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Anisakids are nematodes responsible for different clinical patterns in humans. The well-known human-infecting Anisakis species include members of the Anisakis simplex (AS) complex. Humans usually contract anisakiasis through ingestion of raw or undercooked seafood containing Anisakis larvae. Once Anisakis has been ingested, patients may develop disease driven directly by Anisakis larvae and/or by allergic reaction due to this nematode. The capability of inducing allergic reactions depends on the expression of specific antigens by nematodes and host factors. This study aims to resume actual knowledge about AS and Anisakiasis with regard to epidemiology, pathophysiology, clinical presentation, diagnosis, and treatment. Particular attention is paid to Anisakis allergens and their cross-reactivity on available diagnostic methods, and defining a diagnostic pathway for Anisakis allergy. Because only a few data are available in the literature about pediatric population, we focus on this group of patients specifically., NA

Historical materials are abundant. Yet, piecing together how human knowledge has evolved and spread both diachronically and synchronically remains a challenge that can so far only be very selectively addressed. The vast volume of materials precludes comprehensive studies, given the restricted number of human specialists. However, as large amounts of historical materials are now available in digital form there is a promising opportunity for AI-assisted historical analysis. In this work, we take a pivotal step towards analyzing vast historical corpora by employing innovative machine learning (ML) techniques, enabling in-depth historical insights on a grand scale. Our study centers on the evolution of knowledge within the `Sacrobosco Collection' -- a digitized collection of 359 early modern printed editions of textbooks on astronomy used at European universities between 1472 and 1650 -- roughly 76,000 pages, many of which contain astronomic, computational tables. An ML based analysis of these tables helps to unveil important facets of the spatio-temporal evolution of knowledge and innovation in the field of mathematical astronomy in the period, as taught at European universities.

In this paper, we present a pipeline for image extraction from historical documents using foundation models, and evaluate text-image prompts and their effectiveness on humanities datasets of varying levels of complexity. The motivation for this approach stems from the high interest of historians in visual elements printed alongside historical texts on the one hand, and from the relative lack of well-annotated datasets within the humanities when compared to other domains. We propose a sequential approach that relies on GroundDINO and Meta's Segment-Anything-Model (SAM) to retrieve a significant portion of visual data from historical documents that can then be used for downstream development tasks and dataset creation, as well as evaluate the effect of different linguistic prompts on the resulting detections., Comment: 12 pages, 3 figures, Accepted in ICIAP2023, AI4DH workshop

In this paper we will demonstrate the urgent necessity of a linked data policy that includes a normative framework and implementation technique for research projects in computa- tional history and, more generally, in computational humanities. Rather than discussing the subject on an abstract level, we will instead apply examples from own experiences linking data located in different repositories. We will primarily focus on the repository of the long-term research project «Repertorium academicum germanicum» (RAG)1. To begin, we will explain our motivation to build connections between different datasets, followed by a discussion of our methodology in navigating other repositories. In the conclu- sion, we will offer suggestions concerning future research and policy in computational history.

Traditionally, deep learning methods for breast cancer classification perform a single-view analysis. However, radiologists simultaneously analyze all four views that compose a mammography exam, owing to the correlations contained in mammography views, which present crucial information for identifying tumors. In light of this, some studies have started to propose multi-view methods. Nevertheless, in such existing architectures, mammogram views are processed as independent images by separate convolutional branches, thus losing correlations among them. To overcome such limitations, in this paper, we propose a methodological approach for multi-view breast cancer classification based on parameterized hypercomplex neural networks. Thanks to hypercomplex algebra properties, our networks are able to model, and thus leverage, existing correlations between the different views that comprise a mammogram, thus mimicking the reading process performed by clinicians. This happens because hypercomplex networks capture both global properties, as standard neural models, as well as local relations, i.e., inter-view correlations, which real-valued networks fail at modeling. We define architectures designed to process two-view exams, namely PHResNets, and four-view exams, i.e., PHYSEnet and PHYBOnet. Through an extensive experimental evaluation conducted with publicly available datasets, we demonstrate that our proposed models clearly outperform real-valued counterparts and state-of-the-art methods, proving that breast cancer classification benefits from the proposed multi-view architectures. We also assess the method generalizability beyond mammogram analysis by considering different benchmarks, as well as a finer-scaled task such as segmentation. Full code and pretrained models for complete reproducibility of our experiments are freely available at https://github.com/ispamm/PHBreast., Comment: This paper has been submitted to IEEE Transactions on Pattern Analysis and Machine Intelligence

