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Dataset: In-situ temperature profiles, Temperature profiles of hydrothermal sediments measured by HOV Alvin’s heat flow probe in Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/878936, NSF Division of Ocean Sciences (NSF OCE) OCE-1829680

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Edgcomb, V., Teske, A., & Mara, P. Microbial hydrocarbon degradation in Guaymas Basin—exploring the roles and potential interactions of fungi and sulfate-reducing bacteria. Frontiers in Microbiology, 13, (2022): 831828, https://doi.org/10.3389/fmicb.2022.831828., Hydrocarbons are degraded by specialized types of bacteria, archaea, and fungi. Their occurrence in marine hydrocarbon seeps and sediments prompted a study of their role and their potential interactions, using the hydrocarbon-rich hydrothermal sediments of Guaymas Basin in the Gulf of California as a model system. This sedimented vent site is characterized by localized hydrothermal circulation that introduces seawater sulfate into methane- and hydrocarbon-rich sediments, and thus selects for diverse hydrocarbon-degrading communities of which methane, alkane- and aromatics-oxidizing sulfate-reducing bacteria and archaea have been especially well-studied. Current molecular and cultivation surveys are detecting diverse fungi in Guaymas Basin hydrothermal sediments, and draw attention to possible fungal-bacterial interactions. In this Hypothesis and Theory article, we report on background, recent results and outcomes, and underlying hypotheses that guide current experiments on this topic in the Edgcomb and Teske labs in 2021, and that we will revisit during our ongoing investigations of bacterial, archaeal, and fungal communities in the deep sedimentary subsurface of Guaymas Basin., This project was supported by collaborative NSF Biological Oceanography grants OCE-1829903 and OCE-1829680 “Hydrothermal fungi in the Guaymas Basin Hydrocarbon Ecosystem” to VE and AT, and collaborative NSF Biological Oceanography grants OCE-2046799 and OCE-2048489 “IODP-enabled Insights into Fungi and Their Metabolic Interactions with Other Microorganisms in Deep Subsurface Hydrothermal Sediments” to VE and AT. PM was supported by OCE-2046799 and OCE-1829903. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grant 1357238 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to AT.

Dataset: In-situ temperature profiles, Temperature profiles of hydrothermal sediments measured by HOV Alvin’s heat flow probe in Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/878936, NSF Division of Ocean Sciences (NSF OCE) OCE-1829680

Hydrocarbons are degraded by specialized types of bacteria, archaea, and fungi. Their occurrence in marine hydrocarbon seeps and sediments prompted a study of their role and their potential interactions, using the hydrocarbon-rich hydrothermal sediments of Guaymas Basin in the Gulf of California as a model system. This sedimented vent site is characterized by localized hydrothermal circulation that introduces seawater sulfate into methane- and hydrocarbon-rich sediments, and thus selects for diverse hydrocarbon-degrading communities of which methane, alkane- and aromatics-oxidizing sulfate-reducing bacteria and archaea have been especially well-studied. Current molecular and cultivation surveys are detecting diverse fungi in Guaymas Basin hydrothermal sediments, and draw attention to possible fungal-bacterial interactions. In this Hypothesis and Theory article, we report on background, recent results and outcomes, and underlying hypotheses that guide current experiments on this topic in the Edgcomb and Teske labs in 2021, and that we will revisit during our ongoing investigations of bacterial, archaeal, and fungal communities in the deep sedimentary subsurface of Guaymas Basin.

Dataset: In-situ temperature profiles, Temperature profiles of hydrothermal sediments measured by HOV Alvin’s heat flow probe in Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/878936, NSF Division of Ocean Sciences (NSF OCE) OCE-1829680

Studies on the involvement of intrusive magmatism in hydrocarbon generation within sedimentary basins have gained momentum owing to increasing appraisal of the role that such processes may play in controlling global carbon cycle perturbations, and the exploration potential of the volcanic sedimentary basins. Nevertheless, for many areas the causal link between the intrusions and surrounding hydrocarbon systems remains disputed, encouraging a search for methods that could aid in identifying different hydrocarbon sources. Here, we have performed a multi-proxy geochemical study of the middle Cretaceous methane-seep deposits of the Basque-Cantabrian Basin, an early-stage, peri-cratonic rift marking the Mesozoic opening of the Bay of Biscay. Infilled by a thick sedimentary succession intruded by shallow-level igneous bodies, the basin shares analogies with modern young, sedimented rifts that sustain hydrocarbon seepage. We have applied a novel approach that uses the Nd isotope composition of the seep deposits to constrain the relationship between hydrocarbon seepage and igneous activity, and to explore the general potential of Nd isotopes to trace magmatic-influenced fluids in volcanic sedimentary basins. The Nd isotope data have been combined with rare earth element analyses and carbon and oxygen isotope measurements, providing broad insight into the former composition of the seeping fluids. For three out of four investigated seeps, the Nd isotope ratios observed in authigenic seep carbonates include signatures markedly more radiogenic than that reconstructed for background seawater-derived pore waters. The level of this Nd-143-enrichment varies both between and within individual deposits, reflecting spatial and temporal differences in fluid composition typical of seep-related environments. The radiogenic Nd isotope signals provide evidence of subseafloor interactions between the seeping fluids and mafic igneous materials, supporting the model of an igneous control on t

Cold seeps and hydrothermal vents are seafloor habitats fueled by subsurface energy sources. Both habitat types coexist in Guaymas Basin in the Gulf of California, providing an opportunity to compare microbial communities with distinct physiologies adapted to different thermal regimes. Hydrothermally active sites in the southern Guaymas Basin axial valley, and cold seep sites at Octopus Mound, a carbonate mound with abundant methanotrophic cold seep fauna at the Central Seep location on the northern off-axis flanking regions, show consistent geochemical and microbial differences between hot, temperate, cold seep, and background sites. The changing microbial actors include autotrophic and heterotrophic bacterial and archaeal lineages that catalyze sulfur, nitrogen, and methane cycling, organic matter degradation, and hydrocarbon oxidation. Thermal, biogeochemical, and microbiological characteristics of the sampling locations indicate that sediment thermal regime and seep-derived or hydrothermal energy sources structure the microbial communities at the sediment surface.

Studies on the involvement of intrusive magmatism in hydrocarbon generation within sedimentary basins have gained momentum owing to increasing appraisal of the role that such processes may play in controlling global carbon cycle perturbations, and the exploration potential of the volcanic sedimentary basins. Nevertheless, for many areas the causal link between the intrusions and surrounding hydrocarbon systems remains disputed, encouraging a search for methods that could aid in identifying different hydrocarbon sources. Here, we have performed a multi-proxy geochemical study of the middle Cretaceous methane-seep deposits of the Basque-Cantabrian Basin, an early-stage, peri-cratonic rift marking the Mesozoic opening of the Bay of Biscay. Infilled by a thick sedimentary succession intruded by shallow-level igneous bodies, the basin shares analogies with modern young, sedimented rifts that sustain hydrocarbon seepage. We have applied a novel approach that uses the Nd isotope composition of the seep deposits to constrain the relationship between hydrocarbon seepage and igneous activity, and to explore the general potential of Nd isotopes to trace magmatic-influenced fluids in volcanic sedimentary basins. The Nd isotope data have been combined with rare earth element analyses and carbon and oxygen isotope measurements, providing broad insight into the former composition of the seeping fluids. For three out of four investigated seeps, the Nd isotope ratios observed in authigenic seep carbonates include signatures markedly more radiogenic than that reconstructed for background seawater-derived pore waters. The level of this Nd-143-enrichment varies both between and within individual deposits, reflecting spatial and temporal differences in fluid composition typical of seep-related environments. The radiogenic Nd isotope signals provide evidence of subseafloor interactions between the seeping fluids and mafic igneous materials, supporting the model of an igneous control on t

