170 results on '"bottleneck"'
Search Results
2. Learning to Learn with Variational Information Bottleneck for Domain Generalization
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Du, Y., Xu, J., Xiong, H., Qiu, Q., Zhen, X., Snoek, C.G.M., Shao, L., Vedaldi, A., Bischof, H., Brox, T., Frahm, J.M., and Intelligent Sensory Information Systems (IVI, FNWI)
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Theoretical computer science ,Meta learning (computer science) ,Computer science ,Generalization ,Learning to learn ,Probabilistic logic ,Information bottleneck method ,02 engineering and technology ,Mutual information ,010501 environmental sciences ,01 natural sciences ,Domain (software engineering) ,Classifier (linguistics) ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,0105 earth and related environmental sciences - Abstract
Domain generalization models learn to generalize to previously unseen domains, but suffer from prediction uncertainty and domain shift. In this paper, we address both problems. We introduce a probabilistic meta-learning model for domain generalization, in which classifier parameters shared across domains are modeled as distributions. This enables better handling of prediction uncertainty on unseen domains. To deal with domain shift, we learn domain-invariant representations by the proposed principle of meta variational information bottleneck, we call MetaVIB. MetaVIB is derived from novel variational bounds of mutual information, by leveraging the meta-learning setting of domain generalization. Through episodic training, MetaVIB learns to gradually narrow domain gaps to establish domain-invariant representations, while simultaneously maximizing prediction accuracy. We conduct experiments on three benchmarks for cross-domain visual recognition. Comprehensive ablation studies validate the benefits of MetaVIB for domain generalization. The comparison results demonstrate our method outperforms previous approaches consistently.
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- 2020
3. A mathematical model and artificial bee colony algorithm for the lexicographic bottleneck mixed-model assembly line balancing problem
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Kadir Buyukozkan, Sule Itir Satoglu, David Z. Zhang, Ibrahim Kucukkoc, and Mühendislik Fakültesi
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0209 industrial biotechnology ,Mathematical optimization ,Workstation ,Mixed-Model Lines ,Computer science ,Assembly Line Balancing ,Reliability (computer networking) ,Artificial Bee Colony Algorithm ,02 engineering and technology ,Solver ,Lexicographical order ,Industrial and Manufacturing Engineering ,Bottleneck ,law.invention ,Domain (software engineering) ,Artificial bee colony algorithm ,020901 industrial engineering & automation ,Lexicographic Bottleneck ,Artificial Intelligence ,law ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Line (text file) ,Software ,Mathematical Model - Abstract
Küçükkoç, İbrahim (Balikesir Author), Typically, the total number of required workstations are minimised for a given cycle time (this problem is referred to as type-1), or cycle time is minimised for a given number of workstations (this problem is referred to as type-2) in traditional balancing of assembly lines. However, variation in workload distributions of workstations is an important indicator of the quality of the obtained line balance. This needs to be taken into account to improve the reliability of an assembly line against unforeseeable circumstances, such as breakdowns or other failures. For this aim, a new problem, called lexicographic bottleneck mixed-model assembly line balancing problem (LB-MALBP), is presented and formalised. The lexicographic bottleneck objective, which was recently proposed for the simple single-model assembly line system in the literature, is considered for a mixed-model assembly line system. The mathematical model of the LB-MALBP is developed for the first time in the literature and coded in GAMS solver, and optimal solutions are presented for some small scale test problems available in the literature. As it is not possible to get optimal solutions for the large-scale instances, an artificial bee colony algorithm is also implemented for the solution of the LB-MALBP. The solution procedures of the algorithm are explored illustratively. The performance of the algorithm is also assessed using derived well-known test problems in this domain and promising results are observed in reasonable CPU times.
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- 2019
4. On the Bottleneck Complexity of MPC with Correlated Randomness
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Orlandi, Claudio, Ravi, Divya, Scholl, Peter, Hanaoka, Goichiro, Shikata, Junji, and Watanabe, Yohei
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Computer Science::Cryptography and Security - Abstract
At ICALP 2018, Boyle et al. introduced the notion of the bottleneck complexity of a secure multi-party computation (MPC) protocol. This measures the maximum communication complexity of any one party in the protocol, aiming to improve load-balancing among the parties. In this work, we study the bottleneck complexity of MPC in the preprocessing model, where parties are given correlated randomness ahead of time. We present two constructions of bottleneck-efficient MPC protocols, whose bottleneck complexity is independent of the number of parties: 1.A protocol for computing abelian programs, based only on one-way functions.2.A protocol for selection functions, based on any linearly homomorphic encryption scheme. Compared with previous bottleneck-efficient constructions, our protocols can be based on a wider range of assumptions, and avoid the use of fully homomorphic encryption.
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- 2022
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5. A note on the complexity of the bilevel bottleneck assignment problem
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Dennis Fischer, Komal Muluk, and Gerhard J. Woeginger
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Computational Theory and Mathematics ,Management Science and Operations Research ,Theoretical Computer Science ,Management Information Systems - Abstract
4OR (2021). doi:10.1007/s10288-021-00499-6, Published by Springer, Berlin ; Heidelberg
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- 2022
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6. Steiner tree heuristic in the Euclidean d-space using bottleneck distances
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Lorenzen, Stephan Sloth, Winter, Pawel, Goldberg, Andrew V., and Kulikov, Alexander S.
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Faculty of Science ,heuristic ,Steiner minimal tree ,bottleneck distances ,d-dimensional Euclidean space - Abstract
Some of the most efficient heuristics for the Euclidean Steiner minimal tree problem in the d-dimensional space, d ≥2, use Delaunay tessellations and minimum spanning trees to determine small subsets of geometrically close terminals. Their low-cost Steiner trees are determined and concatenated in a greedy fashion to obtain a low cost tree spanning all terminals. The weakness of this approach is that obtained solutions are topologically related to minimum spanning trees. To avoid this and to obtain even better solutions, bottleneck distances are utilized to determine good subsets of terminals without being constrained by the topologies of minimum spanning trees. Computational experiments show a significant solution quality improvement.
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- 2016
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7. Optimizing Database Architecture for the New Bottleneck: Memory Access
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Martin L. Kersten, Peter Boncz, Stefan Manegold, Database Architectures, Standardization and Knowledge Transfer, and Intelligent Sensory Information Systems (IVI, FNWI)
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Hardware and Architecture ,CPU cache ,Computer science ,Translation lookaside buffer ,Uniform memory access ,Data architecture ,Parallel computing ,Cache ,Data structure ,CAS latency ,Bottleneck ,Information Systems ,Memory access pattern - Abstract
In the past decade, advances in the speed of commodity CPUs have far out-paced advances in memory latency. Main-memory access is therefore increasingly a performance bottleneck for many computer applications, including database systems. In this article, we use a simple scan test to show the severe impact of this bottleneck. The insights gained are translated into guidelines for database architecture, in terms of both data structures and algorithms. We discuss how vertically fragmented data structures optimize cache performance on sequential data access. We then focus on equi-join, typically a random-access operation, and introduce radix algorithms for partitioned hash-join. The performance of these algorithms is quantified using a detailed analytical model that incorporates memory access cost. Experiments that validate this model were performed on the Monet database system. We obtained exact statistics on events such as TLB misses and L1 and L2 cache misses by using hardware performance counters found in modern CPUs. Using our cost model, we show how the carefully tuned memory access pattern of our radix algorithms makes them perform well, which is confirmed by experimental results.
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- 2000
8. On the recognition of permuted bottleneck Monge matrices
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Klinz, B., Rudolf, R., Woeginger, G.J., and Lengauer, T.
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Combinatorics ,Matrix (mathematics) ,Mathematics::Combinatorics ,Mathematics::Complex Variables ,Mathematics::Analysis of PDEs ,M-matrix ,Bottleneck ,Mathematics - Abstract
An n × m matrix A is called bottleneck Monge matrix if max {aij, ars}
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- 1993
9. ROA loss from multiple misfits: A Bottleneck Approach
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Peter Klaas, Jørgen Lauridsen, Dorthe Haakonsson, Snow, Charles, Burton, Richard M.., Håkonsson, Dorthe Døjbak, Eriksen, Bo, Burton, Richard, and Snow, C.C.
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- 2006
10. Realistic Workload Scheduling Policies for Taming the Memory Bandwidth Bottleneck of SMPs
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Antonopoulos, C.D., Nikolopoulos, Dimitrios, and Papatheodorou, T.S.
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- 2004
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11. An innovative textile product proposal based on sustainability: recycling wastes from the wool industry
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Ana Cristina Broega, Regis Puppim, and Universidade do Minho
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Textile innovation ,Engineering ,Textile industry ,Municipal solid waste ,Textile ,Science & Technology ,business.industry ,Manufacturing engineering ,Bottleneck ,Textile recycling and reuse ,Sustainability ,Engenharia e Tecnologia::Engenharia dos Materiais ,Wool ,11. Sustainability ,Field research ,Product (category theory) ,business ,Produção e consumo sustentáveis - Abstract
In a world where consumers are increasingly more aware of the issues on Sustainability, this scientific article presents a partial stage of the PhD research that exposes an investigation that led to the development of a new textile product for recycling clean solid waste from the wool industry. Even at an early stage, the prototypes that were achieved have a high potential, as an innovative and sustainable propose of product. The research development includes scientific methods such as Case Study, Field Research and laboratory prototyping (experimental research issue). For the study, a local and important Wool Textile Industry was chosen, for analysis, diagnostic and confirmation of the Literature Review, focusing on the industrial textile clean wastes that most express the production bottleneck. At the end, the article foresees the next steps of the research, in order to improve and characterize the product, enhancing the possibilities of sustainable aspects on it.
