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1. Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure

Author

López-Labrador, F.X. (F. Xavier), Brown, J.R. (Julianne R.), Fischer, N. (Nicole), Harvala, H. (Heli), Boheemen, S. (Sander) van, Cinek, O. (Ondrej), Sayiner, A. (Arzu), Madsen, T.V. (Tina Vasehus), Auvinen, E. (Eeva), Kufner, V. (Verena), Huber, M. (Michael), Rodriguez, C. (Christophe), Jonges, M. (Marcel), Hönemann, M. (Mario), Susi, P. (Petri), Sousa, H. (Hugo), Klapper, P.E. (Paul E.), Pérez-Cataluňa, A. (Alba), Hernandez, M. (Marta), Molenkamp, R. (Richard), der Hoek, L.V. (Lia van), Schuurman, R. (Rob), Couto, N. (Natacha), Leuzinger, K. (Karoline), Simmonds, P. (Peter), Beer, M. (Martin), Höper, D. (Dirk), Kamminga, S. (Sergio), Feltkamp, M.C.W. (Mariet C.W.), Rodríguez-Díaz, J. (Jesús), Keyaerts, E. (Els), Nielsen, X.C. (Xiaohui Chen), Puchhammer-Stöckl, E. (Elisabeth), Kroes, A.C.M. (Aloys), Buesa, J. (Javier), Breuer, J. (Judy), Claas, E.C.J. (Eric), Vries, J.J.C. (Jutte) de, López-Labrador, F.X. (F. Xavier), Brown, J.R. (Julianne R.), Fischer, N. (Nicole), Harvala, H. (Heli), Boheemen, S. (Sander) van, Cinek, O. (Ondrej), Sayiner, A. (Arzu), Madsen, T.V. (Tina Vasehus), Auvinen, E. (Eeva), Kufner, V. (Verena), Huber, M. (Michael), Rodriguez, C. (Christophe), Jonges, M. (Marcel), Hönemann, M. (Mario), Susi, P. (Petri), Sousa, H. (Hugo), Klapper, P.E. (Paul E.), Pérez-Cataluňa, A. (Alba), Hernandez, M. (Marta), Molenkamp, R. (Richard), der Hoek, L.V. (Lia van), Schuurman, R. (Rob), Couto, N. (Natacha), Leuzinger, K. (Karoline), Simmonds, P. (Peter), Beer, M. (Martin), Höper, D. (Dirk), Kamminga, S. (Sergio), Feltkamp, M.C.W. (Mariet C.W.), Rodríguez-Díaz, J. (Jesús), Keyaerts, E. (Els), Nielsen, X.C. (Xiaohui Chen), Puchhammer-Stöckl, E. (Elisabeth), Kroes, A.C.M. (Aloys), Buesa, J. (Javier), Breuer, J. (Judy), Claas, E.C.J. (Eric), and Vries, J.J.C. (Jutte) de

Abstract

Metagenomic high-throughput sequencing (mHTS) is a hypothesis-free, universal pathogen detection technique for determination of the DNA/RNA sequences in a variety of sample types and infectious syndromes. mHTS is still in its early stages of translating into clinical application. To support the development, implementation and standardization of mHTS procedures for virus diagnostics, the European Society for Clinical Virology (ESCV) Network on Next-Generation Sequencing (ENNGS) has been established. The aim of ENNGS is to bring together professionals involved in mHTS for viral diagnostics to share methodologies and experiences, and to develop application recommendations. This manuscript aims to provide practical recommendations for the wet lab procedures necessary for im

Published
2021
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2. Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.

Author

Salimi, V, Viegas, M, Trento, A, Agoti, CN, Anderson, LJ, Avadhanula, V, Bahl, J, Bont, L, Brister, JR, Cane, PA, Galiano, M, Graham, BS, Hatcher, EL, Hellferscee, O, Henke, DM, Hirve, S, Jackson, S, Keyaerts, E, Kragten-Tabatabaie, L, Lindstrom, S, Nauwelaers, I, Nokes, DJ, Openshaw, PJ, Peret, TC, Piedra, PA, Ramaekers, K, Rector, A, Trovão, NS, von Gottberg, A, Zambon, M, Zhang, W, Williams, TC, Barr, IG, Buchholz, UJ, Salimi, V, Viegas, M, Trento, A, Agoti, CN, Anderson, LJ, Avadhanula, V, Bahl, J, Bont, L, Brister, JR, Cane, PA, Galiano, M, Graham, BS, Hatcher, EL, Hellferscee, O, Henke, DM, Hirve, S, Jackson, S, Keyaerts, E, Kragten-Tabatabaie, L, Lindstrom, S, Nauwelaers, I, Nokes, DJ, Openshaw, PJ, Peret, TC, Piedra, PA, Ramaekers, K, Rector, A, Trovão, NS, von Gottberg, A, Zambon, M, Zhang, W, Williams, TC, Barr, IG, and Buchholz, UJ