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Teske, A., Wegener, G., Chanton, J. P., White, D., MacGregor, B., Hoer, D., de Beer, D., Zhuang, G., Saxton, M. A., Joye, S. B., Lizarralde, D., Soule, S. A., & Ruff, S. E. Microbial communities under distinct thermal and geochemical regimes in axial and off-axis sediments of Guaymas Basin. Frontiers in Microbiology, 12, (2021): 633649, https://doi.org/10.3389/fmicb.2021.633649., Cold seeps and hydrothermal vents are seafloor habitats fueled by subsurface energy sources. Both habitat types coexist in Guaymas Basin in the Gulf of California, providing an opportunity to compare microbial communities with distinct physiologies adapted to different thermal regimes. Hydrothermally active sites in the southern Guaymas Basin axial valley, and cold seep sites at Octopus Mound, a carbonate mound with abundant methanotrophic cold seep fauna at the Central Seep location on the northern off-axis flanking regions, show consistent geochemical and microbial differences between hot, temperate, cold seep, and background sites. The changing microbial actors include autotrophic and heterotrophic bacterial and archaeal lineages that catalyze sulfur, nitrogen, and methane cycling, organic matter degradation, and hydrocarbon oxidation. Thermal, biogeochemical, and microbiological characteristics of the sampling locations indicate that sediment thermal regime and seep-derived or hydrothermal energy sources structure the microbial communities at the sediment surface., Research on Guaymas Basin in the Teske lab is supported by NSF Molecular and cellular Biology grant 1817381 “Collaborative Research: Next generation physiology: a systems-level understanding of microbes driving carbon cycling in marine sediments”. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grants 1357238 and 1357360 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to AT and SJ, respectively. SER was supported by an AITF/Eyes High Postdoctoral Fellowship and start-up funds provided by the Marine Biological Laboratory.

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Teske, A., Wegener, G., Chanton, J. P., White, D., MacGregor, B., Hoer, D., de Beer, D., Zhuang, G., Saxton, M. A., Joye, S. B., Lizarralde, D., Soule, S. A., & Ruff, S. E. Microbial communities under distinct thermal and geochemical regimes in axial and off-axis sediments of Guaymas Basin. Frontiers in Microbiology, 12, (2021): 633649, https://doi.org/10.3389/fmicb.2021.633649., Cold seeps and hydrothermal vents are seafloor habitats fueled by subsurface energy sources. Both habitat types coexist in Guaymas Basin in the Gulf of California, providing an opportunity to compare microbial communities with distinct physiologies adapted to different thermal regimes. Hydrothermally active sites in the southern Guaymas Basin axial valley, and cold seep sites at Octopus Mound, a carbonate mound with abundant methanotrophic cold seep fauna at the Central Seep location on the northern off-axis flanking regions, show consistent geochemical and microbial differences between hot, temperate, cold seep, and background sites. The changing microbial actors include autotrophic and heterotrophic bacterial and archaeal lineages that catalyze sulfur, nitrogen, and methane cycling, organic matter degradation, and hydrocarbon oxidation. Thermal, biogeochemical, and microbiological characteristics of the sampling locations indicate that sediment thermal regime and seep-derived or hydrothermal energy sources structure the microbial communities at the sediment surface., Research on Guaymas Basin in the Teske lab is supported by NSF Molecular and cellular Biology grant 1817381 “Collaborative Research: Next generation physiology: a systems-level understanding of microbes driving carbon cycling in marine sediments”. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grants 1357238 and 1357360 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to AT and SJ, respectively. SER was supported by an AITF/Eyes High Postdoctoral Fellowship and start-up funds provided by the Marine Biological Laboratory.

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Teske, A., Wegener, G., Chanton, J. P., White, D., MacGregor, B., Hoer, D., de Beer, D., Zhuang, G., Saxton, M. A., Joye, S. B., Lizarralde, D., Soule, S. A., & Ruff, S. E. Microbial communities under distinct thermal and geochemical regimes in axial and off-axis sediments of Guaymas Basin. Frontiers in Microbiology, 12, (2021): 633649, https://doi.org/10.3389/fmicb.2021.633649., Cold seeps and hydrothermal vents are seafloor habitats fueled by subsurface energy sources. Both habitat types coexist in Guaymas Basin in the Gulf of California, providing an opportunity to compare microbial communities with distinct physiologies adapted to different thermal regimes. Hydrothermally active sites in the southern Guaymas Basin axial valley, and cold seep sites at Octopus Mound, a carbonate mound with abundant methanotrophic cold seep fauna at the Central Seep location on the northern off-axis flanking regions, show consistent geochemical and microbial differences between hot, temperate, cold seep, and background sites. The changing microbial actors include autotrophic and heterotrophic bacterial and archaeal lineages that catalyze sulfur, nitrogen, and methane cycling, organic matter degradation, and hydrocarbon oxidation. Thermal, biogeochemical, and microbiological characteristics of the sampling locations indicate that sediment thermal regime and seep-derived or hydrothermal energy sources structure the microbial communities at the sediment surface., Research on Guaymas Basin in the Teske lab is supported by NSF Molecular and cellular Biology grant 1817381 “Collaborative Research: Next generation physiology: a systems-level understanding of microbes driving carbon cycling in marine sediments”. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grants 1357238 and 1357360 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to AT and SJ, respectively. SER was supported by an AITF/Eyes High Postdoctoral Fellowship and start-up funds provided by the Marine Biological Laboratory.

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Teske, A., Wegener, G., Chanton, J. P., White, D., MacGregor, B., Hoer, D., de Beer, D., Zhuang, G., Saxton, M. A., Joye, S. B., Lizarralde, D., Soule, S. A., & Ruff, S. E. Microbial communities under distinct thermal and geochemical regimes in axial and off-axis sediments of Guaymas Basin. Frontiers in Microbiology, 12, (2021): 633649, https://doi.org/10.3389/fmicb.2021.633649., Cold seeps and hydrothermal vents are seafloor habitats fueled by subsurface energy sources. Both habitat types coexist in Guaymas Basin in the Gulf of California, providing an opportunity to compare microbial communities with distinct physiologies adapted to different thermal regimes. Hydrothermally active sites in the southern Guaymas Basin axial valley, and cold seep sites at Octopus Mound, a carbonate mound with abundant methanotrophic cold seep fauna at the Central Seep location on the northern off-axis flanking regions, show consistent geochemical and microbial differences between hot, temperate, cold seep, and background sites. The changing microbial actors include autotrophic and heterotrophic bacterial and archaeal lineages that catalyze sulfur, nitrogen, and methane cycling, organic matter degradation, and hydrocarbon oxidation. Thermal, biogeochemical, and microbiological characteristics of the sampling locations indicate that sediment thermal regime and seep-derived or hydrothermal energy sources structure the microbial communities at the sediment surface., Research on Guaymas Basin in the Teske lab is supported by NSF Molecular and cellular Biology grant 1817381 “Collaborative Research: Next generation physiology: a systems-level understanding of microbes driving carbon cycling in marine sediments”. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grants 1357238 and 1357360 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to AT and SJ, respectively. SER was supported by an AITF/Eyes High Postdoctoral Fellowship and start-up funds provided by the Marine Biological Laboratory.

Studies on the involvement of intrusive magmatism in hydrocarbon generation within sedimentary basins have gained momentum owing to increasing appraisal of the role that such processes may play in controlling global carbon cycle perturbations, and the exploration potential of the volcanic sedimentary basins. Nevertheless, for many areas the causal link between the intrusions and surrounding hydrocarbon systems remains disputed, encouraging a search for methods that could aid in identifying different hydrocarbon sources. Here, we have performed a multi-proxy geochemical study of the middle Cretaceous methane-seep deposits of the Basque-Cantabrian Basin, an early-stage, peri-cratonic rift marking the Mesozoic opening of the Bay of Biscay. Infilled by a thick sedimentary succession intruded by shallow-level igneous bodies, the basin shares analogies with modern young, sedimented rifts that sustain hydrocarbon seepage. We have applied a novel approach that uses the Nd isotope composition of the seep deposits to constrain the relationship between hydrocarbon seepage and igneous activity, and to explore the general potential of Nd isotopes to trace magmatic-influenced fluids in volcanic sedimentary basins. The Nd isotope data have been combined with rare earth element analyses and carbon and oxygen isotope measurements, providing broad insight into the former composition of the seeping fluids. For three out of four investigated seeps, the Nd isotope ratios observed in authigenic seep carbonates include signatures markedly more radiogenic than that reconstructed for background seawater-derived pore waters. The level of this Nd-143-enrichment varies both between and within individual deposits, reflecting spatial and temporal differences in fluid composition typical of seep-related environments. The radiogenic Nd isotope signals provide evidence of subseafloor interactions between the seeping fluids and mafic igneous materials, supporting the model of an igneous control on t