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- 2022
12. A∞ Persistent Homology Estimates Detailed Topology from Pointcloud Datasets
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Anastasios Stefanou, Francisco Belchí, Engineering and Physical Sciences Research Council (UK), University of Southampton, Consejo Superior de Investigaciones Científicas (España), Ministerio de Economía y Competitividad (España), and National Science Foundation (US)
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Topological data analysis (TDA) ,Cup product ,Betti number ,Stability (learning theory) ,Applied algebraic topology ,Formal spaces ,Topology ,Theoretical Computer Science ,Persistent cohomology ,Combinatorics ,Discrete Mathematics and Combinatorics ,Betti numbers ,Persistent homology ,Finite set ,Mathematics ,Interleaving distance ,Massey products ,Loop spaces ,Topological estimation ,A∞-persistence ,Continuous function (set theory) ,A∞-coalgebra ,Function (mathematics) ,Metric space ,Bottleneck distance ,Computational Theory and Mathematics ,Functoriality ,Geometric estimation ,Linking number ,Geometry and Topology ,Stability ,A∞persistent homology ,A∞-algebra ,Subspace topology - Abstract
Let X be a closed subspace of a metric space M. It is well known that, under mild hypotheses, one can estimate the Betti numbers of X from a finite set P⊂ M of points approximating X. In this paper, we show that one can also use P to estimate much more detailed topological properties of X. We achieve this by proving the stability of A-persistent homology. In its most general case, this stability means that given a continuous function f: Y→ R on a topological space Y, small perturbations in the function f imply at most small perturbations in the family of A-barcodes. This work can be viewed as a proof of the stability of cup-product and generalized-Massey-products persistence. The technical key of this paper consists of figuring out a setting which makes A-persistence functorial., We would like to thank Justin Curry for valuable feedback on previous versions of this paper. F. Belchí was partially supported by the EPSRC grant EPSRC EP/N014189/1 (Joining the dots) to the University of Southampton and by the Spanish State Research Agency through the María de Maeztu Seal of Excellence to IRI (MDM-2016-0656). A. Stefanou was partially supported by the National Science Foundation through grants CCF-1740761 (TRIPODS TGDA@OSU) and DMS-1440386 (Mathematical Biosciences Institute at the Ohio State University).
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- 2022
13. How index selection, compression, and recording schedule impact the description of ecological soundscapes
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Becky E Heath, C. David L. Orme, Robert M. Ewers, Sarab S. Sethi, Lorenzo Picinali, and World Wide Fund for Nature (WWF)
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Soundscape ,Computer science ,BETA ,Environmental Sciences & Ecology ,AVIAN SPECIES RICHNESS ,ACOUSTIC INDEXES ,Bottleneck ,File size ,0603 Evolutionary Biology ,Robustness (computer science) ,FORESTS ,REGRESSION ,Ecology, Evolution, Behavior and Systematics ,QH540-549.5 ,Nature and Landscape Conservation ,Original Research ,Evolutionary Biology ,Science & Technology ,Ecology ,LANDSCAPE ,0602 Ecology ,business.industry ,Fingerprint (computing) ,TEMPERATE ,Pattern recognition ,Computer data storage ,Artificial intelligence ,business ,Precision and recall ,Life Sciences & Biomedicine ,Data compression ,Index selection - Abstract
Acoustic indices derived from environmental soundscape recordings are being used to monitor ecosystem health and vocal animal biodiversity. Soundscape data can quickly become very expensive and difficult to manage, so data compression or temporal down‐sampling are sometimes employed to reduce data storage and transmission costs. These parameters vary widely between experiments, with the consequences of this variation remaining mostly unknown.We analyse field recordings from North‐Eastern Borneo across a gradient of historical land use. We quantify the impact of experimental parameters (MP3 compression, recording length and temporal subsetting) on soundscape descriptors (Analytical Indices and a convolutional neural net derived AudioSet Fingerprint). Both descriptor types were tested for their robustness to parameter alteration and their usability in a soundscape classification task.We find that compression and recording length both drive considerable variation in calculated index values. However, we find that the effects of this variation and temporal subsetting on the performance of classification models is minor: performance is much more strongly determined by acoustic index choice, with Audioset fingerprinting offering substantially greater (12%–16%) levels of classifier accuracy, precision and recall.We advise using the AudioSet Fingerprint in soundscape analysis, finding superior and consistent performance even on small pools of data. If data storage is a bottleneck to a study, we recommend Variable Bit Rate encoded compression (quality = 0) to reduce file size to 23% file size without affecting most Analytical Index values. The AudioSet Fingerprint can be compressed further to a Constant Bit Rate encoding of 64 kb/s (8% file size) without any detectable effect. These recommendations allow the efficient use of restricted data storage whilst permitting comparability of results between different studies., Soundscapes were recorded from different forest structures in Malaysian Borneo. Data collection variation was simulated, and all data groups were analyzed via usual acoustic indices and a CNN‐derived AudioSet Fingerprint. The effect of variation in data collection was compared between the two types of soundscape descriptor, finding the AudioSet Fingerprint to be a stronger and more robust descriptor of soundscapes.
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- 2021
14. Contrastive learning for view classification of echocardiograms
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Bernhard Kainz, Jorge Oliveira, Arian Beqiri, Shan Gao, Agisilaos Chartsias, Angela Mumith, and Kanwal K. Bhatia
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FOS: Computer and information sciences ,Cardiac function curve ,Technology ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,education ,Computer Science - Computer Vision and Pattern Recognition ,Machine learning ,computer.software_genre ,Cardiac Ultrasound ,Bottleneck ,Computer Science, Artificial Intelligence ,RECOMMENDATIONS ,Engineering ,Artificial Intelligence & Image Processing ,Engineering, Biomedical ,Science & Technology ,business.industry ,Deep learning ,Radiology, Nuclear Medicine & Medical Imaging ,Baseline model ,LOCALIZATION ,Contrastive learning ,Classification ,Automation ,Improved performance ,ComputingMethodologies_PATTERNRECOGNITION ,Echocardiography ,Computer Science ,Artificial intelligence ,business ,F1 score ,computer ,Life Sciences & Biomedicine - Abstract
Analysis of cardiac ultrasound images is commonly performed in routine clinical practice for quantification of cardiac function. Its increasing automation frequently employs deep learning networks that are trained to predict disease or detect image features. However, such models are extremely data-hungry and training requires labelling of many thousands of images by experienced clinicians. Here we propose the use of contrastive learning to mitigate the labelling bottleneck. We train view classification models for imbalanced cardiac ultrasound datasets and show improved performance for views/classes for which minimal labelled data is available. Compared to a naive baseline model, we achieve an improvement in F1 score of up to 26% in those views while maintaining state-of-the-art performance for the views with sufficiently many labelled training observations., Accepted in ASMUS workshop of MICCAI 2021
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- 2021
15. Graph rules hierarchy as a tool of collaborative game narration creation
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Michał Okrzesik, Karolina Szypura, Leszek Nowak, Wojciech Palacz, Mikołaj Wrona, Iwona Grabska-Gradzińska, Dominik Urban, Andrzej Mikołajczyk, Jakub Kuligowicz, Ewa Grabska, Krzysztof Mańka, and Agnieszka Konopka
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Decision support system ,Hierarchy ,decision support ,collaborative design ,Computer science ,Bottleneck ,graph transformations ,Workflow ,Character (mathematics) ,Human–computer interaction ,Graph (abstract data type) ,Narrative ,procedural storytelling ,Representation (mathematics) - Abstract
This paper presents a computer tool for collaborative narration creation based on graph rules hierarchy that was developed and tested with collaboration of students of Jagiellonian University in Poland. The tool is made of two modules: internal representation of game world graph model and animation system: The former describes the narration points and story arcs and the latter uses basic animations and blends them together to create animated sequences. The opportunity to develop the system as a group effort allowed to identify and address workflow bottleneck and proved that using layered graph representation of the functional elements of the story, characters, locations, and objects is viable method to design plots and quest for video games. Dynamically changing graph can be visualized at any stage and helps to perceive the story as animated sequences. This on the other hand if used for video games story design enables to observe character actions, possible paths the player can take and quickly iterate on the story components. The contribution of this paper is to propose an innovative tool which allow the designers and animators to work together within one platform.
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- 2021
16. Accelerating Neural Network Training with Distributed Asynchronous and Selective Optimization (DASO)
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Charlotte Debus, James Kahn, Achim Streit, Fabrice von der Lehr, Markus Götz, Daniel Coquelin, and Martin Siggel
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Optimization ,FOS: Computer and information sciences ,Computer Science - Machine Learning ,Computer engineering. Computer hardware ,Computer science ,Distributed computing ,Neural Network ,Synchronizing ,Stale gradients ,Information technology ,Multi-GPU ,Bottleneck ,Machine Learning (cs.LG) ,TK7885-7895 ,Machine Learning ,Data parallel training ,Computer cluster ,Synchronization (computer science) ,Distributed Training ,Data parallelism ,Artificial neural network ,Node (networking) ,DATA processing & computer science ,Process (computing) ,QA75.5-76.95 ,T58.5-58.64 ,neural networks ,multi-node ,data parallel training ,machine learning ,Computer Science - Distributed, Parallel, and Cluster Computing ,Asynchronous communication ,stale gradients ,Electronic computers. Computer science ,Computer Science ,Multi-node ,Distributed, Parallel, and Cluster Computing (cs.DC) ,ddc:004 ,Neural networks ,multi-GPU - Abstract
With increasing data and model complexities, the time required to train neural networks has become prohibitively large. To address the exponential rise in training time, users are turning to data parallel neural networks (DPNN) and large-scale distributed resources on computer clusters. Current DPNN approaches implement the network parameter updates by synchronizing and averaging gradients across all processes with blocking communication operations after each forward-backward pass. This synchronization is the central algorithmic bottleneck. We introduce the Distributed Asynchronous and Selective Optimization (DASO) method, which leverages multi-GPU compute node architectures to accelerate network training while maintaining accuracy. DASO uses a hierarchical and asynchronous communication scheme comprised of node-local and global networks while adjusting the global synchronization rate during the learning process. We show that DASO yields a reduction in training time of up to 34% on classical and state-of-the-art networks, as compared to current optimized data parallel training methods.
