eukaryotic cell organelles involved in various cellular processes including metabolism and cell signaling. The role of mitochondria and the variation of mitochondrial function in immune responses have been increasingly studied across various models. Mitochondrial dysfunction, originating from either the nuclear or the mitochondrial genome, is generally considered harmful for the organism. What is not yet well understood is how immune responses are affected by mitochondrial dysfunction, for example in the context of mitochondrial disease. Here, we show that in the fruit fly Drosophila melanogaster mild systemic or immune cell -specific mitochondrial perturbations enhance the innate immune response of the host to parasitoids. Furthermore, we show that due to the mitochondrial perturbations the cell-mediated immune system of the host is activated in the absence of infection and makes the immune responses more efficient upon infection. Importantly, our results demonstrate that mitochondrial genome variation is one of the underlying factors contributing to the variation in infection outcomes among individuals. Our results therefore contribute to the understanding of innate immunity, by providing information about the genetic causes underlying the variation seen in the response to infections.
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- 2022
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10. Testing evolutionary explanations for the lifespan benefit of dietary restriction in fruit flies ( Drosophila melanogaster )
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Katy M. Monteith, Eevi Savola, Clara Montgomery, Fergal M Waldron, Pedro F. Vale, and Craig A. Walling
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0106 biological sciences ,0301 basic medicine ,Calorie ,media_common.quotation_subject ,Longevity ,Zoology ,Biology ,Infections ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Stress, Physiological ,Pseudomonas ,Genetics ,medicine ,Animals ,bacteria ,Ecology, Evolution, Behavior and Systematics ,media_common ,Reproduction ,dietary restriction ,Original Articles ,Limiting ,Fecundity ,medicine.disease ,biology.organism_classification ,Biological Evolution ,infection ,Ageing ,Malnutrition ,Drosophila melanogaster ,030104 developmental biology ,ageing ,Wounds and Injuries ,Female ,Original Article ,diet ,General Agricultural and Biological Sciences ,Diet Therapy - Abstract
Dietary restriction (DR), limiting calories or specific nutrients without malnutrition, extends lifespan across diverse taxa. Traditionally, this lifespan extension has been explained as a result of diet-mediated changes in the trade-off between lifespan and reproduction, with survival favoured when resources are scarce. However, a recently proposed alternative suggests that the selective benefit of the response to DR is the maintenance of reproduction. This hypothesis predicts that lifespan extension is a side effect of benign laboratory conditions, and DR individuals would be frailer and unable to deal with additional stressors, and thus lifespan extension should disappear under more stressful conditions. We tested this by rearing outbred female fruit flies (Drosophila melanogaster) on 10 different protein:carbohydrate diets. Flies were either infected with a bacterial pathogen (Pseudomonas entomophila), injured with a sterile pinprick or unstressed. We monitored lifespan, fecundity and measures of ageing. DR extended lifespan and reduced reproduction irrespective of injury and infection. Infected flies on lower protein diets had particularly poor survival. Exposure to infection and injury did not substantially alter the relationship between diet and ageing patterns. These results do not provide support for lifespan extension under DR being a side effect of benign laboratory conditions. This article is protected by copyright. All rights reserved.
- Published
- 2021
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11. Ageing leads to nonspecific antimicrobial peptide responses in Drosophila melanogaster
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Biswajit Shit, Arun Prakash, Saubhik Sarkar, Pedro F. Vale, and Imroze Khan
- Abstract
Evolutionary theory predicts a late-life decline in the force of natural selection, possibly leading to late-life deregulations of the immune system. A potential outcome of such immune-deregulation is the inability to produce specific immunity against target pathogens. We tested this possibility by infecting multiple Drosophila melanogaster lines (with bacterial pathogens) across age-groups, where either individual or different combinations of Imd- and Toll-inducible antimicrobial peptides (AMPs) were deleted using CRISPR gene editing. We show a high degree of non-redundancy and pathogen-specificity of AMPs in young flies: in some cases, even a single AMP could confer complete resistance. In contrast, ageing led to a complete loss of such specificity, warranting the action of multiple AMPs across Imd- and Toll-pathways during infections. Moreover, use of diverse AMPs either had no survival benefits, or even accompanied survival costs post-infection. These features were also sexually dimorphic: females expressed a larger repertoire of AMPs than males, but extracted equivalent survival benefits. Finally, age-specific expansion of the AMP-pool was associated with downregulation of negative-regulators of the Imd-pathway and a potential damage to renal function, as features of poorly-regulated immunity, Overall, we could establish ageing as an important driver of nonspecific AMP responses, across sexes and bacterial infections.
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- 2022
- Full Text
- View/download PDF
12. The restriction factor pastrel is associated with host vigor, viral titer, and variation in disease tolerance during Drosophila C Virus infection
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Megan A.M. Kutzer, Vanika Gupta, Kyriaki Neophytou, Vincent Doublet, Katy M. Monteith, and Pedro F. Vale
- Abstract
Genetic variation for both resistance and disease tolerance has been described in a range of species infected with bacterial, viral and fungal pathogens. In Drosophila melanogaster, genetic variation in mortality following systemic Drosophila C Virus (DCV) infection has been shown to be driven by large effect polymorphisms in the viral restriction factor pastrel (pst). However, it is unclear if pst impacts variation in DCV titres (i.e. resistance), or if it also contributes to disease tolerance. We investigated systemic infection across a range of DCV challenge doses spanning nine orders of magnitude, in males and females of ten Drosophila Genetic Reference Panel (DGRP) lines carrying either a susceptible (S) or resistant (R) pst allele. Our results uncover among-line variation in fly survival, viral titers, and disease tolerance measured both as the ability to maintain survival (mortality tolerance) and reproduction (fecundity tolerance). We confirm the role of pst in resistance, as fly lines with the resistant (R) pst allele experienced lower viral titers, and we uncover novel effects of pst on host vigor, as flies carrying the R allele exhibited higher survival and fecundity even in the absence of infection. Finally, we found significant variation in the expression of the JAK-STAT ligand upd3 and the epigenetic regulator of JAK-STAT G9a. While G9a has been previously shown to mediate tolerance of DCV infection, we found no correlation between the expression of either upd3 or G9a on fly tolerance or resistance. Our work highlights the importance of both resistance and tolerance in viral defence.
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- 2022
- Full Text
- View/download PDF
13. Two novel sequence types of Helicobacter pylori strains: The first report from Turkey
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Mustafa Akar, İzzet Burçin Saticioğlu, Emre Karakaya, Tuba Kayman, Seçil Abay, Tevfik Solakoğlu, Filipa F. Vale, and Fuat Aydin
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Infectious Diseases ,Gastroenterology ,General Medicine - Published
- 2022
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14. Host and pathogen drivers of infection-induced changes in social aggregation behavior
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Valéria Romano, Amy Lussiana, Katy M. Monteith, Andrew J.J. MacIntosh, and Pedro F. Vale
- Abstract
Identifying how infection modifies host behaviours that determine social contact networks is important for understanding heterogeneity in infectious disease dynamics. Here, we investigate whether group social behaviour is modified during bacterial infection in Drosophila melanogaster, an established system for behavioural genetics, according to pathogen species, infectious dose, host genetic background and sex. We find that systemic infection with four different bacterial species results in a reduction in the mean pairwise distance within infected flies, and that the extent of this change depends on the infectious dose in a pathogen-specific way. In the presence of infected conspecifics, susceptible flies also tended to aggregate throughout time, but did not show any evidence of avoiding infected flies. We also observed genetic- and sex-based variation in social aggregation, with infected female flies aggregating more closely than infected males. In general, our results confirm that bacterial infection induces changes in fruit fly behaviour across a range of pathogen species, but also highlight that these effects vary between fly genetic backgrounds and can be sex-specific. We discuss possible explanations for sex differences in social aggregation and their consequences for individual variation in pathogen transmission.
