1. SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes
- Author
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Ministerio de Ciencia e Innovación (España), European Commission, Comunidad de Madrid, Novo Nordisk Foundation, Martínez-García, Esteban [0000-0001-8475-7286], Fraile, Sofía [0000-0002-6476-7513], Algar, Elena [0000-0002-0178-3153], Aparicio, Tomás [0000-0002-0133-0461], Velázquez, Elena [0000-0001-6648-1634], Calles, Belén [0000-0003-0603-0115], Tas, Huseyin [0000-0003-4804-2237], Blázquez, Blas [0000-0003-4099-6909], Sánchez-Sampedro, Lucas [0000-0001-9602-2762], Norholm, Morten H.H. [0000-0002-7871-5191], Volke, Daniel C. [0000-0003-0244-2534], Wirth, Nicolas T. [0000-0003-0799-1321], Alejaldre, Lorea [0000-0003-3086-5446], Grozinger, Lewis [0000-0002-9024-701X], Goñi-Moreno, Ángel [0000-0002-2097-2507], Nikel, Pablo I. [0000-0002-9313-7481], Nogales, Juan [0000-0002-4961-0833], de Lorenzo, Victor [0000-0002-6041-2731], Martínez-García, Esteban, Fraile, Sofía, Algar, Elena, Aparicio, Tomás, Velázquez, Elena, Calles, Belén, Tas, Huseyin, Blázquez, Blas, Martín, Bruno, Prieto, Clara, Sánchez-Sampedro, Lucas, Norholm, Morten H.H., Volke, Daniel C., Wirth, Nicolas T., Dvorak, Pavel, Alejaldre, Lorea, Grozinger, Lewis, Crowther, Matthew, Goñi-Moreno, Ángel, Nikel, Pablo I., Nogales, Juan, de Lorenzo, Victor, Ministerio de Ciencia e Innovación (España), European Commission, Comunidad de Madrid, Novo Nordisk Foundation, Martínez-García, Esteban [0000-0001-8475-7286], Fraile, Sofía [0000-0002-6476-7513], Algar, Elena [0000-0002-0178-3153], Aparicio, Tomás [0000-0002-0133-0461], Velázquez, Elena [0000-0001-6648-1634], Calles, Belén [0000-0003-0603-0115], Tas, Huseyin [0000-0003-4804-2237], Blázquez, Blas [0000-0003-4099-6909], Sánchez-Sampedro, Lucas [0000-0001-9602-2762], Norholm, Morten H.H. [0000-0002-7871-5191], Volke, Daniel C. [0000-0003-0244-2534], Wirth, Nicolas T. [0000-0003-0799-1321], Alejaldre, Lorea [0000-0003-3086-5446], Grozinger, Lewis [0000-0002-9024-701X], Goñi-Moreno, Ángel [0000-0002-2097-2507], Nikel, Pablo I. [0000-0002-9313-7481], Nogales, Juan [0000-0002-4961-0833], de Lorenzo, Victor [0000-0002-6041-2731], Martínez-García, Esteban, Fraile, Sofía, Algar, Elena, Aparicio, Tomás, Velázquez, Elena, Calles, Belén, Tas, Huseyin, Blázquez, Blas, Martín, Bruno, Prieto, Clara, Sánchez-Sampedro, Lucas, Norholm, Morten H.H., Volke, Daniel C., Wirth, Nicolas T., Dvorak, Pavel, Alejaldre, Lorea, Grozinger, Lewis, Crowther, Matthew, Goñi-Moreno, Ángel, Nikel, Pablo I., Nogales, Juan, and de Lorenzo, Victor
- Abstract
The SEVA platform (https://seva-plasmids.com) was launched one decade ago, both as a database (DB) and as a physical repository of plasmid vectors for genetic analysis and engineering of Gram-negative bacteria with a structure and nomenclature that follows a strict, fixed architecture of functional DNA segments. While the current update keeps the basic features of earlier versions, the platform has been upgraded not only with many more ready-to-use plasmids but also with features that expand the range of target species, harmonize DNA assembly methods and enable new applications. In particular, SEVA 4.0 includes (i) a sub-collection of plasmids for easing the composition of multiple DNA segments with MoClo/Golden Gate technology, (ii) vectors for Gram-positive bacteria and yeast and [iii] off-the-shelf constructs with built-in functionalities. A growing collection of plasmids that capture part of the standard-but not its entirety-has been compiled also into the DB and repository as a separate corpus (SEVAsib) because of its value as a resource for constructing and deploying phenotypes of interest. Maintenance and curation of the DB were accompanied by dedicated diffusion and communication channels that make the SEVA platform a popular resource for genetic analyses, genome editing and bioengineering of a large number of microorganisms.
- Published
- 2023