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- 2021
17. Applying NMR compound identification using NMRfilter to match predicted to experimental data
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Lucas Eliseu de Andrade Silva Quaresma, Ezequiel de Andrade Silva Quaresma, Simon Colreavy-Donnelly, Stefan Kuhn, and Ricardo Moreira Borges
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0303 health sciences ,Magnetic Resonance Spectroscopy ,Compound identification ,Computer science ,Endocrinology, Diabetes and Metabolism ,010401 analytical chemistry ,Clinical Biochemistry ,Experimental data ,Computational biology ,Interactive software ,Dereplication ,01 natural sciences ,Biochemistry ,NMRfilter ,Bottleneck ,NMR ,0104 chemical sciences ,03 medical and health sciences ,Metabolomics ,Drug Discovery ,Identification (biology) ,030304 developmental biology - Abstract
The file attached to this record is the author's final peer reviewed version. The Publisher's final version can be found by following the DOI link. Introduction Metabolomics is the approach of choice to guide the understanding of biological systems and its molecular intricacies, but compound identification is yet a bottleneck to be overcome. Objective To assay the use of NMRfilter for confidence compound identification based on chemical shift predictions for different datasets. Results We found comparable results using the lead tool COLMAR and NMRfilter. Then, we successfully assayed the use of HMBC to add confidence to the identified compounds. Conclusions NMRfilter is currently under development to become a stand-alone interactive software for high-confidence NMR compound identification and this communication gathers part of its application capabilities.
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- 2020
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18. Automated Rare Event Simulation for Fault Tree Analysis via Minimal Cut Sets
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Budde, Carlos E., Stoelinga, Mariëlle, Hermanns, Holger, Digital Society Institute, and Formal Methods and Tools
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Fault tree analysis ,Computer science ,Importance splitting ,22/2 OA procedure ,Window (computing) ,computer.software_genre ,Bottleneck ,Image (mathematics) ,Rare event simulation ,Tree structure ,Cut ,Rare events ,Dynamic fault trees ,Dependability ,Minimal cut sets ,Data mining ,computer - Abstract
Monte Carlo simulation is a common technique to estimate dependability metrics for fault trees. A bottleneck in this technique is the number of samples needed, especially when the interesting events are rare and occur with low probability. Rare Event Simulation (Open image in new window) reduces the number of samples when analysing rare events. Importance splitting is a Open image in new window method that spawns more simulation runs from promising system states. How promising a state is, is indicated by an importance function, which concentrates the information that makes this method efficient. Importance functions are given by domain and Open image in new window experts. This hinders re-utilisation and involves decisions entailing potential human error. Focusing in (general) fault trees, in this paper we automatically derive importance functions based on the tree structure. For this we exploit a common fault tree concept, namely cut sets: the more elements from a cut set have failed, the higher the importance. We show that the cut-set-derived importance function is an easy-to-implement and simple concept, that can nonetheless compete against another (more involved) automatic importance function for Open image in new window.
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- 2020
19. Polygon stacks and time reference conversions
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Rüdiger Klaehn, Sven Prüfer, Christoph Lenzen, and Maria Theresia Wörle
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020301 aerospace & aeronautics ,Mathematical optimization ,Computer science ,The Intersect ,Resource constraints ,plains ,Aerospace Engineering ,Timeline ,sliders ,02 engineering and technology ,01 natural sciences ,Bottleneck ,Sketch ,Missionstechnologie ,offsets ,polygon stack ,0203 mechanical engineering ,Space and Planetary Science ,0103 physical sciences ,time reference ,Linear combination ,010303 astronomy & astrophysics - Abstract
This paper describes how a time-based planning system, which supports resource constraints, may be extended such that a resource constraint interval does not have to refer to the start- or end-time of the underlying activity but to any linear combination thereof, such as the middle. This way, an activity with multiple resource constraints referring to different time intervals no longer has to be split into sub-activities, which may simplify the planning model and the algorithm. To be able to describe the necessary transformations, we introduce the concept of PolygonStacks and describe the operations which a typical planning engine requires to intersect the sets of consistent timeline entries of all constraints defined on an activity. We then introduce Sliders and Offsets, which allow specifying the constraint intervals in a more generic way as supported in current planning models. Based on this preparation, we can derive two lemmas, which provide the conversions required by Sliders and Offsets. We continue with several conversion examples and point out how to solve the issues which will occur during implementation. A short sketch of the complexity of our current implementation demonstrates that further work on performance should be considered, even though in practice we observe that the bottleneck of calculation remains within profile calculation rather than PolygonStack operations.
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- 2020
20. Public-coin zero-knowledge arguments with (almost) minimal time and space overheads
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Pratik Soni, Alexander R. Block, Justin Holmgren, Alon Rosen, and Ron D. Rothblum
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Protocol (science) ,business.industry ,Computer science ,Cornerstone ,SPACE/TIME ,020206 networking & telecommunications ,Cryptography ,0102 computer and information sciences ,02 engineering and technology ,Certification ,Gas meter prover ,Computer security ,computer.software_genre ,01 natural sciences ,Bottleneck ,ZERO-KNOWLEDGE, ARGUMENTS, SPACE/TIME ,010201 computation theory & mathematics ,Software deployment ,ARGUMENTS ,0202 electrical engineering, electronic engineering, information engineering ,Zero-knowledge proof ,ZERO-KNOWLEDGE ,business ,computer - Abstract
Zero-knowledge protocols enable the truth of a mathematical statement to be certified by a verifier without revealing any other information. Such protocols are a cornerstone of modern cryptography and recently are becoming more and more practical. However, a major bottleneck in deployment is the efficiency of the prover and, in particular, the space-efficiency of the protocol.
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- 2020
21. Biosensors for Biomolecular Computing: a Review and Future Perspectives
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Danilo Demarchi, Rossana Terracciano, Simone Aiassa, and Sandro Carrara
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Computer science ,Emerging technologies ,Biomedical Engineering ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Bottleneck ,law.invention ,symbols.namesake ,Beyond CMOS ,DNA computing ,law ,Biosensing ,Biomolecular ,Enzyme computing ,Ribocomputing ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Computer architecture ,CMOS ,Logic gate ,symbols ,Central processing unit ,0210 nano-technology ,Von Neumann architecture - Abstract
Biomolecular computing is the field of engineering where computation, storage, communication, and coding are obtained by exploiting interactions between biomolecules, especially DNA, RNA, and enzymes. They are a promising solution in a long-term vision, bringing huge parallelism and negligible power consumption. Despite significant efforts in taking advantage of the massive computational power of biomolecules, many issues are still open along the way for considering biomolecular circuits as an alternative or a complement to competing with complementary metal–oxide–semiconductor (CMOS) architectures. According to the Von Neumann architecture, computing systems are composed of a central processing unit, a storage unit, and input and output (I/O). I/O operations are crucial to drive and read the computing core and to interface it to other devices. In emerging technologies, the complexity overhead and the bottleneck of I/O systems are usually limiting factors. While computing units and memories based on biomolecular systems have been successfully presented in literature, the published I/O operations are still based on laboratory equipment without a real development of integrated I/O. Biosensors are suitable devices for transducing biomolecular interactions by converting them into electrical signals. In this work, we explore the latest advancements in biomolecular computing, as well as in biosensors, with focus on technology suitable to provide the required and still missing I/O devices. Therefore, our goal is to picture out the present and future perspectives about DNA, RNA, and enzymatic-based computing according to the progression in its I/O technologies, and to understand how the field of biosensors contributes to the research beyond CMOS.
- Published
- 2020
22. A tuning approach for iterative multiple 3d stencil pipeline on GPUs
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Maurice Peemen, Luis Romero, Siham Tabik, and Electrical Engineering
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020203 distributed computing ,Fission ,GPUs ,Computer science ,Pipeline (computing) ,Process (computing) ,020207 software engineering ,3d stencils ,02 engineering and technology ,Parallel computing ,Stencil ,Bottleneck ,Theoretical Computer Science ,Shared memory ,3d images ,Hardware and Architecture ,0202 electrical engineering, electronic engineering, information engineering ,Anisotropic Nonlinear Diffusion ,Fusion ,Tiling ,Algorithm ,Software ,Information Systems - Abstract
This paper focuses on challenging applications that can be expressed as an iterative pipeline of multiple 3d stencil stages and explores their optimization space on GPUs. For this study, we selected a representative example from the field of digital signal processing, the Anisotropic Nonlinear Diffusion algorithm. An open issue to these applications is to determine the optimal fission/fusion level of the involved stages and whether that combination benefits from data tiling. This implies exploring a large space of all the possible fission/fusion combinations with and without tiling, thus making the process non-trivial. This study provides insights to reduce the optimization tuning space and programming effort of iterative multiple 3d stencils. Our results demonstrate that all combinations that fuse the bottleneck stencil with high halos update cost ( $$>25\%$$ , this percentage can be measured or estimated experimentally for each single stencil) and high registers and shared memory accesses must not be considered in the exploration process. The optimal fission/fusion combination is up to 1.65 $$\times $$ faster than the case in which we fully decompose our stencil without tiling and 5.3 $$\times $$ faster with respect to the fully fused version on the NVIDIA GPUs.