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- 2022
- Full Text
- View/download PDF
15. Biomarker Characterization and Prediction of Virulence and Antibiotic Resistance from
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Joana S, Vital, Luís, Tanoeiro, Ricardo, Lopes-Oliveira, and Filipa F, Vale
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Helicobacter pylori ,Virulence ,Virulence Factors ,High-Throughput Nucleotide Sequencing ,Humans ,Drug Resistance, Microbial ,Biomarkers ,Helicobacter Infections - Abstract
The Gram-negative bacterium
- Published
- 2022
16. A 500-year tale of co-evolution, adaptation, and virulence: Helicobacter pylori in the Americas
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Mariana Catalano, Ricardo L. Dominguez, Filipa F. Vale, Santiago Sandoval-Motta, Evangelos Mourkas, Zilia Y. Muñoz-ramirez, C. Goldman, Teresa Alarcón, Matthew D. Hitchings, Martin J. Blaser, Gifone A. Rocha, Kaisa Thorell, Diana Ortiz-Princz, Alejandro Venegas, María Eugenia Cavazza, Douglas R. Morgan, Ben Pascoe, Alfonso Méndez-Tenorio, Gerardo Zerbeto De La Palma, Mónica Oleastro, Samuel K. Sheppard, Elvire Berthenet, Guillermo I. Perez-Perez, Javier Torres, Dulcienne M. M. Queiroz, Roberto C. Torres, Karen J. Goodman, and Repositório da Universidade de Lisboa
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Population genetics ,Allopatric speciation ,Virulence ,Microbiology ,Genome ,Article ,Helicobacter Infections ,purl.org/becyt/ford/3.3 [https] ,03 medical and health sciences ,Humans ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,0303 health sciences ,biology ,Helicobacter pylori ,030306 microbiology ,Genetic Variation ,biology.organism_classification ,United States ,Europe ,Fixation (population genetics) ,Evolutionary biology ,Homo sapiens ,purl.org/becyt/ford/3 [https] ,Host adaptation ,Adaptation ,Americas ,Microbial genetics ,Genome, Bacterial - Abstract
Helicobacter pylori is a common component of the human stomach microbiota, possibly dating back to the speciation of Homo sapiens. A history of pathogen evolution in allopatry has led to the development of genetically distinct H. pylori subpopulations, associated with different human populations, and more recent admixture among H. pylori subpopulations can provide information about human migrations. However, little is known about the degree to which some H. pylori genes are conserved in the face of admixture, potentially indicating host adaptation, or how virulence genes spread among different populations. We analyzed H. pylori genomes from 14 countries in the Americas, strains from the Iberian Peninsula, and public genomes from Europe, Africa, and Asia, to investigate how admixture varies across different regions and gene families. Whole-genome analyses of 723 H. pylori strains from around the world showed evidence of frequent admixture in the American strains with a complex mosaic of contributions from H. pylori populations originating in the Americas as well as other continents. Despite the complex admixture, distinctive genomic fingerprints were identified for each region, revealing novel American H. pylori subpopulations. A pan-genome Fst analysis showed that variation in virulence genes had the strongest fixation in America, compared with non-American populations, and that much of the variation constituted non-synonymous substitutions in functional domains. Network analyses suggest that these virulence genes have followed unique evolutionary paths in the American populations, spreading into different genetic backgrounds, potentially contributing to the high risk of gastric cancer in the region., This work was supported by “Consejo Nacional de Ciencia y Tecnología” (CONACYT; no. 576951) grant to ZYM-R, and by Magnus Bergvalls Foundation and Swedish Society for Medical Research (SSMF) to KT. SKS and BP are funded by the Medical Research Council (MR/L015080/1). Supported in part by the US National Cancer Institute National Cancer Institute to DRM (P01 CA028842, R01 CA190612, K07 CA125588, P30 CA068485). We are very grateful to Daniel Falush (Unit of Statistical Genetics of Bacteria, Institut Pasteur of Shanghai) for his critical input during the analysis of the presented data. We acknowledge the Aklavik H. pylori Project Planning Committee (Northwest Territories, Canada) for providing input on our presentation of this analysis.
- Published
- 2020
17. Intraoperative considerations in a patient with chondroblastic osteosarcoma and saddle pulmonary embolism undergoing amputation
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William B. Smisson, Arvind Chandrashekar, Bryan J Hierlmeier, and Henrique F. Vale
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medicine.medical_specialty ,medicine.medical_treatment ,saddle embolus ,lcsh:Medicine ,Case Report ,Case Reports ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Chondroblastic Osteosarcoma ,extracorporeal membrane oxygenation (ECMO) ,Medicine ,In patient ,transesophageal echo ,cardiovascular diseases ,Saddle ,lcsh:R5-920 ,business.industry ,lcsh:R ,General Medicine ,medicine.disease ,Surgery ,Pulmonary embolism ,Amputation ,030220 oncology & carcinogenesis ,cardiovascular system ,chondroblastic osteosarcoma ,lcsh:Medicine (General) ,Saddle embolus ,business ,Noncardiac surgery - Abstract
In patients presenting to the operating room with a saddle pulmonary embolism for noncardiac surgery, it is best to take a multidisciplinary approach and involve the cardiac and vascular surgeons.
- Published
- 2020
18. Cryptic Prophages Contribution for Campylobacter jejuni and Campylobacter coli Introgression
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Luís Tanoeiro, Mónica Oleastro, Alexandra Nunes, Andreia T. Marques, Sílvia Vaz Duarte, João Paulo Gomes, António Pedro Alves Matos, Jorge M. B. Vítor, Filipa F. Vale, and Repositório da Universidade de Lisboa
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Microbiology (medical) ,Infecções Gastrointestinais ,bacteriophage ,Introgression ,introgression ,Campylobacter ,host range ,Virology ,Host Range ,Bacteriophage ,Microbiology - Abstract
Campylobacter coli and C. jejuni, the causing agents of campylobacteriosis, are described to be undergoing introgression events, i.e., the transference of genetic material between different species, with some isolates sharing almost a quarter of its genome. The participation of phages in introgression events and consequent impact on host ecology and evolution remain elusive. Three distinct prophages, named C. jejuni integrated elements 1, 2, and 4 (CJIE1, CJIE2, and CJIE4), are described in C. jejuni. Here, we identified two unreported prophages, Campylobacter coli integrated elements 1 and 2 (CCIE1 and CCIE2 prophages), which are C. coli homologues of CJIE1 and CJIE2, respectively. No induction was achieved for both prophages. Conversely, induction assays on CJIE1 and CJIE2 point towards the inducibility of these prophages. CCIE2-, CJIE1-, and CJIE4-like prophages were identified in a Campylobacter spp. population of 840 genomes, and phylogenetic analysis revealed clustering in three major groups: CJIE1-CCIE1, CJIE2-CCIE2, and CJIE4, clearly segregating prophages from C. jejuni and C. coli, but not from human- and nonhuman-derived isolates, corroborating the flowing between animals and humans in the agricultural context. Punctual bacteriophage host-jumps were observed in the context of C. jejuni and C. coli, and although random chance cannot be fully discarded, these observations seem to implicate prophages in evolutionary introgression events that are modulating the hybridization of C. jejuni and C. coli species., F.F.V. is funded by Fundação para a Ciência e a Tecnologia (FCT) through an Assistant Researcher grant CEECIND/03023/2017, and a project grant (PTDC/BTM-SAL/28978/2017) that supported this work. The work is partially supported by National funds from FCT, projects UIDB/04138/2020 and UIDP/04138/2020. Campylobacter strains were sequenced under the GenomePT project (POCI-01-0145-FEDER-022184), supported by COMPETE 2020—Operational Programme for Competitiveness and Internationalization (POCI), Lisboa Portugal Regional Operational Programme (Lisboa2020), Algarve Portugal Regional Operational Programme (CRESC Algarve2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF), and by FCT. This work was also supported by Fundos FEDER through the Programa Operacional Factores de Competitividade—COMPETE and by Fundos Nacionais through the FCT within the scope of the project UID/BIM/00009/2019 (Centre for Toxicogenomics and Human Health-ToxOmics).