Abstract

Human respiratory syncytial virus (HRSV) is the leading viral cause of serious pediatric respiratory disease, and lifelong reinfections are common. Its 2 major subgroups, A and B, exhibit some antigenic variability, enabling HRSV to circulate annually. Globally, research has increased the number of HRSV genomic sequences available. To ensure accurate molecular epidemiology analyses, we propose a uniform nomenclature for HRSV-positive samples and isolates, and HRSV sequences, namely: HRSV/subgroup identifier/geographic identifier/unique sequence identifier/year of sampling. We also propose a template for submitting associated metadata. Universal nomenclature would help researchers retrieve and analyze sequence data to better understand the evolution of this virus.

Published
2021

3. Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure

Author

López-Labrador, FX, Brown, JR, Fischer, N, Harvala, H, van Boheemen, Sander, Cinek, O, Sayiner, A, Madsen, TV, Auvinen, E, Kufner, V, Huber, M, Rodriguez, C, Jonges, M, Hönemann, M, Susi, P, Sousa, H, Klapper, PE, Pérez-Catalu?a, A, Hernandez, M, Molenkamp, Richard, der Hoek, LV, Schuurman, R (Rob), Couto, N, Leuzinger, K, Simmonds, P, Beer, M, Höper, D, Kamminga, S, Feltkamp, MCW, Rodríguez-Díaz, J, Keyaerts, E, Nielsen, XC, Puchhammer-Stöckl, E, Kroes, AC, Buesa, J, Breuer, J, Claas, ECJ, de Vries, J, López-Labrador, FX, Brown, JR, Fischer, N, Harvala, H, van Boheemen, Sander, Cinek, O, Sayiner, A, Madsen, TV, Auvinen, E, Kufner, V, Huber, M, Rodriguez, C, Jonges, M, Hönemann, M, Susi, P, Sousa, H, Klapper, PE, Pérez-Catalu?a, A, Hernandez, M, Molenkamp, Richard, der Hoek, LV, Schuurman, R (Rob), Couto, N, Leuzinger, K, Simmonds, P, Beer, M, Höper, D, Kamminga, S, Feltkamp, MCW, Rodríguez-Díaz, J, Keyaerts, E, Nielsen, XC, Puchhammer-Stöckl, E, Kroes, AC, Buesa, J, Breuer, J, Claas, ECJ, and de Vries, J

Abstract

Metagenomic high-throughput sequencing (mHTS) is a hypothesis-free, universal pathogen detection technique for determination of the DNA/RNA sequences in a variety of sample types and infectious syndromes. mHTS is still in its early stages of translating into clinical application. To support the development, implementation and standardization of mHTS procedures for virus diagnostics, the European Society for Clinical Virology (ESCV) Network on Next-Generation Sequencing (ENNGS) has been established. The aim of ENNGS is to bring together professionals involved in mHTS for viral diagnostics to share methodologies and experiences, and to develop application recommendations. This manuscript aims to provide practical recommendations for the wet lab procedures necessary for implementation of mHTS for virus diagnostics and to give recommendations for development and validation of laboratory methods, including mHTS quality assurance, control and quality assessment protocols.

Published
2021

4. Plant lectins are potent inhibitors of coronaviruses by interfering with two targets in the viral replication cycle

Author

Advances in Veterinary Medicine, Strategic Infection Biology, Dep Infectieziekten Immunologie, Keyaerts, E., Vijgen, L., Pannecouque, C., van Damme, E., Peumans, W., Egberink, H.F., Balzarini, J., van Ranst, M., Advances in Veterinary Medicine, Strategic Infection Biology, Dep Infectieziekten Immunologie, Keyaerts, E., Vijgen, L., Pannecouque, C., van Damme, E., Peumans, W., Egberink, H.F., Balzarini, J., and van Ranst, M.