This study provides an analysis of vesicomyid bivalve–symbiont community distribution across cold seep and hydrothermal vent areas in the Guaymas Basin (Gulf of California, Mexico). Using a combination of morphological and molecular approaches including fluorescent in situ hybridization (FISH), and electronic microscopy observations, vesicomyid clam species and their associated symbionts were characterized and results were analyzed in light of geochemical conditions and other on‐site observations. A greater diversity of vesicomyids was found at cold seep areas, where three different species were present (Phreagena soyoae [syn. kilmeri], Archivesica gigas, and Calyptogena pacifica). In contrast, A. gigas was the only species sampled across the hydrothermal vent area. The same haplotype of A. gigas was found in both hydrothermal vent and cold seep areas, highlighting possible contemporary exchanges among neighboring vents and seeps. In either ecosystem, molecular characterization of the symbionts confirmed the specificity between symbionts and hosts and supported the hypothesis of a predominantly vertical transmission. In addition, patterns of clams could reflect potential niche preferences for each species. The occurrence of numerous traces of vesicomyid movements on sediments in the sites colonized by A. gigas seemed to indicate that this species might have a better ability to move. Furthermore, variation in gill sulfur content could reveal a higher plasticity and sulfur storage capacity in A. gigas. Thus, the distribution of vesicomyid species across the chemosynthetic areas of the Guaymas Basin could be explained by differences in biological traits of the vesicomyid species that would allow A. gigas to more easily exploit transient and punctual sources of available sulfide than P. soyoae.

This study provides an analysis of vesicomyid bivalve–symbiont community distribution across cold seep and hydrothermal vent areas in the Guaymas Basin (Gulf of California, Mexico). Using a combination of morphological and molecular approaches including fluorescent in situ hybridization (FISH), and electronic microscopy observations, vesicomyid clam species and their associated symbionts were characterized and results were analyzed in light of geochemical conditions and other on‐site observations. A greater diversity of vesicomyids was found at cold seep areas, where three different species were present (Phreagena soyoae [syn. kilmeri], Archivesica gigas, and Calyptogena pacifica). In contrast, A. gigas was the only species sampled across the hydrothermal vent area. The same haplotype of A. gigas was found in both hydrothermal vent and cold seep areas, highlighting possible contemporary exchanges among neighboring vents and seeps. In either ecosystem, molecular characterization of the symbionts confirmed the specificity between symbionts and hosts and supported the hypothesis of a predominantly vertical transmission. In addition, patterns of clams could reflect potential niche preferences for each species. The occurrence of numerous traces of vesicomyid movements on sediments in the sites colonized by A. gigas seemed to indicate that this species might have a better ability to move. Furthermore, variation in gill sulfur content could reveal a higher plasticity and sulfur storage capacity in A. gigas. Thus, the distribution of vesicomyid species across the chemosynthetic areas of the Guaymas Basin could be explained by differences in biological traits of the vesicomyid species that would allow A. gigas to more easily exploit transient and punctual sources of available sulfide than P. soyoae.

This study provides an analysis of vesicomyid bivalve–symbiont community distribution across cold seep and hydrothermal vent areas in the Guaymas Basin (Gulf of California, Mexico). Using a combination of morphological and molecular approaches including fluorescent in situ hybridization (FISH), and electronic microscopy observations, vesicomyid clam species and their associated symbionts were characterized and results were analyzed in light of geochemical conditions and other on‐site observations. A greater diversity of vesicomyids was found at cold seep areas, where three different species were present (Phreagena soyoae [syn. kilmeri], Archivesica gigas, and Calyptogena pacifica). In contrast, A. gigas was the only species sampled across the hydrothermal vent area. The same haplotype of A. gigas was found in both hydrothermal vent and cold seep areas, highlighting possible contemporary exchanges among neighboring vents and seeps. In either ecosystem, molecular characterization of the symbionts confirmed the specificity between symbionts and hosts and supported the hypothesis of a predominantly vertical transmission. In addition, patterns of clams could reflect potential niche preferences for each species. The occurrence of numerous traces of vesicomyid movements on sediments in the sites colonized by A. gigas seemed to indicate that this species might have a better ability to move. Furthermore, variation in gill sulfur content could reveal a higher plasticity and sulfur storage capacity in A. gigas. Thus, the distribution of vesicomyid species across the chemosynthetic areas of the Guaymas Basin could be explained by differences in biological traits of the vesicomyid species that would allow A. gigas to more easily exploit transient and punctual sources of available sulfide than P. soyoae.

Insights into the factors controlling fluid circulation through the crust and the nature of fluid venting at the seafloor are first steps in understanding their effect on ocean properties and climate change. New data on the seafloor morphology, sub-surface sedimentary stratification, and water column of the sedimented Southern Trough hydrothermal field (Guaymas basin) were acquired during the BIG cruise in 2010. These data provide accurate and high-resolution information on the geological context of the vents, on the distribution of acoustic anomalies in the water column, and on the possible nature of the fluid generating these echoes. More than 40 hydrothermal edifices were observed. The southern zone of the study area hosts hydrothermal sites that differ from the northern area. The southern vents are located inside or at the edge of small sub-circular depressions and the relationship between active edifices and collapsed areas involves different steps in the continous hydrothermal setting. Sub-bottom data show surface and sub-surface events, with some reflection layers possibly indicating subsurface hydrothermal precipitates or lithification with an estimated age of approximately 10 000 to 20 000 years. Based on the position and maximum altitude of the acoustic anomalies above the seafloor, two types of fluid emission echoes are distinguished: 1) anomalies reaching a maximal altitude of ¡«350m above the seafloor and seen both at the northern and southern fields and 2) strong, narrow and straight anomalies reaching 1334 or 1702m above the seafloor that are only present in the southern hydrothermal fields of the studied area.We suggest that there are two types of echoes reflecting different fluid escapes based on the physical conditions of fluid venting and degassing and their relationship to geologic features: hydrothermal fluids or hydrothermal fluid mixed with hydrocarbon gas, oil or condensates rising through the water column. The collapsed depressions observed, La connaissance des facteurs contrôlant la migration des fluides dans la lithosphère et leur nature sur le fond de la mer est indispensable à la compréhension de leurs effets sur l’océan et le changement climatique. La campagne BIG, réalisée en 2010 sur le champ hydrothermal de la ride de Southern Trough (bassin de Guaymas), a permis l’acquisition de nouvelles données sur la morphologie des zones de sorties hydrothermales, la stratification de subsurface à proximité de ces zones et la nature des échos acoustiques enregistrés dans la colonne d’eau. Ces données nous permettent de préciser la nature du contexte géologique au niveau des sorties et, aidés de la répartition des échos dans la colonne d’eau, elles nous renseignent également sur la possible nature des fluides associés à ces sorties. Plus de 40 édifices hydrothermaux sont observés dans la zone d’étude montrant des différences morphologiques entre les sites localisés dans le nord et ceux présents dans le sud où ils se situent à l’intérieur ou en bordure de petites dépressions sub-circulaires bien marquées dans la morphologie. Les relations qui existent entre les édifices hydrothermaux et les structures effondrées semblent impliquer plusieurs stades de formation. Les données du sondeur de sédiment porté par l’AUV montrent des réflecteurs en subsurface, indiquant la présence de structures hydrothermales enfouies d’un âge de 10 000 à 20 000 ans, témoins des étapes de lithification hydrothermale. L’étude des anomalies acoustiques dans la colonne d’eau et de leur hauteur maximale au-dessus du fond révèlent deux types d’anomalies : des échos diffus ne dépassant pas une altitude de 350 m au-dessus du fond et, uniquement dans le sud, des échos étroits, plus marqués, atteignant 1334 et 1702 m au-dessus du fond. En regard des conditions physiques de stabilité des fluides et en lien avec les structures géologiques observées dans la zone, nous proposons que ces deux types d’échos représentent différents types de fluides