- Published
- 2018
23. Avian beta-defensin variation in bottlenecked populations
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David S. Richardson, Danielle L. Gilroy, Cock van Oosterhout, Jan Komdeur, and Komdeur lab
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0106 biological sciences ,0301 basic medicine ,Seychelles warbler ,Demographic processes ,BALANCING SELECTION ,Demographic history ,Population ,Zoology ,Avian beta-defensins ,Balancing selection ,010603 evolutionary biology ,01 natural sciences ,Bottleneck ,03 medical and health sciences ,Genetic drift ,biology.animal ,ACROCEPHALUS-SECHELLENSIS ,Acrocephalus ,Genetics ,education ,Selection ,Ecology, Evolution, Behavior and Systematics ,education.field_of_study ,Great reed warbler ,biology ,Ecology ,AMINO-ACID SITES ,IMMUNE GENES ,biology.organism_classification ,ANTIMICROBIAL PEPTIDES ,Passerine ,MAJOR HISTOCOMPATIBILITY COMPLEX ,GREAT REED WARBLER ,NATURAL-SELECTION ,030104 developmental biology ,MHC DIVERSITY ,GENETIC DIVERSITY - Abstract
beta-defensins are important components of the vertebrate innate immune system responsible for encoding a variety of anti-microbial peptides. Pathogen-mediated selection is thought to act on immune genes and potentially maintain allelic variation in the face of genetic drift. The Seychelles warbler, Acrocephalus sechellensis, is an endemic passerine that underwent a recent bottleneck in its last remaining population, resulting in a considerable reduction in genome-wide variation. We genotyped avian beta-defensin (AvBD) genes in contemporary (2000-2008) and museum samples (1876-1940) of the Seychelles warbler to investigate whether immunogenetic variation was lost through this bottleneck, and examined AvBD variation across four other Acrocephalus species with varying demographic histories. No variation was detected at four of the six AvBD loci screened in the post-bottleneck population of Seychelles warbler, but two silent nucleotide polymorphisms were identified at AvBD8 and one potentially functional amino-acid variation was observed at AvBD11. Variation in the Seychelles warbler was significantly lower than in the mainland migratory congeneric species investigated, but it similar to that found in other bottlenecked species. In addition, screening AvBD7 in 15 museum specimens of Seychelles warblers sampled prior to the bottleneck (1877-1905) revealed that this locus possessed two alleles previously, compared to the single allele in the contemporary population. Overall, the results show that little AvBD variation remains in the Seychelles warbler, probably as a result of having low AvBD diversity historically rather than the loss of variation due to drift associated with past demographic history. Given the limited pathogen fauna, this lack of variation at the AvBD loci may currently not pose a problem for this isolate population of Seychelles warblers, but it may be detrimental to the species' long-term survival if new pathogens reach the population in the future.
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- 2016
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24. Parallelizing Synthesis from Temporal Logic Specifications by Identifying Equicontrollable States
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Ioannis Filippidis, Richard M. Murray, Sumanth Dathathri, Amato, Nancy M., Hager, Greg, Thomas, Shawna, and Torres-Torriti, Miguel
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Theoretical computer science ,Linear temporal logic ,Fragment (logic) ,Computer science ,Reachability ,Scalability ,State space ,Temporal logic ,Formal methods ,Bottleneck - Abstract
For the synthesis of correct-by-construction control policies from temporal logic specifications the scalability of the synthesis algorithms is often a bottleneck. In this paper, we parallelize synthesis from specifications in the GR(1) fragment of linear temporal logic by introducing a hierarchical procedure that allows decoupling of the fixpoint computations. The state space is partitioned into equicontrollable sets using solutions to parametrized games that arise from decomposing the original GR(1) game into smaller reachability-persistence games. Following the partitioning, another synthesis problem is formulated for composing the strategies from the decomposed reachability games. The formulation guarantees that composing the synthesized controllers ensures satisfaction of the given GR(1) property. Experiments with robot planning problems demonstrate good performance of the approach.
- Published
- 2019
25. Greedy low-rank algorithm for spatial connectome regression
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Patrick Kürschner, Kameron Decker Harris, Sergey Dolgov, and Peter Benner
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Mathematics, Interdisciplinary Applications ,Speedup ,Rank (linear algebra) ,Computer science ,Neuroscience (miscellaneous) ,Low-rank approximation ,010103 numerical & computational mathematics ,Tracing ,01 natural sciences ,Bottleneck ,lcsh:RC321-571 ,03 medical and health sciences ,FOS: Mathematics ,Matrix equations ,Mathematics - Numerical Analysis ,0101 mathematics ,OPTIMIZATION ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,030304 developmental biology ,0303 health sciences ,Sequence ,Science & Technology ,Quantitative Biology::Neurons and Cognition ,lcsh:Mathematics ,Research ,Neurosciences ,Numerical Analysis (math.NA) ,lcsh:QA1-939 ,15A24, 15A83, 65F10 92C20, 94A08 ,KRYLOV SUBSPACE METHODS ,Computational neuroscience ,Physical Sciences ,Connectome ,Mathematical & Computational Biology ,Neurosciences & Neurology ,Computational problem ,Networks ,Algorithm ,Life Sciences & Biomedicine ,MATRIX ,Mathematics - Abstract
Recovering brain connectivity from tract tracing data is an important computational problem in the neurosciences. Mesoscopic connectome reconstruction was previously formulated as a structured matrix regression problem (Harris et al. in Neural Information Processing Systems, 2016), but existing techniques do not scale to the whole-brain setting. The corresponding matrix equation is challenging to solve due to large scale, ill-conditioning, and a general form that lacks a convergent splitting. We propose a greedy low-rank algorithm for the connectome reconstruction problem in very high dimensions. The algorithm approximates the solution by a sequence of rank-one updates which exploit the sparse and positive definite problem structure. This algorithm was described previously (Kressner and Sirković in Numer Lin Alg Appl 22(3):564–583, 2015) but never implemented for this connectome problem, leading to a number of challenges. We have had to design judicious stopping criteria and employ efficient solvers for the three main sub-problems of the algorithm, including an efficient GPU implementation that alleviates the main bottleneck for large datasets. The performance of the method is evaluated on three examples: an artificial “toy” dataset and two whole-cortex instances using data from the Allen Mouse Brain Connectivity Atlas. We find that the method is significantly faster than previous methods and that moderate ranks offer a good approximation. This speedup allows for the estimation of increasingly large-scale connectomes across taxa as these data become available from tracing experiments. The data and code are available online. ispartof: Journal Of Mathematical Neuroscience vol:9 issue:1 ispartof: location:Germany status: Published online
- Published
- 2019
26. A fuzzy neural network based dynamic data allocation\ud model on heterogeneous multi-GPUs for large-scale\ud computations
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Zhijie Xu, Jing Wang, Jianhua Adu, Jia He, Yuanping Xu, and Chaolong Zhang
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Discrete wavelet transform ,0209 industrial biotechnology ,Artificial neural network ,Computer science ,Computer Applications ,Applied Mathematics ,Dynamic data ,Distributed computing ,Graphics processing unit ,02 engineering and technology ,Load balancing (computing) ,Bottleneck ,Computer Science Applications ,Runtime system ,020901 industrial engineering & automation ,Control and Systems Engineering ,Modeling and Simulation ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing - Abstract
The parallel computation capabilities of modern GPU (Graphics Processing Unit) processors have attracted increasing attention from researchers and engineers who have been conducting high computational throughput studies. However, current single GPU based engineering solutions are often struggle to fulfill their real-time requirements. Thus, the multi-GPU-based approach has become a popular and cost-effective choice for tackling the demands. In those cases, the computational load balancing over multiple GPU “nodes” is often the key and bottleneck that affect the quality and performance of the runtime system. The existing load balancing approaches are mainly based on the assumption that all GPU nodes in the same computer framework are of equal computational performance, which are often not the case due to cluster design and other legacy issues. This paper presents a novel dynamic load balancing (DLB) model for rapid data division and allocation on heterogeneous GPU nodes based on an innovative fuzzy neural network (FNN). In this research, a 5-state parameter feedback mechanism defining the overall cluster and node performances is proposed. The corresponding FNN-based DLB model will be capable of monitoring and predicting individual node performance under different workload scenarios. A real-time adaptive scheduler has been devised to reorganize the data inputs to each node when necessary to maintain their runtime computational performances. The devised model has been implemented on two dimensional (2D) discrete wavelet transform (DWT) tasks for evaluation. Experiment results show that this DLB model has enabled a high computational throughput while ensuring real-time and precision requirements from complex computational tasks.
- Published
- 2018
27. HyMPRo: a hybrid multi-path routing algorithm for cognitive radio ad hoc networks
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Tuğrul Çavdar, Erkan Guler, and Belirlenecek
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Ad hoc networks ,business.industry ,Wireless ad hoc network ,Network packet ,Computer science ,Cognitive radio ,020208 electrical & electronic engineering ,020206 networking & telecommunications ,Throughput ,02 engineering and technology ,Route stability ,Bottleneck ,Hybrid routing ,Path diversity ,Congestion awareness ,Path (graph theory) ,0202 electrical engineering, electronic engineering, information engineering ,Electrical and Electronic Engineering ,Routing (electronic design automation) ,business ,Computer network - Abstract
WOS: 000439979700005 Routing is one of the major challenges in cognitive radio ad hoc networks. In finding new routes, not only the less impacted paths due the primary user activity, but also bottleneck formations over time in the secondary network and multiple connections initiated by the secondary users are important issues to be investigated. Besides, route search confined to a small fraction of all possible paths can lead to miss the appropriate one. This paper introduces a hybrid method employing three atomic metrics related to route stability, congestion awareness and path diversity based on active connections. Also, the number of alternative paths is kept on a limited scale which avoids the emergence of excessive traffic load in the network. The simulation results demonstrate the effectiveness of the proposed approach in terms of packet delivery ratio, end-to-end delay and throughput. It is also shown that the performance of our routing mechanism outperforms the existing baseline schemes.