- Published
- 2022
19. Cryptic Prophages Contribution for
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Luís, Tanoeiro, Mónica, Oleastro, Alexandra, Nunes, Andreia T, Marques, Sílvia Vaz, Duarte, João Paulo, Gomes, António Pedro Alves, Matos, Jorge M B, Vítor, and Filipa F, Vale
- Published
- 2022
20. Editorial: The Role of Mobile Genetic Elements in Bacterial Evolution and Their Adaptability
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Filipa F. Vale, Philippe Lehours, Yoshio Yamaoka, and Repositório da Universidade de Lisboa
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Microbiology (medical) ,restriction and modification ,bacteriophage ,insertion sequence (Is) ,evolution ,adaptability ,virulence factors ,mobile elements (MEs) ,Microbiology - Published
- 2022
21. 16S Genomics for Diagnosing Invasive Bacterial Infection
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Filipa F. Vale, Luís Tanoeiro, and Andreia T. Marques
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Genomics ,Computational biology ,Biology - Published
- 2022
- Full Text
- View/download PDF
22. Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations
- Author
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Harry A. Thorpe, Elise Tourrette, Koji Yahara, Filipa F. Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Yoshio Yamaoka, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios N. Sgouras, Wael Elamin, Ben Pascoe, Samuel K. Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, and Daniel Falush
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Multidisciplinary ,Helicobacter pylori ,General Physics and Astronomy ,Black People ,General Chemistry ,Microbiology ,General Biochemistry, Genetics and Molecular Biology ,Helicobacter Infections ,Infecções Gastrointestinais ,Africa ,Mutation ,Genetics ,Humans - Abstract
Erratum in: Nat Commun. 2023 Mar 20;14(1):1539. doi: 10.1038/s41467-023-37302-5. Helicobacter pylori lives in the human stomach and has a population structure resembling that of its host. However, H. pylori fromEurope and the Middle East trace substantially more ancestry from modern African populations than the humans that carry them. Here, we use a collection of Afro-Eurasian H. pylori genomes to show that this African ancestry is due to at least three distinct admixture events. H. pylori from East Asia, which have undergone little admixture, have accumulated many more non-synonymous mutations than African strains. European and Middle Eastern bacteria have elevated African ancestry at the sites of these mutations, implying selection to remove them during admixture. Simulations show that population fitness can be restored after bottlenecks bymigration and subsequent admixture of small numbers of bacteria from non-bottlenecked populations. We conclude that recent spread of African DNA has been driven by deleterious mutations accumulated during the original out-of-Africa bottleneck. This work was supported by Sequencing Grants-in-aid for Scientific Research from the Ministry of Education, Culture, Sports, Science, and Technology (MEXT) of Japan (221S0002, 18KK0266, 19H03473, 21H00346 and 22H02871) to Y.Y. F.F.V. is financed by FCT through Assistant Researcher grant CEECIND/03023/2017 and a project grant PTDC/BTM-TEC/3238/ 2020. I.K. studentship was funded by the National Strategic Reference Framework Operational Program “Competitiveness, Entrepreneurship and Innovation” (NSRF 2014-2020, project No. MIS5002486) and sequencing of strains was supported by the InfeNeutra Project (NSRF 2007-2013, project no. MIS450598) of the Ministry of Culture and Edu- cation, Greece. K.T. and the sequencing of KI isolates was supported by Erik Philip-Sörensen Foundation grant G2016-08, and Swedish Society for Medical research (SSMF). All primary bioinformatics and parts of the comparative genomics were performed on resources provided by Swedish National Infrastructure for Computing (SNIC) through Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) under projects snic2018-8-24 and uppstore2017270. Work by S.S. was supported by the German Research Foundation (DFG, project number 158 989 968–SFB 900/A1) and by the Bavarian Ministry of Sci- ence and the Arts in the framework of the Bavarian Research Network “New Strategies Against Multi-Resistant Pathogens by Means of Digital Networking—bayresq.net”. D.F. was supported by Shanghai Municipal Science and Technology Major Project No. 2019SHZDZX02. info:eu-repo/semantics/publishedVersion
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- 2022
23. A importância da educação para análise do contexto pandêmico
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M. L. VENUTO, R. F. VALE, and R. A. R. SILVA
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- 2021
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24. Mitonuclear interactions affect locomotor activity and sleep in Drosophila melanogaster
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Tiina Salminen, M. Florencia Camus, Katy M. Monteith, Lucy Anderson, and Pedro F. Vale
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Genetics ,Mitochondrial DNA ,biology ,Mitochondrion ,Drosophila melanogaster ,biology.organism_classification ,Drosophila ,Genome ,Sleep in non-human animals ,Cytoplasmic hybrid ,Gene - Abstract
Mitochondria are organelles that produce cellular energy in the form of ATP through oxidative phosphorylation, and this primary function is conserved between many taxa. Locomotion is a trait that is highly reliant on metabolic function and expected to be greatly affected by disruptions to mitochondrial performance. To this end, we aimed to examine how activity and sleep vary between Drosophila melanogaster strains with different geographic origins, how these patterns are affected by mitochondrial DNA (mtDNA) variation, and how breaking up co-evolved mito-nuclear gene combinations affect the studied activity traits. The results demonstrate that Drosophila strains from different locations differ in sleep and activity, and the extent of variation differs between sexes, females in general being more active. By comparing activity and sleep of mtDNA variants introgressed onto a common nuclear background in cytoplasmic hybrid (cybrid) strains, we establish that mtDNA variation affects both traits, sex specifically. Furthermore, by using previously published mtDNA copy number data, we detected a positive correlation between mtDNA copy number and the activity levels of the cybrid flies. Altogether, our study shows that both mtDNA variation and mitonuclear interactions affect activity and sleep patterns, highlighting the important role that both genomes play on life-history trait evolution.
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- 2021
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25. Mechanisms of damage prevention, signalling, and repair impact disease tolerance
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Katy M. Monteith, Arun Prakash, and Pedro F. Vale
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Male ,General Immunology and Microbiology ,Bacteria ,biology ,General Medicine ,biology.organism_classification ,Phenotype ,General Biochemistry, Genetics and Molecular Biology ,Microbiology ,ErbB Receptors ,Drosophila melanogaster ,Catalase ,Immunity ,biology.protein ,Animals ,Drosophila Proteins ,Drosophila ,Female ,Peritrophic matrix ,General Agricultural and Biological Sciences ,Pathogen ,Pseudomonas entomophila ,Loss function ,General Environmental Science - Abstract
The insect gut is frequently exposed to pathogenic threats and must not only clear these potential infections, but also tolerate relatively high microbe loads. In contrast to the mechanisms that eliminate pathogens, we currently know less about the mechanisms of disease tolerance. We investigated how well-described mechanisms that prevent, signal, control or repair damage during infection contribute to the phenotype of disease tolerance. We established enteric infections with the bacterial pathogen Pseudomonas entomophila in transgenic lines of Drosophila melanogaster fruit flies affecting dcy (a major component of the peritrophic matrix), upd3 (a cytokine-like molecule), irc (a negative regulator of reactive oxygen species) and egfr 1 (epithelial growth factor receptor). Flies lacking dcy experienced the highest mortality, while loss of function of either irc or upd3 reduced tolerance in both sexes. The disruption of egfr 1 resulted in a severe loss in tolerance in male flies but had no substantial effect on the ability of female flies to tolerate P. entomophila infection, despite carrying greater microbe loads than males. Together, our findings provide evidence for the role of damage limitation mechanisms in disease tolerance and highlight how sexual dimorphism in these mechanisms could generate sex differences in infection outcomes.
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- 2021
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26. Comparison of Parameters from a New MSCR Approach with Classical MSCR and LAS Parameters for Simplified Binder Selection
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Aline C. F. Vale, Lucas S. V. da Silva, Juceline B. S. Bastos, Lucas F. A. L. Babadopulos, Jorge B. Soares, and Hassan Baaj
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science - Published
- 2022
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27. Larval diet affects adult reproduction, but not survival, independent of the effect of injury and infection in Drosophila melanogaster
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Eevi, Savola, Pedro F, Vale, and Craig A, Walling
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larval diet ,injury ,Physiology ,Reproduction ,Carbohydrates ,drosophila melanogaster ,infection ,Diet ,life history trade offs ,Drosophila melanogaster ,Larva ,Insect Science ,Animals ,Female - Abstract
Early-life conditions have profound effects on many life-history traits, where early-life diet affects both juvenile development, and adult survival and reproduction. Early-life diet also has consequences for the ability of adults to withstand environmental challenges such as starvation, temperature and desiccation. However, it is less well known how early-life diet influences the consequences of infection in adults. Here we test whether varying the larval diet of female Drosophila melanogaster (through altering protein to carbohydrate ratio, P:C) influences the long-term consequences of injury and infection with the bacterial pathogen Pseudomonas entomophila. Given previous work manipulating adult dietary P:C, we predicted that adults from larvae raised on higher P:C diets would have increased reproduction, but shorter lifespans and an increased rate of ageing, and that the lowest larval P:C diets would be particularly detrimental for adult survival in infected individuals. For larval development, we predicted that low P:C would lead to a longer development time and lower viability. We found that early-life and lifetime egg production were highest at intermediate to high larval P:C diets, but this was independent of injury and infection. There was no effect of larval P:C on adult survival. Larval development was quickest on intermediate P:C and egg-to-pupae and egg-to-adult viability were slightly higher on higher P:C. Overall, despite larval P:C affecting several measured traits, we saw no evidence that larval P:C altered the consequence of infection or injury for adult survival or early-life and lifetime reproduction. Taken together, these data suggest that larval diets appear to have a limited impact on the adult life history consequences of infection.
