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1. A database of chlorophyll a in Australian waters

Author

Davies, CH, Ajani, P, Armbrecht, L, Atkins, N, Baird, ME, Beard, J, Bonham, P, Burford, M, Clementson, L, Coad, P, Crawford, C, Dela-Cruz, J, Doblin, MA, Edgar, S, Eriksen, R, Everett, JD, Furnas, M, Harrison, DP, Hassler, C, Henschke, N, Hoenner, X, Ingleton, T, Jameson, I, Keesing, J, Leterme, SC, James McLaughlin, M, Miller, M, Moffatt, D, Moss, A, Nayar, S, Patten, NL, Patten, R, Pausina, SA, Proctor, R, Raes, E, Robb, M, Rothlisberg, P, Saeck, EA, Scanes, P, Suthers, IM, Swadling, KM, Talbot, S, Thompson, P, Thomson, PG, Uribe-Palomino, J, Van Ruth, P, Waite, AM, Wright, S, Richardson, AJ, Davies, CH, Ajani, P, Armbrecht, L, Atkins, N, Baird, ME, Beard, J, Bonham, P, Burford, M, Clementson, L, Coad, P, Crawford, C, Dela-Cruz, J, Doblin, MA, Edgar, S, Eriksen, R, Everett, JD, Furnas, M, Harrison, DP, Hassler, C, Henschke, N, Hoenner, X, Ingleton, T, Jameson, I, Keesing, J, Leterme, SC, James McLaughlin, M, Miller, M, Moffatt, D, Moss, A, Nayar, S, Patten, NL, Patten, R, Pausina, SA, Proctor, R, Raes, E, Robb, M, Rothlisberg, P, Saeck, EA, Scanes, P, Suthers, IM, Swadling, KM, Talbot, S, Thompson, P, Thomson, PG, Uribe-Palomino, J, Van Ruth, P, Waite, AM, Wright, S, and Richardson, AJ

Abstract

© The Author(s) 2018. Chlorophyll a is the most commonly used indicator of phytoplankton biomass in the marine environment. It is relatively simple and cost effective to measure when compared to phytoplankton abundance and is thus routinely included in many surveys. Here we collate 173, 333 records of chlorophyll a collected since 1965 from Australian waters gathered from researchers on regular coastal monitoring surveys and ocean voyages into a single repository. This dataset includes the chlorophyll a values as measured from samples analysed using spectrophotometry, fluorometry and high performance liquid chromatography (HPLC). The Australian Chlorophyll a database is freely available through the Australian Ocean Data Network portal (https://portal.aodn.org.au/). These data can be used in isolation as an index of phytoplankton biomass or in combination with other data to provide insight into water quality, ecosystem state, and relationships with other trophic levels such as zooplankton or fish.

Published
2018

2. A database of chlorophyll a in Australian waters

Author

Davies, CH, Ajani, P, Armbrecht, L, Atkins, N, Baird, ME, Beard, J, Bonham, P, Burford, M, Clementson, L, Coad, P, Crawford, C, Dela-Cruz, J, Doblin, MA, Edgar, S, Eriksen, R, Everett, JD, Furnas, M, Harrison, DP, Hassler, C, Henschke, N, Hoenner, X, Ingleton, T, Jameson, I, Keesing, J, Leterme, SC, James McLaughlin, M, Miller, M, Moffatt, D, Moss, A, Nayar, S, Patten, NL, Patten, R, Pausina, SA, Proctor, R, Raes, E, Robb, M, Rothlisberg, P, Saeck, EA, Scanes, P, Suthers, IM, Swadling, KM, Talbot, S, Thompson, P, Thomson, PG, Uribe-Palomino, J, Van Ruth, P, Waite, AM, Wright, S, Richardson, AJ, Davies, CH, Ajani, P, Armbrecht, L, Atkins, N, Baird, ME, Beard, J, Bonham, P, Burford, M, Clementson, L, Coad, P, Crawford, C, Dela-Cruz, J, Doblin, MA, Edgar, S, Eriksen, R, Everett, JD, Furnas, M, Harrison, DP, Hassler, C, Henschke, N, Hoenner, X, Ingleton, T, Jameson, I, Keesing, J, Leterme, SC, James McLaughlin, M, Miller, M, Moffatt, D, Moss, A, Nayar, S, Patten, NL, Patten, R, Pausina, SA, Proctor, R, Raes, E, Robb, M, Rothlisberg, P, Saeck, EA, Scanes, P, Suthers, IM, Swadling, KM, Talbot, S, Thompson, P, Thomson, PG, Uribe-Palomino, J, Van Ruth, P, Waite, AM, Wright, S, and Richardson, AJ