- Published
- 2018
28. Evolutionary history of the kelp gull (Larus dominicanus) at the south hemisphere supported by multilocus evidence
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João Stenghel Morgante, Ana Millones, Martin Sander, Esteban Frere, Juliana A. Vianna, Gisele P. M. Dantas, and Fernanda de Almeida Santos
- Subjects
0106 biological sciences ,0301 basic medicine ,Population ,Kelp ,MICROSATELLITES ,Zoology ,010603 evolutionary biology ,01 natural sciences ,Ciencias Biológicas ,03 medical and health sciences ,Genética y Herencia ,Larus dominicanus ,Genetic variability ,education ,Isolation by distance ,education.field_of_study ,Genetic diversity ,biology ,Ecology ,POPULATION EXPANSION ,biology.organism_classification ,030104 developmental biology ,KELP GULL ,embryonic structures ,Genetic structure ,BOTTLENECK ,Biological dispersal ,BIOGEOGRAFIA ,CIENCIAS NATURALES Y EXACTAS - Abstract
The high dispersal ability of seabirds and theabsence of geographical barriers has led to high gene flowand reduced population differentiation. Nevertheless, somespecies with philopatric behavior have restricted gene flowamong colonies, revealing a strong population structure.Gulls show widespread colonial behavior, and are longlivedspecies, which make them a good model for understandingevolutionary processes in seabirds. Previousgenetic studies on the Kelp Gull (Larus dominicanus) haverevealed low genetic variability in mitochondrial markersbut relatively high genetic variation in a nuclear marker.These observations can be explained by the occurrence of aselective sweep on mtDNA, population genetic bottlenecksor a recent origin of the species. We used microsatellitedata to further investigate these hypotheses, mainly bytesting for bottleneck events. Low genetic variability(Ho = 0.276?0.570) was detected in Kelp Gulls. However,population genetic structure was observed among regions(Chile, Argentina and Brazil), and between continents(South America and Antarctica). The population of theKelp Gull in South America may have differentiated due toisolation by distance (r = 0.7273, p = 0.0013), whereasthe population in the Antarctic seems to be isolated by nonphysicalbarriers. Bottleneck events were detected in 6 outof 14 colonies studied. These colonies are at the limits ofthe distribution of the Kelp Gull, and thus experience harshsurvival conditions. We believe that the Kelp Gull has acomplex history in the southern hemisphere, with a recentorigin, followed by bottlenecks and then population expansion. Thus, the genetic diversity found in Kelp Gull issimilar to that observed for other species of Laridae. Fil: de Almeida Santos, Fernanda. Universidade de Sao Paulo; Brasil Fil: Stenghel Morgante, João. Universidade de Sao Paulo; Brasil Fil: Frere, Esteban. Universidad Nacional de la Patagonia Austral; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Millones, Ana. Universidad Nacional de la Patagonia Austral; Argentina Fil: Sander, Martin. Universidad de Vale do Rio dos Sinos; Brasil Fil: de Abreu Vianna, Juliana. Pontificia Universidad Católica de Chile; Chile Fil: Pires de Mendonça Dantas, Gisele. Universidade de Sao Paulo; Brasil. Pontificia Universidade Catolica de Minas Gerais.; Brasil
- Published
- 2016
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29. Trends of autumn counts at Iberian migration bottlenecks as a tool for monitoring continental populations of soaring birds in Europe
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Andrés de la Cruz, Miguel Ferrer, Alejandro Onrubia, Beatriz Martín, and Junta de Andalucía
- Subjects
0106 biological sciences ,Storks ,Population ,Organbidexka ,Biodiversity ,010603 evolutionary biology ,01 natural sciences ,Bottleneck ,010605 ornithology ,biology.animal ,Flyway ,education ,Global change ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,education.field_of_study ,Ecology ,biology ,Raptors ,Strait of Gibraltar ,Population size ,Buzzard ,Fishery ,Geography ,Period (geology) - Abstract
Migration monitoring may allow us to detect population trends over large geographic areas because the pattern of change in migrant counts may be expected to follow the pattern of change in population size. We analysed recent regional European population trends of migratory soaring birds from rates of change in migration counts over the Strait of Gibraltar (Spain) during the years (1999–2013). An additional bottleneck (Organbidexka, France) within the same migratory route and period was also considered. We estimated count trends by fitting a log-generalized linear model to the time series of each species counts. The counts in Organbidexka were used to test the consistency in the observed trends over the Strait of Gibraltar. Migration counts of White and Black Storks, Black Kites, Short-toed and Booted Eagles as well as Egyptian Vultures showed a linear increase over the Strait of Gibraltar throughout the 15-year period. In contrast, Honey Buzzard numbers remained stable. Trends were highly consistent with those recorded in Organbidexka. We suggest that the larger slopes for the trends in Organbidexka when compared with the Strait reflect an increasing tendency in these species to overwinter in southern Europe. A combination of complementary data sets collected at different bottleneck sites within the European–African flyway system may become a fundamental tool for the investigation of migratory patterns and population trends and changes of soaring migrant birds all over Europe.https://doi.org/10.1007/s10531-016-1047-4, The data counts from the Strait of Gibraltar analyzed in the study were collected in field monitoring campaigns 1999/2012 funded by grants of the Consejeria de Medio Ambiente of the Junta de Andalucía (Spain)
- Published
- 2016
30. Congestion games with mixed objectives
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Feldotto, Matthias, Leder, Lennart, Skopalik, Alexander, Chan, T-H. Hubert, Li, Minming, and Wang, Lusheng
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TheoryofComputation_MISCELLANEOUS ,Computer Science::Computer Science and Game Theory ,Pure Nash equilibrium ,ComputingMilieux_PERSONALCOMPUTING ,TheoryofComputation_GENERAL ,Existence ,Complexity ,Congestion games ,Convergence ,Approximation ,Bottleneck congestion games - Abstract
We study a new class of games which generalizes congestion games and its bottleneck variant. We introduce congestion games with mixed objectives to model network scenarios in which players seek to optimize for latency and bandwidths alike. We characterize the existence of pure Nash equilibria (PNE) and the convergence of improvement dynamics. For games that do not possess PNE we give bounds on the approximation ratio of approximate pure Nash equilibria.
- Published
- 2017
31. GA3: scalable, distributed address assignment for dynamic data center networks
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Jose M. Arco, Elisa Rojas, Isaias Martinez-Yelmo, Juan A. Carral, Joaquin Alvarez-Horcajo, and Universidad de Alcalá. Departamento de Automática
- Subjects
Routing protocol ,Ethernet ,Alias ,Computer science ,Distributed computing ,02 engineering and technology ,Network topology ,Bottleneck ,03 medical and health sciences ,0302 clinical medicine ,Robustness (computer science) ,Automatic address assignment ,0202 electrical engineering, electronic engineering, information engineering ,Shortest path bridges ,Data centers ,Electrical and Electronic Engineering ,Informática ,business.industry ,Dynamic data ,020206 networking & telecommunications ,030220 oncology & carcinogenesis ,Shortest path problem ,business ,Misconfiguration detection ,Computer network - Abstract
Deployment and maintenance of current data center networks is costly and prone to errors. In order to avoid manual configuration, many of them require centralized administrators which constitute a clear bottleneck, while distributed approaches do not guarantee sufficient flexibility or robustness. This paper describes and evaluates GA3 (Generalized Automatic Address Assignment), a discovery protocol that assigns multiple unique labels to all the switches in a hierarchical network, without any modification of hosts or the standard Ethernet frames. Labeling is distributed and uses probes. These labels can be leveraged for shortest path routing without tables, as in the case of the Torii protocol, but GA3 also allows other label-based routing protocols (such as PortLand or ALIAS). Additionally, GA3 can detect miswirings in the network. Furthermore, control traffic is only necessary upon network deployment rather than periodically. Simulation results showed a reduced convergence time of less than 2 s and 100 kB/s of bandwidth (to send the GA3 frames) in the worst case for popular data center topologies, which outperforms other similar protocols., Comunidad de Madrid
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- 2017
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32. Wastewater treatment using microalgae: how realistic a contribution might it be to significant urban wastewater treatment?
- Author
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F. Gabriel Acién, José M. Fernández-Sevilla, Emilio Molina-Grima, Cintia Gómez-Serrano, and Maria del Mar Morales-Amaral
- Subjects
0208 environmental biotechnology ,Biomass ,02 engineering and technology ,010501 environmental sciences ,Wastewater ,01 natural sciences ,Applied Microbiology and Biotechnology ,Waste Disposal, Fluid ,Bottleneck ,Water Purification ,Photobioreactors ,microalgae, wastewater, nutrient recovery, photosynthetic efficiency, photobioreactors ,Microalgae ,Photosynthesis ,Robustness (economics) ,Biotransformation ,0105 earth and related environmental sciences ,Pollutant ,business.industry ,Heavy metals ,General Medicine ,020801 environmental engineering ,Biotechnology ,Metabolic Engineering ,Environmental science ,Sewage treatment ,Profitability index ,Biochemical engineering ,business ,Water Pollutants, Chemical - Abstract
Microalgae have been proposed as an option for wastewater treatment since the 1960s, but still, this technology has not been expanded to an industrial scale. In this paper, the major factors limiting the performance of these systems are analysed. The composition of the wastewater is highly relevant, and especially the presence of pollutants such as heavy metals and emerging compounds. Biological and engineering aspects are also critical and have to be improved to at least approximate the performance of conventional systems, not just in terms of capacity and efficiency but also in terms of robustness. Finally, the harvesting of the biomass and its processing into valuable products pose a challenge; yet at the same time, an opportunity exists to increase economic profitability. Land requirement is a major bottleneck that can be ameliorated by improving the system’s photosynthetic efficiency. Land requirement has a significant impact on the economic balance, but the profits from the biomass produced can enhance these systems’ reliability, especially in small cities.