In this paper we will demonstrate the urgent necessity of a linked data policy that includes a normative framework and implementation technique for research projects in computa- tional history and, more generally, in computational humanities. Rather than discussing the subject on an abstract level, we will instead apply examples from own experiences linking data located in different repositories. We will primarily focus on the repository of the long-term research project «Repertorium academicum germanicum» (RAG)1. To begin, we will explain our motivation to build connections between different datasets, followed by a discussion of our methodology in navigating other repositories. In the conclu- sion, we will offer suggestions concerning future research and policy in computational history.

This volume deals with the language of the British upper class in natural face-to-face dialogue and how this is rendered fictionally in audiovisual media. Its main aim is that of reorganising the sparse information on the topic that is found in previous scholarly studies through a qualitative methodological approach. After focusing on the linguistic description and evolution of the upper-class sociolect, the study offers original insights on the language of the Royal Family and its representation in the TV series The Crown. The results from this research, which combines the disciplines of sociolinguistics and dialectology applied to the audiovisual text, will hopefully open a new path in the study of language of elite groups in Britain, arguably an under-researched topic.

This volume deals with the language of the British upper class in natural face-to-face dialogue and how this is rendered fictionally in audiovisual media. Its main aim is that of reorganising the sparse information on the topic that is found in previous scholarly studies through a qualitative methodological approach. After focusing on the linguistic description and evolution of the upper-class sociolect, the study offers original insights on the language of the Royal Family and its representation in the TV series The Crown. The results from this research, which combines the disciplines of sociolinguistics and dialectology applied to the audiovisual text, will hopefully open a new path in the study of language of elite groups in Britain, arguably an under-researched topic.

This volume deals with the language of the British upper class in natural face-to-face dialogue and how this is rendered fictionally in audiovisual media. Its main aim is that of reorganising the sparse information on the topic that is found in previous scholarly studies through a qualitative methodological approach. After focusing on the linguistic description and evolution of the upper-class sociolect, the study offers original insights on the language of the Royal Family and its representation in the TV series The Crown. The results from this research, which combines the disciplines of sociolinguistics and dialectology applied to the audiovisual text, will hopefully open a new path in the study of language of elite groups in Britain, arguably an under-researched topic.

Digital research outputs in the form of websites, databases and interactive visualisation tools pose a challenge for long-term maintenance and reusability. A central problem for libraries and research institutions working in the digital humanities is that digital projects require constant maintenance: they are not static artefacts that can be preserved but living software environments that must be maintained. In this chapter, we argue in favour of creating semantically rich research data that can be separated from the software used to create and view it. We outline how we put this approach into practice, both within the scope of an individual research project and at scale, as libraries take on new responsibilities in managing digital research outputs. We hope to offer insights into the kind of artefacts that can be preserved in principle and the technical solutions with which reusability of research data can be achieved in order to make long-term preservation of digital research outputs feasible.

Digital research outputs in the form of websites, databases and interactive visualisation tools pose a challenge for long-term maintenance and reusability. A central problem for libraries and research institutions working in the digital humanities is that digital projects require constant maintenance: they are not static artefacts that can be preserved but living software environments that must be maintained. In this chapter, we argue in favour of creating semantically rich research data that can be separated from the software used to create and view it. We outline how we put this approach into practice, both within the scope of an individual research project and at scale, as libraries take on new responsibilities in managing digital research outputs. We hope to offer insights into the kind of artefacts that can be preserved in principle and the technical solutions with which reusability of research data can be achieved in order to make long-term preservation of digital research outputs feasible.