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- 2022
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28. DuoxandJak/Statsignalling influence disease tolerance in Drosophila duringPseudomonas entomophilainfection
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Katy M. Monteith, Mickael Bonnet, Pedro F. Vale, and Arun Prakash
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Innate immune system ,Mutant ,Immunology ,Wild type ,JAK-STAT signaling pathway ,Biology ,Drosophila melanogaster ,biology.organism_classification ,Pathogen ,Phenotype ,stat - Abstract
Disease tolerance describes a hosts ability to maintain health independently of the ability to clear microbe loads. However, we currently know little about the mechanisms that underlie disease tolerance or how known mechanisms of tissue damage signalling and repair may contribute to variation in tolerance. The Jak/Stat pathway plays a pivotal role in Drosophila humoral innate immunity, signalling tissue damage and triggering cellular renewal, making it a potential mechanism underlying the disease tolerance phenotype. Here, we show that disrupting the Jak/Stat pathway in Drosophila melanogaster alters disease tolerance during Pseudomonas entomophila systemic infection. Overall, flies with disrupted Jak/Stat show variation in survival that is not explained by variation in pathogen loads. For instance, mutations disrupting the function of ROS producing dual oxidase (duox) or the negative regulator of Jak/Stat, Socs36E render males less tolerant to systemic bacterial infection but not females. We also investigated whether the negative regulator of Jak/Stat, G9a which has previously been associated with tolerance of viral infections is also implicated in tolerance of bacterial infection. While female flies lacking G9a showed higher mortality and reduced bacterial clearance, disease tolerance did not differ between G9a mutants and the wildtype. This suggests that G9a does not affect tolerance during systemic bacterial infection as it appears to do with viral infection. Overall, our findings highlight that Jak/Stat signalling mediates disease tolerance during systemic bacterial infection and that this response differs between males and females. Our work therefore suggests that differences in Jak/Stat mediated disease tolerance may be a potential source of sexually dimorphic response to infection in Drosophila.
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- 2021
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29. Negative immune regulation contributes to disease tolerance in Drosophila
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Pedro F. Vale, Arun Prakash, and Katy M. Monteith
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Immune system ,Immunopathology ,Antimicrobial peptides ,Immunology ,Biology ,Plant disease resistance ,Drosophila melanogaster ,biology.organism_classification ,Pathogen ,Phenotype ,Pseudomonas entomophila - Abstract
Disease tolerance is an infection phenotype where hosts show relatively high health despite harbouring elevated pathogen loads. Compared to the mechanisms of immune clearance our knowledge of the mechanisms underlying increased tolerance remains incomplete. Variation in the ability to reduce immunopathology may explain why some hosts can tolerate higher pathogen burdens with reduced pathology. Negative immune regulation would therefore appear to be a clear candidate for a mechanism underlying disease tolerance but this has not been tested directly for bacterial infections. Here, we examined how the negative regulation of the immune deficiency (IMD) pathway affects disease tolerance in Drosophila melanogaster when infected with the gram-negative bacterial pathogen Pseudomonas entomophila. We find that UASRNAi-mediated reduced expression of the negative regulators of IMD (pirk and caudal) severely reduced the ability to tolerate infection in both males and females across a wide range of infectious doses. While flies unable to regulate the IMD response exhibited higher expression of antimicrobial peptides and lower bacterial loads as expected, this was not accompanied by a proportional reduction in mortality. Instead, tolerance (measured as fly survival relative to its microbe load) was drastically reduced, likely due to the combination of increased immunopathology and cytotoxicity of elevated AMP expression. Our results therefore highlight that in addition to regulating an efficient pathogen clearance response, negative regulators of IMD also contribute to disease tolerance.
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- 2021
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30. Acute and Chronic Effects of Interval Training on the Immune System: A Systematic Review with Meta-Analysis
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Arthur F. Vale, Daniel Souza, Wagner Rodrigues Martins, Paulo Gentil, Anderson Garcia Silva, Murilo Augusto Soares de Araújo, Claudio Andre Barbosa de Lira, Rodrigo Ramirez-Campillo, and Célio Antônio de Paula Júnior
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Immunoglobulin A ,medicine.medical_specialty ,leukocytes ,QH301-705.5 ,Lymphocyte ,infectious disease ,MEDLINE ,physical activity ,Review ,immunoglobulin A ,General Biochemistry, Genetics and Molecular Biology ,Interval training ,law.invention ,Immune system ,Randomized controlled trial ,law ,Internal medicine ,medicine ,Biology (General) ,high-intensity interval exercise ,immunologic monitoring ,General Immunology and Microbiology ,biology ,immunity ,Clinical trial ,aerobic capacity ,medicine.anatomical_structure ,Meta-analysis ,biology.protein ,General Agricultural and Biological Sciences - Abstract
Simple Summary Interval training (IT) is a popular training strategy recognized by its positive effects on metabolic and cardiovascular system. However, there seems no consensus regarding the effects of IT on immune system parameters. Therefore, we aimed to summarize the evidence regarding the effects of IT on the immune system. As our many findings, an IT acutely promote a transitory change on immune cell count followed by reduced function. The magnitude of these changes seems to vary in accordance with IT type. On the other hand, the regular practice of IT might contribute to improve immune function without apparent change on immune cell count. Abstract Purpose: To summarize the evidence regarding the acute and chronic effects of interval training (IT) in the immune system through a systematic review with meta-analysis. Design: Systematic review with meta-analysis. Data source: English, Portuguese and Spanish languages search of the electronic databases Pubmed/Medline, Scopus, and SciELO. Eligibility criteria: Studies such as clinical trials, randomized cross-over trials and randomized clinical trials, investigating the acute and chronic effects of IT on the immune outcomes in humans. Results: Of the 175 studies retrieved, 35 were included in the qualitative analysis and 18 in a meta-analysis. Within-group analysis detected significant acute decrease after IT on immunoglobulin A (IgA) secretory rate (n = 115; MD = −15.46 µg·min−1; 95%CI, −28.3 to 2.66; p = 0.02), total leucocyte count increase (n = 137; MD = 2.58 × 103 µL−1; 95%CI, 1.79 to 3.38; p < 0.001), increase in lymphocyte count immediately after exercise (n = 125; MD = 1.3 × 103 µL−1; 95%CI, 0.86 to 1.75; p < 0.001), and decrease during recovery (30 to 180 min post-exercise) (n = 125; MD = −0.36 × 103 µL−1;−0.57 to −0.15; p < 0.001). No effect was detected on absolute IgA (n = 127; MD = 47.5 µg·mL−1; 95%CI, −10.6 to 105.6; p = 0.11). Overall, IT might acutely reduce leucocyte function. Regarding chronic effects IT improved immune function without change leucocyte count. Conclusion: IT might provide a transient disturbance on the immune system, followed by reduced immune function. However, regular IT performance induces favorable adaptations on immune function.
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- 2021
31. Glutaredoxin: Discovery, redox defense and much more
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Filipa F. Vale, Lucia Coppo, Vasco Branco, Fernando T. Ogata, and Repositório da Universidade de Lisboa
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0301 basic medicine ,Gene isoform ,Medicine (General) ,QH301-705.5 ,Clinical Biochemistry ,Glutathione reductase ,Glutaredoxin ,Grxs phylogenetics ,Biochemistry ,Redox ,Catalysis ,03 medical and health sciences ,chemistry.chemical_compound ,R5-920 ,0302 clinical medicine ,Iron homeostasis ,medicine ,Humans ,Biology (General) ,Glutaredoxins ,Phylogeny ,Glutathionylation ,biology ,Organic Chemistry ,Neurodegeneration ,Glutathione ,medicine.disease ,biology.organism_classification ,030104 developmental biology ,Ribonucleotide reductase ,chemistry ,Redox regulation ,Deglutathionylation ,Oxidation-Reduction ,030217 neurology & neurosurgery ,Bacteria - Abstract
Glutaredoxin, Grx, is a small protein containing an active site cysteine pair and was discovered in 1976 by Arne Holmgren. The Grx system, comprised of Grx, glutathione, glutathione reductase, and NADPH, was first described as an electron donor for Ribonucleotide Reductase but, from the first discovery in E.coli, the Grx family has impressively grown, particularly in the last two decades. Several isoforms have been described in different organisms (from bacteria to humans) and with different functions. The unique characteristic of Grxs is their ability to catalyse glutathione-dependent redox regulation via glutathionylation, the conjugation of glutathione to a substrate, and its reverse reaction, deglutathionylation. Grxs have also recently been enrolled in iron sulphur cluster formation. These functions have been implied in various physiological and pathological conditions, from immune defense to neurodegeneration and cancer development thus making Grx a possible drug target. This review aims to give an overview on Grxs, starting by a phylogenetic analysis of vertebrate Grxs, followed by an analysis of the mechanisms of action, the specific characteristics of the different human isoforms and a discussion on aspects related to human physiology and diseases., LC, FTO and VB would like to dedicate this work to the memory of Professor Arne Holmgren, discoverer of glutaredoxin, a reference in redox research, a great mentor and storyteller. It was a privilege to work and learn from him. The authors want to thank also all the excellent scientists with whom Arne worked for their contribution to increases the knowledge about glutaredoxins. The authors thank Dr Colin Miller for proofreading the manuscript. LC was supported by the Swedish Cancer Society (961), the Swedish Research Council Medicine (13X-3529) and a grant from the Swedish Fulbright Commission (2020). VB and FFV are supported by iMed.ULisboa’s strategic project (UIDP/04138/2020; UIDB/04138/2020), financed by national funds from Fundação para a Ciência e Tecnologia, Portugal (FCT; www.fct.pt). VB is financed by national funds via Fundação para a Ciência e Tecnologia through Norma Transitória - DL57/2016/CP1376/CT002. FFV is financed by Fundação para a Ciência e Tecnologia through Assistant Researcher grant CEECIND/03023/2017.