Insights into the factors controlling fluid circulation through the crust and the nature of fluid venting at the seafloor are first steps in understanding their effect on ocean properties and climate change. New data on the seafloor morphology, sub-surface sedimentary stratification, and water column of the sedimented Southern Trough hydrothermal field (Guaymas basin) were acquired during the BIG cruise in 2010. These data provide accurate and high-resolution information on the geological context of the vents, on the distribution of acoustic anomalies in the water column, and on the possible nature of the fluid generating these echoes. More than 40 hydrothermal edifices were observed. The southern zone of the study area hosts hydrothermal sites that differ from the northern area. The southern vents are located inside or at the edge of small sub-circular depressions and the relationship between active edifices and collapsed areas involves different steps in the continous hydrothermal setting. Sub-bottom data show surface and sub-surface events, with some reflection layers possibly indicating subsurface hydrothermal precipitates or lithification with an estimated age of approximately 10 000 to 20 000 years. Based on the position and maximum altitude of the acoustic anomalies above the seafloor, two types of fluid emission echoes are distinguished: 1) anomalies reaching a maximal altitude of ¡«350m above the seafloor and seen both at the northern and southern fields and 2) strong, narrow and straight anomalies reaching 1334 or 1702m above the seafloor that are only present in the southern hydrothermal fields of the studied area.We suggest that there are two types of echoes reflecting different fluid escapes based on the physical conditions of fluid venting and degassing and their relationship to geologic features: hydrothermal fluids or hydrothermal fluid mixed with hydrocarbon gas, oil or condensates rising through the water column. The collapsed depressions observed, La connaissance des facteurs contrôlant la migration des fluides dans la lithosphère et leur nature sur le fond de la mer est indispensable à la compréhension de leurs effets sur l’océan et le changement climatique. La campagne BIG, réalisée en 2010 sur le champ hydrothermal de la ride de Southern Trough (bassin de Guaymas), a permis l’acquisition de nouvelles données sur la morphologie des zones de sorties hydrothermales, la stratification de subsurface à proximité de ces zones et la nature des échos acoustiques enregistrés dans la colonne d’eau. Ces données nous permettent de préciser la nature du contexte géologique au niveau des sorties et, aidés de la répartition des échos dans la colonne d’eau, elles nous renseignent également sur la possible nature des fluides associés à ces sorties. Plus de 40 édifices hydrothermaux sont observés dans la zone d’étude montrant des différences morphologiques entre les sites localisés dans le nord et ceux présents dans le sud où ils se situent à l’intérieur ou en bordure de petites dépressions sub-circulaires bien marquées dans la morphologie. Les relations qui existent entre les édifices hydrothermaux et les structures effondrées semblent impliquer plusieurs stades de formation. Les données du sondeur de sédiment porté par l’AUV montrent des réflecteurs en subsurface, indiquant la présence de structures hydrothermales enfouies d’un âge de 10 000 à 20 000 ans, témoins des étapes de lithification hydrothermale. L’étude des anomalies acoustiques dans la colonne d’eau et de leur hauteur maximale au-dessus du fond révèlent deux types d’anomalies : des échos diffus ne dépassant pas une altitude de 350 m au-dessus du fond et, uniquement dans le sud, des échos étroits, plus marqués, atteignant 1334 et 1702 m au-dessus du fond. En regard des conditions physiques de stabilité des fluides et en lien avec les structures géologiques observées dans la zone, nous proposons que ces deux types d’échos représentent différents types de fluides

Insights into the factors controlling fluid circulation through the crust and the nature of fluid venting at the seafloor are first steps in understanding their effect on ocean properties and climate change. New data on the seafloor morphology, sub-surface sedimentary stratification, and water column of the sedimented Southern Trough hydrothermal field (Guaymas basin) were acquired during the BIG cruise in 2010. These data provide accurate and high-resolution information on the geological context of the vents, on the distribution of acoustic anomalies in the water column, and on the possible nature of the fluid generating these echoes. More than 40 hydrothermal edifices were observed. The southern zone of the study area hosts hydrothermal sites that differ from the northern area. The southern vents are located inside or at the edge of small sub-circular depressions and the relationship between active edifices and collapsed areas involves different steps in the continous hydrothermal setting. Sub-bottom data show surface and sub-surface events, with some reflection layers possibly indicating subsurface hydrothermal precipitates or lithification with an estimated age of approximately 10 000 to 20 000 years. Based on the position and maximum altitude of the acoustic anomalies above the seafloor, two types of fluid emission echoes are distinguished: 1) anomalies reaching a maximal altitude of ¡«350m above the seafloor and seen both at the northern and southern fields and 2) strong, narrow and straight anomalies reaching 1334 or 1702m above the seafloor that are only present in the southern hydrothermal fields of the studied area.We suggest that there are two types of echoes reflecting different fluid escapes based on the physical conditions of fluid venting and degassing and their relationship to geologic features: hydrothermal fluids or hydrothermal fluid mixed with hydrocarbon gas, oil or condensates rising through the water column. The collapsed depressions observed, La connaissance des facteurs contrôlant la migration des fluides dans la lithosphère et leur nature sur le fond de la mer est indispensable à la compréhension de leurs effets sur l’océan et le changement climatique. La campagne BIG, réalisée en 2010 sur le champ hydrothermal de la ride de Southern Trough (bassin de Guaymas), a permis l’acquisition de nouvelles données sur la morphologie des zones de sorties hydrothermales, la stratification de subsurface à proximité de ces zones et la nature des échos acoustiques enregistrés dans la colonne d’eau. Ces données nous permettent de préciser la nature du contexte géologique au niveau des sorties et, aidés de la répartition des échos dans la colonne d’eau, elles nous renseignent également sur la possible nature des fluides associés à ces sorties. Plus de 40 édifices hydrothermaux sont observés dans la zone d’étude montrant des différences morphologiques entre les sites localisés dans le nord et ceux présents dans le sud où ils se situent à l’intérieur ou en bordure de petites dépressions sub-circulaires bien marquées dans la morphologie. Les relations qui existent entre les édifices hydrothermaux et les structures effondrées semblent impliquer plusieurs stades de formation. Les données du sondeur de sédiment porté par l’AUV montrent des réflecteurs en subsurface, indiquant la présence de structures hydrothermales enfouies d’un âge de 10 000 à 20 000 ans, témoins des étapes de lithification hydrothermale. L’étude des anomalies acoustiques dans la colonne d’eau et de leur hauteur maximale au-dessus du fond révèlent deux types d’anomalies : des échos diffus ne dépassant pas une altitude de 350 m au-dessus du fond et, uniquement dans le sud, des échos étroits, plus marqués, atteignant 1334 et 1702 m au-dessus du fond. En regard des conditions physiques de stabilité des fluides et en lien avec les structures géologiques observées dans la zone, nous proposons que ces deux types d’échos représentent différents types de fluides