- Published
- 2016
33. Signatures of demographic bottlenecks in European wolf populations
- Author
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Olga Francino, Maria Salinas, Carles Vilà, Armand Sánchez, Natalia Sastre, Vicente Urios, Oscar Ramirez, and Vladimir V. Bologov
- Subjects
education.field_of_study ,Genetic diversity ,Y chromosome ,Ecology ,mtDNA ,Population size ,Population ,Small population size ,Biology ,humanities ,Bottleneck ,Canis lupus ,Population decline ,Effective population size ,Population bottleneck ,Evolutionary biology ,Genetics ,Autosomal microsatellites ,European wolf ,Neutrality ,education ,Ecology, Evolution, Behavior and Systematics - Abstract
12 páginas, 4 figuras, 4 tablas.-- et al., Monitoring the loss of genetic diversity in wild populations after a bottleneck event is a priority in conservation and management plans. Here, we used diverse molecular markers to search for signatures of demographic bottlenecks in two wolf populations; an isolated population from the Iberian Peninsula and a non-isolated population from European Russia. Autosomal, mtDNA and Y-chromosomal diversity and the effective population size (Ne) were significantly lower in the Iberian population. Neutrality tests using mtDNA sequences, such as R2, Fu and Li’s F*, Tajima’s D and Fu’s Fs, were positively significant in the Iberian population, suggesting a population decline, but were not significant for the Russian population, likely due to its larger effective population size. However, three tests using autosomal data confirmed the occurrence of the genetic bottleneck in both populations. The M-ratio test was the only one providing significant results for both populations. Given the lack of consistency among the different tests, we recommend using multiple approaches to investigate possible past bottlenecks. The small effective population size (about 50) in the Iberian Peninsula compared to the presumed extant population size could indicate that the bottleneck was more powerful than initially suspected or an overestimation of the current population. The risks associated with small effective population sizes suggest that the genetic change in this population should be closely monitored in the future. On the other hand, the relatively small effective population size for Russian wolves (a few hundred individuals) could indicate some fragmentation, contrary to what is commonly assumed., Carles Vilà work was supported by the ‘‘Programa para la Captación del Conocimiento para Andalucía’’ (Andalusian Government, Spain). Financial support was provided by the ‘‘Servei Veterinari de Genètica Molecular’’ (SVGM).
- Published
- 2011
34. Pipeless Batch Plant with Operating Robots for a Multiproduct Production System
- Author
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Satoshi Hoshino, Hiroya Seki, and Yuji Naka
- Subjects
Flexibility (engineering) ,Task (computing) ,Coupling (computer programming) ,Computer science ,Process (engineering) ,Control (management) ,Robot ,Production (economics) ,Control engineering ,Industrial engineering ,Bottleneck - Abstract
Chemical process industries need to be able to adapt to the fast changing market to meet consumer demands. A pipeless batch plant with multiple operating robots for a high-mix and low-volume production system which has more flexibility and agility is developed in this paper. For more efficient use of the plant resources, such as movable vessel robots, coupling robots, and production tasks, operational models for a vessel route planning, coupling robot operation dispatching, and task assignment are proposed as an integrated control methodology. Finally, the effectiveness of the operational models for the pipeless batch plant system is discussed and shown through the simulation experiment. Furthermore, a system bottleneck is analyzed for more effective plant system.
- Published
- 2008
35. Integrating a Stream Processing Engine and Databases for Persistent Streaming Data Management
- Author
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Toshiyuki Amagasa, Shinichi Yamada, Yousuke Watanabe, and Hiroyuki Kitagawa
- Subjects
Stream processing ,Query plan ,Data stream clustering ,Data stream management system ,Database ,Computer science ,Data stream mining ,InformationSystems_DATABASEMANAGEMENT ,Sargable ,computer.software_genre ,Query language ,computer ,Bottleneck - Abstract
Because of increased stream data, managing stream data has become quite important. This paper describes our data stream management system, which employs an architecture combining a stream processing engine and DBMS. Based on the architecture, the system processes both continuous queries and traditional one-shot queries. Our proposed query language supports not only filtering, join, and projection over data streams, but also continuous persistence requirements for stream data. Users can also specify continuous queries that integrate streaming data and historical data stored in DBMS. Another contribution of this paper is feasibility validation of queries. Processing queries on streams with frequent inputs may cause the system to overflow its capacity. Specifically, the maximum writing rate to DBMS is a significant bottleneck when we try to store stream data into DBMS. Our system detects infeasible queries in advance.
- Published
- 2007
36. Adaptive Zoning for Efficient Transport Modelling in Urban Models
- Author
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Alex Hagen-Zanker, Ying Jin, Gervasi, O, Murgante, B, Misra, S, Gavrilova, ML, Alves Coutinho Rocha, AM, Torre, C, Taniar, D, and Abduhan, BO
- Subjects
Mathematical optimization ,Hierarchy (mathematics) ,Computer science ,Function (mathematics) ,Zoning ,Representation (mathematics) ,Bottleneck - Abstract
Transport modelling and in particular transport assignment is a well-known bottleneck in computation cost and time for urban system models. The use of Transport Analysis Zones (TAZ) implies a trade-off between computation time and accuracy: practical computational constraints can lead to concessions to zone size with severe repercussions for the quality of the transport representation in urban models. This paper investigates how a recently developed geographical topology called adaptive zoning can be used to obtain more favorable trade-offs between computational cost and accuracy than traditional TAZ. Adaptive zoning was developed specifically for representing spatial interactions; it makes use of a nested zone hierarchy to adapt the model resolution as a function of both the origin and destination location. In this paper the adaptive zoning method is tied to an approach to trip assignment that uses high spatial accuracy (small zones) at one end of the route and low spatial accuracy (large zones) at the other end of the route. Opportunistic use of either the first or second half of such routes with asymmetric accuracy profiles leads to a method of transport assignment that is more accurate than traditional TAZ based assignment at reduced computational cost. The method is tested and demonstrated on the well-known Chicago Regional test problem. Compared with an assignment using traditional zoning, an adaptive-zoning-based assignment that uses the same computation time reduces the bias in travel time by a factor 16 and link level traffic volume RMSE by a factor 6.4.
- Published
- 2015
37. Resources beyond content for open education
- Author
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Erik Duval, Joris Klerkx, Victor Alvarez, Frans Andre Van Assche, and Douglas Armendone
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Open education ,Knowledge management ,Proof of concept ,business.industry ,Political science ,Validator ,Scale (social sciences) ,Interoperability ,Library science ,business ,Information provision ,Bottleneck - Abstract
© The Editor(s) (if applicable) and the Author(s) 2015. While many innovations in Technology Enhanced Learning (TEL) have emerged over the last two decades, the uptake of these innovations has not always been very successful, particularly in schools. The transition from proof of concept to integration into learning activities has been recognized as a bottleneck for quite some time. This major problem, which is affecting many TEL stakeholders, is the focus of the 4-year iTEC project that is developing a comprehensive approach involving 15 ministries of education and is organizing a large scale validator with more than a thousand classrooms. This chapter reports on how the information provision on events of interest in learning as well as on persons that can contribute to learning activities, supports novel scenarios and is key for the introduction of open education in the K12 education. ispartof: Re-engineering the Uptake of ICT in Schools pages:115-139 ispartof: pages:115-139 status: published
- Published
- 2015
38. Efficient Selection of Time Samples for Higher-Order DPA with Projection Pursuits
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Yves Deville, Nicolas Veyrat-Charvillon, Jean-Baptiste Mairy, François Durvaux, François-Xavier Standaert, and UCL - SST/ICTM/ELEN - Pôle en ingénierie électrique
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Black box (phreaking) ,Theoretical computer science ,Exploit ,Computer science ,business.industry ,Projection pursuit ,Local search (optimization) ,Context (language use) ,Implementations ,business ,Projection (set theory) ,Time complexity ,Bottleneck - Abstract
The selection of points-of-interest in leakage traces is a frequently neglected problem in the side-channel literature. However, it can become the bottleneck of practical adversaries/evaluators as the size of the measurement traces increases, especially in the challenging context of masked implementations, where only a combination of multiple shares reveals information in higher-order statistical moments. In this paper, we describe new black box tools for efficiently dealing with this problem. The proposed techniques exploit projection pursuits and specialized local search algorithms, work with minimum memory requirements and practical time complexity. We validate them with two case-studies of unprotected and first-order masked implementations in an 8-bit device, the latter one being hard to analyze with previously known methods.