Background: As research on HIV vaccines continues to advance, studies exploring the feasibility of this intervention are necessary to inform uptake and dissemination strategies with key populations, including people who use drugs (PWUD). Methods: We conducted 25 in-depth qualitative interviews examining HIV vaccine acceptability among PWUD in Vancouver, Canada. Participants were recruited from an ongoing prospective cohort of HIV-negative PWUD. Data were coded using NVivo, and analyzed thematically. Results: Acceptability was framed by practical considerations such as cost and side effects, and was influenced by broader trust of government bodies and health care professionals. While an HIV vaccine was perceived as an important prevention tool, willingness to be vaccinated was low. Results suggest that future vaccine implementation must consider how to minimize the burden an HIV vaccine may place on PWUD. Centering the role of health care providers in information dissemination and delivery may assist with uptake. Conclusions: Our findings suggest improvements in care and improved patient-provider relationships would increase the acceptability of a potential HIV vaccine among this population.

Outbreaks of Rift Valley fever (RVF) occurred in Namibia in 2010 and 2011. Complete genome characterization was obtained from virus isolates collected during disease outbreaks in southern Namibia in 2010 and from wildlife in Etosha National Park in 2011, close to the area where RVF outbreaks occurred in domestic livestock. The virus strains were sequenced using Sanger sequencing (Namibia_2010) or next generation sequencing (Namibia_2011). A sequence-independent, single-primer amplification (SISPA) protocol was used in combination with the Illumina Next 500 sequencer. Phylogenetic analysis of the sequences of the small (S), medium (M), and large (L) genome segments of RVF virus (RVFV) provided evidence that two distinct RVFV strains circulated in the country. The strain collected in Namibia in 2010 is genetically similar to RVFV strains circulating in South Africa in 2009 and 2010, confirming that the outbreaks reported in the southern part of Namibia in 2010 were caused by possible dissemination of the infection from South Africa. Isolates collected in 2011 were close to RVFV isolates from 2010 collected in humans in Sudan and which belong to the large lineage containing RVFV strains that caused an outbreak in 2006–2008 in eastern Africa. This investigation showed that the RVFV strains circulating in Namibia in 2010 and 2011 were from two different introductions and that RVFV has the ability to move across regions. This supports the need for risk-based surveillance and monitoring.

Outbreaks of Rift Valley fever (RVF) occurred in Namibia in 2010 and 2011. Complete genome characterization was obtained from virus isolates collected during disease outbreaks in southern Namibia in 2010 and from wildlife in Etosha National Park in 2011, close to the area where RVF outbreaks occurred in domestic livestock. The virus strains were sequenced using Sanger sequencing (Namibia_2010) or next generation sequencing (Namibia_2011). A sequence-independent, single-primer amplification (SISPA) protocol was used in combination with the Illumina Next 500 sequencer. Phylogenetic analysis of the sequences of the small (S), medium (M), and large (L) genome segments of RVF virus (RVFV) provided evidence that two distinct RVFV strains circulated in the country. The strain collected in Namibia in 2010 is genetically similar to RVFV strains circulating in South Africa in 2009 and 2010, confirming that the outbreaks reported in the southern part of Namibia in 2010 were caused by possible dissemination of the infection from South Africa. Isolates collected in 2011 were close to RVFV isolates from 2010 collected in humans in Sudan and which belong to the large lineage containing RVFV strains that caused an outbreak in 2006–2008 in eastern Africa. This investigation showed that the RVFV strains circulating in Namibia in 2010 and 2011 were from two different introductions and that RVFV has the ability to move across regions. This supports the need for risk-based surveillance and monitoring.