Insights into the factors controlling fluid circulation through the crust and the nature of fluid venting at the seafloor are first steps in understanding their effect on ocean properties and climate change. New data on the seafloor morphology, sub-surface sedimentary stratification, and water column of the sedimented Southern Trough hydrothermal field (Guaymas basin) were acquired during the BIG cruise in 2010. These data provide accurate and high-resolution information on the geological context of the vents, on the distribution of acoustic anomalies in the water column, and on the possible nature of the fluid generating these echoes. More than 40 hydrothermal edifices were observed. The southern zone of the study area hosts hydrothermal sites that differ from the northern area. The southern vents are located inside or at the edge of small sub-circular depressions and the relationship between active edifices and collapsed areas involves different steps in the continous hydrothermal setting. Sub-bottom data show surface and sub-surface events, with some reflection layers possibly indicating subsurface hydrothermal precipitates or lithification with an estimated age of approximately 10 000 to 20 000 years. Based on the position and maximum altitude of the acoustic anomalies above the seafloor, two types of fluid emission echoes are distinguished: 1) anomalies reaching a maximal altitude of ¡«350m above the seafloor and seen both at the northern and southern fields and 2) strong, narrow and straight anomalies reaching 1334 or 1702m above the seafloor that are only present in the southern hydrothermal fields of the studied area.We suggest that there are two types of echoes reflecting different fluid escapes based on the physical conditions of fluid venting and degassing and their relationship to geologic features: hydrothermal fluids or hydrothermal fluid mixed with hydrocarbon gas, oil or condensates rising through the water column. The collapsed depressions observed, La connaissance des facteurs contrôlant la migration des fluides dans la lithosphère et leur nature sur le fond de la mer est indispensable à la compréhension de leurs effets sur l’océan et le changement climatique. La campagne BIG, réalisée en 2010 sur le champ hydrothermal de la ride de Southern Trough (bassin de Guaymas), a permis l’acquisition de nouvelles données sur la morphologie des zones de sorties hydrothermales, la stratification de subsurface à proximité de ces zones et la nature des échos acoustiques enregistrés dans la colonne d’eau. Ces données nous permettent de préciser la nature du contexte géologique au niveau des sorties et, aidés de la répartition des échos dans la colonne d’eau, elles nous renseignent également sur la possible nature des fluides associés à ces sorties. Plus de 40 édifices hydrothermaux sont observés dans la zone d’étude montrant des différences morphologiques entre les sites localisés dans le nord et ceux présents dans le sud où ils se situent à l’intérieur ou en bordure de petites dépressions sub-circulaires bien marquées dans la morphologie. Les relations qui existent entre les édifices hydrothermaux et les structures effondrées semblent impliquer plusieurs stades de formation. Les données du sondeur de sédiment porté par l’AUV montrent des réflecteurs en subsurface, indiquant la présence de structures hydrothermales enfouies d’un âge de 10 000 à 20 000 ans, témoins des étapes de lithification hydrothermale. L’étude des anomalies acoustiques dans la colonne d’eau et de leur hauteur maximale au-dessus du fond révèlent deux types d’anomalies : des échos diffus ne dépassant pas une altitude de 350 m au-dessus du fond et, uniquement dans le sud, des échos étroits, plus marqués, atteignant 1334 et 1702 m au-dessus du fond. En regard des conditions physiques de stabilité des fluides et en lien avec les structures géologiques observées dans la zone, nous proposons que ces deux types d’échos représentent différents types de fluides

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 7 (2016): 75, doi:10.3389/fmicb.2016.00075., The hydrothermal mats, mounds, and chimneys of the southern Guaymas Basin are the surface expression of complex subsurface hydrothermal circulation patterns. In this overview, we document the most frequently visited features of this hydrothermal area with photographs, temperature measurements, and selected geochemical data; many of these distinct habitats await characterization of their microbial communities and activities. Microprofiler deployments on microbial mats and hydrothermal sediments show their steep geochemical and thermal gradients at millimeter-scale vertical resolution. Mapping these hydrothermal features and sampling locations within the southern Guaymas Basin suggest linkages to underlying shallow sills and heat flow gradients. Recognizing the inherent spatial limitations of much current Guaymas Basin sampling calls for comprehensive surveys of the wider spreading region., AT acknowledges a W. Reynolds research leave from UNC, Guaymas-relevant support from the Center for Dark Energy Biosphere Investigations (C-DEBI) at the University of Southern California

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 7 (2016): 75, doi:10.3389/fmicb.2016.00075., The hydrothermal mats, mounds, and chimneys of the southern Guaymas Basin are the surface expression of complex subsurface hydrothermal circulation patterns. In this overview, we document the most frequently visited features of this hydrothermal area with photographs, temperature measurements, and selected geochemical data; many of these distinct habitats await characterization of their microbial communities and activities. Microprofiler deployments on microbial mats and hydrothermal sediments show their steep geochemical and thermal gradients at millimeter-scale vertical resolution. Mapping these hydrothermal features and sampling locations within the southern Guaymas Basin suggest linkages to underlying shallow sills and heat flow gradients. Recognizing the inherent spatial limitations of much current Guaymas Basin sampling calls for comprehensive surveys of the wider spreading region., AT acknowledges a W. Reynolds research leave from UNC, Guaymas-relevant support from the Center for Dark Energy Biosphere Investigations (C-DEBI) at the University of Southern California

A high-resolution, 55 kyr long record of chalcophile and redox-sensitive trace element accumulation (Ag, Cd, Re, and Mo) from MD02-2515, western Guaymas Basin, is investigated in conjunction with patterns in stratigraphy and productivity. High opal concentrations (~59 wt. %), representing increased diatom production, coincide with laminated sediments and dilute the concentrations of organic carbon (Corg) and metals. A similarity between opal and normalized Corg, Ag, and Cd concentrations suggests delivery to the sediments by diatom export production, while patterns in normalized Re and Mo accumulation suggest a different emplacement mechanism. Although Mo enrichment in organic-rich, laminated sediments typically represents anoxic conditions at other locations, Mo (and Re) in Guaymas Basin is enriched in nonlaminated and bioturbated sediments that are representative of oxygenated conditions. Adsorption onto Fe- and/or Mn-oxyhydroxide surfaces during oxygenation inadequately explains both the Re and Mo enrichments. Thus, recently published mechanisms invoking direct Re and Mo removal from the water column and bioturbation-assisted irrigation of Re into the sediments are used to explain the counterintuitive observations in Guaymas Basin. The MD02-2515 stratigraphic and proxy records are also different from other records in the northeast Pacific in that there is little correspondence with Greenland Dansgaard-Oeschger interstadials. There is some correlation with Heinrich events, suggesting that ventilation of intermediate waters and/or reduced productivity may be important in controlling stratigraphy and trace element accumulation. The results question whether MD02-2515 records can be compared to northeast Pacific open-margin records, especially before 17 kyr B.P.

A high-resolution, 55 kyr long record of chalcophile and redox-sensitive trace element accumulation (Ag, Cd, Re, and Mo) from MD02-2515, western Guaymas Basin, is investigated in conjunction with patterns in stratigraphy and productivity. High opal concentrations (~59 wt. %), representing increased diatom production, coincide with laminated sediments and dilute the concentrations of organic carbon (Corg) and metals. A similarity between opal and normalized Corg, Ag, and Cd concentrations suggests delivery to the sediments by diatom export production, while patterns in normalized Re and Mo accumulation suggest a different emplacement mechanism. Although Mo enrichment in organic-rich, laminated sediments typically represents anoxic conditions at other locations, Mo (and Re) in Guaymas Basin is enriched in nonlaminated and bioturbated sediments that are representative of oxygenated conditions. Adsorption onto Fe- and/or Mn-oxyhydroxide surfaces during oxygenation inadequately explains both the Re and Mo enrichments. Thus, recently published mechanisms invoking direct Re and Mo removal from the water column and bioturbation-assisted irrigation of Re into the sediments are used to explain the counterintuitive observations in Guaymas Basin. The MD02-2515 stratigraphic and proxy records are also different from other records in the northeast Pacific in that there is little correspondence with Greenland Dansgaard-Oeschger interstadials. There is some correlation with Heinrich events, suggesting that ventilation of intermediate waters and/or reduced productivity may be important in controlling stratigraphy and trace element accumulation. The results question whether MD02-2515 records can be compared to northeast Pacific open-margin records, especially before 17 kyr B.P.

A high-resolution, 55 kyr long record of chalcophile and redox-sensitive trace element accumulation (Ag, Cd, Re, and Mo) from MD02-2515, western Guaymas Basin, is investigated in conjunction with patterns in stratigraphy and productivity. High opal concentrations (~59 wt. %), representing increased diatom production, coincide with laminated sediments and dilute the concentrations of organic carbon (Corg) and metals. A similarity between opal and normalized Corg, Ag, and Cd concentrations suggests delivery to the sediments by diatom export production, while patterns in normalized Re and Mo accumulation suggest a different emplacement mechanism. Although Mo enrichment in organic-rich, laminated sediments typically represents anoxic conditions at other locations, Mo (and Re) in Guaymas Basin is enriched in nonlaminated and bioturbated sediments that are representative of oxygenated conditions. Adsorption onto Fe- and/or Mn-oxyhydroxide surfaces during oxygenation inadequately explains both the Re and Mo enrichments. Thus, recently published mechanisms invoking direct Re and Mo removal from the water column and bioturbation-assisted irrigation of Re into the sediments are used to explain the counterintuitive observations in Guaymas Basin. The MD02-2515 stratigraphic and proxy records are also different from other records in the northeast Pacific in that there is little correspondence with Greenland Dansgaard-Oeschger interstadials. There is some correlation with Heinrich events, suggesting that ventilation of intermediate waters and/or reduced productivity may be important in controlling stratigraphy and trace element accumulation. The results question whether MD02-2515 records can be compared to northeast Pacific open-margin records, especially before 17 kyr B.P.