- Published
- 2015
39. An adaptive resource control mechanism in multi-hop ad-hoc networks
- Author
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Yang, Y., Heijenk, Geert, Haverkort, Boudewijn R.H.M., Masip Bruin, Xavier, Verchere, Dominique, Tsaoussidis, Vassilis, and Yannuzzi, Marcelo
- Subjects
EWI-20296 ,Dynamic network analysis ,Computer science ,business.industry ,Wireless ad hoc network ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,Transmission opportunity ,Bottleneck ,Hop (networking) ,Traffic balancing ,Resource control – multi-hop – 802.11 – RTS/CTS – TXOP ,IR-77618 ,Control system ,METIS-278727 ,Traffic load ,business ,Computer network - Abstract
This paper presents an adaptive resource control mechanism for multi-hop ad-hoc network systems, which avoids bottleneck problems caused by the node-fairness property of IEEE 802.11. In our proposal, the feedback information from the downstream bottleneck, derived from Request-To-Send (RTS) and Clear-To-Send (CTS) messages is utilized to control the Transmission Opportunity (TXOP) limit of the upstream nodes for traffic balancing. The proposed mechanism is modelled control-theoretically using the 20-sim control system modelling tool, which has the advantage that results can be obtained in a fast and efficient way. Compared to systems without resource control, a higher throughput and lower delay can be achieved under a variety of traffic load conditions as well as in dynamic network environments.
- Published
- 2011
40. Setting the parameters right for two-hop IEEE 802.11e ad hoc networks
- Author
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Remke, Anne Katharina Ingrid, Haverkort, Boudewijn R.H.M., Heijenk, Geert, Bax, Jesper, Müller-Clostermann, Bruno, Echtle, Klaus, and Rathgeb, Erwin P.
- Subjects
IEEE 802 ,Markov chain ,business.industry ,Computer science ,Design space exploration ,Wireless ad hoc network ,020206 networking & telecommunications ,02 engineering and technology ,Topology ,Preferential treatment ,IR-72834 ,Bottleneck ,Hop (networking) ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,EWI-16467 ,METIS-270695 ,business ,Queue ,Computer network - Abstract
Two-hop ad-hoc networks, in which some nodes forward traffic for multiple sources, with which they also compete for channel access suffer from large queues building up in bottleneck nodes. This problem can often be alleviated by using IEEE 802.11e to give preferential treatment to bottleneck nodes. Previous results have shown that differentiation parameters can be used to allocate capacity in a more efficient way in the two-hop scenario. However, the overall throughput of the bottleneck may differ considerably, depending on the differentiation method used. By applying a very fast and accurate analysis method, based on steady-state analysis of an QBD-type infinite Markov chain, we find the maximum throughput that is possible per differentiation parameter. All possible parameter settings are explored with respect to the maximum throughput conditioned on a maximum buffer occupancy. This design space exploration cannot be done with network simulators like NS2 or Opnet, as each simulation run simply takes to long. The results, which have been validated by detailed simulations, show that by differentiating TXOP it is possible to achieve a throughput that is about 50% larger than when differentiating AIFS and $\text{CW}_{\text{min}}$.
- Published
- 2010
41. Structural Properties as Proxy for Semantic Relevance in RDF Graph Sampling
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Rietveld, L., Hoekstra, R., Schlobach, S., Guéret, C., Mika, P., Tudorache, T., Bernstein, A., Welty, C., Knoblock, C., Vrandečić, D., Groth, P., Noy, N., Janowicz, K., Goble, C., Information and Language Processing Syst (IVI, FNWI), and Leibniz (FdR)
- Subjects
Power graph analysis ,sampling ,Information retrieval ,business.industry ,Computer science ,Sampling (statistics) ,subgraphs ,computer.file_format ,Linked data ,Graph ,Bottleneck ,graph analysis ,Knowledge base ,Ranking ,ranking ,Linked Data ,SPARQL ,Graph (abstract data type) ,RDF ,business ,computer - Abstract
The Linked Data cloud has grown to become the largest knowledge base ever constructed. Its size is now turning into a major bottleneck for many applications. In order to facilitate access to this structured information, this paper proposes an automatic sampling method targeted at maximizing answer coverage for applications using SPARQL querying. The approach presented in this paper is novel: no similar RDF sampling approach exist. Additionally, the concept of creating a sample aimed at maximizing SPARQL answer coverage, is unique. We empirically show that the relevance of triples for sampling (a semantic notion) is influenced by the topology of the graph (purely structural), and can be determined without prior knowledge of the queries. Experiments show a significantly higher recall of topology based sampling methods over ran- dom and naive baseline approaches (e.g. up to 90% for Open-BioMed at a sample size of 6%).
- Published
- 2014
42. Evidence for selection maintaining MHC diversity in a rodent species despite strong density fluctuations
- Author
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Andrea C. Schuster, Antje Herde, Camila J. Mazzoni, Simone Sommer, and Jana A. Eccard
- Subjects
0106 biological sciences ,0301 basic medicine ,Immunology ,Population ,Major histocompatibility complex ,010603 evolutionary biology ,01 natural sciences ,Major Histocompatibility Complex ,03 medical and health sciences ,Genetic drift ,Gene Frequency ,Genetic variation ,Genetics ,Animals ,Allele ,Selection, Genetic ,education ,Allele frequency ,Phylogeny ,Institut für Biochemie und Biologie ,education.field_of_study ,Genetic diversity ,biology ,Arvicolinae ,Genetic Drift ,Genetic Variation ,030104 developmental biology ,Population bottleneck ,Genetics, Population ,biology.protein - Abstract
Strong spatiotemporal variation in population size often leads to reduced genetic diversity limiting the adaptive potential of individual populations. Key genes of adaptive variation are encoded by the immune genes of the major histocompatibility complex (MHC) playing an essential role in parasite resistance. How MHC variation persists in rodent populations that regularly experience population bottlenecks remains an important topic in evolutionary genetics. We analysed the consequences of strong population fluctuations on MHC class II DRB exon 2 diversity in two distant common vole (Microtus arvalis) populations in three consecutive years using a high-throughput sequencing approach. In 143 individuals, we detected 25 nucleotide alleles translating into 14 unique amino acid MHC alleles belonging to at least three loci. Thus, the overall allelic diversity and amino acid distance among the remaining MHC alleles, used as a surrogate for the range of pathogenic antigens that can be presented to T-cells, are still remarkably high. Both study populations did not show significant population differentiation between years, but significant differences were found between sites. We concluded that selection processes seem to be strong enough to maintain moderate levels of MHC diversity in our study populations outcompeting genetic drift, as the same MHC alleles were conserved between years. Differences in allele frequencies between populations might be the outcome of different local parasite pressures and/or genetic drift. Further understanding of how pathogens vary across space and time will be crucial to further elucidate the mechanisms maintaining MHC diversity in cyclic populations.
- Published
- 2016
43. Fluid-flow modeling of a relay node in an IEEE 802.11 wireless ad-hoc network
- Author
-
Roijers, F., van den Berg, H., Mandjes, M., Mason, L., Drwiega, T., Yan, J., TNO Informatie- en Communicatietechnologie, Stochastics (KDV, FNWI), and Design and Analysis of Communication Systems
- Subjects
Standards ,Ad hoc networks ,Transfer time ,Inter-Access Point Protocol ,Wireless ad hoc network ,Computer science ,Packet networks ,Distributed computing ,Source node ,Shared medium ,Bottleneck ,law.invention ,IEEE 802.11 ,Relay ,law ,Computer Science::Networking and Internet Architecture ,Wireless ,Mathematical models ,Flow transfer ,business.industry ,Node (networking) ,Resource sharing ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,Medium access control ,Network allocation vector ,Computer simulation ,Shared resource ,Queueing networks ,Relay node ,Fluid-flow modeling ,business ,Computer network - Abstract
Wireless ad-hoc networks are based on shared medium technology where the nodes arrange access to the medium in a distributed way independent of their current traffic demand. This has the inherent drawback that a node that serves as a relay node for transmissions of multiple neighboring nodes is prone to become a performance "bottleneck". In the present paper such a bottleneck node is modeled via an idealized fluid-flow queueing model in which the complex packet-level behavior (MAC) is represented by a small set of parameters. We extensively validate the model by ad-hoc network simulations that include all the details of the widely used IEEE 802.11 MAC-protocol. Further we show that the overall flow transfer time of a multi-hop flow, which consists of the sum of the delays at the individual nodes, improves by granting a larger share of the medium capacity to the bottleneck node. Such alternative resource sharing strategies can be enforced in real systems by deploying the recently standardized IEEE 802.HE MAC-protocol. We propose a mapping between the parameter settings of IEEE 802. HE and the fluid-flow model, and validate the fluid-flow model and the parameter mapping with detailed system simulations. © Springer-Verlag Berlin Heidelberg 2007.