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- 2021
32. Severe acute myocarditis due to scorpion envenoming: unusual presentation in adults
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Marcos Danillo Peixoto Oliveira, Glenda Alves de Sá, and Cássia Souza F Vale
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Pediatrics ,medicine.medical_specialty ,Acute myocarditis ,biology ,business.industry ,Internal medicine ,biology.animal ,medicine ,Cardiology ,Scorpion ,Presentation (obstetrics) ,business - Published
- 2020
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33. Edaphic Factors and Flooding Periodicity Determining Forest Types in a Topographic Gradient in the Northern Brazilian Amazonia
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I. Montero Fernandez, L. A. Beltrán Alemán, N. E. Arriaga Pérez, Lidiany Camila da Silva Carvalho, S. A. Saravia Maldonado, Reinaldo Imbrozio Barbosa, R. L. C. Oliveira, J. F. Vale, and Paulo Eduardo Barni
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Hydrology ,Serra da Mocidade ,Topographic gradient ,Amazon rainforest ,Flooding (psychology) ,Environmental science ,Edaphic ,General Medicine ,Florestas Oligotróficas ,Ecótono - Abstract
The Brazilian Amazonia is a region covered by an extensive mosaic of tropical forests conditioned by different topographical and hydro-edaphic features. Although studies relating environmental determinants of structure and floristic composition are systematically evolving in the region, there is no doubt that there are still information gaps due to the lack of research in peripheric areas of the Amazonia. The seasonally flooded areas of the state of Roraima situated on rio Branco-rio Negro basin, northern Brazilian Amazonia, still are deprived of such information. In this way, this work had as objective determine the physical and soil chemical attributes, and the flooding periodicity that characterize different forest types dispersed in a topographic gradient located in an area on the north of rio Branco-rio Negro basin. Soil samples (0-60 cm) were collected along a 2.7 km transect (31.1-64.8 m a.s.l.) crossing three different forest types: (i) mosaic between treed and forested shade-loving (La+Ld), (ii) area of ecological tension between forested shade-loving and open ombrophilous forest (LO) and (iii) open ombrophilous forest (Ab+As). The results indicated different soil classes and flooding periodicity for each forest type observed: Entisols Fluvents (La+Ld, 3-4 months flooded), Entisols Quartzipsamments (LO, 1-2 months) and Yellow Ultisols (Ab+As, no flooding). All analyzed soils were defined as nutrient-poor areas, especially those located on low altitude, characterized for higher hydrological restrictions (seasonal flooding) aggregating forest types of lower structural patterns (e.g. La+Ld). Soils on low altitude were also characterized as those with the highest percentage of fine sand and silt, while soil free of seasonal flooding (Yellow Ultisols) presented the highest levels of clay and coarse sand, always associated with the ombrophilous forests (higher structural patterns). These results improve our understanding of the environmental factors conditioning different forest types in this peripheral region of Amazonia, suggesting that ecosystems with higher hydro-edaphic restrictions are a strong indicator of forest types with lower structural patterns.
- Published
- 2019
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34. Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations
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Saeid Latifi-Navid, Lars Agréus, Daniel Falush, Kaisa Thorell, Yoshio Yamaoka, Harry A. Thorpe, Beatriz Martinez-Gonzalez, Mónica Oleastro, Lars Engstrand, Timokratis Karamitros, Jukka Ronkainen, Filipa F. Vale, Sebastian Suerbaum, Koji Yahara, TsachiTsadok Perets, Elise Tourrette, Pertti Aro, Ben Pascoe, Wael El-Amin, Ioannis Karayiannis, Samuel K. Sheppard, Siqi Liu, Dionyssios N. Sgouras, and Teresa Alarcón
- Subjects
Genetics ,education.field_of_study ,Mutation rate ,Population bottleneck ,biology ,Out of africa ,Population ,Helicobacter pylori ,education ,Homologous recombination ,biology.organism_classification ,Genome ,Bottleneck - Abstract
All genomes mutate but the consequences of the resulting deleterious mutational load are poorly understood. Helicobacter pylori lives in the human stomach, has a higher mutation rate than most bacteria and has accompanied anatomically modern humans in migrations including the out-of-Africa expansion more than 50,000 years ago. H. pylori from East Asia have accumulated at least 500 more non-synonymous mutations than African strains, which we propose is due to reduced efficacy of selection during the out-of-Africa bottleneck. H. pylori from Europe and the Middle East trace a substantially higher fraction of ancestry from modern African populations than the humans that carry them, which we find is due to at least three separate admixture events. African ancestry is elevated at positions in the genome where non-synonymous mutations are at high frequency in Asia. We propose that this is due to replacement of deleterious mutations that accumulated during the bottleneck, with the high overall African ancestry proportion due to clonal expansion of strains of African origin. We use simulations to show that a Muller9s ratchet like effect can lead to long-term segregation of deleterious mutations within bacterial populations after a bottleneck, despite high rates of homologous recombination, but that population fitness can be restored by migration of small numbers of bacteria from non-bottlenecked populations. Our results demonstrate that population bottlenecks can have long-term genomic and demographic consequences, even in species with enormous population sizes.
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- 2021
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35. Emergent cardiopulmonary bypass during cesarean delivery. A case report
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Arthur L. Calimaran, Chawla L. Mason, Daniel Castillo, James G. Rabalais, Jenna K. Lane, and Henrique F. Vale
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Aortic valve ,medicine.medical_specialty ,Medicine (General) ,Case Report ,transesophageal echocardiogram ,Regurgitation (circulation) ,Case Reports ,030204 cardiovascular system & hematology ,Transesophageal echocardiogram ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,R5-920 ,law ,cesarean delivery ,medicine ,Cardiopulmonary bypass ,Cesarean delivery ,Pregnancy ,medicine.diagnostic_test ,business.industry ,infective endocarditis ,food and beverages ,General Medicine ,medicine.disease ,aortic valve ,Surgery ,medicine.anatomical_structure ,surgical procedures, operative ,030220 oncology & carcinogenesis ,Infective endocarditis ,Medicine ,business ,cardiopulmonary bypass - Abstract
Successful management of Cesarean Delivery complicated by emergent CPB and AVR requires meticulous multidisciplinary planning. This case also represents the volatility that can arise from severe aortic regurgitation during pregnancy.
- Published
- 2021
36. Draft Genome Sequences of 29 Helicobacter pylori Strains Isolated from Colombia
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Juan Sebastián Solano-Gutiérrez, Angela B Muñoz, Filipa F. Vale, Alba A. Trespalacios-Rangel, Johanna Stepanian, Carmen Acosta, and Repositório da Universidade de Lisboa
- Subjects
0301 basic medicine ,Genetics ,biology ,Genome Sequences ,Chronic gastritis ,social sciences ,Helicobacter pylori ,biology.organism_classification ,medicine.disease ,Genome ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Immunology and Microbiology (miscellaneous) ,parasitic diseases ,medicine ,population characteristics ,030211 gastroenterology & hepatology ,Molecular Biology ,Genetic composition ,geographic locations - Abstract
Here, we present the draft genome sequences of 29 Colombian Helicobacter pylori strains. These strains were isolated in Bogotá, Colombia, from patients diagnosed with chronic gastritis. The genomic characterization of these strains will provide more information on the genetic composition of H. pylori strains from Colombia., We thank the entities that financially supported the development of this work. A.B.M. is a recipient of a scholarship from the Centro de Estudios Interdisciplinarios Básicos y Aplicados (CEIBA) Foundation, Colombia; and A.B.M., C.A., J.S., and A.A.T.-R. are recipients of a project grant (120380763025/2018) from MinCiencias, Colombia. The work is partially supported by Research Vice-Rectory, Pontificia Universidad Javeriana (PPTA_7676) and F.P.I.T. BanRepCultural (project 3956). F.F.V. is financed by national funds from the Fundação para a Ciência e a Tecnologia (FCT) through an assistant researcher grant (CEECIND/03023/2017), a project grant (PTDC/BTM-SAL/28978/2017), and projects UIDB/04138/2020 and UIDP/04138/2020; these funds partially supported this work. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
- Published
- 2021
37. Carry on caring:Infected females maintain their parental care despite high mortality
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Tom Ratz, Katy M. Monteith, Per T. Smiseth, and Pedro F. Vale
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0106 biological sciences ,0303 health sciences ,High mortality ,parental care ,anti-microbial peptide expression ,Biology ,010603 evolutionary biology ,01 natural sciences ,immunity ,03 medical and health sciences ,Carry (investment) ,Animal Science and Zoology ,nicrophorus vespilloides ,reproductive investment ,Paternal care ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Demography - Abstract
Parental care is a key component of an organism’s reproductive strategy that is thought to trade-off with allocation toward immunity. Yet, it is unclear how caring parents respond to pathogens: do infected parents reduce care as a sickness behavior or simply from being ill or do they prioritize their offspring by maintaining high levels of care? To address this issue, we investigated the consequences of infection by the pathogen Serratia marcescens on mortality, time spent providing care, reproductive output, and expression of immune genes of female parents in the burying beetle Nicrophorus vespilloides. We compared untreated control females with infected females that were inoculated with live bacteria, immune-challenged females that were inoculated with heat-killed bacteria, and injured females that were injected with buffer. We found that infected and immune-challenged females changed their immune gene expression and that infected females suffered increased mortality. Nevertheless, infected and immune-challenged females maintained their normal level of care and reproductive output. There was thus no evidence that infection led to either a decrease or an increase in parental care or reproductive output. Our results show that parental care, which is generally highly flexible, can remain remarkably robust and consistent despite the elevated mortality caused by infection by pathogens. Overall, these findings suggest that infected females maintain a high level of parental care, a strategy that may ensure that offspring receive the necessary amount of care but that might be detrimental to the parents’ own survival or that may even facilitate disease transmission to offspring.