A high-resolution, 55 kyr long record of chalcophile and redox-sensitive trace element accumulation (Ag, Cd, Re, and Mo) from MD02-2515, western Guaymas Basin, is investigated in conjunction with patterns in stratigraphy and productivity. High opal concentrations (~59 wt. %), representing increased diatom production, coincide with laminated sediments and dilute the concentrations of organic carbon (Corg) and metals. A similarity between opal and normalized Corg, Ag, and Cd concentrations suggests delivery to the sediments by diatom export production, while patterns in normalized Re and Mo accumulation suggest a different emplacement mechanism. Although Mo enrichment in organic-rich, laminated sediments typically represents anoxic conditions at other locations, Mo (and Re) in Guaymas Basin is enriched in nonlaminated and bioturbated sediments that are representative of oxygenated conditions. Adsorption onto Fe- and/or Mn-oxyhydroxide surfaces during oxygenation inadequately explains both the Re and Mo enrichments. Thus, recently published mechanisms invoking direct Re and Mo removal from the water column and bioturbation-assisted irrigation of Re into the sediments are used to explain the counterintuitive observations in Guaymas Basin. The MD02-2515 stratigraphic and proxy records are also different from other records in the northeast Pacific in that there is little correspondence with Greenland Dansgaard-Oeschger interstadials. There is some correlation with Heinrich events, suggesting that ventilation of intermediate waters and/or reduced productivity may be important in controlling stratigraphy and trace element accumulation. The results question whether MD02-2515 records can be compared to northeast Pacific open-margin records, especially before 17 kyr B.P.

Anaerobic methane oxidizing communities of archaea (ANME) and sulfate reducing bacteria (SRB) grow slowly, which limits physiological studies. High methane partial pressure was previously successfully applied to stimulate growth, but it is not clear how different ANME subtypes and associated sulfate reducing bacteria (SRB) are affected by it. Here, we report growth of ANME/SRB in a membrane-capsule bioreactor inoculated with Eckernförde Bay sediment that combines high pressure incubation (10.1 MPa methane) and thorough mixing (100 rpm) with complete cell retention by a 0.2 µm membrane. Results were compared to previously obtained data from an ambient-pressure (0.101 MPa methane) bioreactor inoculated with the same sediment. Labelled-methane oxidation rates were not higher at 10.1 MPa, likely because measurements were done at ambient pressure. The subtype ANME-2a/b was abundant in both reactors, but subtype ANME-2c was only enriched at 10.1 MPa. SRB at 10.1 MPa mainly belonged to the SEEP-SRB2, Eel-1 group and Desulforomonadales and not to the typically found SEEP-SRB1. Increase of ANME-2a/b occurred in parallel with increase of SEEP-SRB2 which was previously only found associated with ANME-2c. Our results imply that the syntrophic association is flexible and that methane pressure and sulfide concentration influence growth of different ANME-SRB consortia. We also studied the effect of elevated methane pressure on methane production and oxidation by a mixture of methanogenic and sulfate-reducing sludge. Here, methane oxidation rates decreased and were not coupled to sulfide production, indicating trace methane oxidation during net methanogenesis and not anaerobic methane oxidation, even at high methane partial pressure.

Oceanic basalts host diverse microbial communities with various metabolisms involved in C, N, S, and Fe biogeochemical cycles which may contribute to mineral and glass alteration processes at, and below the seafloor. In order to study the microbial colonization on basaltic glasses and their potential biotic/abiotic weathering products, two colonization modules called AISICS ("Autonomous in situ Instrumented Colonization System") were deployed in hydrothermal deep-sea sediments at the Guaymas Basin for 8 days and 22 days. Each AISICS module contained 18 colonizers (including sterile controls) filled with basaltic glasses of contrasting composition. Chemical analyses of ambient fluids sampled through the colonizers showed a greater contribution of hydrothermal fluids (maximum temperature 57.6 degrees C) for the module deployed during the longer time period. For each colonizer, the phylogenetic diversity and metabolic function of bacterial and archaeal communities were explored using a molecular approach by cloning and sequencing. Results showed large microbial diversity in all colonizers. The bacterial distribution was primarily linked to the deployment duration, as well as the depth for the short deployment time module. Some 16s rRNA sequences formed a new cluster of Epsilonproteobacteria. Within the Archaea the retrieved diversity could not be linked to either duration, depth or substrata. However, mcrA gene sequences belonging to the ANME-1 mcrA-guaymas cluster were found sometimes associated with their putative sulfate-reducers syntrophs depending on the colonizers. Although no specific glass alteration texture was identified, nano-crystals of barite and pyrite were observed in close association with organic matter, suggesting a possible biological mediation. This study gives new insights into the colonization steps of volcanic rock substrates and the capability of microbial communities to exploit new environmental conditions.

Oceanic basalts host diverse microbial communities with various metabolisms involved in C, N, S, and Fe biogeochemical cycles which may contribute to mineral and glass alteration processes at, and below the seafloor. In order to study the microbial colonization on basaltic glasses and their potential biotic/abiotic weathering products, two colonization modules called AISICS ("Autonomous in situ Instrumented Colonization System") were deployed in hydrothermal deep-sea sediments at the Guaymas Basin for 8 days and 22 days. Each AISICS module contained 18 colonizers (including sterile controls) filled with basaltic glasses of contrasting composition. Chemical analyses of ambient fluids sampled through the colonizers showed a greater contribution of hydrothermal fluids (maximum temperature 57.6 degrees C) for the module deployed during the longer time period. For each colonizer, the phylogenetic diversity and metabolic function of bacterial and archaeal communities were explored using a molecular approach by cloning and sequencing. Results showed large microbial diversity in all colonizers. The bacterial distribution was primarily linked to the deployment duration, as well as the depth for the short deployment time module. Some 16s rRNA sequences formed a new cluster of Epsilonproteobacteria. Within the Archaea the retrieved diversity could not be linked to either duration, depth or substrata. However, mcrA gene sequences belonging to the ANME-1 mcrA-guaymas cluster were found sometimes associated with their putative sulfate-reducers syntrophs depending on the colonizers. Although no specific glass alteration texture was identified, nano-crystals of barite and pyrite were observed in close association with organic matter, suggesting a possible biological mediation. This study gives new insights into the colonization steps of volcanic rock substrates and the capability of microbial communities to exploit new environmental conditions.

Oceanic basalts host diverse microbial communities with various metabolisms involved in C, N, S, and Fe biogeochemical cycles which may contribute to mineral and glass alteration processes at, and below the seafloor. In order to study the microbial colonization on basaltic glasses and their potential biotic/abiotic weathering products, two colonization modules called AISICS ("Autonomous in situ Instrumented Colonization System") were deployed in hydrothermal deep-sea sediments at the Guaymas Basin for 8 days and 22 days. Each AISICS module contained 18 colonizers (including sterile controls) filled with basaltic glasses of contrasting composition. Chemical analyses of ambient fluids sampled through the colonizers showed a greater contribution of hydrothermal fluids (maximum temperature 57.6 degrees C) for the module deployed during the longer time period. For each colonizer, the phylogenetic diversity and metabolic function of bacterial and archaeal communities were explored using a molecular approach by cloning and sequencing. Results showed large microbial diversity in all colonizers. The bacterial distribution was primarily linked to the deployment duration, as well as the depth for the short deployment time module. Some 16s rRNA sequences formed a new cluster of Epsilonproteobacteria. Within the Archaea the retrieved diversity could not be linked to either duration, depth or substrata. However, mcrA gene sequences belonging to the ANME-1 mcrA-guaymas cluster were found sometimes associated with their putative sulfate-reducers syntrophs depending on the colonizers. Although no specific glass alteration texture was identified, nano-crystals of barite and pyrite were observed in close association with organic matter, suggesting a possible biological mediation. This study gives new insights into the colonization steps of volcanic rock substrates and the capability of microbial communities to exploit new environmental conditions.