Abstract

© The Author(s) 2018. Chlorophyll a is the most commonly used indicator of phytoplankton biomass in the marine environment. It is relatively simple and cost effective to measure when compared to phytoplankton abundance and is thus routinely included in many surveys. Here we collate 173, 333 records of chlorophyll a collected since 1965 from Australian waters gathered from researchers on regular coastal monitoring surveys and ocean voyages into a single repository. This dataset includes the chlorophyll a values as measured from samples analysed using spectrophotometry, fluorometry and high performance liquid chromatography (HPLC). The Australian Chlorophyll a database is freely available through the Australian Ocean Data Network portal (https://portal.aodn.org.au/). These data can be used in isolation as an index of phytoplankton biomass or in combination with other data to provide insight into water quality, ecosystem state, and relationships with other trophic levels such as zooplankton or fish.

Published
2018

3. Modeling what we sample and sampling what we model: Challenges for zooplankton model assessment

Author

Everett, JD, Baird, ME, Buchanan, P, Bulman, C, Davies, C, Downie, R, Griffiths, C, Heneghan, R, Kloser, RJ, Laiolo, L, Lara-Lopez, A, Lozano-Montes, H, Matear, RJ, McEnnulty, F, Robson, B, Rochester, W, Skerratt, J, Smith, JA, Strzelecki, J, Suthers, IM, Swadling, KM, van Ruth, P, Richardson, AJ, Everett, JD, Baird, ME, Buchanan, P, Bulman, C, Davies, C, Downie, R, Griffiths, C, Heneghan, R, Kloser, RJ, Laiolo, L, Lara-Lopez, A, Lozano-Montes, H, Matear, RJ, McEnnulty, F, Robson, B, Rochester, W, Skerratt, J, Smith, JA, Strzelecki, J, Suthers, IM, Swadling, KM, van Ruth, P, and Richardson, AJ

Abstract

© 2017 Everett, Baird, Buchanan, Bulman, Davies, Downie, Griffiths, Heneghan, Kloser, Laiolo, Lara-Lopez, Lozano-Montes, Matear, McEnnulty, Robson, Rochester, Skerratt, Smith, Strzelecki, Suthers, Swadling, van Ruth and Richardson. Zooplankton are the intermediate trophic level between phytoplankton and fish, and are an important component of carbon and nutrient cycles, accounting for a large proportion of the energy transfer to pelagic fishes and the deep ocean. Given zooplankton's importance, models need to adequately represent zooplankton dynamics. A major obstacle, though, is the lack of model assessment. Here we try and stimulate the assessment of zooplankton in models by filling three gaps. The first is that many zooplankton observationalists are unfamiliar with the biogeochemical, ecosystem, size-based and individual-based models that have zooplankton functional groups, so we describe their primary uses and how each typically represents zooplankton. The second gap is that many modelers are unaware of the zooplankton data that are available, and are unaccustomed to the different zooplankton sampling systems, so we describe the main sampling platforms and discuss their strengths and weaknesses for model assessment. Filling these gaps in our understanding of models and observations provides the necessary context to address the last gap-a blueprint for model assessment of zooplankton. We detail two ways that zooplankton biomass/abundance observations can be used to assess models: data wrangling that transforms observations to be more similar to model output; and observation models that transform model outputs to be more like observations. We hope that this review will encourage greater assessment of zooplankton in models and ultimately improve the representation of their dynamics.

Published
2017

4. Modeling what we sample and sampling what we model: Challenges for zooplankton model assessment

Author

Everett, JD, Baird, ME, Buchanan, P, Bulman, C, Davies, C, Downie, R, Griffiths, C, Heneghan, R, Kloser, RJ, Laiolo, L, Lara-Lopez, A, Lozano-Montes, H, Matear, RJ, McEnnulty, F, Robson, B, Rochester, W, Skerratt, J, Smith, JA, Strzelecki, J, Suthers, IM, Swadling, KM, van Ruth, P, Richardson, AJ, Everett, JD, Baird, ME, Buchanan, P, Bulman, C, Davies, C, Downie, R, Griffiths, C, Heneghan, R, Kloser, RJ, Laiolo, L, Lara-Lopez, A, Lozano-Montes, H, Matear, RJ, McEnnulty, F, Robson, B, Rochester, W, Skerratt, J, Smith, JA, Strzelecki, J, Suthers, IM, Swadling, KM, van Ruth, P, and Richardson, AJ