- Published
- 2021
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38. Epidemiological dynamics of viral infection in a marine picoeukaryote
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Schaum E, Sinéad Collins, Pedro F. Vale, Sarah E. Heath, and Luisa Listmann
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Genetics ,education.field_of_study ,biology ,Resistance (ecology) ,Host (biology) ,Population ,Eukaryote ,biology.organism_classification ,education ,Pathogen ,Viral infection ,Serial transfer ,Ostreococcus tauri - Abstract
Ostreococcus tauri is a ubiquitous marine pico-eukaryote that is susceptible to lysis upon infection by its species specific Ostreococcus tauri viruses (OtVs). In natural populations of O. tauri, costs of resistance are usually invoked to explain the persistence or reappearance of susceptible individuals in resistant populations. Given the low costs of resistance measured in laboratory experiments with the O. tauri/OtV system to date, the question remains of why susceptible individuals persist in the wild at all. Epidemiological models of host and pathogen population dynamics are one useful approach to understand the conditions that can allow the coexistence of susceptible and resistant hosts. We used a SIR (Susceptible-Infected-Resistant) model to investigate epidemiological dynamics under different laboratory culturing regimes that are commonly used in the O.tauri/OtV system. When taking into account serial transfer (i.e. batchcycle lengths) and dilution rates as well as different resistance costs, our model predicts that no susceptible cells should be detected under any of the simulated conditions – this is consistent with laboratory findings. We thus considered an alternative model that is not used in laboratory experiments, but which incorporates one key process in natural populations: host populations are periodically re-seeded with new infective viruses. In this model, susceptible individuals re-occurred in the population, despite low costs of resistance. This suggests that periodic attack by new viruses, rather than (or in addition to) costs of resistance, may explain the high proportion of susceptible hosts in natural populations, and underlie the discrepancy between laboratory studies and observations of fresh isolates.ImportanceIn natural samples of Ostreococcus sp. and its associated viruses, susceptible hosts are common. However, in laboratory experiments, fully resistant host populations readily and irreversibly evolve. Laboratory experiments are powerful methods for studying process because they offer a stripped-down simplification of a complex system, but this simplification may be an oversimplification for some questions. For example, laboratory and field systems of marine microbes and their viruses differ in population sizes and dynamics, mixing or migration rates, and species diversity, all of which can dramatically alter process outcomes. We demonstrate the utility of using epidemiological models to explore experimental design and to understand mechanisms underlying host-virus population dynamics. We highlight that such models can be used to form strong, testable hypotheses about which key elements of natural systems need to be included in laboratory systems to make them simplified, rather than oversimplified, versions of the processes we use them to study.
- Published
- 2021
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39. An American lineage ofHelicobacter pyloriprophages found in Colombia
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Alba A. Trespalacios-Rangel, Angela B Muñoz, and Filipa F. Vale
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Prophages ,Population ,Colombia ,Biology ,Genome ,Helicobacter Infections ,03 medical and health sciences ,0302 clinical medicine ,Phylogenetics ,Humans ,Typing ,education ,Allele frequency ,Phylogeny ,Prophage ,Genetics ,education.field_of_study ,Helicobacter pylori ,Phylogenetic tree ,Gastroenterology ,General Medicine ,bacterial infections and mycoses ,United States ,Infectious Diseases ,030220 oncology & carcinogenesis ,Multilocus sequence typing ,030211 gastroenterology & hepatology ,Genome, Bacterial ,Multilocus Sequence Typing - Abstract
Background Helicobacter pylori is a human gastric carcinogen that is highly prevalent in Latin American. The prophages of H. pylori show a structured population and contribute to the diversity of this bacterium. However, H. pylori prophages present in American strains have not been described to date. In this study, we identified, characterized, and present the phylogenetic analysis of the prophages present in Colombian H. pylori strains. Methods To characterize Colombian H. pylori strains and their prophages, a Multilocus Sequences Typing (MLST) and a Prophage Sequences Typing (PST), using the integrase and holin genes, were performed. Furthermore, five Colombian H. pylori had their full genome sequenced, and six Colombian H.pylori retrieved from databases, allowing to determine the prophage complete genome and insertion site. Results The integrase gene frequency was 12.6% (27/213), while both integrase and holin genes were present in 4.2% (9/213) of the samples analyzed. The PST analysis showed that Colombian prophages belong to different populations, including hpSWEurope, hpNEurope, hpAfrica1, and a new population, named hpColombia. The MLST analysis classified most of the Colombia strains in the hpEurope population. Conclusions The new H. pylori prophage population revealed that Colombian prophages follow a unique evolutionary trajectory, contributing to bacterial diversity. The global H. pylori prophage phylogeny highlighted five phylogenetic groups, one more than previously reported. After the arrival of Europeans, the Colombian H. pylori bacteria and their prophages formed an independent evolutionary line to adapt to the new environment and new human hosts.
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- 2021
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40. Dissecting genetic and sex-specific sources of host heterogeneity in pathogen shedding and spread
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Jonathon A. Siva-Jothy and Pedro F. Vale
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0106 biological sciences ,Male ,Heredity ,Physiology ,Pathology and Laboratory Medicine ,01 natural sciences ,Reproductive Physiology ,Copulation ,Medicine and Health Sciences ,Mating ,Biology (General) ,Pathogen ,media_common ,0303 health sciences ,biology ,Transmission (medicine) ,individual variation ,viral transmission ,Microbial Genetics ,Longevity ,Eukaryota ,Animal Models ,Viral Load ,drosophila C virus ,Virus Shedding ,Insects ,Drosophila melanogaster ,Experimental Organism Systems ,Host-Pathogen Interactions ,Drosophila ,Female ,Genetic Load ,Pathogens ,Viral load ,Research Article ,Arthropoda ,QH301-705.5 ,media_common.quotation_subject ,Immunology ,Insect Viruses ,Research and Analysis Methods ,010603 evolutionary biology ,Microbiology ,drosophila melanogaster ,03 medical and health sciences ,Model Organisms ,Sex Factors ,Virology ,Genetics ,Animals ,Viral shedding ,Molecular Biology ,030304 developmental biology ,Evolutionary Biology ,R0 ,Population Biology ,Host (biology) ,superspreaders ,Organisms ,Biology and Life Sciences ,Correction ,RC581-607 ,biology.organism_classification ,Invertebrates ,Evolutionary biology ,sexual dimorphism ,genetic variation ,Genetic Polymorphism ,Animal Studies ,Parasitology ,heterogeneity ,Immunologic diseases. Allergy ,Zoology ,Entomology ,Drosophila C virus ,Viral Transmission and Infection ,Population Genetics - Abstract
Host heterogeneity in disease transmission is widespread but precisely how different host traits drive this heterogeneity remains poorly understood. Part of the difficulty in linking individual variation to population-scale outcomes is that individual hosts can differ on multiple behavioral, physiological and immunological axes, which will together impact their transmission potential. Moreover, we lack well-characterized, empirical systems that enable the quantification of individual variation in key host traits, while also characterizing genetic or sex-based sources of such variation. Here we used Drosophila melanogaster and Drosophila C Virus as a host-pathogen model system to dissect the genetic and sex-specific sources of variation in multiple host traits that are central to pathogen transmission. Our findings show complex interactions between genetic background, sex, and female mating status accounting for a substantial proportion of variance in lifespan following infection, viral load, virus shedding, and viral load at death. Two notable findings include the interaction between genetic background and sex accounting for nearly 20% of the variance in viral load, and genetic background alone accounting for ~10% of the variance in viral shedding and in lifespan following infection. To understand how variation in these traits could generate heterogeneity in individual pathogen transmission potential, we combined measures of lifespan following infection, virus shedding, and previously published data on fly social aggregation. We found that the interaction between genetic background and sex explained ~12% of the variance in individual transmission potential. Our results highlight the importance of characterising the sources of variation in multiple host traits to understand the drivers of heterogeneity in disease transmission., Author summary Host heterogeneity in pathogen transmission presents a major hurdle to predicting and minimizing the spread of infectious agents. Part of the difficulty in linking individual variation to epidemic outcomes is that individual hosts can vary on multiple behavioral, physiological, immunological axes that may affect their transmission potential. Moreover, we lack well-characterized empirical systems that allow to measure multiple facets of individual variation in pathogen transmission. In this work, we capitalize on the strengths of the fruit fly Drosophila as an established and powerful model system for genetics, behavior, and immunity. We provide individual-level data on several axes of infection and test how each of these components experiences variation arising from host genetic background, sex, and mating status. We are therefore able to identify the sources of host heterogeneity (i.e., genetic background, sex) and the specific host traits (social aggregation, pathogen shedding, infection duration) that are most important in determining disease dynamics. We find that a substantial proportion of between-individual heterogeneity in disease transmission is explained by genotype-by-sex interactions affecting the likelihood that individuals will shed virus, but also how much they are likely to shed.