At continental margins, and more particularly in cold seep areas, microbial and animal communities were locally detected at the surface of the sediments. These communities grow using reduced chemical compounds (H2S, Methane, COZ ...) contained in the percolated cold fluids and produced by both geological and microbial processes. ln order to study microbial community diversity in these ecosystems and their role in the environment as well as to understand the environmental factors influencing the distribution and ecophysiology of these communities, surface (0-20 cmbsf) but also deeper (<9 mbsf) sediments were collected at the Sonora Margin. Microbial communities have been studied using various molecular, cultural and microscopy approaches. This research allowed: i) to determine the structure and diversity of metabolically active microbial communities in sediments, ii) to highlight different ecophysiologies for methane cycling microorganisms (methanogens, ANME, SRB) and iii) to discover the presence of new microbial lineages and functions in the cold seeps sediments of the continental margins., Au niveau des marges continentales, et plus particulièrement dans des zones dites d'émissions de fluides froids, des communautés microbiennes et animales complexes se développent localement à la surface des sédiments. Ces communautés utilisent pour leur croissance des composés chimiques réduits (H2S, Méthane, CO2 ...), contenus dans un fluide à basse température, percolant à travers les sédiments et issus de phénomènes géologiques et de divers processus microbiens. Afin d'étudier la diversité des communautés microbiennes associées à ces écosystèmes ainsi que leur rôle dans l'environnement, et d'appréhender les paramètres environnementaux influençant la distribution et l'écophysiologie de ces communautés, des sédiments de surface (0-20 cm) mais également plus profonds (<9 mbsf) ont été prélevés au niveau de la Marge de Sonora. Les communautés microbiennes présentes ont été étudiées par diverses approches de biologie moléculaire, de mise en culture et de microscopie. Ce travail de recherche a permis : i) de déterminer la structure et la diversité des communautés microbiennes métaboliquement actives dans ces sédiments, ii) de mettre en évidence des écophysiologies différentes entre les acteurs du cycle du méthane (méthanogènes, ANMEs, SRB), prépondérant dans cet écosystème et iii) de découvrir la présence de nouvelles lignées et fonctions microbiennes dans les sédiments de zones d'émission de fluides froids des marges continentales.

At continental margins, and more particularly in cold seep areas, microbial and animal communities were locally detected at the surface of the sediments. These communities grow using reduced chemical compounds (H2S, Methane, COZ ...) contained in the percolated cold fluids and produced by both geological and microbial processes. ln order to study microbial community diversity in these ecosystems and their role in the environment as well as to understand the environmental factors influencing the distribution and ecophysiology of these communities, surface (0-20 cmbsf) but also deeper (<9 mbsf) sediments were collected at the Sonora Margin. Microbial communities have been studied using various molecular, cultural and microscopy approaches. This research allowed: i) to determine the structure and diversity of metabolically active microbial communities in sediments, ii) to highlight different ecophysiologies for methane cycling microorganisms (methanogens, ANME, SRB) and iii) to discover the presence of new microbial lineages and functions in the cold seeps sediments of the continental margins., Au niveau des marges continentales, et plus particulièrement dans des zones dites d'émissions de fluides froids, des communautés microbiennes et animales complexes se développent localement à la surface des sédiments. Ces communautés utilisent pour leur croissance des composés chimiques réduits (H2S, Méthane, CO2 ...), contenus dans un fluide à basse température, percolant à travers les sédiments et issus de phénomènes géologiques et de divers processus microbiens. Afin d'étudier la diversité des communautés microbiennes associées à ces écosystèmes ainsi que leur rôle dans l'environnement, et d'appréhender les paramètres environnementaux influençant la distribution et l'écophysiologie de ces communautés, des sédiments de surface (0-20 cm) mais également plus profonds (<9 mbsf) ont été prélevés au niveau de la Marge de Sonora. Les communautés microbiennes présentes ont été étudiées par diverses approches de biologie moléculaire, de mise en culture et de microscopie. Ce travail de recherche a permis : i) de déterminer la structure et la diversité des communautés microbiennes métaboliquement actives dans ces sédiments, ii) de mettre en évidence des écophysiologies différentes entre les acteurs du cycle du méthane (méthanogènes, ANMEs, SRB), prépondérant dans cet écosystème et iii) de découvrir la présence de nouvelles lignées et fonctions microbiennes dans les sédiments de zones d'émission de fluides froids des marges continentales.

At continental margins, and more particularly in cold seep areas, microbial and animal communities were locally detected at the surface of the sediments. These communities grow using reduced chemical compounds (H2S, Methane, COZ ...) contained in the percolated cold fluids and produced by both geological and microbial processes. ln order to study microbial community diversity in these ecosystems and their role in the environment as well as to understand the environmental factors influencing the distribution and ecophysiology of these communities, surface (0-20 cmbsf) but also deeper (<9 mbsf) sediments were collected at the Sonora Margin. Microbial communities have been studied using various molecular, cultural and microscopy approaches. This research allowed: i) to determine the structure and diversity of metabolically active microbial communities in sediments, ii) to highlight different ecophysiologies for methane cycling microorganisms (methanogens, ANME, SRB) and iii) to discover the presence of new microbial lineages and functions in the cold seeps sediments of the continental margins., Au niveau des marges continentales, et plus particulièrement dans des zones dites d'émissions de fluides froids, des communautés microbiennes et animales complexes se développent localement à la surface des sédiments. Ces communautés utilisent pour leur croissance des composés chimiques réduits (H2S, Méthane, CO2 ...), contenus dans un fluide à basse température, percolant à travers les sédiments et issus de phénomènes géologiques et de divers processus microbiens. Afin d'étudier la diversité des communautés microbiennes associées à ces écosystèmes ainsi que leur rôle dans l'environnement, et d'appréhender les paramètres environnementaux influençant la distribution et l'écophysiologie de ces communautés, des sédiments de surface (0-20 cm) mais également plus profonds (<9 mbsf) ont été prélevés au niveau de la Marge de Sonora. Les communautés microbiennes présentes ont été étudiées par diverses approches de biologie moléculaire, de mise en culture et de microscopie. Ce travail de recherche a permis : i) de déterminer la structure et la diversité des communautés microbiennes métaboliquement actives dans ces sédiments, ii) de mettre en évidence des écophysiologies différentes entre les acteurs du cycle du méthane (méthanogènes, ANMEs, SRB), prépondérant dans cet écosystème et iii) de découvrir la présence de nouvelles lignées et fonctions microbiennes dans les sédiments de zones d'émission de fluides froids des marges continentales.

At continental margins, and more particularly in cold seep areas, microbial and animal communities were locally detected at the surface of the sediments. These communities grow using reduced chemical compounds (H2S, Methane, COZ ...) contained in the percolated cold fluids and produced by both geological and microbial processes. ln order to study microbial community diversity in these ecosystems and their role in the environment as well as to understand the environmental factors influencing the distribution and ecophysiology of these communities, surface (0-20 cmbsf) but also deeper (<9 mbsf) sediments were collected at the Sonora Margin. Microbial communities have been studied using various molecular, cultural and microscopy approaches. This research allowed: i) to determine the structure and diversity of metabolically active microbial communities in sediments, ii) to highlight different ecophysiologies for methane cycling microorganisms (methanogens, ANME, SRB) and iii) to discover the presence of new microbial lineages and functions in the cold seeps sediments of the continental margins., Au niveau des marges continentales, et plus particulièrement dans des zones dites d'émissions de fluides froids, des communautés microbiennes et animales complexes se développent localement à la surface des sédiments. Ces communautés utilisent pour leur croissance des composés chimiques réduits (H2S, Méthane, CO2 ...), contenus dans un fluide à basse température, percolant à travers les sédiments et issus de phénomènes géologiques et de divers processus microbiens. Afin d'étudier la diversité des communautés microbiennes associées à ces écosystèmes ainsi que leur rôle dans l'environnement, et d'appréhender les paramètres environnementaux influençant la distribution et l'écophysiologie de ces communautés, des sédiments de surface (0-20 cm) mais également plus profonds (<9 mbsf) ont été prélevés au niveau de la Marge de Sonora. Les communautés microbiennes présentes ont été étudiées par diverses approches de biologie moléculaire, de mise en culture et de microscopie. Ce travail de recherche a permis : i) de déterminer la structure et la diversité des communautés microbiennes métaboliquement actives dans ces sédiments, ii) de mettre en évidence des écophysiologies différentes entre les acteurs du cycle du méthane (méthanogènes, ANMEs, SRB), prépondérant dans cet écosystème et iii) de découvrir la présence de nouvelles lignées et fonctions microbiennes dans les sédiments de zones d'émission de fluides froids des marges continentales.

