1. A distinctive family of L,D-transpeptidases catalyzing L-Ala-mDAP crosslinks in Alpha- and Betaproteobacteria
- Author
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Swedish Research Council, European Synchrotron Radiation Facility, Knut and Alice Wallenberg Foundation, Kempe Foundation, Ministerio de Ciencia e Innovación (España), #NODATA#, Alvarez, Laura [0000-0003-2429-7542], Torrens, Gabriel [0000-0002-0450-1430], Ter Beek, Josy [0000-0003-4165-9277], Miguel-Ruano, Vega [0000-0002-2492-7164], Gago, Federico [0000-0002-3071-4878], Berntsson, Ronnie P.-A. [0000-0001-6848-322X], Cava, Felipe [0000-0001-5995-718X], Espaillat, Akbar, Alvarez, Laura, Torrens, Gabriel, Ter Beek, Josy, Miguel-Ruano, Vega, Irazoki, Oihane, Gago, Federico, Hermoso, Juan A., Berntsson, Ronnie P.-A., Cava, Felipe, Swedish Research Council, European Synchrotron Radiation Facility, Knut and Alice Wallenberg Foundation, Kempe Foundation, Ministerio de Ciencia e Innovación (España), #NODATA#, Alvarez, Laura [0000-0003-2429-7542], Torrens, Gabriel [0000-0002-0450-1430], Ter Beek, Josy [0000-0003-4165-9277], Miguel-Ruano, Vega [0000-0002-2492-7164], Gago, Federico [0000-0002-3071-4878], Berntsson, Ronnie P.-A. [0000-0001-6848-322X], Cava, Felipe [0000-0001-5995-718X], Espaillat, Akbar, Alvarez, Laura, Torrens, Gabriel, Ter Beek, Josy, Miguel-Ruano, Vega, Irazoki, Oihane, Gago, Federico, Hermoso, Juan A., Berntsson, Ronnie P.-A., and Cava, Felipe
- Abstract
The bacterial cell-wall peptidoglycan is made of glycan strands crosslinked by short peptide stems. Crosslinks are catalyzed by DD-transpeptidases (4,3-crosslinks) and LD-transpeptidases (3,3-crosslinks). However, recent research on non-model species has revealed novel crosslink types, suggesting the existence of uncharacterized enzymes. Here, we identify an LD-transpeptidase, LDTGo, that generates 1,3-crosslinks in the acetic-acid bacterium Gluconobacter oxydans. LDTGo-like proteins are found in Alpha- and Betaproteobacteria lacking LD3,3-transpeptidases. In contrast with the strict specificity of typical LD- and DD-transpeptidases, LDTGo can use non-terminal amino acid moieties for crosslinking. A high-resolution crystal structure of LDTGo reveals unique features when compared to LD3,3-transpeptidases, including a proline-rich region that appears to limit substrate access, and a cavity accommodating both glycan chain and peptide stem from donor muropeptides. Finally, we show that DD-crosslink turnover is involved in supplying the necessary substrate for LD1,3-transpeptidation. This phenomenon underscores the interplay between distinct crosslinking mechanisms in maintaining cell wall integrity in G. oxydans.
- Published
- 2024