Abstract

© 2017 Everett, Baird, Buchanan, Bulman, Davies, Downie, Griffiths, Heneghan, Kloser, Laiolo, Lara-Lopez, Lozano-Montes, Matear, McEnnulty, Robson, Rochester, Skerratt, Smith, Strzelecki, Suthers, Swadling, van Ruth and Richardson. Zooplankton are the intermediate trophic level between phytoplankton and fish, and are an important component of carbon and nutrient cycles, accounting for a large proportion of the energy transfer to pelagic fishes and the deep ocean. Given zooplankton's importance, models need to adequately represent zooplankton dynamics. A major obstacle, though, is the lack of model assessment. Here we try and stimulate the assessment of zooplankton in models by filling three gaps. The first is that many zooplankton observationalists are unfamiliar with the biogeochemical, ecosystem, size-based and individual-based models that have zooplankton functional groups, so we describe their primary uses and how each typically represents zooplankton. The second gap is that many modelers are unaware of the zooplankton data that are available, and are unaccustomed to the different zooplankton sampling systems, so we describe the main sampling platforms and discuss their strengths and weaknesses for model assessment. Filling these gaps in our understanding of models and observations provides the necessary context to address the last gap-a blueprint for model assessment of zooplankton. We detail two ways that zooplankton biomass/abundance observations can be used to assess models: data wrangling that transforms observations to be more similar to model output; and observation models that transform model outputs to be more like observations. We hope that this review will encourage greater assessment of zooplankton in models and ultimately improve the representation of their dynamics.

Published
2017

5. The ocean sampling day consortium

Author

Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Caçador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Löscher, CR, Kremp, A, DeLorenzo, ME, Øvreås, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhães, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Caçador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Löscher, CR, Kremp, A, DeLorenzo, ME, Øvreås, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhães, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, and Mea, M

Abstract

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Published
2015

6. The ocean sampling day consortium

Author

Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Caçador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Löscher, CR, Kremp, A, DeLorenzo, ME, Øvreås, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhães, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Caçador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Löscher, CR, Kremp, A, DeLorenzo, ME, Øvreås, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhães, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, and Mea, M

Abstract

© 2015 Kopf et al. Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Published
2015

7. The ocean sampling day consortium

Author

Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Caçador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Löscher, CR, Kremp, A, DeLorenzo, ME, Øvreås, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhães, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, RZ, Sonnenschein, EC, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Caçador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, CM, Luna, GM, Quero, GM, Löscher, CR, Kremp, A, DeLorenzo, ME, Øvreås, L, Tolman, J, LaRoche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, CP, Ramos, S, Magalhães, C, Jude-Lemeilleur, F, Aguirre-Macedo, ML, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, JA, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, MM, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, DMF, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, DC, Kandil, MM, Amaral, V, Biancalana, F, Santana, R, Pedrotti, ML, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, EH, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, and Mea, M

Abstract

© 2015 Kopf et al. Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Published
2015