During the months of February and March, 1993, the JASON Foundation for Education and the Woods Hole Oceanographic Institution conducted a joint investigation of the hydrothermal vents in Guaymas Basin. The JASON Project also conducted a separate investigation of the gray whale population at San Ignacio Lagoon. The primary objective of the JASON Project was to use advanced telecommunication technology to provide 750,000 students across No. America, Bermuda, Mexico, and Europe with the opportunity to participate in live scientific exploration and discovery. There were 58 live JASON Project broadcasts during the expedition period. The primary goal of the Woods Hole Program was to use the remotely operated vehicle system JASON and the manned submersible TURTLE to carry out a multidisciplinary investigation of the hydrothermal vents situated in Guaymas Basin. What follows is a series of summary reports which explain in greater detail the results of the individual science programs.

During the French-Mexican cruise 'Guaynaut', carried out in November 1991 in the southern depression of the Guaymas Basin (gulf of California), an actively spreading oceanic basin, various samples were collected by means of the submersible 'Nautile'. The on-line coupling of purge and trap to capillary gas chromatography-mass spectrometry (P/T-GC-MS) has been applied to the analysis of volatile organic compounds (VOC) in water, sediments and hydrothermal deposit samples in order to contribute to the characterization of the bacterial microflora activity which is developed on this particular hydrothermal site. The results obtained for alkanes, monoaromatic hydrocarbons and organosulfur compounds lead to successful interpretation in terms of bacterial activity., Durant la campagne franco-mexicaine « Guaynaut », effectuée en novembre 1991 dans la dépression sud du bassin de Guaymas (golfe de Californie), zone hydrothermale active, divers échantillons on été prélevés à l'aide du sous-marin Nautile. Le couplage direct du système extraction gazeux/préconcentration sur adsorbant solide, avec l'ensemble chromatographie en phase gazeuse à haute résolution/spectrométrie de masse a été utilisé pour l'analyse des substances organiques volatiles dans des échantillons d'eau, de sédiments et dépôts minéraux hydrothermaux. Les résultats obtenus concernent les alcanes, les hydrocarbures mono-aromatiques et les composés organiques soufrés. Ils sont discutés afin de pouvoir caractériser noramment l'activité bactérienne qui se développe dans ce système hydrothermal sous-marin très particulier.

During the French-Mexican cruise 'Guaynaut', carried out in November 1991 in the southern depression of the Guaymas Basin (gulf of California), an actively spreading oceanic basin, various samples were collected by means of the submersible 'Nautile'. The on-line coupling of purge and trap to capillary gas chromatography-mass spectrometry (P/T-GC-MS) has been applied to the analysis of volatile organic compounds (VOC) in water, sediments and hydrothermal deposit samples in order to contribute to the characterization of the bacterial microflora activity which is developed on this particular hydrothermal site. The results obtained for alkanes, monoaromatic hydrocarbons and organosulfur compounds lead to successful interpretation in terms of bacterial activity., Durant la campagne franco-mexicaine « Guaynaut », effectuée en novembre 1991 dans la dépression sud du bassin de Guaymas (golfe de Californie), zone hydrothermale active, divers échantillons on été prélevés à l'aide du sous-marin Nautile. Le couplage direct du système extraction gazeux/préconcentration sur adsorbant solide, avec l'ensemble chromatographie en phase gazeuse à haute résolution/spectrométrie de masse a été utilisé pour l'analyse des substances organiques volatiles dans des échantillons d'eau, de sédiments et dépôts minéraux hydrothermaux. Les résultats obtenus concernent les alcanes, les hydrocarbures mono-aromatiques et les composés organiques soufrés. Ils sont discutés afin de pouvoir caractériser noramment l'activité bactérienne qui se développe dans ce système hydrothermal sous-marin très particulier.

During the French-Mexican cruise 'Guaynaut', carried out in November 1991 in the southern depression of the Guaymas Basin (gulf of California), an actively spreading oceanic basin, various samples were collected by means of the submersible 'Nautile'. The on-line coupling of purge and trap to capillary gas chromatography-mass spectrometry (P/T-GC-MS) has been applied to the analysis of volatile organic compounds (VOC) in water, sediments and hydrothermal deposit samples in order to contribute to the characterization of the bacterial microflora activity which is developed on this particular hydrothermal site. The results obtained for alkanes, monoaromatic hydrocarbons and organosulfur compounds lead to successful interpretation in terms of bacterial activity., Durant la campagne franco-mexicaine « Guaynaut », effectuée en novembre 1991 dans la dépression sud du bassin de Guaymas (golfe de Californie), zone hydrothermale active, divers échantillons on été prélevés à l'aide du sous-marin Nautile. Le couplage direct du système extraction gazeux/préconcentration sur adsorbant solide, avec l'ensemble chromatographie en phase gazeuse à haute résolution/spectrométrie de masse a été utilisé pour l'analyse des substances organiques volatiles dans des échantillons d'eau, de sédiments et dépôts minéraux hydrothermaux. Les résultats obtenus concernent les alcanes, les hydrocarbures mono-aromatiques et les composés organiques soufrés. Ils sont discutés afin de pouvoir caractériser noramment l'activité bactérienne qui se développe dans ce système hydrothermal sous-marin très particulier.

During the French-Mexican cruise 'Guaynaut', carried out in November 1991 in the southern depression of the Guaymas Basin (gulf of California), an actively spreading oceanic basin, various samples were collected by means of the submersible 'Nautile'. The on-line coupling of purge and trap to capillary gas chromatography-mass spectrometry (P/T-GC-MS) has been applied to the analysis of volatile organic compounds (VOC) in water, sediments and hydrothermal deposit samples in order to contribute to the characterization of the bacterial microflora activity which is developed on this particular hydrothermal site. The results obtained for alkanes, monoaromatic hydrocarbons and organosulfur compounds lead to successful interpretation in terms of bacterial activity., Durant la campagne franco-mexicaine « Guaynaut », effectuée en novembre 1991 dans la dépression sud du bassin de Guaymas (golfe de Californie), zone hydrothermale active, divers échantillons on été prélevés à l'aide du sous-marin Nautile. Le couplage direct du système extraction gazeux/préconcentration sur adsorbant solide, avec l'ensemble chromatographie en phase gazeuse à haute résolution/spectrométrie de masse a été utilisé pour l'analyse des substances organiques volatiles dans des échantillons d'eau, de sédiments et dépôts minéraux hydrothermaux. Les résultats obtenus concernent les alcanes, les hydrocarbures mono-aromatiques et les composés organiques soufrés. Ils sont discutés afin de pouvoir caractériser noramment l'activité bactérienne qui se développe dans ce système hydrothermal sous-marin très particulier.

The study showed minerals such as barite, gypsum, wurtzite, chalcopyrite, marcasite, galena and calcite. The random relation between metal concentration and core depth apparently reflects the changes in hydrothermal activity. The high variation of hydrothermal activity over short distances in the Guaymas Basin is due to active extensional tectonics, the associated seismic activity in the Southern Rift Valley and the high rate of sedimentation., The study showed minerals such as barite, gypsum, wurtzite, chalcopyrite, marcasite, galena and calcite. The random relation between metal concentration and core depth apparently reflects the changes in hydrothermal activity. The high variation of hydrothermal activity over short distances in the Guaymas Basin is due to active extensional tectonics, the associated seismic activity in the Southern Rift Valley and the high rate of sedimentation.