Outbreaks of Rift Valley fever (RVF) occurred in Namibia in 2010 and 2011. Complete genome characterization was obtained from virus isolates collected during disease outbreaks in southern Namibia in 2010 and from wildlife in Etosha National Park in 2011, close to the area where RVF outbreaks occurred in domestic livestock. The virus strains were sequenced using Sanger sequencing (Namibia_2010) or next generation sequencing (Namibia_2011). A sequence-independent, single-primer amplification (SISPA) protocol was used in combination with the Illumina Next 500 sequencer. Phylogenetic analysis of the sequences of the small (S), medium (M), and large (L) genome segments of RVF virus (RVFV) provided evidence that two distinct RVFV strains circulated in the country. The strain collected in Namibia in 2010 is genetically similar to RVFV strains circulating in South Africa in 2009 and 2010, confirming that the outbreaks reported in the southern part of Namibia in 2010 were caused by possible dissemination of the infection from South Africa. Isolates collected in 2011 were close to RVFV isolates from 2010 collected in humans in Sudan and which belong to the large lineage containing RVFV strains that caused an outbreak in 2006–2008 in eastern Africa. This investigation showed that the RVFV strains circulating in Namibia in 2010 and 2011 were from two different introductions and that RVFV has the ability to move across regions. This supports the need for risk-based surveillance and monitoring.

Outbreaks of Rift Valley fever (RVF) occurred in Namibia in 2010 and 2011. Complete genome characterization was obtained from virus isolates collected during disease outbreaks in southern Namibia in 2010 and from wildlife in Etosha National Park in 2011, close to the area where RVF outbreaks occurred in domestic livestock. The virus strains were sequenced using Sanger sequencing (Namibia_2010) or next generation sequencing (Namibia_2011). A sequence-independent, single-primer amplification (SISPA) protocol was used in combination with the Illumina Next 500 sequencer. Phylogenetic analysis of the sequences of the small (S), medium (M), and large (L) genome segments of RVF virus (RVFV) provided evidence that two distinct RVFV strains circulated in the country. The strain collected in Namibia in 2010 is genetically similar to RVFV strains circulating in South Africa in 2009 and 2010, confirming that the outbreaks reported in the southern part of Namibia in 2010 were caused by possible dissemination of the infection from South Africa. Isolates collected in 2011 were close to RVFV isolates from 2010 collected in humans in Sudan and which belong to the large lineage containing RVFV strains that caused an outbreak in 2006–2008 in eastern Africa. This investigation showed that the RVFV strains circulating in Namibia in 2010 and 2011 were from two different introductions and that RVFV has the ability to move across regions. This supports the need for risk-based surveillance and monitoring.

We investigated the evolution and transformation of scientific knowledge in the early modern period, analyzing more than 350 different editions of textbooks used for teaching astronomy in European universities from the late fifteenth century to mid-seventeenth century. These historical sources constitute the Sphaera Corpus. By examining different semantic relations among individual parts of each edition on record, we built a multiplex network consisting of six layers, as well as the aggregated network built from the superposition of all the layers. The network analysis reveals the emergence of five different communities. The contribution of each layer in shaping the communities and the properties of each community are studied. The most influential books in the corpus are found by calculating the average age of all the out-going and in-coming links for each book. A small group of editions is identified as a transmitter of knowledge as they bridge past knowledge to the future through a long temporal interval. Our analysis, moreover, identifies the most disruptive books. These books introduce new knowledge that is then adopted by almost all the books published afterwards until the end of the whole period of study. The historical research on the content of the identified books, as an empirical test, finally corroborates the results of all our analyses., Comment: 19 pages, 9 figures

Many learning algorithms such as kernel machines, nearest neighbors, clustering, or anomaly detection, are based on the concept of 'distance' or 'similarity'. Before similarities are used for training an actual machine learning model, we would like to verify that they are bound to meaningful patterns in the data. In this paper, we propose to make similarities interpretable by augmenting them with an explanation in terms of input features. We develop BiLRP, a scalable and theoretically founded method to systematically decompose similarity scores on pairs of input features. Our method can be expressed as a composition of LRP explanations, which were shown in previous works to scale to highly nonlinear functions. Through an extensive set of experiments, we demonstrate that BiLRP robustly explains complex similarity models, e.g. built on VGG-16 deep neural network features. Additionally, we apply our method to an open problem in digital humanities: detailed assessment of similarity between historical documents such as astronomical tables. Here again, BiLRP provides insight and brings verifiability into a highly engineered and problem-specific similarity model., Comment: 12 pages, 10 figures