- Published
- 2007
44. Visually-guided robot navigation: From artificial to natural landmarks
- Author
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Celaya, Enric, Albarral García, José Luís, Jiménez Schlegl, Pablo, Torras, Carme, Ministerio de Ciencia y Tecnología (España), European Commission, Institut de Robòtica i Informàtica Industrial, Institut de Robòtica i Informàtica Industrial (IRI), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC)-Universitat Politècnica de Catalunya [Barcelona] (UPC), Universitat Politècnica de Catalunya. KRD - Cinemàtica i Disseny de Robots, Universitat Politècnica de Catalunya. ROBiri - Grup de Robòtica de l'IRI, and Documentation, Inria Rhône-Alpes
- Subjects
0209 industrial biotechnology ,Informàtica::Automàtica i control [Àrees temàtiques de la UPC] ,Computer science ,Navigation task ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,02 engineering and technology ,Bottleneck ,Automation ,020901 industrial engineering & automation ,0202 electrical engineering, electronic engineering, information engineering ,Turn-by-turn navigation ,[INFO.INFO-RB]Computer Science [cs]/Robotics [cs.RO] ,Computer vision ,Legged robot ,Automatització ,Landmark ,business.industry ,Salient region ,ACM: I.: Computing Methodologies/I.2: ARTIFICIAL INTELLIGENCE/I.2.9: Robotics ,[INFO.INFO-RB] Computer Science [cs]/Robotics [cs.RO] ,Navigation system ,Mobile robot navigation ,Salient ,Robot ,Input pixel ,020201 artificial intelligence & image processing ,Artificial intelligence ,Automation [Classificació INSPEC] ,Mahalanobis distance ,Legged tobot ,business - Abstract
Presentado a la 6th International Conference on Field and Service Robotics (FSR) celebrada en 2007 en Chamonix (Francia)., Landmark-based navigation in unknown unstructured environments is far from solved. The bottleneck nowadays seems to be the fast detection of reliable visual references in the image stream as the robot moves. In our research, we have decoupled the navigation issues from this visual bottleneck, by first using artificial landmarks that could be easily detected and identified. Once we had a navigation system working, we developed a strategy to detect and track salient regions along image streams by just performing on-line pixel sampling. This strategy continuously updates the mean and covariances of the salient regions, as well as creates, deletes and merges regions according to the sample flow. Regions detected as salient can be considered as potential landmarks to be used in the navigation task., This work was supported by projects: 'Sistema reconfigurable para la navegación basada en visión de robots caminantes y rodantes en entornos naturales.' (00), 'Perception, action & cognition through learning of object-action complexes.' (4915)., This work has been supported by the Spanish Ministerio de Ciencia y Tecnología and FEDER under the project SIRVENT (DPI2003-05193-C02-01), as well as the European Union under the project PACO-PLUS (FP6-2004-IST-4-27657).
- Published
- 2007
45. Exploration of Distributed Automotive Systems using Compositional Timing Analysis
- Author
-
Samarjit Chakraborty, Martin Lukasiewycz, Michael Glaß, and Jürgen Teich
- Subjects
Engineering ,business.industry ,Design space exploration ,Distributed computing ,Real-time computing ,Automotive industry ,Static timing analysis ,Bottleneck ,Scheduling (computing) ,ddc ,Design objective ,Systems design ,business ,Cluster analysis - Abstract
This chapter presents a design space exploration method for mixed event-triggered and time-triggered real-time systems in the automotive domain. A design space exploration model is used that is capable of modeling and optimizing state-of-the-art automotive systems including the resource allocation, task distribution, message routing, and scheduling. The optimization is based on a heuristic approach that iteratively improves the system design. Within this iterative optimization it is necessary to analyze each system design where one of the major design objectives that needs to be evaluated is the timing behavior. Since timing analysis is a very complex design task with high computational demands, it might become a bottleneck within the design space exploration. As a remedy, a clustering strategy is presented that is capable of reducing the complexity and minimizing the runtime of the timing analysis. A case study gives evidence of the efficiency of the proposed approach.
- Published
- 2013
46. Multi-objective constraint optimization with tradeoffs
- Author
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Radu Marinescu, Abdul Razak, Nic Wilson, and Schulte, Christian
- Subjects
Random graph ,Mathematical optimization ,Discrete mathematics in computer science ,Computer science ,Algorithm analysis and problem complexity ,Constrained optimization ,Programming languages, compilers, interpreters ,Context (language use) ,Multi-objective optimization ,Upper and lower bounds ,Bottleneck ,Search tree ,Logics and meanings of programs ,Node (circuits) ,Multi-objective Constraint Optimization (MOCOP) ,Numeric computing ,Preference relation ,Algorithm ,Mathematical logic and formal languages - Abstract
In this paper, we consider the extension of multi-objective constraint optimization algorithms to the case where there are additional tradeoffs, reducing the number of optimal solutions. We focus especially on branch-and-bound algorithms which use a mini-buckets algorithm for generating the upper bound at each node (in the context of maximizing values of objectives). Since the main bottleneck of these algorithms is the very large size of the guiding upper bound sets we introduce efficient methods for reducing these sets, yet still maintaining the upper bound property. We also propose much faster dominance checks with respect to the preference relation induced by the tradeoffs. Furthermore, we show that our tradeoffs approach which is based on a preference inference technique can also be given an alternative semantics based on the well known Multi-Attribute Utility Theory. Our comprehensive experimental results on common multi-objective constraint optimization benchmarks demonstrate that the proposed enhancements allow the algorithms to scale up to much larger problems than before.
- Published
- 2013
47. Automated Inference of Models for Black Box Systems based on Interface Descriptions
- Author
-
Massimo Tivoli, Falk Howar, Maik Merten, Patrizio Pellicione, and Bernhard Steffen
- Subjects
Black box (phreaking) ,Parsing ,Programming language ,Interface (Java) ,Computer science ,Inference ,computer.software_genre ,Web Services Description Language ,computer ,Bridge (nautical) ,Bottleneck ,Behavioral modeling - Abstract
In this paper we present a method and tool to fully automatically infer data-sensitive behavioral models of black-box systems in two coordinated steps: (1) syntactical analysis of the interface descriptions, here given in terms of WSDL (Web Services Description Language), for instantiating test harnesses with adequate mappers, i.e., means to bridge between the model level and the concrete execution level, and (2) test-based exploration of the target system by means of active automata learning. The first step is realized by means of the syntactic analysis of StrawBerry , a tool designed for syntactically analyzing WSDL descriptions, and the second step by the LearnLib , a flexible active automata learning framework. The new method presented in this paper (1) overcomes the manual construction of the mapper required for the learning tool, a major practical bottleneck in practice, and (2) provides global behavioral models that comprise the data-flow of the analyzed systems. The method is illustrated in detail along a concrete shop application.
- Published
- 2012
48. Interactive Vocabulary Alignment
- Author
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Victor de Boer, Jacco van Ossenbruggen, Michiel Hildebrand, Business Web and Media, Network Institute, Intelligent Information Systems, Centre for Advanced Media Research Amsterdam (CAMeRA), and Human-Centered Data Analytics
- Subjects
Vocabulary ,Information retrieval ,Computer science ,media_common.quotation_subject ,computer.file_format ,Object (computer science) ,Bottleneck ,World Wide Web ,Simple Knowledge Organization System ,Key (cryptography) ,Use case ,Quality (business) ,Control (linguistics) ,computer ,media_common - Abstract
In many heritage institutes, objects are routinely described using terms from predefined vocabularies. When object collections need to be merged or linked, the question arises how those vocabularies relate. In practice it often unclear for data providers how well alignment tools will perform on their specific vocabularies. This creates a bottleneck to align vocabularies, as data providers want to have tight control over the quality of their data. We will discuss the key limitations of current tools in more detail and propose an alternative approach. We will show how this approach has been used in two alignment use cases, and demonstrate how it is currently supported by our Amalgame alignment platform.
- Published
- 2011
49. Viability selection on body size in a non-marine ostracod
- Author
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Roberto F. Nespolo, Pedro Labarca, Leyla Cárdenas, and Rodrigo Scheihing
- Subjects
education.field_of_study ,Natural selection ,biology ,Directional selection ,Ecology ,Limnocythere ,Selection coefficient ,Population ,Zoology ,Aquatic Science ,biology.organism_classification ,Population bottleneck ,Stabilizing selection ,education ,Selection (genetic algorithm) - Abstract
One of the most important research topics in evolutionary ecology is body size evolution. Actually, several hypotheses have been proposed to explain the many observed patterns—also known as “rules”—of body size variation in across latitude, temperature, and time. The temperature–size rule (TSR), describes an inverse relationship between body size and temperature. We took advantage of the “natural laboratory” that the crustacean populations at the Chilean altiplano offers, to study the TSR in ostracods. We studied three populations of Limnocythere atacamae that are physically separated by several kilometers, and differ mainly by their permanent thermal regime. We found larger individuals in the hotspring compared to the cold ponds. Also, in the hotspring we found a significant quadratic selection coefficient, suggesting stabilizing selection in this population. The fitness profiles showed stabilizing selection in the hotspring, and positive directional selection in the ponds. Our results suggest the existence of an optimal body size above the population means. This optimal size is apparently attained in the hotspring population. Then, natural selection appears to be promoting a shift in the mean phenotype that, for some reason, is not attained in the cold environments. Genetic slippage and population bottleneck would explain this absence of response to selection.
- Published
- 2011
50. A One-Way Link Transceiver Design
- Author
-
Johan van der Tang, Arthur van Roermund, Emanuele Lopelli, and Integrated Circuits
- Subjects
Scheme (programming language) ,Frequency synthesizer ,Initial Phase Difference ,Frequency Error ,Computer science ,Phase Noise ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,Transmitter ,Microstrip Patch Antenna ,Bottleneck ,Collector Voltage ,Power (physics) ,law.invention ,Bluetooth ,Frequency divider ,Link budget ,law ,Electronic engineering ,computer ,computer.programming_language - Abstract
In this chapter the two-way link scenario is covered. In the first part of this chapter, the general guidelines for a two-way link transmitter design are given and a set of specification is derived. Starting from the fact that the frequency synthesizer is the real bottleneck in the design of an ultra-low power frequency-hopping radio for WSNs, the synthesizer specifications are derived. A new fast frequency-hopping synthesizer is proposed that achieves the targeted specifications with a power consumption smaller than 0.5 mW. The synthesizer building blocks are described focusing on the trade-offs required by the silicon implementation of the proposed architecture. In the second part of the chapter, the receiver design is discussed. A link budget analysis is performed and general guidelines in the design of the receiver are given. The chapter ends with the simulation and experimental. These results show that it is possible to implement a fast frequency-hopping scheme not only in complex and less power constrained radios (like Bluetooth radios), but also in severely power constrained radios meant for WSNs.
- Published
- 2011
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