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- 2021
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41. Discutindo a Lei 13.146 – Lei Brasileira de Inclusão
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Nathalia do Vale e Sarmento and Francisca Keyle de F. Vale Monteiro
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- 2021
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42. Biomarker Characterization and Prediction of Virulence and Antibiotic Resistance from Helicobacter pylori Next Generation Sequencing Data
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Joana S. Vital, Luís Tanoeiro, Ricardo Lopes-Oliveira, and Filipa F. Vale
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Molecular Biology ,Biochemistry - Abstract
The Gram-negative bacterium Helicobacter pylori colonizes c.a. 50% of human stomachs worldwide and is the major risk factor for gastric adenocarcinoma. Its high genetic variability makes it difficult to identify biomarkers of early stages of infection that can reliably predict its outcome. Moreover, the increasing antibiotic resistance found in H. pylori defies therapy, constituting a major human health problem. Here, we review H. pylori virulence factors and genes involved in antibiotic resistance, as well as the technologies currently used for their detection. Furthermore, we show that next generation sequencing may lead to faster characterization of virulence factors and prediction of the antibiotic resistance profile, thus contributing to personalized treatment and management of H. pylori-associated infections. With this new approach, more and permanent data will be generated at a lower cost, opening the future to new applications for H. pylori biomarker identification and antibiotic resistance prediction.
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- 2022
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43. Distribution, morphology and composition of mesophotic ‘reefs’ on the Amazon Continental Margin
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Nicholas F. Vale, Juan C. Braga, Rodrigo L. de Moura, Leonardo T. Salgado, Fernando C. de Moraes, Claudia S. Karez, Rodrigo T. de Carvalho, Paulo S. Salomon, Pedro S. Menandro, Gilberto M. Amado-Filho, and Alex C. Bastos
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Geochemistry and Petrology ,Geology ,Oceanography - Published
- 2022
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44. Bacteriophages of Helicobacter pylori
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Johanna Stepanian, Filipa F. Vale, Angela B Muñoz, Alba Alicia Trespalacios, and Repositório da Universidade de Lisboa
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Microbiology (medical) ,phage therapy ,Phage therapy ,Mini Review ,medicine.medical_treatment ,phage–host interaction ,Population ,lcsh:QR1-502 ,Virulence ,Biology ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,Antibiotic resistance ,bacteriophage ,medicine ,education ,prophage genetic diversity ,Pathogen ,Prophage ,030304 developmental biology ,0303 health sciences ,education.field_of_study ,Helicobacter pylori ,030306 microbiology ,biology.organism_classification ,Gastritis ,medicine.symptom - Abstract
The bacterium Helicobacter pylori colonize the stomach in approximately half of the world’s population. Infection with this bacterium is associated with gastritis, peptic ulcer, adenocarcinoma, and gastric mucosa-associated lymphoid tissue lymphoma. Besides being a pathogen with worldwide prevalence, H. pylori show increasingly high antibiotic resistance rates, making the development of new therapeutic strategies against this bacterium challenging. Furthermore, H. pylori is a genetically diverse bacterium, which may be influenced by the presence of mobile genomic elements, including prophages. In this review, we analyze these issues and summarize various reports and findings related to phages and H. pylori, discussing the relationship between the presence of these elements and the genomic diversity, virulence, and fitness of this bacterium. We also analyze the state of the knowledge on the potential utility of bacteriophages as a therapeutic strategy for H. pylori., This work was supported by the following sources: AM is a recipient of a scholarship from the Centro de Estudios Interdisciplinarios Básicos y Aplicados (CEIBA Foundation), Colombia. AM, JS, and AT are recipients of a project grant (120380763025/2018) from the Departamento Administrativo de Ciencia, Tecnología e Innovación de Colombia (Colciencias) and a project grant (PPTA_7676) from Research Vice-Rectory, Pontificia Universidad Javeriana. FV is the recipient of a project grant (PTDC/BTM-SAL/28978/2017) from the Fundação para a Ciência e a Tecnologia (FCT).
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- 2020
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45. Genotype and sex-based host variation in behaviour and susceptibility drives population disease dynamics
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Lauren A. White, Pedro F. Vale, Jonathon A. Siva-Jothy, and Meggan E. Craft
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0106 biological sciences ,transmission heterogeneity ,Genotype ,Population ,Population Dynamics ,social aggregation ,Context (language use) ,010603 evolutionary biology ,01 natural sciences ,drosophila melanogaster ,General Biochemistry, Genetics and Molecular Biology ,virus shedding ,Disease Outbreaks ,03 medical and health sciences ,Sex Factors ,Animals ,education ,030304 developmental biology ,General Environmental Science ,disease transmission ,0303 health sciences ,education.field_of_study ,General Immunology and Microbiology ,biology ,contact networks ,Ecology ,Host (biology) ,Transmission (medicine) ,Outbreak ,General Medicine ,biology.organism_classification ,disease modelling ,Drosophila melanogaster ,Susceptible individual ,Evolutionary biology ,General Agricultural and Biological Sciences ,Drosophila C virus - Abstract
Host heterogeneity in pathogen transmission is widespread and presents a major hurdle to predicting and minimizing disease outbreaks. Using Drosophila melanogaster infected with Drosophila C virus as a model system, we integrated experimental measurements of social aggregation, virus shedding, and disease-induced mortality from different genetic lines and sexes into a disease modelling framework. The experimentally measured host heterogeneity produced substantial differences in simulated disease outbreaks, providing evidence for genetic and sex-specific effects on disease dynamics at a population level. While this was true for homogeneous populations of single sex/genetic line, the genetic background or sex of the index case did not alter outbreak dynamics in simulated, heterogeneous populations. Finally, to explore the relative effects of social aggregation, viral shedding and mortality, we compared simulations where we allowed these traits to vary, as measured experimentally, to simulations where we constrained variation in these traits to the population mean. In this context, variation in infectiousness, followed by social aggregation, was the most influential component of transmission. Overall, we show that host heterogeneity in three host traits dramatically affects population-level transmission, but the relative impact of this variation depends on both the susceptible population diversity and the distribution of population-level variation.
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- 2020
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46. Larval diet affects adult reproduction but not survival regardless of injury and infection stress inDrosophila melanogaster
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Craig A. Walling, Eevi Savola, and Pedro F. Vale
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Larva ,biology ,media_common.quotation_subject ,fungi ,Zoology ,biology.organism_classification ,Ageing ,Juvenile ,Drosophila melanogaster ,Reproduction ,Desiccation ,Pseudomonas entomophila ,Pathogen ,media_common - Abstract
Early-life conditions have profound effects on many life-history traits. In particular, early-life diet affects both juvenile development, and adult survival and reproduction. Early-life diet also has consequences for the ability of adults to withstand stressors such as starvation, temperature and desiccation. However, it is less well known how early-life diet influences the ability of adults to respond to infection. Here we test whether varying the larval diet of femaleDrosophila melanogaster(through altering protein to carbohydrate ratio, P:C) influences the long-term response to injury and infection with the bacterial pathogenPseudomonas entomophila. Given previous work manipulating adult dietary P:C, we predicted that adults from larvae raised on higher P:C diets would be more likely to survive infection and have increased reproduction, but shorter lifespans and an increased rate of ageing. For larval development, we predicted that low P:C would lead to a longer development time and lower viability. We found that early-life and lifetime egg production were highest at intermediate to high larval P:C diets, but there was no effect of larval P:C on adult survival. Larval diet had no effect on survival or reproduction post-infection. Larval development was quickest on intermediate P:C and egg-to-pupae and egg-to-adult viability were higher on higher P:C. Overall, despite larval P:C affecting several traits measured in this study, we saw no evidence that larval P:C altered the consequence of infection or injury for adult survival and early-life and lifetime reproduction. Taken together, these data suggest that larval diets appear to have a limited impact on adult response to infection.