Outbreaks of Rift Valley fever (RVF) occurred in Namibia in 2010 and 2011. Complete genome characterization was obtained from virus isolates collected during disease outbreaks in southern Namibia in 2010 and from wildlife in Etosha National Park in 2011, close to the area where RVF outbreaks occurred in domestic livestock. The virus strains were sequenced using Sanger sequencing (Namibia_2010) or next generation sequencing (Namibia_2011). A sequence-independent, single-primer amplification (SISPA) protocol was used in combination with the Illumina Next 500 sequencer. Phylogenetic analysis of the sequences of the small (S), medium (M), and large (L) genome segments of RVF virus (RVFV) provided evidence that two distinct RVFV strains circulated in the country. The strain collected in Namibia in 2010 is genetically similar to RVFV strains circulating in South Africa in 2009 and 2010, confirming that the outbreaks reported in the southern part of Namibia in 2010 were caused by possible dissemination of the infection from South Africa. Isolates collected in 2011 were close to RVFV isolates from 2010 collected in humans in Sudan and which belong to the large lineage containing RVFV strains that caused an outbreak in 2006–2008 in eastern Africa. This investigation showed that the RVFV strains circulating in Namibia in 2010 and 2011 were from two different introductions and that RVFV has the ability to move across regions. This supports the need for risk-based surveillance and monitoring.

We investigate the role of degradation of mRNA on protein synthesis using the totally asymmetric simple exclusion process (TASEP) as the underlying model for ribosome dynamics. mRNA degradation has a strong effect on the lifetime distribution of the mRNA, which in turn affects polysome statistics such as the number of ribosomes present on an mRNA strand of a given size. An average over mRNA of all ages is equivalent to an average over possible configurations of the corresponding TASEP-both before steady state and in steady state. To evaluate the relevant quantities for the translation problem, we first study the approach towards steady state of the TASEP, starting with an empty lattice representing an unloaded mRNA. When approaching the high density phase, the system shows two distinct phases with the entry and exit boundaries taking control of the density at their respective ends in the second phase. The approach towards the maximal current phase exhibits the surprising property that the ribosome entry flux can exceed the maximum possible steady state value. In all phases, the averaging over the mRNA age distribution shows a decrease in the average ribosome density profile as a function of distance from the entry boundary. For entry/exit parameters corresponding to the high density phase of TASEP, the average ribosome density profile also has a maximum near the exit end.

We investigate the role of degradation of mRNA on protein synthesis using the totally asymmetric simple exclusion process (TASEP) as the underlying model for ribosome dynamics. mRNA degradation has a strong effect on the lifetime distribution of the mRNA, which in turn affects polysome statistics such as the number of ribosomes present on an mRNA strand of a given size. An average over mRNA of all ages is equivalent to an average over possible configurations of the corresponding TASEP-both before steady state and in steady state. To evaluate the relevant quantities for the translation problem, we first study the approach towards steady state of the TASEP, starting with an empty lattice representing an unloaded mRNA. When approaching the high density phase, the system shows two distinct phases with the entry and exit boundaries taking control of the density at their respective ends in the second phase. The approach towards the maximal current phase exhibits the surprising property that the ribosome entry flux can exceed the maximum possible steady state value. In all phases, the averaging over the mRNA age distribution shows a decrease in the average ribosome density profile as a function of distance from the entry boundary. For entry/exit parameters corresponding to the high density phase of TASEP, the average ribosome density profile also has a maximum near the exit end.

We investigate the role of degradation of mRNA on protein synthesis using the totally asymmetric simple exclusion process (TASEP) as the underlying model for ribosome dynamics. mRNA degradation has a strong effect on the lifetime distribution of the mRNA, which in turn affects polysome statistics such as the number of ribosomes present on an mRNA strand of a given size. An average over mRNA of all ages is equivalent to an average over possible configurations of the corresponding TASEP-both before steady state and in steady state. To evaluate the relevant quantities for the translation problem, we first study the approach towards steady state of the TASEP, starting with an empty lattice representing an unloaded mRNA. When approaching the high density phase, the system shows two distinct phases with the entry and exit boundaries taking control of the density at their respective ends in the second phase. The approach towards the maximal current phase exhibits the surprising property that the ribosome entry flux can exceed the maximum possible steady state value. In all phases, the averaging over the mRNA age distribution shows a decrease in the average ribosome density profile as a function of distance from the entry boundary. For entry/exit parameters corresponding to the high density phase of TASEP, the average ribosome density profile also has a maximum near the exit end.