Published
2007

5. Plant lectins are potent inhibitors of coronaviruses by interfering with two targets in the viral replication cycle

Author

Advances in Veterinary Medicine, Strategic Infection Biology, Dep Infectieziekten Immunologie, Keyaerts, E., Vijgen, L., Pannecouque, C., van Damme, E., Peumans, W., Egberink, H.F., Balzarini, J., van Ranst, M., Advances in Veterinary Medicine, Strategic Infection Biology, Dep Infectieziekten Immunologie, Keyaerts, E., Vijgen, L., Pannecouque, C., van Damme, E., Peumans, W., Egberink, H.F., Balzarini, J., and van Ranst, M.

Published
2007

6. Plant lectins are potent inhibitors of coronaviruses by interfering with two targets in the viral replication cycle

Author

Advances in Veterinary Medicine, Strategic Infection Biology, Dep Infectieziekten Immunologie, Keyaerts, E., Vijgen, L., Pannecouque, C., van Damme, E., Peumans, W., Egberink, H.F., Balzarini, J., van Ranst, M., Advances in Veterinary Medicine, Strategic Infection Biology, Dep Infectieziekten Immunologie, Keyaerts, E., Vijgen, L., Pannecouque, C., van Damme, E., Peumans, W., Egberink, H.F., Balzarini, J., and van Ranst, M.

Published
2007

8. Pyridine N-oxide derivatives are inhibitory to the human SARS and feline infectious peritonitis coronavirus in cell culture

Author

Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., van der Meer, F., Stevens, M., de Clercq, E., Egberink, H.F., van Ranst, M., Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., van der Meer, F., Stevens, M., de Clercq, E., Egberink, H.F., and van Ranst, M.

Published
2006

9. Inhibition of feline (FIPV) and human (SARS) coronavirus by semisynthetic derivatives of glycopeptide antibiotics

Author

Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., Egberink, H.F., de Clercq, E., van Ranst, M., Printsevskaya, S.S., Olsufyeva, E.N., Solovieva, S.E., Preobrazhenskaya, M.N., Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., Egberink, H.F., de Clercq, E., van Ranst, M., Printsevskaya, S.S., Olsufyeva, E.N., Solovieva, S.E., and Preobrazhenskaya, M.N.

Published
2006

10. Inhibition of feline (FIPV) and human (SARS) coronavirus by semisynthetic derivatives of glycopeptide antibiotics

Author

Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., Egberink, H.F., de Clercq, E., van Ranst, M., Printsevskaya, S.S., Olsufyeva, E.N., Solovieva, S.E., Preobrazhenskaya, M.N., Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., Egberink, H.F., de Clercq, E., van Ranst, M., Printsevskaya, S.S., Olsufyeva, E.N., Solovieva, S.E., and Preobrazhenskaya, M.N.

Published
2006

11. Pyridine N-oxide derivatives are inhibitory to the human SARS and feline infectious peritonitis coronavirus in cell culture

Author

Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., van der Meer, F., Stevens, M., de Clercq, E., Egberink, H.F., van Ranst, M., Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., van der Meer, F., Stevens, M., de Clercq, E., Egberink, H.F., and van Ranst, M.

Published
2006

12. Pyridine N-oxide derivatives are inhibitory to the human SARS and feline infectious peritonitis coronavirus in cell culture

Author

Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., van der Meer, F., Stevens, M., de Clercq, E., Egberink, H.F., van Ranst, M., Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., van der Meer, F., Stevens, M., de Clercq, E., Egberink, H.F., and van Ranst, M.

Published
2006

13. Inhibition of feline (FIPV) and human (SARS) coronavirus by semisynthetic derivatives of glycopeptide antibiotics

Author

Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., Egberink, H.F., de Clercq, E., van Ranst, M., Printsevskaya, S.S., Olsufyeva, E.N., Solovieva, S.E., Preobrazhenskaya, M.N., Strategic Infection Biology, Dep Infectieziekten Immunologie, Balzarini, J., Keyaerts, E., Vijgen, L., Egberink, H.F., de Clercq, E., van Ranst, M., Printsevskaya, S.S., Olsufyeva, E.N., Solovieva, S.E., and Preobrazhenskaya, M.N.

Published
2006

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