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- 2020
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47. Carry on caring: infected females maintain their level of parental care despite suffering high mortality
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Katy M. Monteith, Per T. Smiseth, Tom Ratz, and Pedro F. Vale
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biology ,business.industry ,Offspring ,High mortality ,Physiology ,Nicrophorus vespilloides ,biology.organism_classification ,Immune system ,Immunity ,Burying beetle ,Medicine ,business ,Paternal care ,Immune gene - Abstract
Parental care is a key component of an organism’s reproductive strategy that is thought to trade-off with allocation towards immunity. Yet it is unclear how caring parents respond to pathogens: do infected parents reduce their amount of care as a sickness behaviour or simply from being ill, or do they prioritise their offspring by maintaining high levels of care? Here we explored the consequences of infection by the pathogenSerratia marcescenson mortality, time spent providing care, reproductive output, and expression of immune genes of female parents in the burying beetleNicrophorus vespilloides. We compared untreated control females with infected females that were inoculated with live bacteria, immune-challenged females that were inoculated with heat-killed bacteria, and injured females that were injected with buffer. We found that infected and immune-challenged females mounted an immune response and that infected females suffered increased mortality. Nevertheless, infected and immune-challenged females maintained their normal level of care and reproductive output. There was thus no evidence that infection led to either a decrease or an increase in parental care or reproductive output. Our results show that parental care, which is generally highly flexible, can remain remarkably robust and consistent despite the elevated mortality caused by infection by pathogens. Overall, these findings suggest that infected females maintain a high level of parental care; a strategy that may ensure that offspring receive the necessary amount of care but that might be detrimental to the parents’ own survival or that may even facilitate disease transmission to offspring.
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- 2020
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48. Testing evolutionary explanations for the lifespan benefit of dietary restriction in Drosophila melanogaster
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Katy M. Monteith, Eevi Savola, Craig A. Walling, Clara Montgomery, Pedro F. Vale, and Fergal M Waldron
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Calorie ,biology ,Ageing ,media_common.quotation_subject ,Zoology ,Limiting ,Drosophila melanogaster ,Reproduction ,Fecundity ,biology.organism_classification ,media_common - Abstract
Dietary restriction (DR), limiting calories or specific nutrients, extends lifespan across diverse taxa. This lifespan extension has been explained as diet-mediated changes in the trade-off between lifespan and reproduction, with survival favoured with scarce resources. Another evolutionary hypothesis suggests the selective benefit of the response is the maintenance of reproduction. This hypothesis predicts that lifespan extension is a side effect of benign laboratory conditions, where DR individuals are frailer and unable to deal with additional stressors, and thus lifespan extension should disappear under more stressful conditions. We tested this by rearing outbred female Drosophila melanogaster on 10 different protein:carbohydrate diets. Flies were either infected with a bacterial pathogen (Pseudomonas entomophila), injured or unstressed. We monitored lifespan, fecundity and ageing measures. DR extended lifespan and reduced reproduction irrespective of injury and infection. These results do not support lifespan extension under DR being a side effect of benign laboratory conditions.
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- 2020
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49. Pituitary tumor resection in a patient with SARS-CoV-2 (COVID-19) infection. A case report and suggested airway management guidelines
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Luiz M. da Costa Lima Filho, Henrique F. Vale, Lakshmi N Kurnutala, James S. Neill, Christiano Dos Santos E Santos, and Cristiane A. Tuma Santos
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medicine.medical_specialty ,medicine.medical_treatment ,Airway management ,Pituitary neoplasm ,medicine.disease_cause ,Article ,Anestesia ,lcsh:RD78.3-87.3 ,Ptosis ,Anesthesiology ,medicine ,RD78.3-87.3 ,Coronavirus ,Diplopia ,Tumor pituitário ,business.industry ,Infecção por SARS-CoV-2 (COVID-19) ,Pituitary tumors ,Pituitary apoplexy ,General Medicine ,Emergency department ,medicine.disease ,Surgery ,SARS-CoV-2 infection (COVID-19) ,lcsh:Anesthesiology ,medicine.symptom ,business ,Pituitary tumor - Abstract
The 2020 pandemic caused by the novel coronavirus, COVID-19, had its headquarters in China. It causes Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and presents a broad spectrum of clinical manifestations, ranging from entirely asymptomatic through severe acute respiratory failure and death. Presuming a significant quantity of ventilator-dependent patients, several institutions strategically delayed elective surgeries. Particularly procedures performed involving the nasal mucosa, such as a transsphenoidal approach of the pituitary gland, considering the tremendous level of viral shedding. Nevertheless, critical cases demand expeditious resolution. Those situations are severe pituitary apoplexy, declining consciousness level, or risk of acute visual loss. This case presents a successful urgent perioperative management of a 47 year-old male COVID-19 positive patient who presented to the Emergency Department with a left frontal headache that culminated with diplopia, left eye ptosis, and left visual acuity loss after 5 days. Transsphenoidal hypophysectomy was uneventfully performed, and the patient was discharged from the hospital on postoperative day four. It additionally describes in detail the University of Mississippi Medical Center airway management algorithm for patients infected with the novel coronavirus who need emergent surgical attention. Resumo: A pandemia de 2020, causada pelo novo coronavírus, COVID-19, teve seu epicentro na China. Causa Síndrome Respiratória Aguda Grave pelo Coronavírus 2 (SARS-CoV-2) e apresenta um amplo espectro de manifestações clínicas, que vão desde nenhum sintoma a insuficiência respiratória aguda grave e óbito. Com a expectativa de um número significativo de pacientes dependentes de ventilador, várias instituições estrategicamente adiaram cirurgias eletivas. Esse é o caso principalmente de procedimentos envolvendo a mucosa nasal, como a via transesfenoidal para a hipófise, devido ao nível imenso de disseminação de material viral. Não obstante, casos críticos requerem resolução acelerada. Essas situações são grave apoplexia hipofisária, diminuição do nível de consciência ou risco de perda visual aguda. O presente caso relata o manejo perioperatório bem sucedido de urgência de paciente do sexo masculino de 47 anos de idade com COVID-19 que chegou ao Pronto Socorro com cefaléia frontal à esquerda que culminou com diplopia, ptose do olho esquerdo e perda de acuidade visual à esquerda após 5 dias. A hipofisectomia transesfenoidal ocorreu sem intercorrências e o paciente recebeu alta do hospital no quarto dia do pós-operatório. Adicionalmente, descrevemos em detalhe o algoritmo de manejo de via aérea da University of Mississippi Medical Center para pacientes infectados pelo novo coronavírus e que necessitam de atenção cirúrgica de emergência.
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- 2020
50. Drosophila as a model system to investigate the effects of mitochondrial variation on innate immunity
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Tiina S. Salminen and Pedro F. Vale
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0301 basic medicine ,lcsh:Immunologic diseases. Allergy ,Mitochondrial DNA ,Immunology ,oxidative phosphorylation ,Review ,Mitochondrion ,reactive oxygen species (ROS) ,Genome ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Immunity ,Immunology and Allergy ,oxidative phosphorylation (OXPHOS) ,innate immunity ,reactive oxygen species ,Genetics ,Innate immune system ,biology ,mtDNA ,biology.organism_classification ,infection ,3. Good health ,mitochondria ,Crosstalk (biology) ,030104 developmental biology ,Drosophila melanogaster ,cybrid ,lcsh:RC581-607 ,030215 immunology - Abstract
Understanding why the response to infection varies between individuals remains one of the major challenges in immunology and infection biology. A substantial proportion of this heterogeneity can be explained by individual genetic differences which result in variable immune responses, and there are many examples of polymorphisms in nuclear-encoded genes that alter immunocompetence. However, how immunity is affected by genetic polymorphism in an additional genome, inherited maternally inside mitochondria (mtDNA), has been relatively understudied. Mitochondria are increasingly recognized as important mediators of innate immune responses, not only because they are the main source of energy required for costly immune responses, but also because by-products of mitochondrial metabolism, such as reactive oxygen species (ROS), may have direct microbicidal action. Yet, it is currently unclear how naturally occurring variation in mtDNA contributes to heterogeneity in infection outcomes. In this review article, we describe potential sources of variation in mitochondrial function that may arise due to mutations in vital nuclear and mitochondrial components of energy production or due to a disruption in mito-nuclear crosstalk. We then highlight how these changes in mitochondrial function can directly impact immune responses, focusing on their effects on ATP- and ROS-generating pathways, as well as immune signalling. Finally, we outline how being a powerful and genetically tractable model of infection, immunity and mitochondrial genetics makes the fruit fly Drosophila melanogaster ideally suited to dissect mitochondrial genetic effects on innate immune responses to infection.
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- 2020
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