8. The ocean sampling day consortium.

Author

Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R., Sonnenschein, E., Cariou, T., O'Gara, Fergal, Jackson, S., Orlic, S., Steinke, M., Busch, J., Duarte, B., Caçador, I., Canning-Clode, J., Bobrova, O., Marteinsson, V., Reynisson, E., Loureiro, C., Luna, G., Quero, G., Löscher, C., Kremp, A., DeLorenzo, M., Øvreås, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Katherine, B., Meyer, C., Ramos, S., Magalhães, C., Jude-Lemeilleur, F., Aguirre-Macedo, M., Wang, S., Poulton, N., Jones, S., Collin, R., Fuhrman, J., Conan, P., Alonso, C., Stambler, N., Goodwin, K., Yakimov, M., Baltar, F., Bodrossy, L., Van De Kamp, J., Frampton, D., Ostrowski, M., Van Ruth, P., Malthouse, P., Claus, S., Deneudt, K., Mortelmans, J., Pitois, S., Wallom, D., Salter, I., Costa, R., Schroeder, D., Kandil, M., Amaral, V., Biancalana, F., Santana, R., Pedrotti, M., Yoshida, T., Ogata, H., Ingleton, T., Munnik, K., Rodriguez-Ezpeleta, N., Berteaux-Lecellier, V., Wecker, P., Cancio, I., Vaulot, D., Bienhold, C., Ghazal, H., Chaouni, B., Essayeh, S., Ettamimi, S., Zaid, E., Boukhatem, N., Bouali, A., Chahboune, R., Barrijal, S., Timinouni, M., El Otmani, F., Bennani, M., Mea, M., Todorova, N., Karamfilov, V., Ten Hoopen, P., Cochrane, G., L'Haridon, S., Bizsel, K., Vezzi, A., Lauro, F., Martin, P., Jensen, R., Hinks, J., Gebbels, S., Rosselli, R., De Pascale, F., Schiavon, R., Dos Santos, A., Villar, E., Pesant, S., Cataletto, B., Malfatti, F., Edirisinghe, R., Silveira, J., Barbier, M., Turk, V., Tinta, T., Fuller, W., Salihoglu, I., Serakinci, N., Ergoren, M., Bresnan, E., Iriberri, J., Nyhus, P., Bente, E., Karlsen, H., Golyshin, P., Gasol, J., Moncheva, S., Dzhembekova, N., Johnson, Z., Sinigalliano, C., Gidley, M., Zingone, A., Danovaro, R., Tsiamis, G., Clark, M., Costa, A., El Bour, M., Martins, A., Collins, R., Ducluzeau, A., Martinez, J., Costello, M., Amaral-Zettler, L., Gilbert, J., Davies, N., Field, D., Glöckner, F., Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R., Sonnenschein, E., Cariou, T., O'Gara, Fergal, Jackson, S., Orlic, S., Steinke, M., Busch, J., Duarte, B., Caçador, I., Canning-Clode, J., Bobrova, O., Marteinsson, V., Reynisson, E., Loureiro, C., Luna, G., Quero, G., Löscher, C., Kremp, A., DeLorenzo, M., Øvreås, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Katherine, B., Meyer, C., Ramos, S., Magalhães, C., Jude-Lemeilleur, F., Aguirre-Macedo, M., Wang, S., Poulton, N., Jones, S., Collin, R., Fuhrman, J., Conan, P., Alonso, C., Stambler, N., Goodwin, K., Yakimov, M., Baltar, F., Bodrossy, L., Van De Kamp, J., Frampton, D., Ostrowski, M., Van Ruth, P., Malthouse, P., Claus, S., Deneudt, K., Mortelmans, J., Pitois, S., Wallom, D., Salter, I., Costa, R., Schroeder, D., Kandil, M., Amaral, V., Biancalana, F., Santana, R., Pedrotti, M., Yoshida, T., Ogata, H., Ingleton, T., Munnik, K., Rodriguez-Ezpeleta, N., Berteaux-Lecellier, V., Wecker, P., Cancio, I., Vaulot, D., Bienhold, C., Ghazal, H., Chaouni, B., Essayeh, S., Ettamimi, S., Zaid, E., Boukhatem, N., Bouali, A., Chahboune, R., Barrijal, S., Timinouni, M., El Otmani, F., Bennani, M., Mea, M., Todorova, N., Karamfilov, V., Ten Hoopen, P., Cochrane, G., L'Haridon, S., Bizsel, K., Vezzi, A., Lauro, F., Martin, P., Jensen, R., Hinks, J., Gebbels, S., Rosselli, R., De Pascale, F., Schiavon, R., Dos Santos, A., Villar, E., Pesant, S., Cataletto, B., Malfatti, F., Edirisinghe, R., Silveira, J., Barbier, M., Turk, V., Tinta, T., Fuller, W., Salihoglu, I., Serakinci, N., Ergoren, M., Bresnan, E., Iriberri, J., Nyhus, P., Bente, E., Karlsen, H., Golyshin, P., Gasol, J., Moncheva, S., Dzhembekova, N., Johnson, Z., Sinigalliano, C., Gidley, M., Zingone, A., Danovaro, R., Tsiamis, G., Clark, M., Costa, A., El Bour, M., Martins, A., Collins, R., Ducluzeau, A., Martinez, J., Costello, M., Amaral-Zettler, L., Gilbert, J., Davies, N., Field, D., and Glöckner, F.

Abstract

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Published
2015

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