We investigate the role of degradation of mRNA on protein synthesis using the totally asymmetric simple exclusion process (TASEP) as the underlying model for ribosome dynamics. mRNA degradation has a strong effect on the lifetime distribution of the mRNA, which in turn affects polysome statistics such as the number of ribosomes present on an mRNA strand of a given size. An average over mRNA of all ages is equivalent to an average over possible configurations of the corresponding TASEP-both before steady state and in steady state. To evaluate the relevant quantities for the translation problem, we first study the approach towards steady state of the TASEP, starting with an empty lattice representing an unloaded mRNA. When approaching the high density phase, the system shows two distinct phases with the entry and exit boundaries taking control of the density at their respective ends in the second phase. The approach towards the maximal current phase exhibits the surprising property that the ribosome entry flux can exceed the maximum possible steady state value. In all phases, the averaging over the mRNA age distribution shows a decrease in the average ribosome density profile as a function of distance from the entry boundary. For entry/exit parameters corresponding to the high density phase of TASEP, the average ribosome density profile also has a maximum near the exit end.

We compute the Form Factors of the relevant scaling operators in a class of integrable models without internal symmetries by exploiting their cluster properties. Their identification is established by computing the corresponding anomalous dimensions by means of Delfino--Simonetti--Cardy sum--rule and further confirmed by comparing some universal ratios of the nearby non--integrable quantum field theories with their independent numerical determination., Comment: Latex file, 35 pages with 5 Postscript figures

The magnetic deformation of the Ising Model, the thermal deformations of both the Tricritical Ising Model and the Tricritical Potts Model are governed by an algebraic structure based on the Dynkin diagram associated to the exceptional algebras $E_n$ (respectively for $n=8,7,6$). We make use of these underlying structures as well as of the discrete symmetries of the models to compute the matrix elements of the stress--energy tensor and its two--point correlation function by means of the spectral representation method., Comment: 52 pages

We show that the problem of Random Walk with boundary attractive potential may be mapped onto the free massive bosonic Quantum Field Theory with a line of defect. This mapping permits to recover the statistical properties of the Random Walks by using boundary $S$--matrix and Form Factor techniques., Comment: 17 pages, Latex, 3 figures included

We propose the factorizable S-matrices of the massive excitations of the non-unitary minimal model $M_{2,11}$ perturbed by the operator $\Phi_{1,4}$. The massive excitations and the whole set of two particle S-matrices of the theory is simply related to the $E_8$ unitary minimal scattering theory. The counting argument and the Thermodynamic Bethe Ansatz (TBA) are applied to this scattering theory in order to support this interpretation. Generalizing this result, we describe a new family of NON UNITARY and DIAGONAL $ADE$-related scattering theories. A further generalization suggests the magnonic TBA for a large class of non-unitary $\G\otimes\G/\G$ coset models ($\G=A_{odd},D_n,E_{6,7,8}$) perturbed by $\Phi_{id,id,adj}$, described by non-diagonal S-matrices., Comment: 13 pages, Latex (no macros), DFUB-92-12, DFTT/30-92

We prove a useful identity valid for all $ADE$ minimal S-matrices, that clarifies the transformation of the relative thermodynamic Bethe Ansatz (TBA) from its standard form into the universal one proposed by Al.B.Zamolodchikov. By considering the graph encoding of the system of functional equations for the exponentials of the pseudoenergies, we show that any such system having the same form as those for the $ADE$ TBA's, can be encoded on $A,D,E,A/Z_2$ only. This includes, besides the known $ADE$ diagonal scattering, the set of all $SU(2)$ related {\em magnonic} TBA's. We explore this class sistematically and find some interesting new massive and massless RG flows. The generalization to classes related to higher rank algebras is briefly presented and an intriguing relation with level-rank duality is signalled., Comment: 29 pages, Latex (no macros) DFUB-92-11, DFTT-31/92